Citrus Sinensis ID: 019324

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccccEEEEEccccccccccccEEEEcEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHcccccccccccccccccccccccccEEEccccccccEEEccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccccccccccccccHccccccccEEcccccEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHcccccccccHHHcccccccccHHHccccccccEEEcccccHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccEEEEccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
magfrlppeepevspqqppqqvrvagdlvsddersvaadSWSIkseygstldddqRHADAAEALSSAAnfransdynsdkeepdpegmasMLGLQSYWDSAYADELANFrehghagevwFGADVMDVVASWTKSLCISIsqghmlnhvedlksepveendkylsswsvldigtgNGLLLQELSKqgfsdltgvdyseDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKgtldaiglhpdgplkriMYWDSVSKlvapggllvitscnstkDELVHEVSNLSQRrigvsqeheikdeeacreppfrylnhvrtyptfmfggsegsrVATVAFLRN
Flexible Loop (DISEMBL)
magfrlppeepevspqqppqQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADAAEALSsaanfransdynsDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVsnlsqrrigvsqeheikdeeacreppfryLNHVRTYPTfmfggsegsrvatvaflrn
Low Complexity Region (SEG)
MAGFRLppeepevspqqppqqvrvAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHadaaealssaanfraNSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Disordered region (IsUnstruct)
*******************************************************************************************LGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDL*******NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV*********************CREPPFRYLNHVRTYPTFMFGGSEGSRVATVA****
Disordered Region (DISOPRED)
********************************ERSVAADSW****************************************************LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Disordered Region (DISEMBL)
***********************VAGD***********DSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANS*************MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Disordered Region (DISPRO)
**********************************SVAADSWSIKSEYGSTLDDDQRHADAAEALSSAANF****************G*ASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS****************ACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
Q5JPI9	291	Methyltransferase-like pr	yes	no	0.539	0.635	0.413	5e-36
Q9D853	244	Methyltransferase-like pr	yes	no	0.606	0.852	0.365	3e-33
Q5D013	233	Methyltransferase-like pr	yes	no	0.588	0.866	0.328	2e-31
P40516	257	N-lysine methyltransferas	yes	no	0.606	0.809	0.324	2e-23
Q9P7Z3	238	N-lysine methyltransferas	yes	no	0.615	0.886	0.330	3e-23
Q54XD0	321	Hexaprenyldihydroxybenzoa	no	no	0.317	0.339	0.301	3e-05
A5WVX1	690	Methyltransferase-like pr	no	no	0.303	0.150	0.348	0.0001
A9KGL7	234	3-demethylubiquinone-9 3-	yes	no	0.306	0.448	0.321	0.0003
B6J5Y2	234	3-demethylubiquinone-9 3-	yes	no	0.320	0.470	0.316	0.0003
Q820B5	234	3-demethylubiquinone-9 3-	yes	no	0.320	0.470	0.316	0.0004

>sp|Q5JPI9|MET10_HUMAN Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=1 SV=2

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 28/213 (13%)

Query: 78  SDKEEPDPEGMA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLC 136
           SDK  P  +G   S LG + +WD+ Y  EL  FRE+G  GE+WFG + M+ +  W     
Sbjct: 17  SDKGSPGEDGFVPSALGTREHWDAVYERELQTFREYGDTGEIWFGEESMNRLIRWM---- 72

Query: 137 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS 196
               Q H +         P++         SVLDIGTGNG+ L EL+K GFS++TG+DYS
Sbjct: 73  ----QKHKI---------PLDA--------SVLDIGTGNGVFLVELAKFGFSNITGIDYS 111

Query: 197 EDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTLDAIGLHPDGPL-KRI 254
             AI L+ S+  ++G S IK  V+D L+   +   F + +DKGT DAI L+PD  + KR 
Sbjct: 112 PSAIQLSGSIIEKEGLSNIKLKVEDFLNLSTQLSGFHICIDKGTFDAISLNPDNAIEKRK 171

Query: 255 MYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287
            Y  S+S+++   G  +ITSCN TK+EL++E S
Sbjct: 172 QYVKSLSRVLKVKGFFLITSCNWTKEELLNEFS 204

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9D853|MET10_MOUSE Methyltransferase-like protein 10 OS=Mus musculus GN=Mettl10 PE=2 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 135/268 (50%), Gaps = 60/268 (22%)

Query: 85  PEG-------MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCI 137
           PEG       + S LG + +WD+ Y  EL  F+E+G  GE+WFG + M+ +  W      
Sbjct: 18  PEGSSAADDFVPSALGTREHWDAVYERELRTFQEYGDTGEIWFGEESMNRLIRWM----- 72

Query: 138 SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE 197
              Q H +         P++         SVLDIGTGNG+ L EL K GFS++TG+DYS 
Sbjct: 73  ---QKHKI---------PLDA--------SVLDIGTGNGVFLVELVKHGFSNITGIDYSP 112

Query: 198 DAINLAQSLANRDGFSCIKFLVDDVLD--TKLERQFQLVMDKGTLDAIGLHPDGPL-KRI 254
            AI L+ S+  ++G S I   V+D L+  TKL   F + +DKGT DAI L+PD  + KR 
Sbjct: 113 SAIKLSASILEKEGLSNINLKVEDFLNPSTKLS-GFHVCVDKGTYDAISLNPDNAIEKRK 171

Query: 255 MYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFR 314
            Y  S+S+++   G  +ITSCN TK EL+   S               +  E   E P  
Sbjct: 172 QYVMSLSRVLEVKGFFLITSCNWTKAELLDAFS---------------EGFELFEELP-- 214

Query: 315 YLNHVRTYPTFMFGGSEGSRVATVAFLR 342
                   P F FGG  G+ VA + F +
Sbjct: 215 -------TPKFSFGGRSGNTVAALVFQK 235

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5D013|MET10_DANRE Methyltransferase-like protein 10 OS=Danio rerio GN=mettl10 PE=2 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 51/253 (20%)

Query: 90  SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 149
           S LG + YWD AY  EL  +++ G  GE+WFG + M  V  W                  
Sbjct: 26  SKLGTKEYWDGAYKRELQTYKDIGDVGEIWFGEESMHRVIRW------------------ 67

Query: 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209
            ++++ + EN       ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+ L  ++   
Sbjct: 68  -MEAQNISENA------AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVE 120

Query: 210 DGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHP-DGPLKRIMYWDSVSKLVAPG 267
           +G   I   V+D L+   E + F + +DKGT DAI L+P D    +  Y  S+  ++ P 
Sbjct: 121 EGLKNINIQVEDFLNPSTELKGFDVCIDKGTFDAISLNPEDREEAKKHYVTSLRAVMRPN 180

Query: 268 GLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMF 327
           G  +ITSCN TK++L+                          +P F  +  + T P F F
Sbjct: 181 GFFIITSCNWTKEQLLE-----------------------IFKPGFELVRELPT-PNFQF 216

Query: 328 GGSEGSRVATVAF 340
           GG  G+ V  + F
Sbjct: 217 GGVTGNSVTALVF 229

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P40516|SEE1_YEAST N-lysine methyltransferase SEE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEE1 PE=1 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 132/265 (49%), Gaps = 57/265 (21%)

Query: 89  ASMLGLQSYWDSAYADELANFREHGH-AGEVWFGADVMDVVASWTKSLCISISQGHMLNH 147
            S LG + YWD  YA EL NFR +    G+ WF                 S ++  M++ 
Sbjct: 37  TSKLGTKKYWDELYALELENFRRNPQDTGDCWFSD---------------SDAEQKMIDF 81

Query: 148 -VEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQS 205
            V+++ +  + EN       SV+D+GTGNG +L EL +  F   L G+DYSE+++ LA +
Sbjct: 82  LVDNIGAYRISENA------SVVDLGTGNGHMLFELHQTEFQGKLVGIDYSEESVKLASN 135

Query: 206 LANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI---GLHPDGPLKRI-MYWDS 259
           +A   G  + I F   D+     +  ++ +V+DKGTLDAI   G+  +G L  + +Y   
Sbjct: 136 IAEATGVDNFISFQQADIFSGDWKPGKYDIVLDKGTLDAISLSGMKINGKLDVVDVYAGV 195

Query: 260 VSKLVAPGGLLVITSCNSTKDELVH--EVSNLSQRRIGVSQEHEIKDEEACREPPFRYLN 317
           V +++   G+ +ITSCN T+DELV   E  NL   +        IK              
Sbjct: 196 VERILKKDGIFLITSCNFTQDELVKIIETDNLKMWKT-------IK-------------- 234

Query: 318 HVRTYPTFMFGGSEGSRVATVAFLR 342
               YP F FGG +G+ + +VAF++
Sbjct: 235 ----YPVFQFGGVQGATICSVAFVK 255

Lysine methyltransferase. Dimethylates TEF1/eEF1A at 'Lys-316'. May play a role in intracellular transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9P7Z3|SEE1_SCHPO N-lysine methyltransferase see1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=see1 PE=2 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 52/263 (19%)

Query: 90  SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 149
           S LG + YWD+ Y  E++NF E    GEVWFG +  + +  W +            +H+ 
Sbjct: 7   SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLE------------DHIS 54

Query: 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ------GFSDLTGVDYSEDAINLA 203
               E  E      + + VLD+GTGNG LL  L ++          L GVDYSE AI LA
Sbjct: 55  TSFREVSEA-----APFRVLDLGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLA 109

Query: 204 QSLANRDGFS-CIKFLVDDVL-DTKL-ERQFQLVMDKGTLDAIGLHP---DGPLKRIMYW 257
           +++A    FS  +KF   D++ D+K   + + L++DKGT DAI L     DG     +Y 
Sbjct: 110 KNIARHRQFSDKVKFQQLDIIKDSKFCSKDWDLILDKGTFDAISLSGELLDGRPLNSVYV 169

Query: 258 DSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLN 317
           D V  +++P G+ +ITSCN T  EL                      EE   +  F  ++
Sbjct: 170 DRVRGMLSPNGIFLITSCNWTIQEL----------------------EERFTKNGF-IVH 206

Query: 318 HVRTYPTFMFGGSEGSRVATVAF 340
                P F F GS GS  + +AF
Sbjct: 207 STVPVPVFEFQGSTGSSTSVIAF 229

Lysine methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q54XD0|COQ3_DICDI Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial OS=Dictyostelium discoideum GN=coq3 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 17/126 (13%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----------GF 212
           L   +V+D+G G GLL + LS+ G S + G+D +++ I +A S A+ D            
Sbjct: 126 LEGLNVIDVGCGVGLLTESLSRLGASKVVGLDAAKNNILMAISHASFDQKLNENIQNKSL 185

Query: 213 SCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
           + ++  +++  + + ++QF  V    +L+ I  H D P + I   D +SK+V PGG + I
Sbjct: 186 NYLESTIENFYNIENDQQFDAVC---SLEVIE-HVDNPKQFI---DYLSKIVKPGGSIFI 238

Query: 273 TSCNST 278
           ++ N T
Sbjct: 239 STINKT 244

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAI-NLAQSLANRDGFSCIKFLVDDVLDTK 226
           VL +G GN  L ++L   G+  LT +D SE  + ++ Q  A R     + F   D   T 
Sbjct: 52  VLVVGCGNSELSEQLYDVGYRQLTNIDISETVVSHMNQRNAERR--PDLSFQQLDATQTG 109

Query: 227 LER-QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274
            E   FQ+ +DKGTLDA+    DG L   M  + V +++A GG  V  +
Sbjct: 110 FESGSFQVTLDKGTLDAMASEEDGALAGRMLAE-VGRVLAVGGRYVCIT 157

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A9KGL7|UBIG_COXBN 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ubiG PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 10/115 (8%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 222
           L    VLD+G G GLL + L+K G + +TGVD SE  I++A++ A +   + I +   D+
Sbjct: 50  LKGKHVLDVGCGGGLLSEALAKHG-AIVTGVDMSESLIDVAKNHAEQQQLN-INYQCQDI 107

Query: 223 -LDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276
            + TK  ++F ++     L+ +   PD P + I    + + L+ PGG L  ++ N
Sbjct: 108 EILTKDAQRFDIITCMELLEHV---PD-PQRMI---KNCAALIKPGGKLFFSTIN 155

Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.

Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 2

>sp|B6J5Y2|UBIG_COXB1 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=ubiG PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 10/120 (8%)

Query: 158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKF 217
           E    L    VLD+G G GLL + L+K G + +TGVD SE  I++A++ A +   + I +
Sbjct: 45  EQQITLKGKHVLDVGCGGGLLSEALAKHG-AIVTGVDMSESLIDVAKNHAEQQQLN-INY 102

Query: 218 LVDDV-LDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276
              D+ + TK  ++F ++     L+ +   PD P + I    + + L+ PGG L  ++ N
Sbjct: 103 QCQDIEILTKDAQRFDIITCMELLEHV---PD-PQRMI---KNCAALIKPGGKLFFSTIN 155

Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.

Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 2

>sp|Q820B5|UBIG_COXBU 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=ubiG PE=3 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 10/120 (8%)

Query: 158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKF 217
           E    L    VLD+G G GLL + L+K G + +TGVD SE  I++A++ A +   + I +
Sbjct: 45  EQQITLKGKHVLDVGCGGGLLSEALAKHG-AIVTGVDMSESLIDVAKNHAEQQQLN-INY 102

Query: 218 LVDDV-LDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276
              D+ + TK  ++F ++     L+ +   PD P + I    + + L+ PGG L  ++ N
Sbjct: 103 QCQDIEILTKDAQRFDIITCMELLEHV---PD-PQRMI---KNCAALIKPGGKLFFSTIN 155

Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
356569031	342	PREDICTED: methyltransferase-like protei	0.994	0.997	0.764	1e-150
356499626	342	PREDICTED: methyltransferase-like protei	0.994	0.997	0.761	1e-150
224124078	342	predicted protein [Populus trichocarpa]	0.985	0.988	0.792	1e-147
225453070	340	PREDICTED: methyltransferase-like protei	0.985	0.994	0.739	1e-147
357508247	340	Methyltransferase-like protein [Medicago	0.979	0.988	0.747	1e-146
255574272	336	conserved hypothetical protein [Ricinus	0.976	0.997	0.755	1e-145
4760710	337	SLL2-S9-protein [Brassica rapa]	0.976	0.994	0.714	1e-138
449445949	344	PREDICTED: methyltransferase-like protei	0.982	0.979	0.722	1e-138
1518113	337	SLL2 [Brassica napus]	0.976	0.994	0.708	1e-137
15219724	358	putative S locus-linked protein [Arabido	0.994	0.952	0.678	1e-132

>gi|356569031|ref|XP_003552710.1| PREDICTED: methyltransferase-like protein 10-like [Glycine max]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/344 (76%), Positives = 299/344 (86%), Gaps = 3/344 (0%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RL PE+ +VS QQ       A DLVSDD+RSVAADSWSIKSEYGSTLDDDQRHADA
Sbjct: 1   MAGIRLLPEDSDVS-QQSRAVPLSAADLVSDDDRSVAADSWSIKSEYGSTLDDDQRHADA 59

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           AEALS+A N R  SDY+SDK+EPD E + SMLG QSYWD+AYADEL NFREHGHAGEVWF
Sbjct: 60  AEALSNA-NLRPPSDYSSDKDEPDSEAVTSMLGFQSYWDAAYADELTNFREHGHAGEVWF 118

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G DVM+VVASWTK+LC+ ISQG + N V+++K+E  E  DK LS+WSVLDIGTGNGLLLQ
Sbjct: 119 GVDVMEVVASWTKTLCVEISQGRIPNDVDEVKTEVDELGDKVLSTWSVLDIGTGNGLLLQ 178

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240
           EL+KQGFSDLTG DYSE AINLAQSLANRDGFS +KFLVDDVL+TKLE++F+LVMDKGTL
Sbjct: 179 ELAKQGFSDLTGTDYSERAINLAQSLANRDGFSNVKFLVDDVLETKLEQEFRLVMDKGTL 238

Query: 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEH 300
           DAIGLHPDGP+KR+MYWDSVSKLVAPGG+LV+TSCNSTKDELV EV + +QR+I  +QE 
Sbjct: 239 DAIGLHPDGPVKRMMYWDSVSKLVAPGGILVVTSCNSTKDELVQEVESFNQRKIATAQEL 298

Query: 301 E-IKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN 343
           E +K EE CREPPF+Y++HVRTYPTFMFGGS GSRVATVAF+R 
Sbjct: 299 EALKGEEPCREPPFQYVSHVRTYPTFMFGGSVGSRVATVAFIRK 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499626|ref|XP_003518638.1| PREDICTED: methyltransferase-like protein 10-like [Glycine max]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/344 (76%), Positives = 298/344 (86%), Gaps = 3/344 (0%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RL PE+ +VS QQ       A DLVSDD+RSVAADSWSIKSEYGSTLDDDQRHADA
Sbjct: 1   MAGIRLQPEDSDVS-QQSRAVALSATDLVSDDDRSVAADSWSIKSEYGSTLDDDQRHADA 59

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           AEALS+A N R  SDY+SDK+EPD E + SMLG QSYWDSAYADEL NFREHGH GEVWF
Sbjct: 60  AEALSNA-NLRPPSDYSSDKDEPDSEAVTSMLGFQSYWDSAYADELTNFREHGHTGEVWF 118

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G DVM+VVASWTK+LC+ ISQGH+ N V+++K+E  +  DK LS+WSVLDIGTGNGLLLQ
Sbjct: 119 GVDVMEVVASWTKALCVEISQGHIPNGVDEVKAEADKLGDKVLSTWSVLDIGTGNGLLLQ 178

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240
           EL+KQGFSDLTG DYSE AI+LAQSLANRDGFS +KFLVDDVL+TKLE++F+LVMDKGTL
Sbjct: 179 ELAKQGFSDLTGTDYSERAISLAQSLANRDGFSNVKFLVDDVLETKLEQEFRLVMDKGTL 238

Query: 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQE- 299
           DAIGLHPDGP+KR+MYWDSVS+LVA GG+LVITSCN+TKDELV EV + +QR+I  +QE 
Sbjct: 239 DAIGLHPDGPVKRMMYWDSVSRLVASGGILVITSCNNTKDELVQEVESFNQRKIATAQEL 298

Query: 300 HEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN 343
             +KDEE CREPPF+Y+NHVRTYPTFMFGGS GSRVATVAFLR 
Sbjct: 299 GAVKDEEPCREPPFQYVNHVRTYPTFMFGGSVGSRVATVAFLRK 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124078|ref|XP_002330099.1| predicted protein [Populus trichocarpa] gi|222871233|gb|EEF08364.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/347 (79%), Positives = 298/347 (85%), Gaps = 9/347 (2%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG---DLVSDDERSVAADSWSIKSEYGSTLDDDQRH 57
           M G RL  EE          Q+R AG   DLVSDD+RSVAADSWSIKS+YGSTLDDDQRH
Sbjct: 1   MTGIRLQQEES-----ADLTQIRAAGTGGDLVSDDDRSVAADSWSIKSDYGSTLDDDQRH 55

Query: 58  ADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGE 117
           ADAAEALS+AAN RA SDY+SDKEE D EG+ASMLGLQSYWD+AYADELANF EHGHAGE
Sbjct: 56  ADAAEALSAAANCRAASDYSSDKEELDAEGVASMLGLQSYWDAAYADELANFHEHGHAGE 115

Query: 118 VWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGL 177
           VWFGADVMDV+ASWTK LC  ISQG + NHV+D+KSE VEE+DKYLSSWSVLDIGTGNGL
Sbjct: 116 VWFGADVMDVIASWTKGLCFEISQGCIPNHVDDIKSETVEESDKYLSSWSVLDIGTGNGL 175

Query: 178 LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK 237
           LL EL+KQGFSDLTGVDYSE AINLA+ LA+RDGFS I  LVDDVL+TKL RQFQLVMDK
Sbjct: 176 LLHELAKQGFSDLTGVDYSEGAINLARRLADRDGFSNINLLVDDVLETKLNRQFQLVMDK 235

Query: 238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVS 297
           GTLDAIGLHPDG +KRIMYW+SVSKLVA GG+LVITSCN+TKDELV EV N +QRRI VS
Sbjct: 236 GTLDAIGLHPDGAIKRIMYWESVSKLVAVGGILVITSCNNTKDELVQEVENFNQRRIDVS 295

Query: 298 QEHE-IKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN 343
            E E +K  EA R+PPFRYLNHVRTYPTFMFGGS GSRVATVAFLRN
Sbjct: 296 LESESMKGHEASRDPPFRYLNHVRTYPTFMFGGSVGSRVATVAFLRN 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453070|ref|XP_002269621.1| PREDICTED: methyltransferase-like protein 10 isoform 1 [Vitis vinifera] gi|296087211|emb|CBI33585.3| unnamed protein product [Vitis vinifera]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/345 (73%), Positives = 300/345 (86%), Gaps = 7/345 (2%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RLPPE+ ++   + P       DLVSDD+RSVAADSWSIKS+YGSTLDDDQRHADA
Sbjct: 1   MAGIRLPPEDSDIPQARAP----TYADLVSDDDRSVAADSWSIKSDYGSTLDDDQRHADA 56

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           ++AL+S  NFRA SDY+SDK+E D E + SMLGLQSYWD+AYADEL NFREHGH GEVWF
Sbjct: 57  SDALASG-NFRAASDYSSDKDELDSEVVTSMLGLQSYWDAAYADELTNFREHGHTGEVWF 115

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G +VM++V SWTK+LCI ISQGHM NH++D KSEPVE+ +KYLSSWSVLDIGTGNGLLLQ
Sbjct: 116 GVEVMEIVVSWTKNLCIEISQGHMPNHLDDAKSEPVEQGEKYLSSWSVLDIGTGNGLLLQ 175

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240
           EL+KQGFSDLTG DYSE AI+LA+SLA+RDGF+ I FLVDDVL++KLERQFQLV+DKGTL
Sbjct: 176 ELAKQGFSDLTGTDYSEGAIDLARSLADRDGFTYINFLVDDVLESKLERQFQLVIDKGTL 235

Query: 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEH 300
           DAIGLHPDGP+KRIMYWDSVS+LVAPGG+ V+TSCN+TKDEL+ EV + +QR +G SQE 
Sbjct: 236 DAIGLHPDGPIKRIMYWDSVSRLVAPGGIFVVTSCNNTKDELIREVDSYNQRVLGASQEP 295

Query: 301 EI-KDEEACRE-PPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN 343
           +  KD++  R+ PPFRY+NHVR+YPTFMFGGS GSRVATVAFLR+
Sbjct: 296 DTPKDQDVSRDSPPFRYVNHVRSYPTFMFGGSVGSRVATVAFLRS 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508247|ref|XP_003624412.1| Methyltransferase-like protein [Medicago truncatula] gi|355499427|gb|AES80630.1| Methyltransferase-like protein [Medicago truncatula]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/345 (74%), Positives = 297/345 (86%), Gaps = 9/345 (2%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG--DLVSDDERSVAADSWSIKSEYGSTLDDDQRHA 58
           MAG RL PE+ +VS     QQ R     DLVSDD+RS+AADSWSIKSEYGSTLDDDQRHA
Sbjct: 1   MAGIRLQPEDSDVS-----QQARAVALVDLVSDDDRSIAADSWSIKSEYGSTLDDDQRHA 55

Query: 59  DAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEV 118
           DAAEALS+  N RA SDY+SDK+EPD E ++SMLG QSYWD+AY DEL NF EHGHAGEV
Sbjct: 56  DAAEALSNV-NLRAASDYSSDKDEPDAEAVSSMLGFQSYWDAAYTDELTNFHEHGHAGEV 114

Query: 119 WFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLL 178
           WFG +VM+VVASWTK+LCI ISQG + NHV+D+K++  E +DK LSSW+VLDIGTGNGLL
Sbjct: 115 WFGDNVMEVVASWTKTLCIDISQGRLPNHVDDVKADAGELDDKLLSSWNVLDIGTGNGLL 174

Query: 179 LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG 238
           LQEL+KQGFSDLTG DYSE AINLAQSLANRDGF  IKFLVDDVL+TKLE+ FQLVMDKG
Sbjct: 175 LQELAKQGFSDLTGTDYSERAINLAQSLANRDGFPNIKFLVDDVLETKLEQVFQLVMDKG 234

Query: 239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQ 298
           TLDAIGLHPDGP+KR+MYWDSVS+LVAPGG+LV+TSCNSTKDELV EV + +QR+   + 
Sbjct: 235 TLDAIGLHPDGPVKRMMYWDSVSRLVAPGGILVVTSCNSTKDELVQEVESFNQRKSATAP 294

Query: 299 EHEI-KDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 342
           E E+ KD+E+CR+P F+Y++HVRTYPTFMFGGS GSRVATVAFLR
Sbjct: 295 EPEVAKDDESCRDPLFQYVSHVRTYPTFMFGGSVGSRVATVAFLR 339

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574272|ref|XP_002528050.1| conserved hypothetical protein [Ricinus communis] gi|223532511|gb|EEF34300.1| conserved hypothetical protein [Ricinus communis]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/344 (75%), Positives = 290/344 (84%), Gaps = 9/344 (2%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RL PEE ++S QQ        GDLVSDDERSVAADSWSIKS+YGSTLDDDQRHADA
Sbjct: 1   MAGIRLLPEEADLSQQQSRGGA-AGGDLVSDDERSVAADSWSIKSDYGSTLDDDQRHADA 59

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           AEALSSA NFR  SDYNSDKEEPD EG+ SMLGLQSYWDSAYADELANF EHGHAGE+WF
Sbjct: 60  AEALSSATNFRTASDYNSDKEEPDGEGVTSMLGLQSYWDSAYADELANFHEHGHAGEIWF 119

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G+DVMDVV SWTKSLCI ISQ H+ NHV+      +E++DK L  WSVLD+GTGNGLLLQ
Sbjct: 120 GSDVMDVVVSWTKSLCIRISQDHISNHVD------IEQDDKCLPYWSVLDLGTGNGLLLQ 173

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240
           EL+KQGFSDLTG DYSE AI+LA+ LA+RDGFS I FLVDD+L+TKLERQF+LVMDKGTL
Sbjct: 174 ELAKQGFSDLTGADYSEGAIDLARKLADRDGFSNINFLVDDILETKLERQFKLVMDKGTL 233

Query: 241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEH 300
           DAIGLHPDGP+KRIMYWDSVSKLVA GG+LVITSCN+TKDELV EV N +  R  VSQ  
Sbjct: 234 DAIGLHPDGPIKRIMYWDSVSKLVASGGILVITSCNNTKDELVQEVENFNH-RTNVSQGS 292

Query: 301 EI-KDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN 343
           EI KD+ +   P F+Y +HV+TYPTFMFGG+ GSRVATVAFLR+
Sbjct: 293 EISKDQASGDHPIFQYFDHVQTYPTFMFGGAVGSRVATVAFLRS 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4760710|dbj|BAA77395.1| SLL2-S9-protein [Brassica rapa]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/343 (71%), Positives = 281/343 (81%), Gaps = 8/343 (2%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGD-LVSDDERSVAADSWSIKSEYGSTLDDDQRHAD 59
           MAG RL PEEPE +PQQ   Q R   D L SDD+RS+AADSWSIKSEYGSTLDDDQRHAD
Sbjct: 1   MAGIRLAPEEPETTPQQ---QARATTDSLASDDDRSIAADSWSIKSEYGSTLDDDQRHAD 57

Query: 60  AAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVW 119
           AAEALSSA NFR +SDY+SDKEEPD EG  SMLGLQSYWD+AY+DEL+NFREHGH GEVW
Sbjct: 58  AAEALSSA-NFRVSSDYSSDKEEPDAEGGQSMLGLQSYWDAAYSDELSNFREHGHTGEVW 116

Query: 120 FGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLL 179
           FG DVM++V SWTK LC+ ISQ      V D   E  ++ DKYLSSW+VLD+GTGNGLLL
Sbjct: 117 FGDDVMEIVTSWTKDLCVEISQKE--TSVSD-NGEVNDQADKYLSSWNVLDLGTGNGLLL 173

Query: 180 QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 239
            +L+K+GFSDLTG DYSE A+ LAQ L+ RDGF  I+F+VDD+LDTKLERQF+LVMDKGT
Sbjct: 174 HQLAKEGFSDLTGTDYSEGAVELAQHLSQRDGFPNIRFMVDDILDTKLERQFKLVMDKGT 233

Query: 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQE 299
           LDAIGLHPDGP+KR+MYWDSVSKLVAPGG+LVITSCN+TKDEL+ EV N + R+  ++ +
Sbjct: 234 LDAIGLHPDGPVKRVMYWDSVSKLVAPGGILVITSCNNTKDELLEEVENFNMRKSNLTGD 293

Query: 300 HEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 342
              +       PPF YL+HVRTYPTFMFGGS GSRVATVAFLR
Sbjct: 294 VSSEAASGTDHPPFEYLSHVRTYPTFMFGGSVGSRVATVAFLR 336

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445949|ref|XP_004140734.1| PREDICTED: methyltransferase-like protein 10-like [Cucumis sativus] gi|449485456|ref|XP_004157174.1| PREDICTED: methyltransferase-like protein 10-like [Cucumis sativus]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/350 (72%), Positives = 284/350 (81%), Gaps = 13/350 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG---DLVSDDERSVAADSWSIKSEYGSTLDDDQRH 57
           MA  RL PE+ E+      QQ R A    DLVSDD+RSVAADSWSIKSEYGSTLDDDQR+
Sbjct: 1   MAAVRLTPEDAEL-----LQQARAAPSAVDLVSDDDRSVAADSWSIKSEYGSTLDDDQRN 55

Query: 58  ADAAEALSSAANFRANSDYNSDKEE--PDPEGMASMLGLQSYWDSAYADELANFREHGHA 115
           ADAAEALS A N R  SDY+SDK+E  PD E + SMLGLQSYWDS YADEL NFREHGH 
Sbjct: 56  ADAAEALS-AGNLRPASDYSSDKDEMEPDAEAVTSMLGLQSYWDSQYADELTNFREHGHV 114

Query: 116 GEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGN 175
           GEVWFG++VM+ VASWTKSLC  +SQG  LN   ++K+  V++  K+LSSWSVLDIGTGN
Sbjct: 115 GEVWFGSEVMETVASWTKSLCYDVSQGRFLNQAGNVKTLNVDQGSKFLSSWSVLDIGTGN 174

Query: 176 GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM 235
           GLLLQEL+K+GFS+LTG DYSE AI+LA+SLA RDGFS I FLVDDVL+TKLE QFQLV+
Sbjct: 175 GLLLQELAKEGFSNLTGTDYSEGAIDLARSLAERDGFSNINFLVDDVLETKLEGQFQLVV 234

Query: 236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIG 295
           DKGTLDAIGLHPDGP+KRIMYW+SVSKLVAPGG+LVITSCNSTKDELV EV N +QRR+ 
Sbjct: 235 DKGTLDAIGLHPDGPIKRIMYWESVSKLVAPGGVLVITSCNSTKDELVQEVENFNQRRVN 294

Query: 296 VSQEHEIKDEEACRE--PPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN 343
              E E  DE    E  P F+YL+HVRTYPTF FGGS GSRVATVAFLRN
Sbjct: 295 TFAEPESSDETQPEELLPTFQYLSHVRTYPTFTFGGSVGSRVATVAFLRN 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1518113|gb|AAB49423.1| SLL2 [Brassica napus]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/343 (70%), Positives = 280/343 (81%), Gaps = 8/343 (2%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGD-LVSDDERSVAADSWSIKSEYGSTLDDDQRHAD 59
           MAG RL PEEPE +PQQ     R   D L SDD+RS+AADSWSIKSEYGSTLDDDQRHAD
Sbjct: 1   MAGIRLAPEEPETTPQQ---HARATTDSLASDDDRSIAADSWSIKSEYGSTLDDDQRHAD 57

Query: 60  AAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVW 119
           AAEALSSA NFR +SDY+SDKEEPD +G  SMLGLQSYWD+AY+DEL+NFREHGH GEVW
Sbjct: 58  AAEALSSA-NFRVSSDYSSDKEEPDADGGQSMLGLQSYWDAAYSDELSNFREHGHTGEVW 116

Query: 120 FGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLL 179
           FG DVM++V SWTK LC+ ISQ  M   V D   E  ++ DKYLSSW+VLD+GTGN LLL
Sbjct: 117 FGDDVMEIVTSWTKDLCVEISQKEM--SVSD-NGEVNDQADKYLSSWNVLDLGTGNCLLL 173

Query: 180 QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 239
            +L+K+GFSDLTG DYSE A+ LAQ L+ RDGF  I+F+VDD+LDTKLERQF+LVMDKGT
Sbjct: 174 HQLAKEGFSDLTGTDYSEGAVELAQHLSQRDGFPNIRFMVDDILDTKLERQFKLVMDKGT 233

Query: 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQE 299
           LDAIGLHPDGP+KR+MYWDSVSKLVAPGG+LVITSCN+TKDEL+ EV N + R+  ++ +
Sbjct: 234 LDAIGLHPDGPVKRVMYWDSVSKLVAPGGILVITSCNNTKDELLEEVENFNMRKSNLTGD 293

Query: 300 HEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 342
              +       PPF YL+HVRTYPTFMFGGS GSRVATVAFLR
Sbjct: 294 VSSEAASGTDYPPFEYLSHVRTYPTFMFGGSVGSRVATVAFLR 336

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219724|ref|NP_176841.1| putative S locus-linked protein [Arabidopsis thaliana] gi|12597759|gb|AAG60072.1|AC013288_6 pheromone receptor, putative (AR401) [Arabidopsis thaliana] gi|332196423|gb|AEE34544.1| putative S locus-linked protein [Arabidopsis thaliana]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/358 (67%), Positives = 282/358 (78%), Gaps = 17/358 (4%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG-----DLVSDDERSVAADSWSIKSEYGSTLDDDQ 55
           MAG RL PEEPE +PQQ  +            L SDD+RS+AADSWSIKSEYGSTLDDDQ
Sbjct: 1   MAGIRLLPEEPETTPQQQARAAAAVTTTTTDSLASDDDRSIAADSWSIKSEYGSTLDDDQ 60

Query: 56  RHADAAEALSSAANFRANSDYNSDKEEPDPEGMA-SMLGLQSYWDSAYADELANFREHGH 114
           RHADAAEALSSA NFR +SDY+SDKEEPD +G   SMLGLQSYWD+AY+DEL NFREHGH
Sbjct: 61  RHADAAEALSSA-NFRVSSDYSSDKEEPDADGGGQSMLGLQSYWDAAYSDELTNFREHGH 119

Query: 115 AGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTG 174
           AGEVWFG DVM++V SWTK LC+ ISQ +M     D+ +E  ++ DKYLSSW+VLD+GTG
Sbjct: 120 AGEVWFGDDVMEIVTSWTKDLCVEISQRNMSVSENDVTTEVNDQADKYLSSWNVLDLGTG 179

Query: 175 NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV 234
           NGLLL +L+K+GFSDLTG DYS+ A+ LAQ L+ RDGF  I+F+VDD+LDTKLE+QF+LV
Sbjct: 180 NGLLLHQLAKEGFSDLTGTDYSDGAVELAQHLSQRDGFPNIRFMVDDILDTKLEQQFKLV 239

Query: 235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRI 294
           MDKGTLDAIGLHPDGP+KR+MYWDSVSKLVAPGG+LVITSCN TKDELV EV N + R+ 
Sbjct: 240 MDKGTLDAIGLHPDGPVKRVMYWDSVSKLVAPGGILVITSCNHTKDELVEEVENFNIRKS 299

Query: 295 GVSQEH--------EIKDEEACR--EPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 342
            + +              E A R  +PPF YL+HVRTYPTFMF GS GSRVATVAFLR
Sbjct: 300 NLCRGDGNDANNVLSSGSEAASRIDQPPFEYLSHVRTYPTFMFSGSVGSRVATVAFLR 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2033329	358	AR401 [Arabidopsis thaliana (t	0.915	0.877	0.665	3.2e-113
MGI|MGI:1919346	244	Mettl10 "methyltransferase lik	0.349	0.491	0.5	4.9e-38
UNIPROTKB|Q5JPI9	291	METTL10 "Methyltransferase-lik	0.352	0.415	0.495	5.7e-38
ZFIN|ZDB-GENE-050306-30	233	mettl10 "methyltransferase lik	0.341	0.502	0.428	3.6e-36
SGD|S000001326	257	SEE1 "Probable lysine methyltr	0.518	0.692	0.363	9.4e-27
POMBASE|SPBC839.14c	238	SPBC839.14c "methyltransferase	0.516	0.743	0.377	6.2e-24
ASPGD|ASPL0000070685	327	AN4543 [Emericella nidulans (t	0.276	0.290	0.353	1.4e-11
WB|WBGene00017919	236	F29B9.1 [Caenorhabditis elegan	0.527	0.766	0.266	9.6e-09
TAIR|locus:2101861	252	AT3G60910 "AT3G60910" [Arabido	0.346	0.472	0.300	1.8e-08
TAIR|locus:2116174	248	AT4G34360 "AT4G34360" [Arabido	0.311	0.431	0.318	1.3e-07

TAIR|locus:2033329 AR401 [Arabidopsis thaliana (taxid:3702)]

 Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
 Identities = 217/326 (66%), Positives = 256/326 (78%)

Query:    28 LVSDDERSVAADSWSIKSEYGSTLDDDQRHXXXXXXXXXXXXXXXNSDYNSDKEEPDPEG 87
             L SDD+RS+AADSWSIKSEYGSTLDDDQRH               +SDY+SDKEEPD +G
Sbjct:    33 LASDDDRSIAADSWSIKSEYGSTLDDDQRHADAAEALSSANFRV-SSDYSSDKEEPDADG 91

Query:    88 MA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLN 146
                SMLGLQSYWD+AY+DEL NFREHGHAGEVWFG DVM++V SWTK LC+ ISQ +M  
Sbjct:    92 GGQSMLGLQSYWDAAYSDELTNFREHGHAGEVWFGDDVMEIVTSWTKDLCVEISQRNMSV 151

Query:   147 HVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206
                D+ +E  ++ DKYLSSW+VLD+GTGNGLLL +L+K+GFSDLTG DYS+ A+ LAQ L
Sbjct:   152 SENDVTTEVNDQADKYLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSDGAVELAQHL 211

Query:   207 ANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP 266
             + RDGF  I+F+VDD+LDTKLE+QF+LVMDKGTLDAIGLHPDGP+KR+MYWDSVSKLVAP
Sbjct:   212 SQRDGFPNIRFMVDDILDTKLEQQFKLVMDKGTLDAIGLHPDGPVKRVMYWDSVSKLVAP 271

Query:   267 GGLLVITSCNSTKDELVHEVSNLSQRRIGV-----SQEHEIKD---EEACR--EPPFRYL 316
             GG+LVITSCN TKDELV EV N + R+  +     +  + +     E A R  +PPF YL
Sbjct:   272 GGILVITSCNHTKDELVEEVENFNIRKSNLCRGDGNDANNVLSSGSEAASRIDQPPFEYL 331

Query:   317 NHVRTYPTFMFGGSEGSRVATVAFLR 342
             +HVRTYPTFMF GS GSRVATVAFLR
Sbjct:   332 SHVRTYPTFMFSGSVGSRVATVAFLR 357

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:1919346 Mettl10 "methyltransferase like 10" [Mus musculus (taxid:10090)]

 Score = 272 (100.8 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
 Identities = 62/124 (50%), Positives = 82/124 (66%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-- 224
             SVLDIGTGNG+ L EL K GFS++TG+DYS  AI L+ S+  ++G S I   V+D L+  
Sbjct:    82 SVLDIGTGNGVFLVELVKHGFSNITGIDYSPSAIKLSASILEKEGLSNINLKVEDFLNPS 141

Query:   225 TKLERQFQLVMDKGTLDAIGLHPDGPL-KRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 283
             TKL   F + +DKGT DAI L+PD  + KR  Y  S+S+++   G  +ITSCN TK EL+
Sbjct:   142 TKLSG-FHVCVDKGTYDAISLNPDNAIEKRKQYVMSLSRVLEVKGFFLITSCNWTKAELL 200

Query:   284 HEVS 287
                S
Sbjct:   201 DAFS 204

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q5JPI9 METTL10 "Methyltransferase-like protein 10" [Homo sapiens (taxid:9606)]

 Score = 289 (106.8 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 61/123 (49%), Positives = 85/123 (69%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
             SVLDIGTGNG+ L EL+K GFS++TG+DYS  AI L+ S+  ++G S IK  V+D L+  
Sbjct:    82 SVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSIIEKEGLSNIKLKVEDFLNLS 141

Query:   227 LERQ-FQLVMDKGTLDAIGLHPDGPL-KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 284
              +   F + +DKGT DAI L+PD  + KR  Y  S+S+++   G  +ITSCN TK+EL++
Sbjct:   142 TQLSGFHICIDKGTFDAISLNPDNAIEKRKQYVKSLSRVLKVKGFFLITSCNWTKEELLN 201

Query:   285 EVS 287
             E S
Sbjct:   202 EFS 204

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-050306-30 mettl10 "methyltransferase like 10" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
 Identities = 51/119 (42%), Positives = 77/119 (64%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
             ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+ L  ++   +G   I   V+D L+  
Sbjct:    78 AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVEEGLKNINIQVEDFLNPS 137

Query:   227 LE-RQFQLVMDKGTLDAIGLHP-DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 283
              E + F + +DKGT DAI L+P D    +  Y  S+  ++ P G  +ITSCN TK++L+
Sbjct:   138 TELKGFDVCIDKGTFDAISLNPEDREEAKKHYVTSLRAVMRPNGFFIITSCNWTKEQLL 196

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

SGD|S000001326 SEE1 "Probable lysine methyltransferase involved in dimethylation of eEF1A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 251 (93.4 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 77/212 (36%), Positives = 116/212 (54%)

Query:    90 SMLGLQSYWDSAYADELANFREHGH-AGEVWFGADVMDVVASWTKSLCISISQGHMLNH- 147
             S LG + YWD  YA EL NFR +    G+ WF +D              S ++  M++  
Sbjct:    38 SKLGTKKYWDELYALELENFRRNPQDTGDCWF-SD--------------SDAEQKMIDFL 82

Query:   148 VEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSD-LTGVDYSEDAINLAQSL 206
             V+++ +  + EN       SV+D+GTGNG +L EL +  F   L G+DYSE+++ LA ++
Sbjct:    83 VDNIGAYRISENA------SVVDLGTGNGHMLFELHQTEFQGKLVGIDYSEESVKLASNI 136

Query:   207 ANRDGF-SCIKFLVDDVL--DTKLERQFQLVMDKGTLDAI---GLHPDGPLKRI-MYWDS 259
             A   G  + I F   D+   D K   ++ +V+DKGTLDAI   G+  +G L  + +Y   
Sbjct:   137 AEATGVDNFISFQQADIFSGDWK-PGKYDIVLDKGTLDAISLSGMKINGKLDVVDVYAGV 195

Query:   260 VSKLVAPGGLLVITSCNSTKDELVH--EVSNL 289
             V +++   G+ +ITSCN T+DELV   E  NL
Sbjct:   196 VERILKKDGIFLITSCNFTQDELVKIIETDNL 227

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0018027 "peptidyl-lysine dimethylation" evidence=IMP

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IMP

GO:0008168 "methyltransferase activity" evidence=IEA

POMBASE|SPBC839.14c SPBC839.14c "methyltransferase involved in endocytosis (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 242 (90.2 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
 Identities = 77/204 (37%), Positives = 106/204 (51%)

Query:    90 SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 149
             S LG + YWD+ Y  E++NF E    GEVWFG +  + +  W +   IS S       V 
Sbjct:     7 SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLEDH-ISTS----FREVS 61

Query:   150 DLKSEPVEENDKYLSSWSVLDIGTGNGL--LLQELSKQGFS--DLTGVDYSEDAINLAQS 205
             +  + P    D        L  G G+ L  LL+E      S   L GVDYSE AI LA++
Sbjct:    62 E--AAPFRVLD--------LGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLAKN 111

Query:   206 LANRDGFSC-IKFLVDDVL-DTKL-ERQFQLVMDKGTLDAIGLHP---DG-PLKRIMYWD 258
             +A    FS  +KF   D++ D+K   + + L++DKGT DAI L     DG PL  + Y D
Sbjct:   112 IARHRQFSDKVKFQQLDIIKDSKFCSKDWDLILDKGTFDAISLSGELLDGRPLNSV-YVD 170

Query:   259 SVSKLVAPGGLLVITSCNSTKDEL 282
              V  +++P G+ +ITSCN T  EL
Sbjct:   171 RVRGMLSPNGIFLITSCNWTIQEL 194

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006897 "endocytosis" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISO

ASPGD|ASPL0000070685 AN4543 [Emericella nidulans (taxid:162425)]

 Score = 122 (48.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 40/113 (35%), Positives = 58/113 (51%)

Query:   231 FQLVMDKGTLDAIGLHPD-GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL 289
             F +V+DKGT DA+ L  +    +R  Y      LV  GG LV+TSCN T++E+V   ++ 
Sbjct:   231 FDIVLDKGTFDAVSLMVEKSECER--YPGIAGSLVRKGGFLVVTSCNWTEEEIVKWFTS- 287

Query:   290 SQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 342
             ++ +I  S +  +  +             V+ YP F FGG EG  V TV F R
Sbjct:   288 AEIQINGSGKLVVWGK-------------VQ-YPRFRFGGQEGQGVCTVCFQR 326

GO:0005737 "cytoplasm" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IEA

GO:0018027 "peptidyl-lysine dimethylation" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

WB|WBGene00017919 F29B9.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 150 (57.9 bits), Expect = 9.6e-09, P = 9.6e-09
 Identities = 57/214 (26%), Positives = 93/214 (43%)

Query:    78 SDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGAD-----VMDVVASWT 132
             SD  E   E  +S LG + +WD  Y  EL NF++HG  GEVWFG       V  ++ S T
Sbjct:     2 SDMSEQSVEIASSQLGTKDFWDQRYELELKNFKQHGDEGEVWFGTSSETRIVKYLIDSKT 61

Query:   133 ----KSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFS 188
                 K L +    G +L  +     + ++  D Y      +D+        +E  +    
Sbjct:    62 GKDAKILDLGCGNGSVLRKLRSKGFQSLKGVD-YCQK--AVDLSAAASKAEREEEED--E 116

Query:   189 DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPD 248
             +L  +++ +  +++    A  D FS                +F +++DKGT DA+ L  +
Sbjct:   117 ELVDIEFEQ--LDITTPPA--DFFSS---------------KFDVILDKGTWDAMSLSDE 157

Query:   249 GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 282
                +   Y   +   ++ GG  VI SCN T DE+
Sbjct:   158 REARLKAYLGFLDNGLSAGGRFVIFSCNFTFDEM 191

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2101861 AT3G60910 "AT3G60910" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 37/123 (30%), Positives = 60/123 (48%)

Query:   164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 223
             +S  VL +G GN L+ +++ K G+ D+  VD S  AI + Q+         +K++  DV 
Sbjct:    49 TSSRVLMVGCGNSLMSEDMVKDGYEDIMNVDISSVAIEMMQT--KYASVPQLKYMQMDVR 106

Query:   224 DTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281
             D     +  F  ++DKGTLD++    D  L        VS+L+ PGG   + +    K  
Sbjct:   107 DMSYFEDDSFDTIIDKGTLDSLMCGSDALLSASRMLGEVSRLIKPGGTYFLITYGDPKVR 166

Query:   282 LVH 284
             + H
Sbjct:   167 MPH 169

GO:0003824 "catalytic activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2116174 AT4G34360 "AT4G34360" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 37/116 (31%), Positives = 62/116 (53%)

Query:   165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
             S SVL++G GN  L +EL K G  D+T +D S  A+   QS     G+  IK +  D+LD
Sbjct:    51 SSSVLELGCGNSQLCEELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLD 110

Query:   225 TKLERQ-FQLVMDKGTLDAIGLHPDGP-------LKRIMYW-DSVSKLVAPGGLLV 271
                + + F +V++KGT+D + +    P       + ++M   D V +++ P G+ +
Sbjct:   111 LPFDSESFDVVIEKGTMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFI 166

GO:0003824 "catalytic activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_1290084 hypothetical protein (343 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-18
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-12
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	4e-12
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	6e-11
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	2e-10
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	6e-08
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	5e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	3e-06
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	4e-06
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	3e-05
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	5e-05
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	5e-05
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	5e-05
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	5e-05
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	7e-05
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	1e-04
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	3e-04
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	0.001
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	0.001
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	0.002
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	0.003
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	0.003
TIGR04290	226	TIGR04290, meth_Rta_06860, methyltransferase, Rta_	0.003
pfam01564	240	pfam01564, Spermine_synth, Spermine/spermidine syn	0.003
PLN02396	322	PLN02396, PLN02396, hexaprenyldihydroxybenzoate me	0.003

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 14/145 (9%)

Query: 167 SVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
            VLD+G G G L   L+++    +++ G+D SE+AI  A+  A + G+  ++F+  D+ +
Sbjct: 6   KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65

Query: 225 ---TKLERQ-FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280
               +LE   F +V+    L+ +   PD  L+ I       +++ PGG+L+++       
Sbjct: 66  LPQLQLEDNSFDVVISNEVLNHLP-DPDKVLEEI------IRVLKPGGVLIVSDPV-LLS 117

Query: 281 ELVHEVSNLSQRRIGVSQEHEIKDE 305
           EL   + +L +   GV +    K +
Sbjct: 118 ELPALLEDLERLYAGVLEGAIGKKK 142

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD- 224
            VLDIG G G L  EL++    + +TGVD S + + LA+  A       I F+  D  D 
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63

Query: 225 TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275
             L   F  V   G    +          +   D+++ L+ PGG LV+ + 
Sbjct: 64  LDLLEGFDAVFIGGGGGDL----------LELLDALASLLKPGGRLVLNAV 104

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--T 225
           VLD+G G G L   L+    + +TGVD S  A+ LA+  A       ++ L  D  +   
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

Query: 226 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273
           + +  F +++    L  +       L+         +L+ PGG+LV+T
Sbjct: 62  EADESFDVIISDPPLHHLVEDLARFLEEA------RRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K 226
           +LD+G G G +L+ L++ G S +TGVD S++A+ LA+      G   ++F+V D  D   
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP-KVRFVVADARDLPF 59

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGG 268
            E  F LV+       + L    P +        ++L+ PGG
Sbjct: 60  EEGSFDLVI----CAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 143 HMLNHVE-DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           H +N +  D   + + +N K L    VLD+G G GLL + L++ G  ++TG+D SE+ I 
Sbjct: 23  HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIE 81

Query: 202 LAQSLANRDGFSCIKFLVDDV--LDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDS 259
           +A+  A +D    I++    V  L  K  + F +V     L+    H   P +  +   +
Sbjct: 82  VAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE----HVPDP-QAFI--RA 134

Query: 260 VSKLVAPGGLLVITSCNSTK 279
            ++L+ PGG+L  ++ N T 
Sbjct: 135 CAQLLKPGGILFFSTINRTP 154

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 169 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--T 225
           LDIG G G LL+ L +     + TGVD S  A+  A       G      +  DVLD   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 226 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLL 270
                F +V+    L  +   P   L+ +       +L+ PGG+L
Sbjct: 61  LDPGSFDVVVASNVLHHLA-DPRAVLRNLR------RLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 28/112 (25%)

Query: 169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE 228
           LD+G G GLL + L+++G + +TGVD S + + LA+  A        KF+V D  D    
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP------RKFVVGDAEDLPFP 54

Query: 229 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVA-------PGGLLVI 272
              F +V+    L               +     + +        PGG LVI
Sbjct: 55  DESFDVVVSSLVL--------------HHLPDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV 222
              VLD G G+G  L   ++ G  + + GV+   +A  LA+      G +  ++ +V D 
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 223 LDTKLER--QFQLVMDKGTLDAIGLHPDGPLKRIMYW---DSVSKLVAPGGLLVITSCN 276
            +        F LV+  G         D    R +Y     +  +L+ PGG+LV+ +  
Sbjct: 61  RELLELPDGSFDLVL--GNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITPA 117

This family contains methyltransferase domains. Length = 117

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 21/110 (19%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VLDIG G G+LL+ L ++GF D+TGVD S  A+              I  L D      
Sbjct: 25  RVLDIGCGTGILLRLLRERGF-DVTGVDPSPAAVL-------------IFSLFDAPDPAV 70

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276
           L  ++ L+      + +   PD P         + +L+ PGG+L+I++  
Sbjct: 71  LAGKYDLIT---AFEVLEHLPDPP----ALLQQLRELLKPGGVLLISTPL 113

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 165 SWSVLDIGTGNGLL-LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 223
              VLD+G G G+L      +    ++T VD +  A+  A++    +G    +    D+ 
Sbjct: 32  GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLY 91

Query: 224 DTKLERQFQLVM 235
                 +F L++
Sbjct: 92  SAVEPGKFDLII 103

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 21/115 (18%)

Query: 167 SVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVD- 220
            +L+IGT  G     +   L   G   LT ++  E+   +A+      G    I+ L+  
Sbjct: 62  RILEIGTAIGYSALWMALALPDDG--RLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119

Query: 221 ---DVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
              DVL   L+  F LV     +DA             Y +    L+ PGGL+V 
Sbjct: 120 DALDVLSRLLDGSFDLVF----IDA------DKADYPEYLERALPLLRPGGLIVA 164

Length = 219

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 25/161 (15%)

Query: 184 KQGFSDLTGVDYSEDAINLAQ---SLANRDGFSCIKFLVDDVLD--TKLER---QFQLVM 235
             G S++T VD S+ A+  A+    L   DG    +F+V DV     K ER   +F L+ 
Sbjct: 237 LGGASEVTSVDLSKRALEWARENAELNGLDG-DRHRFIVGDVFKWLRKAERRGEKFDLI- 294

Query: 236 DKGTLD--AIGLHPDGPLKRIM--YWDSV---SKLVAPGGLLVITSCNS--TKDELVHEV 286
               LD  +               Y D      +L+APGG LV +SC+   + D  +  +
Sbjct: 295 ---ILDPPSFARSKKQ-EFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEII 350

Query: 287 SNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMF 327
           +  +       +  EI+ E    + P         Y   +F
Sbjct: 351 ARAAAAAGR--RAQEIEGEGQPPDHPRNAQIPETLYLKALF 389

Length = 393

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 44.1 bits (101), Expect = 5e-05
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 168 VLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
           VLDIG G G   LL  L  +G   + GVD S + + LA++ A   G   + F+V D L  
Sbjct: 52  VLDIGCGTGRLALLARLGGRGA-YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG 110

Query: 226 KLERQFQLVMDKGTLDAIGLHPDGPLKRIM-YWDSVSKLVAPGGLLVITSCN 276
            L        D  + D +       L         + +++ PGG LV++   
Sbjct: 111 VLP-----FEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157

Length = 257

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 163 LSSWS-------VLDIGTGNGLLLQELS-KQGFSDLTGVDYSEDAINLAQ-SLANRDGFS 213
           L++++       +LD+G GNG L   L+ +   + + GV+  E+A  +AQ ++A      
Sbjct: 36  LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE 95

Query: 214 CIKFLVDDVLD---TKLERQFQLVM 235
            I+ +  D+ +     +   F L++
Sbjct: 96  RIQVIEADIKEFLKALVFASFDLII 120

Length = 248

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 43.2 bits (103), Expect = 7e-05
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 156 VEENDKYLSS--WSVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209
           VE   + L      VLD+GTG+G     L +E      + +T VD S +A+ +A+  A R
Sbjct: 77  VEAALERLKKGPLRVLDLGTGSGAIALALAKERPD---ARVTAVDISPEALAVARKNAAR 133

Query: 210 DGFSCIKFLVDDVLDTKLERQFQLV 234
            G   ++FL  D  +     +F L+
Sbjct: 134 LGLDNVEFLQSDWFEPLPGGKFDLI 158

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 26/146 (17%)

Query: 143 HMLNHV-EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           H +N +  D   E        L    VLD+G G G+L + L++ G S +TG+D SE  I 
Sbjct: 38  HKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIE 95

Query: 202 LAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL--------HPDGPLKR 253
           +A+  A   G +         +D +      L    G  D +           P+  L+ 
Sbjct: 96  VAKLHALESGVN---------IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRA 146

Query: 254 IMYWDSVSKLVAPGGLLVITSCNSTK 279
                   KLV PGG+L +++ N T 
Sbjct: 147 CA------KLVKPGGILFLSTINRTL 166

Length = 243

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 143 HMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 202
           H +N    L+   + E+   L    VLD+G G G+L + +++ G  D+TG+D SE+ I +
Sbjct: 30  HRINP---LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV 85

Query: 203 AQ 204
           A+
Sbjct: 86  AR 87

Length = 233

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 40.1 bits (95), Expect = 0.001
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 167 SVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 222
            VLD+GTG+G     L +E      +++T VD S +A+ +A+  A     + ++FL  D 
Sbjct: 111 RVLDLGTGSGAIALALAKERPD---AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW 167

Query: 223 LDTKLERQFQLV 234
            +     +F L+
Sbjct: 168 FEPLPGGRFDLI 179

Length = 275

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            +LD+GTG+G +   L+K+G  +++  VD S DA+ LA+  A R+G   +  +  D+ + 
Sbjct: 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE- 171

Query: 226 KLERQFQLV 234
            L  +F L+
Sbjct: 172 PLRGKFDLI 180

Length = 280

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           VL+IG G GL+   L  +G   +   D +  A+   +  A  +    +  ++ D+    +
Sbjct: 23  VLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNVG-LDVVMTDLFKG-V 79

Query: 228 ERQFQLVM----------DKGTLDAIGLHPDGPLKRIM----YWDSVSKLVAPGG--LLV 271
             +F +++          D    D + +  DG          + D + +++  GG   L+
Sbjct: 80  RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139

Query: 272 ITSCNSTKDEL 282
            +S N   D  
Sbjct: 140 QSSLNGEPDTF 150

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVL 223
             VL++GTG+G++    +K G   + GVD +  A+  A+  A  +      ++ +  D+ 
Sbjct: 25  DRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF 83

Query: 224 DTKLERQFQLV 234
           +     +F ++
Sbjct: 84  EPFRGDKFDVI 94

Length = 188

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-LANRDGFSCIKFLVDD 221
           L    VLD G G GLL  EL+K+G + +  VD SE  + +A++    RD    ++F V+D
Sbjct: 54  LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND 112

Query: 222 VLDTKLERQFQLV--MD 236
           +L   L  +F +V  MD
Sbjct: 113 LL--SLCGEFDIVVCMD 127

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-LANRDGFSCIKFLVDD 221
           LS WSVLDIG   G    E+ ++G   + G+D   D   LAQ+  A     + I+F    
Sbjct: 48  LSGWSVLDIGCNAGFYSIEMKRRGAGRVLGID--SDPRYLAQARFAAEVLGADIEFRQMS 105

Query: 222 VLDT-KLERQFQLVMDKGTL 240
           V D  +L  +F LV+  G L
Sbjct: 106 VYDLGRLGERFDLVLFMGVL 125

Members of this family are methyltransferases that mark a widely distributed large conserved gene neighborhood of unknown function. It appears most common in soil and rhizosphere bacteria. Length = 226

>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 46/180 (25%)

Query: 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            VL IG G+G  L+E+ K      +T V+  E  I               KFL       
Sbjct: 78  KVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEF-----------SKKFLPSLAGGF 126

Query: 226 KLERQFQLVMDKG---------TLDAI---GLHPDGP---LKRIMYWDSVSKLVAPGGLL 270
              R  ++V+  G           D I      P GP   L    ++D + + +   G+ 
Sbjct: 127 DDPR-VKVVIGDGFKFLKDYLVEFDVIIVDSTDPVGPAENLFSKEFYDLLKRALKEDGVF 185

Query: 271 VIT--SCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFG 328
           V    S     + +++ + N  +                       Y+  V TYP+  +G
Sbjct: 186 VTQAESPWLHLELIINILKNGKK---------------VFPVVMP-YVVPVPTYPSGGWG 229

Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. Length = 240

>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase

 Score = 38.6 bits (89), Expect = 0.003
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK 226
            +DIG G GLL + L++ G + +TGVD  +  + +A+  A+ D   S I++L        
Sbjct: 135 FIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA 193

Query: 227 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278
            E R+F  V+   +L+ I  H   P +   +  S+S L  P G  V+++ N T
Sbjct: 194 DEGRKFDAVL---SLEVIE-HVANPAE---FCKSLSALTIPNGATVLSTINRT 239

Length = 322

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
KOG1271	227	consensus Methyltransferases [General function pre	100.0
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.84
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.81
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.81
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.8
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.77
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.77
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.73
KOG2361	264	consensus Predicted methyltransferase [General fun	99.73
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.72
PRK11207	197	tellurite resistance protein TehB; Provisional	99.72
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.7
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.7
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.69
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.69
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.69
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.68
PRK12335	287	tellurite resistance protein TehB; Provisional	99.67
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.67
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.66
PLN02244	340	tocopherol O-methyltransferase	99.66
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.66
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.65
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.65
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.65
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.64
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.64
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.64
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.63
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.63
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.62
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.61
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.61
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.61
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.6
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.6
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.59
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.59
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.58
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.58
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.58
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.58
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.58
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.57
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.57
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.57
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.56
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.56
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.56
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.56
PLN02336	475	phosphoethanolamine N-methyltransferase	99.55
PRK05785	226	hypothetical protein; Provisional	99.55
COG4123	248	Predicted O-methyltransferase [General function pr	99.55
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.55
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.54
PRK14967	223	putative methyltransferase; Provisional	99.54
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.54
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.53
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.52
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.52
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.51
KOG4300	252	consensus Predicted methyltransferase [General fun	99.51
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.5
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.49
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.49
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.49
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.49
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.49
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.49
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.49
PLN02490	340	MPBQ/MSBQ methyltransferase	99.49
PRK08317	241	hypothetical protein; Provisional	99.48
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.48
PRK14968	188	putative methyltransferase; Provisional	99.48
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.47
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.47
PRK06922	677	hypothetical protein; Provisional	99.47
COG2890	280	HemK Methylase of polypeptide chain release factor	99.47
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.46
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.46
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.45
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.45
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.45
PRK07402	196	precorrin-6B methylase; Provisional	99.44
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.44
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.44
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.44
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.44
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.44
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.43
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.43
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.42
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.42
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.42
PRK04266	226	fibrillarin; Provisional	99.41
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.41
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.41
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.41
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.41
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.41
PLN03075	296	nicotianamine synthase; Provisional	99.4
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.4
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.39
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.37
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.36
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.35
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.35
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.35
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.35
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.35
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.35
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.34
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.34
PLN02336	475	phosphoethanolamine N-methyltransferase	99.34
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.33
TIGR03438	301	probable methyltransferase. This model represents	99.33
TIGR00438	188	rrmJ cell division protein FtsJ.	99.32
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.32
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.32
PRK06202	232	hypothetical protein; Provisional	99.31
KOG2899	288	consensus Predicted methyltransferase [General fun	99.31
PRK00811	283	spermidine synthase; Provisional	99.3
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.3
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.29
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.28
PHA03411	279	putative methyltransferase; Provisional	99.28
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.27
KOG2904	328	consensus Predicted methyltransferase [General fun	99.27
PRK04457	262	spermidine synthase; Provisional	99.26
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.26
PHA03412	241	putative methyltransferase; Provisional	99.25
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.23
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.22
PLN02672	1082	methionine S-methyltransferase	99.22
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.22
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.21
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.21
PTZ00146	293	fibrillarin; Provisional	99.19
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.18
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.18
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.16
PLN02366	308	spermidine synthase	99.15
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.15
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.13
PRK01581	374	speE spermidine synthase; Validated	99.11
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.1
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.09
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.09
KOG3010	261	consensus Methyltransferase [General function pred	99.08
PLN02476	278	O-methyltransferase	99.07
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.05
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.05
COG4122	219	Predicted O-methyltransferase [General function pr	99.05
KOG2352	482	consensus Predicted spermine/spermidine synthase [	99.04
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.04
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.03
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.03
PRK03612	521	spermidine synthase; Provisional	99.03
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.03
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.02
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.0
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.99
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.99
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.95
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.94
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.94
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.93
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.93
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.93
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.9
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.9
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.9
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.9
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.89
COG2520	341	Predicted methyltransferase [General function pred	98.88
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.88
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.88
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.86
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.85
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.85
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.84
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.83
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.83
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.83
PLN02823	336	spermine synthase	98.81
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.8
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.79
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.77
PRK04148	134	hypothetical protein; Provisional	98.76
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.75
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.73
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.71
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.7
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.69
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.67
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.65
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.65
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.63
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.63
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.62
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.59
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.59
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.57
COG2521	287	Predicted archaeal methyltransferase [General func	98.56
KOG2940	325	consensus Predicted methyltransferase [General fun	98.54
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.54
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.53
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.51
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.5
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.48
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.47
KOG1331	293	consensus Predicted methyltransferase [General fun	98.46
PRK00536	262	speE spermidine synthase; Provisional	98.46
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.45
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.44
KOG2730	263	consensus Methylase [General function prediction o	98.4
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.39
COG3897	218	Predicted methyltransferase [General function pred	98.37
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.36
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.33
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.33
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.3
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.29
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.26
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.24
COG4076	252	Predicted RNA methylase [General function predicti	98.23
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.22
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.21
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.21
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.2
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.19
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.18
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.16
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.05
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.02
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.0
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.98
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.97
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.95
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.95
COG0286	489	HsdM Type I restriction-modification system methyl	97.91
PF13679	141	Methyltransf_32: Methyltransferase domain	97.89
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.86
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.85
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.82
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.8
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.75
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.71
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.66
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.66
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.64
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.64
PRK10742	250	putative methyltransferase; Provisional	97.62
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.62
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.53
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.49
COG4798	238	Predicted methyltransferase [General function pred	97.42
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.39
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.37
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.29
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.27
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.25
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.25
KOG3115	249	consensus Methyltransferase-like protein [General	97.19
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.12
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.11
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.07
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.85
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.84
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.84
PF03269	177	DUF268: Caenorhabditis protein of unknown function	96.75
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.75
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.74
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.71
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.7
PHA01634	156	hypothetical protein	96.64
KOG1227	351	consensus Putative methyltransferase [General func	96.6
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.57
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.47
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.39
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.39
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.27
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.27
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.98
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.96
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.96
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.93
PRK11524	284	putative methyltransferase; Provisional	95.79
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.71
COG1568	354	Predicted methyltransferases [General function pre	95.66
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.59
PRK13699	227	putative methylase; Provisional	95.49
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.41
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.39
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.39
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.36
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.22
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.16
COG1565	370	Uncharacterized conserved protein [Function unknow	95.14
KOG2920	282	consensus Predicted methyltransferase [General fun	95.11
TIGR00497	501	hsdM type I restriction system adenine methylase (	94.96
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.86
PRK10458	467	DNA cytosine methylase; Provisional	94.83
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.21
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	94.14
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	93.88
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	93.44
KOG2078	495	consensus tRNA modification enzyme [RNA processing	93.43
COG1255	129	Uncharacterized protein conserved in archaea [Func	93.19
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	93.12
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	93.06
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.9
COG4301	321	Uncharacterized conserved protein [Function unknow	92.63
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	92.52
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	92.03
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	91.75
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.7
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.53
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	91.5
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.46
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.2
PTZ00357	1072	methyltransferase; Provisional	91.13
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	90.91
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.55
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	90.45
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	90.36
KOG3924	419	consensus Putative protein methyltransferase invol	90.08
PRK06701	290	short chain dehydrogenase; Provisional	90.01
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	89.74
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	89.7
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	89.6
PRK08265	261	short chain dehydrogenase; Provisional	89.38
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	89.05
PRK05876	275	short chain dehydrogenase; Provisional	88.99
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	88.88
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	88.86
PRK07109	334	short chain dehydrogenase; Provisional	88.66
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	88.59
PRK12939	250	short chain dehydrogenase; Provisional	88.51
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	88.45
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.37
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.25
KOG2912	419	consensus Predicted DNA methylase [Function unknow	87.99
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	87.99
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	87.95
PRK13699	227	putative methylase; Provisional	87.91
PRK11524	284	putative methyltransferase; Provisional	87.83
PRK06194	287	hypothetical protein; Provisional	87.6
PRK07523	255	gluconate 5-dehydrogenase; Provisional	87.58
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	87.42
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	87.34
PRK08589	272	short chain dehydrogenase; Validated	87.32
PRK08324	681	short chain dehydrogenase; Validated	87.13
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	87.0
PRK08213	259	gluconate 5-dehydrogenase; Provisional	86.99
PRK07576	264	short chain dehydrogenase; Provisional	86.92
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	86.91
PRK07806	248	short chain dehydrogenase; Provisional	86.61
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	86.54
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	86.4
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	86.11
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	86.03
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	85.89
PRK05650	270	short chain dehydrogenase; Provisional	85.78
PRK09242	257	tropinone reductase; Provisional	85.75
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	85.65
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.62
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	85.43
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	85.36
PRK08085	254	gluconate 5-dehydrogenase; Provisional	85.14
PRK09072	263	short chain dehydrogenase; Provisional	85.06
PRK07417	279	arogenate dehydrogenase; Reviewed	84.98
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	84.91
PRK07102	243	short chain dehydrogenase; Provisional	84.87
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	84.76
PRK06181	263	short chain dehydrogenase; Provisional	84.35
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	84.3
PRK12937	245	short chain dehydrogenase; Provisional	84.07
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	84.01
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	83.94
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	83.92
PRK06128	300	oxidoreductase; Provisional	83.63
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	83.54
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	83.52
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	83.31
PLN02740	381	Alcohol dehydrogenase-like	83.31
COG2933	358	Predicted SAM-dependent methyltransferase [General	83.3
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	83.07
PRK08226	263	short chain dehydrogenase; Provisional	83.04
PRK07904	253	short chain dehydrogenase; Provisional	82.97
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	82.89
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	82.84
PRK05872	296	short chain dehydrogenase; Provisional	82.8
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.65
PRK07832	272	short chain dehydrogenase; Provisional	82.59
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	82.55
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	82.48
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	81.95
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	81.8
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	81.6
PRK08339	263	short chain dehydrogenase; Provisional	81.41
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	81.39
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.28
PRK07985	294	oxidoreductase; Provisional	81.25
PRK08703	239	short chain dehydrogenase; Provisional	81.16
PRK05993	277	short chain dehydrogenase; Provisional	81.15
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	81.06
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.05
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.91
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	80.87
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.86
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	80.81
PRK06125	259	short chain dehydrogenase; Provisional	80.8
PRK09291	257	short chain dehydrogenase; Provisional	80.54
PRK03659	601	glutathione-regulated potassium-efflux system prot	80.47
PLN02827	378	Alcohol dehydrogenase-like	80.31
PRK06182	273	short chain dehydrogenase; Validated	80.18

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=100.00  E-value=2.1e-41  Score=278.19  Aligned_cols=222  Identities=59%  Similarity=0.968  Sum_probs=196.4

Q ss_pred             CCCCCCCCCCCCCcCCcHHhHHHHHHHHHHhhhhcCCcceEEeCCchhHHHHHHHhhhhhccccCcccCccccccccchh
Q 019324           78 SDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVE  157 (343)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~Wd~~y~~~~~~f~~~~~~~~~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~  157 (343)
                      ++.+++ .++..|++|+++|||+.|+.+..||.++++.|++||+++..+++..|+...+. +.+  +.            
T Consensus         2 sdm~~~-adl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~-~~r--v~------------   65 (227)
T KOG1271|consen    2 SDMSEP-ADLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIV-ISR--VS------------   65 (227)
T ss_pred             Cccccc-ccccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhh-hhh--hc------------
Confidence            344555 56999999999999999999999999999999999999999999999988763 111  00            


Q ss_pred             hhhccCCCCeEEEEccCccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCc-cCCCccEE
Q 019324          158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLV  234 (343)
Q Consensus       158 ~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~-~~~~fD~V  234 (343)
                           ....+|||+|||+|.++..|++.|+. .++|+|+|+.+++.|+..++..++++ |+|.+.|+.+.. ..+.||+|
T Consensus        66 -----~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlv  140 (227)
T KOG1271|consen   66 -----KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLV  140 (227)
T ss_pred             -----ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEE
Confidence                 22349999999999999999999876 59999999999999999999999876 999999999965 47899999


Q ss_pred             EECccccccccCCCChhhH-HHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhhccccccccchhhhhcccCCCCe
Q 019324          235 MDKGTLDAIGLHPDGPLKR-IMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPF  313 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~-~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  313 (343)
                      +.++++++|.++|+.+..+ ..++..+.++|+|||+++|++||++.+++++.+..                      .+|
T Consensus       141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~----------------------~~f  198 (227)
T KOG1271|consen  141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN----------------------FNF  198 (227)
T ss_pred             eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc----------------------CCe
Confidence            9999999999999887655 67899999999999999999999999999998873                      348


Q ss_pred             eEecccccCCcccccCccCeeEeEEEEeeC
Q 019324          314 RYLNHVRTYPTFMFGGSEGSRVATVAFLRN  343 (343)
Q Consensus       314 ~~~~~~~~~p~~~f~g~~g~~v~~v~f~r~  343 (343)
                      +++..++. |.|+|+|+.|+++++|+|+||
T Consensus       199 ~~~~tvp~-ptF~FgG~~G~tvt~vaF~~k  227 (227)
T KOG1271|consen  199 EYLSTVPT-PTFMFGGSVGSTVTSVAFLRK  227 (227)
T ss_pred             EEEEeecc-ceEEeccccccEEEEEEEecC
Confidence            88888885 699999999999999999986

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=1.5e-20  Score=170.24  Aligned_cols=211  Identities=20%  Similarity=0.287  Sum_probs=154.6

Q ss_pred             cccceeecccCCCCChhhhhhhHHHHHHhcccccccCCCCCCCCCCCCCCCCCcCCcHHhHHHHHHHHHHhhhhcCCcce
Q 019324           38 ADSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGE  117 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wd~~y~~~~~~f~~~~~~~~  117 (343)
                      -+...++++|....+.++..+.....+......     +.....+          -..+-|...|+    .++++-+.++
T Consensus        53 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------~~e~DW~~~wk----~~~~P~rig~  113 (300)
T COG2264          53 WDGVKVKALFPADTDLALLLAELEALLALLELF-----AHVIEQE----------EDEEDWEREWK----KYFHPVRIGE  113 (300)
T ss_pred             cccceeEeeecccchHHHHHHHHHHHhcccccc-----cceeEee----------cChHHHHHHHH----hcCCcEEeee
Confidence            344468899999998888888877777662221     1111111          11222666555    5555555555


Q ss_pred             E-EeCCchhHHHHHHH------hhhhhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEEccCccHHHHHHHhcCCC
Q 019324          118 V-WFGADVMDVVASWT------KSLCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFS  188 (343)
Q Consensus       118 ~-wf~~~~~~~~~~w~------~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~  188 (343)
                      . |..       +.|.      .+.++.+.+++.++++.| ++.+|+++++.. .++.+|||+|||+|.+++..++.|+.
T Consensus       114 ~f~I~-------Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~  186 (300)
T COG2264         114 RFVIV-------PSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAK  186 (300)
T ss_pred             eEEEC-------CCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCc
Confidence            2 222       2344      356688999999999999 999999999877 88999999999999999999999998


Q ss_pred             cEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCC
Q 019324          189 DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG  267 (343)
Q Consensus       189 ~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg  267 (343)
                      +++|+|++|.+++.+++|+..|+++. +.....+.......++||+|++|-..+-+          ..+...+.++||||
T Consensus       187 ~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl----------~~La~~~~~~lkpg  256 (300)
T COG2264         187 KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVL----------VELAPDIKRLLKPG  256 (300)
T ss_pred             eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHH----------HHHHHHHHHHcCCC
Confidence            99999999999999999999998853 33444444444445799999998654333          46779999999999


Q ss_pred             cEEEEEecCCChHHHHH
Q 019324          268 GLLVITSCNSTKDELVH  284 (343)
Q Consensus       268 G~lii~~~~~~~~~~~~  284 (343)
                      |+++++..-....+.+.
T Consensus       257 g~lIlSGIl~~q~~~V~  273 (300)
T COG2264         257 GRLILSGILEDQAESVA  273 (300)
T ss_pred             ceEEEEeehHhHHHHHH
Confidence            99999987666544433

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.81  E-value=8.6e-20  Score=161.32  Aligned_cols=114  Identities=21%  Similarity=0.365  Sum_probs=101.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||||.++..+++. |..+|+|+|+|+.|++.+++++...+..+++|+++|+..+++ +++||+|.+...+
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence            36899999999999999999998 545999999999999999999998777679999999999997 7999999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  283 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~  283 (343)
                      ..+       .+..+.|++++|+|||||++++...........
T Consensus       130 rnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~  165 (238)
T COG2226         130 RNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVL  165 (238)
T ss_pred             hcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence            888       477789999999999999999987776554433

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.81  E-value=5.4e-20  Score=168.31  Aligned_cols=170  Identities=21%  Similarity=0.345  Sum_probs=120.1

Q ss_pred             HHhHHHHHHHHHHhhhhcCCcce-EEeCCchhHHHHHHHhhhhhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEE
Q 019324           95 QSYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWTKSLCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDI  171 (343)
Q Consensus        95 ~~~Wd~~y~~~~~~f~~~~~~~~-~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDi  171 (343)
                      .+-|...|++....+.    .+. .|.-+. .+....-..+..+.+.+++.++++.| ++++|+++++.. .++.+|||+
T Consensus        94 ~~dW~~~Wk~~~~P~~----vg~~~~I~P~-w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDv  168 (295)
T PF06325_consen   94 EEDWEEAWKKYFKPIR----VGDRLVIVPS-WEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDV  168 (295)
T ss_dssp             HHCHHHHHHHH---EE----ECTTEEEEET-T----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEE
T ss_pred             cccchHHHHhcCccEE----ECCcEEEECC-CcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence            4458888776555544    333 222111 11111122344578899999999999 999999999877 678899999


Q ss_pred             ccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccccCCCChh
Q 019324          172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL  251 (343)
Q Consensus       172 GcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~  251 (343)
                      |||+|.+++..++.|+.+|+|+|++|.+++.|++|+..+++.. .+......+ ...++||+|++|-..+.+        
T Consensus       169 G~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~-~~~~~~dlvvANI~~~vL--------  238 (295)
T PF06325_consen  169 GCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED-LVEGKFDLVVANILADVL--------  238 (295)
T ss_dssp             S-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC-TCCS-EEEEEEES-HHHH--------
T ss_pred             CCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc-cccccCCEEEECCCHHHH--------
Confidence            9999999999999998899999999999999999999999854 333332222 234899999998765443        


Q ss_pred             hHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          252 KRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       252 ~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                        ..++..+.++|+|||+++++..-.....
T Consensus       239 --~~l~~~~~~~l~~~G~lIlSGIl~~~~~  266 (295)
T PF06325_consen  239 --LELAPDIASLLKPGGYLILSGILEEQED  266 (295)
T ss_dssp             --HHHHHHCHHHEEEEEEEEEEEEEGGGHH
T ss_pred             --HHHHHHHHHhhCCCCEEEEccccHHHHH
Confidence              4677899999999999999877665443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.80  E-value=2.7e-19  Score=159.46  Aligned_cols=151  Identities=24%  Similarity=0.384  Sum_probs=91.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||||.++..+++. + ..+|+|+|+|+.|++.|+++....+..+|+++++|+.++++ +++||+|++...
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg  125 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG  125 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence            56889999999999999999886 3 24899999999999999999998877799999999999986 689999999988


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhhccccccccchhhhhcccCCCCeeEecc-
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNH-  318 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-  318 (343)
                      +..+       .+....+++++|+|||||++++...+.....+...+..+....    -.|............|.|+.. 
T Consensus       126 lrn~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~----ilP~~g~l~~~~~~~Y~yL~~S  194 (233)
T PF01209_consen  126 LRNF-------PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKY----ILPLIGRLLSGDREAYRYLPES  194 (233)
T ss_dssp             GGG--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------------
T ss_pred             HHhh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecc----cccccccccccccccccccccc
Confidence            8777       3566789999999999999999887777666666554333222    234444334444456777666 


Q ss_pred             cccCCc
Q 019324          319 VRTYPT  324 (343)
Q Consensus       319 ~~~~p~  324 (343)
                      +..||.
T Consensus       195 i~~f~~  200 (233)
T PF01209_consen  195 IRRFPS  200 (233)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            555553

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.77  E-value=5.4e-18  Score=133.94  Aligned_cols=108  Identities=31%  Similarity=0.512  Sum_probs=88.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccC-CCCccCCCccEEEECc-c
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDV-LDTKLERQFQLVMDKG-T  239 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~-~~~~~~~~fD~V~~~~-~  239 (343)
                      |+.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++...+. ++++++++|+ ......+.||+|++.. +
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            4679999999999999999993 334899999999999999999955544 6899999999 4444567899999998 5


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++++.    ...+...+++++.+.|+|||++++.++
T Consensus        81 ~~~~~----~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   81 LHFLL----PLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             GGGCC----HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             ccccc----chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            55342    114667889999999999999999764

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.77  E-value=1.2e-18  Score=151.50  Aligned_cols=114  Identities=31%  Similarity=0.475  Sum_probs=100.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC-CCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||.|.++..||+.|+ .|+|+|+++.+|+.|+..+...++ ++++.+..+.++... ++||+|+|..+++
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            4688999999999999999999996 899999999999999999999887 677888877776543 7999999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHH
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  285 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~  285 (343)
                      |+       .+...+++++.+++||||+++++++|.+.......
T Consensus       136 Hv-------~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~  172 (243)
T COG2227         136 HV-------PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA  172 (243)
T ss_pred             cc-------CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHH
Confidence            99       56667999999999999999999999986554443

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.73  E-value=3.5e-17  Score=136.84  Aligned_cols=107  Identities=33%  Similarity=0.555  Sum_probs=93.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHh-cC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSK-QG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~-~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~  238 (343)
                      .++.+|||+|||+|.++..+++ .+ ..+++|+|+|+.|++.|+++++..+.++++|+++|+.+++  +.+.||+|++..
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence            4578999999999999999994 32 3489999999999999999999999889999999999965  337999999999


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++++       .+...+++++.++|++||++++..+.
T Consensus        82 ~l~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHF-------PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99877       46667899999999999999998877

...

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.73  E-value=1.1e-17  Score=144.73  Aligned_cols=147  Identities=22%  Similarity=0.293  Sum_probs=115.9

Q ss_pred             CcHHhHHHHHHHHHHhhhhcCCcceEEeCCchhHHHHHHHhhhhhccccCcccCccccccccchhhhhccCCCCeEEEEc
Q 019324           93 GLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIG  172 (343)
Q Consensus        93 ~~~~~Wd~~y~~~~~~f~~~~~~~~~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiG  172 (343)
                      .++.|||.+|..+.++|+++++                |+...+.++....                 . ....+|||||
T Consensus        34 ~~~k~wD~fy~~~~~rFfkdR~----------------wL~~Efpel~~~~-----------------~-~~~~~ilEvG   79 (264)
T KOG2361|consen   34 EASKYWDTFYKIHENRFFKDRN----------------WLLREFPELLPVD-----------------E-KSAETILEVG   79 (264)
T ss_pred             chhhhhhhhhhhccccccchhH----------------HHHHhhHHhhCcc-----------------c-cChhhheeec
Confidence            5789999999999999997766                6655544333200                 0 2233899999


Q ss_pred             cCccHHHHHHHhcCC---CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----cCCCccEEEECccccccc
Q 019324          173 TGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       173 cG~G~~~~~la~~g~---~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~V~~~~~l~~i~  244 (343)
                      ||.|+...++.+...   -.|+++|+||.+|+..+++..... .++...+.|+....     ..+++|+|++..++.+|.
T Consensus        80 CGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~  158 (264)
T KOG2361|consen   80 CGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIH  158 (264)
T ss_pred             cCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEeccC
Confidence            999999999988632   279999999999999999877665 47888888887754     258999999999999983


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                           +......+++++++|||||.+++-.+....
T Consensus       159 -----pek~~~a~~nl~~llKPGG~llfrDYg~~D  188 (264)
T KOG2361|consen  159 -----PEKMQSVIKNLRTLLKPGGSLLFRDYGRYD  188 (264)
T ss_pred             -----hHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence                 355667889999999999999998766543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.72  E-value=3.8e-17  Score=150.71  Aligned_cols=133  Identities=22%  Similarity=0.292  Sum_probs=108.4

Q ss_pred             hhhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC
Q 019324          135 LCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  212 (343)
Q Consensus       135 ~~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~  212 (343)
                      ....+.+++.++++.| ++.+++..+... .++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|++|...+++
T Consensus       128 ~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~  207 (288)
T TIGR00406       128 LIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV  207 (288)
T ss_pred             EEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            4467889999999988 778888887754 57899999999999999999988877999999999999999999998887


Q ss_pred             C-ceEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          213 S-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       213 ~-~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      . ++.+...+.... ..++||+|+++...+.          ...++.++.++|||||+++++.....
T Consensus       208 ~~~~~~~~~~~~~~-~~~~fDlVvan~~~~~----------l~~ll~~~~~~LkpgG~li~sgi~~~  263 (288)
T TIGR00406       208 SDRLQVKLIYLEQP-IEGKADVIVANILAEV----------IKELYPQFSRLVKPGGWLILSGILET  263 (288)
T ss_pred             CcceEEEecccccc-cCCCceEEEEecCHHH----------HHHHHHHHHHHcCCCcEEEEEeCcHh
Confidence            4 466676664332 3578999999865432          34678999999999999999876543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.72  E-value=8.4e-17  Score=140.34  Aligned_cols=105  Identities=19%  Similarity=0.293  Sum_probs=91.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..|++.|. +|+|+|+|+.|++.++++....++.++++.+.|+.+..++++||+|+++.++++
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~  107 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF  107 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence            4568999999999999999999976 899999999999999999988887779999999988766778999999988876


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +.     +.....+++++.++|||||.+++.
T Consensus       108 ~~-----~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        108 LE-----AKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CC-----HHHHHHHHHHHHHHcCCCcEEEEE
Confidence            52     346678999999999999996653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.70  E-value=1.8e-16  Score=139.49  Aligned_cols=106  Identities=22%  Similarity=0.200  Sum_probs=85.8

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH------------cCCCceEEEEccCCCCcc--CC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKL--ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~------------~~~~~i~~~~~D~~~~~~--~~  229 (343)
                      ++.+|||+|||.|..+..|+++|+ +|+|+|+|+.+++.+.+....            ....+++++++|+.++..  .+
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            467999999999999999999998 899999999999986442211            011368999999998764  36


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .||.|+...++.++.     +..+..+++.+.++|||||++++.+.
T Consensus       113 ~fD~i~D~~~~~~l~-----~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       113 PVDAVYDRAALIALP-----EEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             CcCEEEechhhccCC-----HHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            799999998887763     46677899999999999998776544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.70  E-value=1.1e-16  Score=121.89  Aligned_cols=94  Identities=29%  Similarity=0.501  Sum_probs=81.7

Q ss_pred             EEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccccccCC
Q 019324          169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHP  247 (343)
Q Consensus       169 LDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~i~~~~  247 (343)
                      ||+|||+|..+..+++.+..+|+|+|+|+.+++.++++....   ++.+.++|+..+++ +++||+|++..+++++    
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS----
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec----
Confidence            899999999999999994459999999999999999987653   46699999999985 6899999999999988    


Q ss_pred             CChhhHHHHHHHHhhccCCCcEEEE
Q 019324          248 DGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       248 ~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                         .+...+++++.|+|||||+++|
T Consensus        74 ---~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 ---EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             ---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---cCHHHHHHHHHHHcCcCeEEeC
Confidence               5778899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.69  E-value=4.4e-16  Score=141.61  Aligned_cols=115  Identities=21%  Similarity=0.334  Sum_probs=94.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHH---cCCCceEEEEccCCCCcc-CCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANR---DGFSCIKFLVDDVLDTKL-ERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~---~~~~~i~~~~~D~~~~~~-~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++. +. .+|+|+|+|+.|++.|+++...   ...++++++++|+.++++ +++||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            45789999999999999999876 32 4899999999999999887532   223579999999998876 578999999


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                      +.+++++       .+...+++++.|+|||||++++............
T Consensus       152 ~~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~  192 (261)
T PLN02233        152 GYGLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTT  192 (261)
T ss_pred             ecccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHH
Confidence            9988877       3566789999999999999999877665444333

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.69  E-value=1.9e-16  Score=147.33  Aligned_cols=111  Identities=27%  Similarity=0.448  Sum_probs=95.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++....+. .++.++++|+.+++. +++||+|++..++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            4567999999999999999998875 899999999999999988765543 479999999888754 5789999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      +|+       .+...+++++.++|||||.+++.+.+.....
T Consensus       209 eHv-------~d~~~~L~~l~r~LkPGG~liist~nr~~~~  242 (322)
T PLN02396        209 EHV-------ANPAEFCKSLSALTIPNGATVLSTINRTMRA  242 (322)
T ss_pred             Hhc-------CCHHHHHHHHHHHcCCCcEEEEEECCcCHHH
Confidence            998       3556789999999999999999998887543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.69  E-value=2.9e-16  Score=136.77  Aligned_cols=104  Identities=17%  Similarity=0.270  Sum_probs=88.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++....++ ++.+.+.|+...+++++||+|+++.++++
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~  106 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMF  106 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEeccccc
Confidence            3467999999999999999999876 899999999999999999888776 58888888876666678999999988876


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +.     ......+++++.++|||||++++.
T Consensus       107 ~~-----~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       107 LQ-----AGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CC-----HHHHHHHHHHHHHHhCCCcEEEEE
Confidence            62     245667899999999999996664

Part of a tellurite-reducing operon tehA and tehB

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.68  E-value=3.3e-16  Score=142.13  Aligned_cols=110  Identities=23%  Similarity=0.320  Sum_probs=95.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++....++ ++++++++|+.+..  .+++||+|++..+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v  121 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV  121 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence            3467999999999999999999975 899999999999999999988776 47999999997764  3678999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  280 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~  280 (343)
                      ++++       .+...+++++.++|||||++++..++....
T Consensus       122 l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~  155 (255)
T PRK11036        122 LEWV-------ADPKSVLQTLWSVLRPGGALSLMFYNANGL  155 (255)
T ss_pred             HHhh-------CCHHHHHHHHHHHcCCCeEEEEEEECccHH
Confidence            9888       344578899999999999999988777543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.67  E-value=1.4e-15  Score=140.31  Aligned_cols=104  Identities=20%  Similarity=0.351  Sum_probs=91.2

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  243 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i  243 (343)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++...++ ++++.+.|+.....+++||+|++..+++++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMFL  197 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhhC
Confidence            456999999999999999999986 899999999999999999988887 899999999877667899999999988776


Q ss_pred             ccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          244 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       244 ~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .     ......+++++.++|+|||++++..
T Consensus       198 ~-----~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        198 N-----RERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             C-----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2     3466688999999999999977643

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.67  E-value=3.9e-16  Score=133.85  Aligned_cols=106  Identities=27%  Similarity=0.392  Sum_probs=88.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.++||+|||.|+.+..|+++|+ .|+++|+|+.+++.+++.+...++ .++..+.|+.+..+++.||+|++..++.+
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I~st~v~~f  106 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFIVSTVVFMF  106 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEEEEESSGGG
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEEEEEEEecc
Confidence            4578999999999999999999998 899999999999999999888887 59999999999888889999999888877


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +.     +.....+++++.+.++|||++++.+.
T Consensus       107 L~-----~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen  107 LQ-----RELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             S------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CC-----HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            73     35566788999999999999888543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.66  E-value=1.3e-15  Score=132.70  Aligned_cols=150  Identities=15%  Similarity=0.216  Sum_probs=118.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC------CcEEEEeCChHHHHHHHHHHHHcCCC---ceEEEEccCCCCcc-CCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDYSEDAINLAQSLANRDGFS---CIKFLVDDVLDTKL-ERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~------~~v~gvD~s~~~i~~a~~~~~~~~~~---~i~~~~~D~~~~~~-~~~f  231 (343)
                      .++.++||++||||.+++.+.++ +.      .+|+.+|+||.|+..++++....++.   ++.|+++|+.++++ +.+|
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            45689999999999999999886 22      58999999999999999999776662   48999999999987 6899


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH-hhhhccccccccchhhhhcccCC
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS-NLSQRRIGVSQEHEIKDEEACRE  310 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  310 (343)
                      |..+..+.+..+       .++.+.+++++|+|||||++++..++....+.++.+. .|....     .|.+........
T Consensus       179 D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V-----lpvlG~~iagd~  246 (296)
T KOG1540|consen  179 DAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV-----LPVLGEIIAGDR  246 (296)
T ss_pred             eeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh-----hchhhHhhhhhH
Confidence            999988877766       4667889999999999999999998887766665554 333322     444545555555


Q ss_pred             CCeeEecc-cccCCc
Q 019324          311 PPFRYLNH-VRTYPT  324 (343)
Q Consensus       311 ~~f~~~~~-~~~~p~  324 (343)
                      ..|+|+.. ++.||.
T Consensus       247 ~sYqYLveSI~rfp~  261 (296)
T KOG1540|consen  247 KSYQYLVESIRRFPP  261 (296)
T ss_pred             hhhhhHHhhhhcCCC
Confidence            66666654 777775

>PLN02244 tocopherol O-methyltransferase

Probab=99.66  E-value=9.2e-16  Score=144.72  Aligned_cols=107  Identities=22%  Similarity=0.379  Sum_probs=92.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++....++ ++++|+++|+.+.++ +++||+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            45789999999999999999987223899999999999999999888776 479999999998765 6899999999998


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +|+       .+...+++++.++|||||++++.++.
T Consensus       197 ~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        197 EHM-------PDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             hcc-------CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            887       35567899999999999999997653

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.66  E-value=4.9e-16  Score=140.53  Aligned_cols=160  Identities=19%  Similarity=0.341  Sum_probs=113.9

Q ss_pred             HhHHHHHHHHHHhhhhcCCcce-EEeCCchhHHHHHHHhhhhhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEEc
Q 019324           96 SYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWTKSLCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDIG  172 (343)
Q Consensus        96 ~~Wd~~y~~~~~~f~~~~~~~~-~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDiG  172 (343)
                      +-|...|++....+.    .++ .|..+...+. .. .......+.+++.++++.| ++..++..+... .++.+|||+|
T Consensus        54 ~dw~~~w~~~~~p~~----~g~~~~i~p~~~~~-~~-~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiG  127 (250)
T PRK00517         54 EDWEREWKKYFHPIR----IGDRLWIVPSWEDP-PD-PDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVG  127 (250)
T ss_pred             hhHHHHHHHHCCCEE----EcCCEEEECCCcCC-CC-CCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeC
Confidence            348888887665554    332 1211111110 01 2234467778888888888 677777776653 6889999999


Q ss_pred             cCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccccccccCCCChh
Q 019324          173 TGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL  251 (343)
Q Consensus       173 cG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~  251 (343)
                      ||+|.++..+++.|..+|+|+|+|+.+++.|++|+..+++ .++.+..+|       .+||+|+++...+          
T Consensus       128 cGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~~----------  190 (250)
T PRK00517        128 CGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILAN----------  190 (250)
T ss_pred             CcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcHH----------
Confidence            9999999998888776799999999999999999998876 334443332       2799999975432          


Q ss_pred             hHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          252 KRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       252 ~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ....++.++.++|||||+++++.....
T Consensus       191 ~~~~l~~~~~~~LkpgG~lilsgi~~~  217 (250)
T PRK00517        191 PLLELAPDLARLLKPGGRLILSGILEE  217 (250)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence            234678999999999999999866543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.65  E-value=1.9e-15  Score=133.55  Aligned_cols=104  Identities=21%  Similarity=0.173  Sum_probs=84.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH------------cCCCceEEEEccCCCCcc--C
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKL--E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~------------~~~~~i~~~~~D~~~~~~--~  228 (343)
                      .++.+|||+|||.|..+..|+++|+ +|+|+|+|+.+++.+.+....            ....++++.++|+.++..  .
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            3467999999999999999999998 899999999999987432111            011368999999998754  2


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      ..||+|+...++.++.     +..+..+++.+.++|+|||++++
T Consensus       115 ~~fd~v~D~~~~~~l~-----~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        115 ADVDAVYDRAALIALP-----EEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CCeeEEEehHhHhhCC-----HHHHHHHHHHHHHHcCCCCeEEE
Confidence            5899999998887773     46778899999999999997555

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.65  E-value=1.5e-15  Score=129.29  Aligned_cols=113  Identities=27%  Similarity=0.462  Sum_probs=91.9

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      +..+|||+|||+|.++..+++.+.. +|+++|+++.+++.+++++..+++.+++++..|+.+...+++||+|++|.+++.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence            6789999999999999999998654 699999999999999999999998669999999988766789999999988643


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      -.  .++......+++.+.+.|||||.+++......
T Consensus       111 ~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~  144 (170)
T PF05175_consen  111 GG--DDGLDLLRDFIEQARRYLKPGGRLFLVINSHL  144 (170)
T ss_dssp             TS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             cc--ccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence            31  11223567889999999999999987655443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.65  E-value=2.7e-15  Score=128.91  Aligned_cols=115  Identities=18%  Similarity=0.263  Sum_probs=93.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..++..+ ..+|+|+|.|+.|++.++++.+..++++++++++|+.+....++||+|+++. +.
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~  119 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LA  119 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hh
Confidence            347899999999999999988663 3489999999999999999998888878999999998875567999999975 32


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                                ....+++.+.++|+|||.+++........++....+.
T Consensus       120 ----------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~  156 (181)
T TIGR00138       120 ----------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRK  156 (181)
T ss_pred             ----------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHh
Confidence                      2235678889999999999998776666666555443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.64  E-value=4e-15  Score=128.19  Aligned_cols=111  Identities=19%  Similarity=0.236  Sum_probs=92.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.++++.+..++++++++++|+.+....++||+|+++..  
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--  121 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--  121 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence            34789999999999999998864 335899999999999999999999998789999999988766678999999742  


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                               .....+++.++++|||||++++..+.....++..
T Consensus       122 ---------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~  155 (187)
T PRK00107        122 ---------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAE  155 (187)
T ss_pred             ---------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHH
Confidence                     2345678999999999999999877765555443

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.64  E-value=2.2e-16  Score=138.39  Aligned_cols=110  Identities=27%  Similarity=0.429  Sum_probs=92.7

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC------ceEEEEccCCCCccCCCccEEEECc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------CIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~------~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      +.+|||+|||+|.++..|++.|+ +|+|+|.++.||+.|++........      ++++.+.|+...  .+.||.|+|..
T Consensus        90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--ccccceeeeHH
Confidence            57899999999999999999986 9999999999999999985554431      256666676664  34699999999


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                      +++|+       .++..+++.+.++|||||.+++++.+.+......
T Consensus       167 vleHV-------~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~  205 (282)
T KOG1270|consen  167 VLEHV-------KDPQEFLNCLSALLKPNGRLFITTINRTILSFAG  205 (282)
T ss_pred             HHHHH-------hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhc
Confidence            99999       6788899999999999999999999887655443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.64  E-value=5.9e-15  Score=131.83  Aligned_cols=109  Identities=17%  Similarity=0.322  Sum_probs=92.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.++++....+.++++++++|+...++ +++||+|++..+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  123 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG  123 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence            45789999999999999999876 32 4899999999999999999887777789999999988764 578999999888


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++++       .+...+++++.++|+|||.+++......
T Consensus       124 l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~  155 (231)
T TIGR02752       124 LRNV-------PDYMQVLREMYRVVKPGGKVVCLETSQP  155 (231)
T ss_pred             cccC-------CCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence            7766       3455788999999999999998765443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.63  E-value=1.8e-15  Score=137.27  Aligned_cols=100  Identities=19%  Similarity=0.216  Sum_probs=85.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++       +++++++|+.++...++||+|+++.+++
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~  100 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPDTDVVVSNAALQ  100 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCCceEEEEehhhh
Confidence            467899999999999999999872 23899999999999999762       6789999998775567999999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++       .+...++++++++|||||.+++..+.
T Consensus       101 ~~-------~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103        101 WV-------PEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             hC-------CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            88       34567889999999999999987554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.63  E-value=3.6e-15  Score=134.64  Aligned_cols=107  Identities=20%  Similarity=0.268  Sum_probs=89.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      .++.+|||+|||+|..+..+++.   +..+++|+|+|+.|++.|++++...+.. +++++++|+.+.+.. .+|+|+++.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~  133 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF  133 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence            46789999999999999888762   2348999999999999999999877653 799999999887654 599999998


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +++++.     +.+...++++++++|||||.+++...
T Consensus       134 ~l~~l~-----~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        134 TLQFLE-----PSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             HHHhCC-----HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            888772     24456789999999999999999753

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.62  E-value=2.6e-15  Score=140.39  Aligned_cols=105  Identities=22%  Similarity=0.280  Sum_probs=88.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..++..|...|+|+|+|+.++..++......+ ..++.++.+|+.+.+.++.||+|+|.++++
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~  200 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY  200 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence            4578999999999999999999987679999999999976654433322 147999999999887778999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+       .+...++++++++|+|||.+++.+
T Consensus       201 H~-------~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        201 HR-------RSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             cc-------CCHHHHHHHHHHhcCCCcEEEEEE
Confidence            87       355678999999999999999864

>TIGR00452 methyltransferase, putative

Probab=99.61  E-value=5.6e-15  Score=136.90  Aligned_cols=106  Identities=16%  Similarity=0.156  Sum_probs=86.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++++|||||||+|.++..++..|...|+|+|+|+.|+..++......+ ..++.+...++.+.+...+||+|++++++.
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~  199 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY  199 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence            5578999999999999999998887689999999999987544322211 147888889988876666899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |+       .+...++++++++|||||.|++.+.
T Consensus       200 H~-------~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       200 HR-------KSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             cc-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            87       3556788999999999999998654

Known examples to date are restricted to the proteobacteria.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.61  E-value=1.7e-14  Score=127.18  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH-------------HcCCCceEEEEccCCCCcc---
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------------RDGFSCIKFLVDDVLDTKL---  227 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~-------------~~~~~~i~~~~~D~~~~~~---  227 (343)
                      ++.+||..|||.|..+.+|+++|+ .|+|+|+|+.+|+.+.+...             ..+ .++++.++|+.+++.   
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~-~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG-DDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceecc-CceEEEEccCcCCCcccc
Confidence            467999999999999999999998 79999999999999866321             112 379999999999853   


Q ss_pred             -CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          228 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                       .+.||+|+....+.++.     +..+.++.+.+.++|+|||.+++.+..
T Consensus       121 ~~~~fD~VyDra~~~Alp-----p~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALP-----NDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             ccCCcCeeeeehhHhcCC-----HHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence             25899999999998883     467788999999999999999886553

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.61  E-value=3.7e-15  Score=126.53  Aligned_cols=105  Identities=24%  Similarity=0.301  Sum_probs=84.3

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~  244 (343)
                      -.++||+|||+|.++..|+.+ +.+++++|+|+.+++.|++++...  ++|+|.+.|+.+..+++.||+|++..++.++ 
T Consensus        44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL-  119 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLSEVLYYL-  119 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES-GGGS-
T ss_pred             cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEehHhHcC-
Confidence            458999999999999999999 459999999999999999998754  6999999999998888999999999999888 


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                         ....+...++..+...|+|||.+++.+..
T Consensus       120 ---~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  120 ---DDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             ---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             ---CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence               23356778899999999999999997763

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.60  E-value=2.7e-15  Score=116.54  Aligned_cols=95  Identities=31%  Similarity=0.578  Sum_probs=79.2

Q ss_pred             EEEEccCccHHHHHHHhc---CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc-ccc
Q 019324          168 VLDIGTGNGLLLQELSKQ---GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG-TLD  241 (343)
Q Consensus       168 VLDiGcG~G~~~~~la~~---g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~-~l~  241 (343)
                      |||+|||+|..+..+++.   +. .+++|+|+|+.|++.++++....+. ++++++.|+.+++. .++||+|++.+ +++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence            799999999999999986   22 5899999999999999999988775 89999999999764 67999999954 487


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCc
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGG  268 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG  268 (343)
                      ++.     +.+...+++++.++|+|||
T Consensus        80 ~~~-----~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HLS-----PEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GSS-----HHHHHHHHHHHHHTEEEEE
T ss_pred             CCC-----HHHHHHHHHHHHHHhCCCC
Confidence            763     5678899999999999998

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.60  E-value=9.1e-15  Score=132.88  Aligned_cols=102  Identities=22%  Similarity=0.351  Sum_probs=87.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.++++.     +++.++.+|+..+..+++||+|+++.+++
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  104 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQALDLIFANASLQ  104 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCCccEEEEccChh
Confidence            45789999999999999999886 3348999999999999999874     47899999998776667999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++       .+...+++++.++|||||.+++..+.
T Consensus       105 ~~-------~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683        105 WL-------PDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             hC-------CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            87       34567899999999999999997544

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.59  E-value=3.9e-15  Score=126.76  Aligned_cols=113  Identities=19%  Similarity=0.227  Sum_probs=97.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      ....+|.|+|||+|+.+..|+++ +...++|+|-|+.|++.|+++.     ++++|..+|+..+.+..+.|++++|.+++
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~dllfaNAvlq  103 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTDLLFANAVLQ  103 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccchhhhhhhhh
Confidence            56789999999999999999998 5559999999999999998865     69999999999999989999999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      ++.       +...++..+...|.|||.|-+.-+....+.....|+
T Consensus       104 Wlp-------dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr  142 (257)
T COG4106         104 WLP-------DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMR  142 (257)
T ss_pred             hcc-------ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHH
Confidence            993       445678999999999999999877765554444443

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.59  E-value=4.8e-14  Score=121.07  Aligned_cols=122  Identities=16%  Similarity=0.265  Sum_probs=96.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++..++. +++++.+|+.+.. .++||+|+++.++..
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPYLP   94 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCCCC
Confidence            4567899999999999999999876 899999999999999999988876 7899999987753 458999999987754


Q ss_pred             cccCC--------------CChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          243 IGLHP--------------DGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       243 i~~~~--------------~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      ..-..              .+......+++++.++|||||.+++..+... ..+....+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~  154 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLD  154 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHH
Confidence            42100              0112246789999999999999998766555 556666665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.58  E-value=4.1e-14  Score=133.99  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             cccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC---CceEEEEccCCCCcc
Q 019324          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKL  227 (343)
Q Consensus       152 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~---~~i~~~~~D~~~~~~  227 (343)
                      ++++++.+.. ....+|||+|||+|.++..+++.+ ..+|+++|.|+.|++.+++|++.++.   .+++++..|+.....
T Consensus       217 trllL~~lp~-~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~  295 (378)
T PRK15001        217 ARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  295 (378)
T ss_pred             HHHHHHhCCc-ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence            3344443332 224699999999999999999873 34899999999999999999987764   368999999876544


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +.+||+|+||.+++..  +.........+++.+.++|+|||.++++.
T Consensus       296 ~~~fDlIlsNPPfh~~--~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQ--HALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CCCEEEEEECcCcccC--ccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            5689999999988654  22233445688999999999999999985

>TIGR00740 methyltransferase, putative

Probab=99.58  E-value=2.8e-14  Score=128.19  Aligned_cols=109  Identities=17%  Similarity=0.252  Sum_probs=90.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      .++.+|||+|||+|.++..+++.   +..+++|+|+|+.|++.|++++...+. .+++++++|+.+.+++ .+|+|+++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~  130 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF  130 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence            35679999999999999999875   234899999999999999999876553 3799999999987654 589999988


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++++.     +.+...++++++++|||||.+++.....
T Consensus       131 ~l~~~~-----~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       131 TLQFLP-----PEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             chhhCC-----HHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            887762     3456789999999999999999986543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.58  E-value=1.1e-14  Score=132.65  Aligned_cols=110  Identities=24%  Similarity=0.405  Sum_probs=87.3

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      +.++.+|||||||.|.++..++++ |+ +|+|+.+|+...+.+++++...|++ ++++...|..+.+  .+||.|++.+.
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~  136 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEM  136 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEec
Confidence            478999999999999999999999 76 8999999999999999999999884 6999999988754  49999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      ++|+.     ......+++++.++|||||++++.......
T Consensus       137 ~Ehvg-----~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  137 FEHVG-----RKNYPAFFRKISRLLKPGGRLVLQTITHRD  171 (273)
T ss_dssp             GGGTC-----GGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred             hhhcC-----hhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            99983     356678999999999999999986555443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.58  E-value=1.7e-14  Score=130.57  Aligned_cols=102  Identities=21%  Similarity=0.274  Sum_probs=86.8

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~  242 (343)
                      +..+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++..     .+.++++|+...++ +++||+|+++.++++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~  115 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW  115 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence            467899999999999999988864 89999999999999998642     45688999988765 568999999998877


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +       .+...++.++.++|||||.++++++...
T Consensus       116 ~-------~d~~~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258        116 C-------GNLSTALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             c-------CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            6       3556788999999999999999876643

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.58  E-value=1.5e-14  Score=128.59  Aligned_cols=104  Identities=21%  Similarity=0.348  Sum_probs=89.4

Q ss_pred             CeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccccc
Q 019324          166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  243 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i  243 (343)
                      ++|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++ .+++++..|+...+.+++||+|++..+++++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            379999999999999998873 34899999999999999999988776 4789999999776556789999999999887


Q ss_pred             ccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          244 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       244 ~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                             .+...+++++.++|||||++++..+.
T Consensus        81 -------~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       81 -------KDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             -------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence                   34567899999999999999997653

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.57  E-value=2.4e-14  Score=131.21  Aligned_cols=107  Identities=17%  Similarity=0.391  Sum_probs=90.7

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      +.++.+|||+|||+|..+..++.. +. .+|+|+|+++.+++.|+++....+.+++++.++|+.+.++ +++||+|+++.
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            367889999999999988877665 43 3799999999999999999988887789999999988765 56899999998


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++++.       .+...+++++.++|||||++++...
T Consensus       155 v~~~~-------~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        155 VINLS-------PDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             cccCC-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            88765       2445688999999999999999654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.57  E-value=1.9e-14  Score=130.98  Aligned_cols=108  Identities=23%  Similarity=0.389  Sum_probs=89.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|..+..++.....+|+|+|+|+.+++.++++....  .++.+.++|+...++ +++||+|++..++.
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~  128 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKKDFPENTFDMIYSRDAIL  128 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence            677899999999999999988752238999999999999999986542  479999999987665 57899999987776


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      |+.     ..+...+++++.++|||||.++++.+..
T Consensus       129 h~~-----~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        129 HLS-----YADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             hCC-----HHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            652     2366789999999999999999976543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.57  E-value=3.1e-16  Score=121.29  Aligned_cols=95  Identities=32%  Similarity=0.417  Sum_probs=64.3

Q ss_pred             EEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC---CccCCCccEEEECccccccc
Q 019324          169 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD---TKLERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       169 LDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~---~~~~~~fD~V~~~~~l~~i~  244 (343)
                      ||||||+|.++..+++. +..+++|+|+|+.|++.+++++...+..+......+..+   ....++||+|++..+++++ 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence            79999999999999888 334999999999999999998887764444444444333   2234699999999999998 


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEE
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLL  270 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~l  270 (343)
                            .+...+++++.++|||||+|
T Consensus        80 ------~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 ------EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ------S-HHHHHHHHTTT-TSS-EE
T ss_pred             ------hhHHHHHHHHHHHcCCCCCC
Confidence                  56668999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.56  E-value=2.7e-14  Score=124.97  Aligned_cols=125  Identities=16%  Similarity=0.199  Sum_probs=93.8

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC-CCCc--c-CCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LDTK--L-ERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~-~~~~--~-~~~fD~V~~~~  238 (343)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...+.+++.++++|+ ...+  . +++||+|+++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            5679999999999999999876 3348999999999999999999888877899999999 5443  3 57899999865


Q ss_pred             ccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh-HHHHHHHHh
Q 019324          239 TLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHEVSN  288 (343)
Q Consensus       239 ~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~-~~~~~~~~~  288 (343)
                      ...+... +.........+++++.++|||||++++.+.+... ..+.+.++.
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~  171 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSA  171 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            4322110 1111112356889999999999999998765543 345555543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.56  E-value=5.2e-14  Score=121.71  Aligned_cols=115  Identities=19%  Similarity=0.211  Sum_probs=90.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++++...++.+++++.+|+.. ...++||+|++.+...
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~v~~~~~~~  108 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADAIFIGGSGG  108 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCEEEECCCcc
Confidence            567899999999999999998873 24899999999999999999988887789999998753 3456899999876543


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec-CCChHHHHHHHHh
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSN  288 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~-~~~~~~~~~~~~~  288 (343)
                      .          ...+++.+.++|+|||++++... ..+..+..+.+.+
T Consensus       109 ~----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~  146 (187)
T PRK08287        109 N----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEK  146 (187)
T ss_pred             C----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHH
Confidence            2          23567899999999999988653 3334455555543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.56  E-value=1.4e-14  Score=121.58  Aligned_cols=98  Identities=34%  Similarity=0.533  Sum_probs=82.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.|+ +++|+|+++.+++.          .++.....+..... .+++||+|+++.+++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~   89 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE   89 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence            6688999999999999999999887 99999999999998          13344444333332 468999999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      |+       .+...+++++.++|||||++++.+++..
T Consensus        90 ~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   90 HL-------PDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             GS-------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             hc-------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            99       4677899999999999999999988764

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=3.1e-14  Score=128.26  Aligned_cols=111  Identities=23%  Similarity=0.401  Sum_probs=97.8

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      ++.++.+|||||||-|.+++.++++ |. +|+|+++|+++.+.+++++...|++ +++++..|..+..  +.||-|++.+
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvg  145 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVG  145 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehh
Confidence            4488999999999999999999998 44 9999999999999999999999996 8999999988864  4599999999


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      .++|+.     ......+++.+.++|+|||.+++.+.....
T Consensus       146 mfEhvg-----~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         146 MFEHVG-----KENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             hHHHhC-----cccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence            999995     245668999999999999999997665544

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.55  E-value=2.7e-14  Score=140.92  Aligned_cols=107  Identities=22%  Similarity=0.302  Sum_probs=90.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++....+ .++.|.++|+...++ +++||+|++..++.
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~  343 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTIL  343 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence            5678999999999999999988632389999999999999998876443 379999999988765 56899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      |+       .+...++++++++|||||.+++..+..
T Consensus       344 h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        344 HI-------QDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             cc-------CCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            88       355678999999999999999976543

>PRK05785 hypothetical protein; Provisional

Probab=99.55  E-value=1.7e-14  Score=128.33  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=75.5

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~  242 (343)
                      ++.+|||+|||+|.++..+++....+|+|+|+|+.|++.|+++        ..++++|+...++ +++||+|++..++++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~  122 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHA  122 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence            4679999999999999999987323899999999999999863        2357889888875 689999999998877


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPG  267 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~Lkpg  267 (343)
                      +       .+....++++.|+|||.
T Consensus       123 ~-------~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        123 S-------DNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             c-------CCHHHHHHHHHHHhcCc
Confidence            6       45667899999999994

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.55  E-value=3.7e-14  Score=125.59  Aligned_cols=139  Identities=19%  Similarity=0.235  Sum_probs=111.3

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-  227 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-  227 (343)
                      +...++..........+|||+|||+|.+++.++++ ...+++|||+++.+.+.|+++.+.+++ +++++++.|+..+.. 
T Consensus        31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~  110 (248)
T COG4123          31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA  110 (248)
T ss_pred             cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence            34444444445556889999999999999999998 546999999999999999999999887 489999999998753 


Q ss_pred             --CCCccEEEECccccccccC--CC---------ChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          228 --ERQFQLVMDKGTLDAIGLH--PD---------GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       228 --~~~fD~V~~~~~l~~i~~~--~~---------~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                        ..+||+|+||..+......  ++         .....+.+++.+.++|||||.+.++.+.....++...+..|
T Consensus       111 ~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~  185 (248)
T COG4123         111 LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSY  185 (248)
T ss_pred             ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhc
Confidence              3579999999887554322  11         12334678899999999999999999988888888888754

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.55  E-value=1.1e-13  Score=110.95  Aligned_cols=103  Identities=19%  Similarity=0.232  Sum_probs=85.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++...+.++++++..|+....  ...+||+|++...
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence            44679999999999999999987 33589999999999999999998888778999999876522  2468999998654


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..          ....+++.+.++|||||.+++...
T Consensus        98 ~~----------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        98 GG----------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             ch----------hHHHHHHHHHHHcCCCCEEEEEec
Confidence            32          234788999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.54  E-value=1.6e-14  Score=114.92  Aligned_cols=112  Identities=25%  Similarity=0.408  Sum_probs=88.8

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc---cCCCccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK---LERQFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~---~~~~fD~V~~~~~l  240 (343)
                      +.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.++...+. .+++++++|+.+..   ..++||+|+++..+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            358999999999999999999745999999999999999999999887 57999999998865   36899999999887


Q ss_pred             cccc-cCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~-~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      .... ...........+++.+.++|||||.+++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            5321 11111224467899999999999999998764

...

>PRK14967 putative methyltransferase; Provisional

Probab=99.54  E-value=1.3e-13  Score=122.70  Aligned_cols=124  Identities=25%  Similarity=0.275  Sum_probs=94.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++..++. ++.++.+|+.+...+++||+|+++..+..
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  113 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNPPYVP  113 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECCCCCC
Confidence            45689999999999999999988756899999999999999999988876 68899999877544578999999865422


Q ss_pred             cc--------------cCCCChhhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHHHHH
Q 019324          243 IG--------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS  287 (343)
Q Consensus       243 i~--------------~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~~~~  287 (343)
                      -.              ...+.......+++++.++|||||++++..... ...+..+.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~  173 (223)
T PRK14967        114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLS  173 (223)
T ss_pred             CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHH
Confidence            10              011112234568899999999999999865544 4455555554

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.54  E-value=5e-14  Score=124.26  Aligned_cols=138  Identities=25%  Similarity=0.363  Sum_probs=99.9

Q ss_pred             cHHhHHHHHHHHHHhhhhcCCcceEEeCCchhHHHHHHHhhhhhccccCcccCccccccccchhhhhccCCCCeEEEEcc
Q 019324           94 LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGT  173 (343)
Q Consensus        94 ~~~~Wd~~y~~~~~~f~~~~~~~~~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGc  173 (343)
                      ..++|+++|.++...|.....          ...+..|...+                         ...++.+||..||
T Consensus         2 ~~~~W~~~w~~~~~~w~~~~~----------~p~L~~~~~~l-------------------------~~~~~~rvLvPgC   46 (218)
T PF05724_consen    2 DPEFWEERWQEGQTPWDQGEP----------NPALVEYLDSL-------------------------ALKPGGRVLVPGC   46 (218)
T ss_dssp             HHHHHHHHHHTT--TT--TTS----------THHHHHHHHHH-------------------------TTSTSEEEEETTT
T ss_pred             CHHHHHHHHhcCCCCCCCCCC----------CHHHHHHHHhc-------------------------CCCCCCeEEEeCC
Confidence            468999999887766553221          22333333332                         1255679999999


Q ss_pred             CccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH------------cCCCceEEEEccCCCCccC--CCccEEEECcc
Q 019324          174 GNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKLE--RQFQLVMDKGT  239 (343)
Q Consensus       174 G~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~------------~~~~~i~~~~~D~~~~~~~--~~fD~V~~~~~  239 (343)
                      |.|.....|+++|+ +|+|+|+|+.+|+.+.+....            ....+|++.++|+.++...  ++||+|+....
T Consensus        47 G~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~  125 (218)
T PF05724_consen   47 GKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTF  125 (218)
T ss_dssp             TTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSS
T ss_pred             CChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecc
Confidence            99999999999998 899999999999998543221            0113689999999997653  57999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      +.++.     +..+..+.+.+.++|+|||.+++
T Consensus       126 l~Alp-----p~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen  126 LCALP-----PEMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             TTTS------GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred             cccCC-----HHHHHHHHHHHHHHhCCCCcEEE
Confidence            98873     46788899999999999999444

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.53  E-value=1.5e-13  Score=130.37  Aligned_cols=140  Identities=16%  Similarity=0.145  Sum_probs=105.1

Q ss_pred             ccccccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC
Q 019324          147 HVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (343)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~  225 (343)
                      +.+.++.++..++....++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|++|+..++. +++++++|+.+.
T Consensus       234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~  312 (423)
T PRK14966        234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDT  312 (423)
T ss_pred             CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcc
Confidence            345555555555555556779999999999999998875 344899999999999999999988875 899999998764


Q ss_pred             c--cCCCccEEEECccccc------------------cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHH
Q 019324          226 K--LERQFQLVMDKGTLDA------------------IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  285 (343)
Q Consensus       226 ~--~~~~fD~V~~~~~l~~------------------i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~  285 (343)
                      .  ..++||+|++|.+.-.                  +.-..++......+++.+.+.|+|||.+++.......+.+.+.
T Consensus       313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~l  392 (423)
T PRK14966        313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGV  392 (423)
T ss_pred             ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHH
Confidence            3  2457999999875411                  0001223334457788889999999999988777667767666


Q ss_pred             HH
Q 019324          286 VS  287 (343)
Q Consensus       286 ~~  287 (343)
                      +.
T Consensus       393 l~  394 (423)
T PRK14966        393 LA  394 (423)
T ss_pred             HH
Confidence            65

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.52  E-value=1.2e-13  Score=120.91  Aligned_cols=100  Identities=23%  Similarity=0.359  Sum_probs=81.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++.     +++.+.++|+.+...+++||+|+++++++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~~~~~sfD~V~~~~vL~  116 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDPFKDNFFDLVLTKGVLI  116 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCCCCCCCEEEEEECChhh
Confidence            45779999999999999999886 4458999999999999999864     36778899988833468999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+.     +.....+++++.+++  ++.+++..
T Consensus       117 hl~-----p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       117 HIN-----PDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             hCC-----HHHHHHHHHHHHhhc--CcEEEEEE
Confidence            872     356678889999997  45666654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.52  E-value=2.5e-13  Score=124.89  Aligned_cols=139  Identities=17%  Similarity=0.197  Sum_probs=99.4

Q ss_pred             cccccccchhhhhc---cCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccC
Q 019324          148 VEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDV  222 (343)
Q Consensus       148 ~~~~~~~~~~~l~~---~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~  222 (343)
                      .+.++.++...+..   ..++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++|+..+++. +++++++|+
T Consensus       102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~  181 (284)
T TIGR03533       102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL  181 (284)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence            34444444444432   1345799999999999999999873 248999999999999999999988874 799999998


Q ss_pred             CCCccCCCccEEEECccccc------cc---c---------CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          223 LDTKLERQFQLVMDKGTLDA------IG---L---------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       223 ~~~~~~~~fD~V~~~~~l~~------i~---~---------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                      .+...+++||+|+++...-.      +.   .         ..++......+++.+.++|+|||++++...... ..+.+
T Consensus       182 ~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~  260 (284)
T TIGR03533       182 FAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEE  260 (284)
T ss_pred             hhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHH
Confidence            76433458999999864311      00   0         012223346788999999999999999776533 44444


Q ss_pred             HHH
Q 019324          285 EVS  287 (343)
Q Consensus       285 ~~~  287 (343)
                      .+.
T Consensus       261 ~~~  263 (284)
T TIGR03533       261 AYP  263 (284)
T ss_pred             HHH
Confidence            444

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.51  E-value=2.7e-13  Score=124.89  Aligned_cols=140  Identities=16%  Similarity=0.216  Sum_probs=102.9

Q ss_pred             cccccccchhhhhcc--C-CCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccC
Q 019324          148 VEDLKSEPVEENDKY--L-SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDV  222 (343)
Q Consensus       148 ~~~~~~~~~~~l~~~--~-~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~  222 (343)
                      .+.++.++..++...  . +..+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++|+..+++. +++++++|+
T Consensus        95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~  174 (284)
T TIGR00536        95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL  174 (284)
T ss_pred             CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence            344555555544432  2 226899999999999999998732 48999999999999999999988875 499999998


Q ss_pred             CCCccCCCccEEEECcccccc------------------ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          223 LDTKLERQFQLVMDKGTLDAI------------------GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       223 ~~~~~~~~fD~V~~~~~l~~i------------------~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                      .+.....+||+|++|...-..                  .-..++......++..+.++|+|||++++...+.....+.+
T Consensus       175 ~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~  254 (284)
T TIGR00536       175 FEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKE  254 (284)
T ss_pred             hccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHH
Confidence            875334489999998533110                  00112234566788999999999999999888777666655


Q ss_pred             HHH
Q 019324          285 EVS  287 (343)
Q Consensus       285 ~~~  287 (343)
                      .+.
T Consensus       255 ~~~  257 (284)
T TIGR00536       255 LLR  257 (284)
T ss_pred             HHH
Confidence            443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.51  E-value=1.9e-13  Score=115.65  Aligned_cols=108  Identities=19%  Similarity=0.260  Sum_probs=89.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceE-EEEccCCCCc--cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVDDVLDTK--LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~-~~~~D~~~~~--~~~~fD~V~~~~~  239 (343)
                      .....|||+|||||..-...-..+.+.|+++|.++.|-+++.+.+......++. |++++..+++  .++++|+|++..+
T Consensus        75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV  154 (252)
T ss_pred             cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence            334568999999999887776554459999999999999999998877555666 9999999987  4899999999888


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +-.+       .+..+.|+++.|+|+|||++++..-..
T Consensus       155 LCSv-------e~~~k~L~e~~rlLRpgG~iifiEHva  185 (252)
T KOG4300|consen  155 LCSV-------EDPVKQLNEVRRLLRPGGRIIFIEHVA  185 (252)
T ss_pred             Eecc-------CCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            7655       577788999999999999999964433

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.50  E-value=2.1e-13  Score=121.92  Aligned_cols=104  Identities=24%  Similarity=0.374  Sum_probs=88.6

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .+.+|||+|||+|.++..+++.+. .+++++|+++.+++.++++..    +++.++.+|+.+.+. +++||+|+++.+++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~  109 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ  109 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence            357899999999999999998853 379999999999999998764    378899999988764 67899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++       .+...+++++.++|+|||.+++..+...
T Consensus       110 ~~-------~~~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072       110 WC-------DDLSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             hc-------cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            77       3456789999999999999999876554

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.49  E-value=2e-13  Score=120.77  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=83.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++...  .+|+++|+++.+++.|++++...++.+++++++|+..... ..+||+|++...
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~  155 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA  155 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence            6788999999999999999988732  2599999999999999999999988889999999977533 468999998766


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ...+             .+.+.+.|+|||++++...
T Consensus       156 ~~~~-------------~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       156 GPKI-------------PEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             cccc-------------cHHHHHhcCcCcEEEEEEc
Confidence            5443             2567889999999998643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.49  E-value=2.8e-13  Score=118.89  Aligned_cols=100  Identities=17%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+.. +++++.+|+.+... ..+||+|++..
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~  150 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA  150 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence            56789999999999999888875 2 248999999999999999999888864 59999999987533 46899999988


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++.++.             +++.++|+|||++++...
T Consensus       151 ~~~~~~-------------~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        151 AASTIP-------------SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             Ccchhh-------------HHHHHhcCcCcEEEEEEc
Confidence            776552             578899999999988643

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.49  E-value=6.4e-13  Score=115.62  Aligned_cols=124  Identities=17%  Similarity=0.253  Sum_probs=92.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---c-CCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---L-ERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~-~~~fD~V~~~~  238 (343)
                      ...+|||||||+|.++..++.. +...++|+|+++.+++.|+++....++.+++++++|+.+..   . ++++|.|+.+.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            4569999999999999999987 33489999999999999999998888889999999997643   2 45899999875


Q ss_pred             ccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          239 TLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       239 ~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      ...+..- |.........+++++.++|||||.+++.+.+.. ..++.+.+.
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~  146 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLS  146 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            4322100 000011124688999999999999999876664 344444444

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.49  E-value=5.1e-13  Score=120.67  Aligned_cols=124  Identities=25%  Similarity=0.345  Sum_probs=95.0

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .+.+|||+|||+|.++..++.. +...++|+|+++.+++.+++++...++++++++++|+.+....++||+|+++.++..
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence            3569999999999999999987 334899999999999999999998888789999999987544678999999876432


Q ss_pred             cc----c---------------CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          243 IG----L---------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       243 i~----~---------------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      ..    +               ..++......+++++.++|+|||.+++........++.+.+.
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~  230 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE  230 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence            11    0               001112234678999999999999999766555555555554

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.49  E-value=3.5e-13  Score=126.73  Aligned_cols=122  Identities=16%  Similarity=0.194  Sum_probs=95.2

Q ss_pred             cccchhhhhccCCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCC
Q 019324          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ  230 (343)
Q Consensus       152 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~  230 (343)
                      ++.+++.+.. ....+|||+|||+|.++..+++... .+|+++|+|+.|++.++++++.+++ ..+++..|+... ..++
T Consensus       185 t~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~  261 (342)
T PRK09489        185 SQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGR  261 (342)
T ss_pred             HHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCC
Confidence            3445554443 2345899999999999999998743 4899999999999999999999886 567888888664 4678


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ||+|+++.+++...  .........+++++.++|||||.++++.....
T Consensus       262 fDlIvsNPPFH~g~--~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l  307 (342)
T PRK09489        262 FDMIISNPPFHDGI--QTSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (342)
T ss_pred             ccEEEECCCccCCc--cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence            99999999886531  12234567889999999999999998765443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.49  E-value=1.8e-13  Score=123.56  Aligned_cols=106  Identities=24%  Similarity=0.211  Sum_probs=83.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      ..+++|||||||+|..+..++..|++.|+|+|.++...-..+-.....|... +.++..-+.+++..+.||+|+|.+++.
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY  193 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY  193 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence            6789999999999999999999998899999999888777554444444322 333323455554467899999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |.       .+....|.++...|+|||.+++.+.
T Consensus       194 Hr-------r~Pl~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  194 HR-------RSPLDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             cc-------CCHHHHHHHHHHhhCCCCEEEEEEe
Confidence            87       5667788999999999999998643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.49  E-value=2.6e-13  Score=119.63  Aligned_cols=99  Identities=17%  Similarity=0.256  Sum_probs=83.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++. +. .+|+++|+++.+++.+++++...+..+++++++|...... .++||+|++...
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~  154 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA  154 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC
Confidence            67889999999999999988876 32 3899999999999999999998888889999999876543 578999998766


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ...+             .+.+.+.|||||++++..
T Consensus       155 ~~~~-------------~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        155 GPDI-------------PKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             cccc-------------hHHHHHhhCCCcEEEEEE
Confidence            5433             246777899999999864

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.49  E-value=2.4e-13  Score=127.03  Aligned_cols=104  Identities=15%  Similarity=0.153  Sum_probs=86.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++. +..+|+++|+|+.|++.++++...   .+++++.+|+.+.++ +++||+|+++.++
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L  188 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence            35679999999999999988875 335899999999999999987642   378899999988765 5789999999988


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++       .+....++++.++|||||.+++....
T Consensus       189 ~~~-------~d~~~~L~e~~rvLkPGG~LvIi~~~  217 (340)
T PLN02490        189 EYW-------PDPQRGIKEAYRVLKIGGKACLIGPV  217 (340)
T ss_pred             hhC-------CCHHHHHHHHHHhcCCCcEEEEEEec
Confidence            876       24456889999999999999886543

>PRK08317 hypothetical protein; Provisional

Probab=99.48  E-value=8.2e-13  Score=118.00  Aligned_cols=106  Identities=24%  Similarity=0.362  Sum_probs=88.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++..  ..+++|+|+|+.+++.++++....+ .++.+...|+...+. ++.||+|++..+
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~   96 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-PNVEFVRGDADGLPFPDGSFDAVRSDRV   96 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-CceEEEecccccCCCCCCCceEEEEech
Confidence            567899999999999999998862  3489999999999999998843333 479999999887654 578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++++       .+...+++++.++|||||.+++..+.
T Consensus        97 ~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         97 LQHL-------EDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             hhcc-------CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            8887       35567889999999999999987654

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1e-12  Score=118.87  Aligned_cols=121  Identities=21%  Similarity=0.221  Sum_probs=95.3

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER  229 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~  229 (343)
                      -.+++++-+.... ..+|||+|||.|.++..+++.. ..+++.+|.|..+++.+++|+..+++++..++..|+.+...+ 
T Consensus       146 GS~lLl~~l~~~~-~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-  223 (300)
T COG2813         146 GSRLLLETLPPDL-GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-  223 (300)
T ss_pred             HHHHHHHhCCccC-CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-
Confidence            4555555555433 3499999999999999999984 459999999999999999999999987766777777765444 


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +||+|+||..++.=  +.....-...++....+.|++||.|.++..
T Consensus       224 kfd~IisNPPfh~G--~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         224 KFDLIISNPPFHAG--KAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cccEEEeCCCccCC--cchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            99999999998643  112222334789999999999999998755

>PRK14968 putative methyltransferase; Provisional

Probab=99.48  E-value=1.3e-12  Score=112.60  Aligned_cols=124  Identities=21%  Similarity=0.346  Sum_probs=94.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc--eEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~--i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.+++++..++..+  +.++++|+.+...+..||+|+++..+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~  100 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY  100 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence            456799999999999999999985 489999999999999999998877644  89999998775455689999998765


Q ss_pred             ccc--------------ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          241 DAI--------------GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       241 ~~i--------------~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      ...              ............+++++.++|||||.+++..+... ...+.+.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~  162 (188)
T PRK14968        101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLE  162 (188)
T ss_pred             CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHH
Confidence            321              00112233456789999999999999988765443 344444444

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=8.3e-13  Score=122.66  Aligned_cols=139  Identities=17%  Similarity=0.208  Sum_probs=98.6

Q ss_pred             ccccccccchhhhhcc--C-CCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEcc
Q 019324          147 HVEDLKSEPVEENDKY--L-SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD  221 (343)
Q Consensus       147 ~~~~~~~~~~~~l~~~--~-~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D  221 (343)
                      +.+.+..++...+...  . +..+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++|+..+++. +++++++|
T Consensus       113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D  192 (307)
T PRK11805        113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD  192 (307)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            3444555555544322  1 23689999999999999998873 348999999999999999999988874 69999999


Q ss_pred             CCCCccCCCccEEEECccccc------c----c--------cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324          222 VLDTKLERQFQLVMDKGTLDA------I----G--------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  283 (343)
Q Consensus       222 ~~~~~~~~~fD~V~~~~~l~~------i----~--------~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~  283 (343)
                      +.+...+++||+|+++.+.-.      +    .        -..++......+++.+.++|+|||.+++..... ...+.
T Consensus       193 ~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~  271 (307)
T PRK11805        193 LFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLE  271 (307)
T ss_pred             hhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHH
Confidence            876434568999999854311      0    0        011222344678899999999999999976554 33344


Q ss_pred             HHH
Q 019324          284 HEV  286 (343)
Q Consensus       284 ~~~  286 (343)
                      ..+
T Consensus       272 ~~~  274 (307)
T PRK11805        272 EAY  274 (307)
T ss_pred             HHH
Confidence            333

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.47  E-value=4.4e-13  Score=118.88  Aligned_cols=103  Identities=26%  Similarity=0.343  Sum_probs=85.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++....+. .++.+.++|+...+  ++||+|++..++.
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~  130 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLI  130 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHH
Confidence            4578999999999999999998865 899999999999999999877665 37999999998765  7899999988876


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ++.     ......+++++.+++++++++.+.
T Consensus       131 ~~~-----~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       131 HYP-----ASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             hCC-----HHHHHHHHHHHHHHhCCCEEEEEC
Confidence            652     245667889999998877655543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK06922 hypothetical protein; Provisional

Probab=99.47  E-value=4.1e-13  Score=132.99  Aligned_cols=112  Identities=16%  Similarity=0.291  Sum_probs=90.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--c-CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~-~~~fD~V~~~~  238 (343)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++....+. ++.++++|+.+.+  + +++||+|+++.
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVsn~  495 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVYSS  495 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEEch
Confidence            46789999999999999888875 334999999999999999998766553 7889999988765  2 57899999998


Q ss_pred             cccccccC-C-----CChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLH-P-----DGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~-~-----~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +++++.-. +     ........++++++++|||||.+++...
T Consensus       496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            88765211 1     1235677899999999999999999754

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=7.7e-13  Score=121.16  Aligned_cols=140  Identities=22%  Similarity=0.309  Sum_probs=103.6

Q ss_pred             ccccccccchhhhhccCCCC-eEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC
Q 019324          147 HVEDLKSEPVEENDKYLSSW-SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD  224 (343)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~-~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~  224 (343)
                      +.+.+..++..++....... +|||+|||+|.+++.++.... .+|+|+|+|+.+++.|++|+..+++.++.++++|+..
T Consensus        92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~  171 (280)
T COG2890          92 PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE  171 (280)
T ss_pred             cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc
Confidence            34445555554432222222 799999999999999999853 3999999999999999999999997677777777766


Q ss_pred             CccCCCccEEEECccccc------------------cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324          225 TKLERQFQLVMDKGTLDA------------------IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       225 ~~~~~~fD~V~~~~~l~~------------------i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~  286 (343)
                      . ..++||+|++|..+=-                  +.-..++..-...++.++.+.|+|||.+++.....+...+.+.+
T Consensus       172 ~-~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~  250 (280)
T COG2890         172 P-LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF  250 (280)
T ss_pred             c-cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH
Confidence            4 3459999999975311                  11122344556688899999999999999987777777776666


Q ss_pred             H
Q 019324          287 S  287 (343)
Q Consensus       287 ~  287 (343)
                      .
T Consensus       251 ~  251 (280)
T COG2890         251 E  251 (280)
T ss_pred             H
Confidence            5

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.46  E-value=6e-13  Score=127.23  Aligned_cols=104  Identities=28%  Similarity=0.493  Sum_probs=87.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.++++..  +. ++++...|....  +++||+|++..+++
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~e  239 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFE  239 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchh
Confidence            57789999999999999999986 54 89999999999999999874  33 588888888764  57899999999988


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++.     ......+++++.++|||||++++.....
T Consensus       240 hvg-----~~~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        240 HVG-----PKNYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             hCC-----hHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            873     2345678999999999999999976543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.46  E-value=3.1e-12  Score=125.06  Aligned_cols=129  Identities=20%  Similarity=0.259  Sum_probs=100.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.+++++...|+.+++++++|+.....+++||+|++....
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pc  328 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPC  328 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCC
Confidence            56789999999999999888874  2248999999999999999999999987899999999887656789999975432


Q ss_pred             ccc---ccCCC-----Chh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324          241 DAI---GLHPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ  291 (343)
Q Consensus       241 ~~i---~~~~~-----~~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~  291 (343)
                      ...   ..+|+     .+.       ....++.++.++|||||++++++|....++....+..|..
T Consensus       329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~  394 (445)
T PRK14904        329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ  394 (445)
T ss_pred             CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence            211   11221     111       1236899999999999999999999987776666655543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.45  E-value=8.5e-13  Score=130.47  Aligned_cols=124  Identities=16%  Similarity=0.256  Sum_probs=94.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      ++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|+..+++ .+++++++|+.+....++||+|++|..+-
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence            3468999999999999998875 335899999999999999999988886 36999999987643356899999986432


Q ss_pred             cc-------------------ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          242 AI-------------------GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       242 ~i-------------------~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      ..                   .-..++......+++.+.++|+|||.+++.........+.+.+.
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~  282 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFL  282 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHH
Confidence            11                   00112223445678899999999999999766666666666555

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.45  E-value=1.4e-12  Score=126.64  Aligned_cols=131  Identities=21%  Similarity=0.320  Sum_probs=104.2

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEE
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMD  236 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~  236 (343)
                      ...++.+|||+|||+|..+..+++.  +..+|+++|+|+.+++.+++++...|+.++++.+.|+....  ..++||.|++
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            3467889999999999999998876  23489999999999999999999999878999999998764  3578999998


Q ss_pred             Ccccccccc---CCCC-----h-------hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324          237 KGTLDAIGL---HPDG-----P-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ  291 (343)
Q Consensus       237 ~~~l~~i~~---~~~~-----~-------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~  291 (343)
                      .........   +|+.     .       .....++.++.+.|||||++++++|....++....+..|..
T Consensus       314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~  383 (431)
T PRK14903        314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY  383 (431)
T ss_pred             CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence            765543322   2211     0       12246789999999999999999999988887777776643

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.45  E-value=3.9e-13  Score=122.37  Aligned_cols=106  Identities=15%  Similarity=0.211  Sum_probs=83.3

Q ss_pred             CCCeEEEEccCccH----HHHHHHhcC------CCcEEEEeCChHHHHHHHHHHH----HcC------------------
Q 019324          164 SSWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQSLAN----RDG------------------  211 (343)
Q Consensus       164 ~~~~VLDiGcG~G~----~~~~la~~g------~~~v~gvD~s~~~i~~a~~~~~----~~~------------------  211 (343)
                      ++.+|||+|||+|.    +++.+++.+      ..+|+|+|+|+.|++.|++..-    ..+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    455555542      1379999999999999998531    000                  


Q ss_pred             ----C-CceEEEEccCCCCcc-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          212 ----F-SCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       212 ----~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                          + .+|.|.+.|+.+.++ .++||+|+|.+++.++.     ......+++++.++|+|||++++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-----~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-----EPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-----HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                1 268999999998765 68999999999998772     3456689999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.44  E-value=1.3e-12  Score=113.79  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=82.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-c-cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~-~~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++++...+..+++++.+|+.+. . ....+|.++..+.
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~  118 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGG  118 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECC
Confidence            56789999999999999999865 2348999999999999999999988877899999998652 1 2234566654211


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                                 .....+++++.++|+|||.+++..++.
T Consensus       119 -----------~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        119 -----------RPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             -----------cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence                       233567899999999999999987654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.44  E-value=4.6e-12  Score=117.65  Aligned_cols=100  Identities=20%  Similarity=0.146  Sum_probs=77.2

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-----CCceEEEEccCCCCccCCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-----~~~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++....+     ..++.|.+.|+...  +++||+|+|..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcC
Confidence            567999999999999999999875 89999999999999999987642     23688999998653  57899999998


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      ++.|+.     ......+++.+.+ +.+||+++.
T Consensus       221 vL~H~p-----~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        221 VLIHYP-----QDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             EEEecC-----HHHHHHHHHHHHh-hcCCEEEEE
Confidence            887652     1233345666665 456665443

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.44  E-value=1.9e-12  Score=109.21  Aligned_cols=129  Identities=17%  Similarity=0.246  Sum_probs=99.7

Q ss_pred             ccccccccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC
Q 019324          147 HVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (343)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~  225 (343)
                      +...++...+..|.. .++.+++|||||+|.++..++..+ ..+|+++|-++.+++..++|++..+++|+.++.+|+.+.
T Consensus        18 TK~EIRal~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~   96 (187)
T COG2242          18 TKEEIRALTLSKLRP-RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA   96 (187)
T ss_pred             cHHHHHHHHHHhhCC-CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence            333444444444433 788999999999999999999554 349999999999999999999999999999999999886


Q ss_pred             ccCC-CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          226 KLER-QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       226 ~~~~-~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      ..+. ++|.|+..+. ..+          ..+++.+...|||||++++....-. .....+.++
T Consensus        97 L~~~~~~daiFIGGg-~~i----------~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~  149 (187)
T COG2242          97 LPDLPSPDAIFIGGG-GNI----------EEILEAAWERLKPGGRLVANAITLETLAKALEALE  149 (187)
T ss_pred             hcCCCCCCEEEECCC-CCH----------HHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence            4332 7999998876 333          4678999999999999999655443 333444444

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.44  E-value=2.1e-12  Score=116.65  Aligned_cols=121  Identities=17%  Similarity=0.194  Sum_probs=91.8

Q ss_pred             CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~~~l  240 (343)
                      +.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|+..++   ++++++|+.+...   .++||+|++|..+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy  163 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPY  163 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence            458999999999999999876 22489999999999999999998765   4789999876422   3579999999764


Q ss_pred             cccc----c---------------CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          241 DAIG----L---------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       241 ~~i~----~---------------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                      ....    +               ..++......++..+.++|+|||++++.........+...+.+
T Consensus       164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~  230 (251)
T TIGR03704       164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFAR  230 (251)
T ss_pred             CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHH
Confidence            2110    0               1122223457888889999999999998877777776666653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.44  E-value=1.5e-12  Score=115.69  Aligned_cols=109  Identities=30%  Similarity=0.503  Sum_probs=92.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++...+..++.+...|+.+...  +++||+|++..++
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            3477999999999999999988865 799999999999999999887765468999999877653  3789999999988


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      +++       .+...+++++.++|+|||.+++..++...
T Consensus       123 ~~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~~~~  154 (224)
T TIGR01983       123 EHV-------PDPQAFIRACAQLLKPGGILFFSTINRTP  154 (224)
T ss_pred             HhC-------CCHHHHHHHHHHhcCCCcEEEEEecCCCc
Confidence            877       35567889999999999999998776653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.44  E-value=1.8e-12  Score=115.96  Aligned_cols=108  Identities=22%  Similarity=0.313  Sum_probs=89.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      .++.+|||+|||+|.++..++..+  ..+++++|+++.+++.+++++...+. .++.+..+|+.+... .+.||+|++..
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~  129 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF  129 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence            356799999999999999998875  35999999999999999998876443 368999999988764 47899999988


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++++       .+...+++++.++|+|||.+++.....
T Consensus       130 ~l~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~  161 (239)
T PRK00216        130 GLRNV-------PDIDKALREMYRVLKPGGRLVILEFSK  161 (239)
T ss_pred             ccccC-------CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence            87766       345678899999999999998865443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.43  E-value=6.4e-12  Score=122.45  Aligned_cols=129  Identities=23%  Similarity=0.333  Sum_probs=101.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~V~  235 (343)
                      .++.+|||+|||+|..+..+++. + ...|+++|+++.+++.+++++...|+.++.++++|+....     ..++||.|+
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  330 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL  330 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence            56789999999999999999886 2 2489999999999999999999999888999999998764     146899999


Q ss_pred             ECccccc---cccCCCC-----hhh-------HHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324          236 DKGTLDA---IGLHPDG-----PLK-------RIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ  291 (343)
Q Consensus       236 ~~~~l~~---i~~~~~~-----~~~-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~  291 (343)
                      +......   +..+++.     +.+       ...++.++.++|||||+++.++|....++....+..|..
T Consensus       331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~  401 (434)
T PRK14901        331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLA  401 (434)
T ss_pred             EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH
Confidence            8654322   2112221     111       357889999999999999999999988877777765543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.43  E-value=3.4e-12  Score=116.31  Aligned_cols=128  Identities=19%  Similarity=0.175  Sum_probs=98.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|..+..+++. + ...|+++|+++.+++.++++++..++.++.+++.|...... .+.||.|+++..
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P  149 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP  149 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence            56789999999999999998875 2 23799999999999999999999998889999999876542 457999998754


Q ss_pred             ccccc---cCCCC-----hh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhh
Q 019324          240 LDAIG---LHPDG-----PL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  290 (343)
Q Consensus       240 l~~i~---~~~~~-----~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~  290 (343)
                      .....   .+|+.     ..       ....+|+++.++|||||+++.++|.....+....+..|-
T Consensus       150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l  215 (264)
T TIGR00446       150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLL  215 (264)
T ss_pred             CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHH
Confidence            43221   11111     11       224588999999999999999999888776555555443

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.5e-12  Score=112.19  Aligned_cols=99  Identities=19%  Similarity=0.258  Sum_probs=89.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|..+..|++.. .+|+.+|..+...+.|++|+...|..|+.+.++|...-.. ..+||.|+..+...
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~  149 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAP  149 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccC
Confidence            778999999999999999999984 3899999999999999999999999899999999988654 58999999988887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+.             +.+.+.||+||++++-..
T Consensus       150 ~vP-------------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         150 EVP-------------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCC-------------HHHHHhcccCCEEEEEEc
Confidence            774             678889999999999765

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.42  E-value=4.1e-12  Score=116.40  Aligned_cols=125  Identities=22%  Similarity=0.284  Sum_probs=92.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..++... ..+++|+|+|+.+++.+++++......++.++.+|+.+....++||+|+++..+.
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~  186 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI  186 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence            467899999999999999999873 3489999999999999999987333357999999987654457899999986542


Q ss_pred             ccc-------------------cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          242 AIG-------------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       242 ~i~-------------------~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      ...                   -+.++......+++++.++|+|||++++.........+.+.+.
T Consensus       187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~  251 (275)
T PRK09328        187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLA  251 (275)
T ss_pred             CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHH
Confidence            110                   0112223446788899999999999999765544444444443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.42  E-value=3.2e-12  Score=120.19  Aligned_cols=117  Identities=15%  Similarity=0.087  Sum_probs=94.6

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      ...++.+|||+|||+|.++..++..+. .++|+|+++.|+..+++|+...+++++.+.++|+.+.+. +++||+|+++.+
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            346788999999999999998887765 899999999999999999999888778999999998765 578999999876


Q ss_pred             cccccc-CCCCh-hhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          240 LDAIGL-HPDGP-LKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       240 l~~i~~-~~~~~-~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +..-.. ..... .....+++++.++|||||++++..+...
T Consensus       258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~  298 (329)
T TIGR01177       258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI  298 (329)
T ss_pred             CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence            543211 11111 2346789999999999999999877653

This family is found exclusively in the Archaea.

>PRK04266 fibrillarin; Provisional

Probab=99.41  E-value=4.9e-12  Score=112.29  Aligned_cols=100  Identities=14%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC----ccCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~----~~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++. +...|+|+|+++.|++.+.+++...  +|+.++.+|+...    ...++||+|++.
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~~d  148 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIYQD  148 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEEEC
Confidence            67889999999999999999987 3248999999999999888776543  4899999998753    224679999864


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ..         .+.....+++++.++|||||.++++
T Consensus       149 ~~---------~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        149 VA---------QPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CC---------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            21         1223345679999999999999995

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.41  E-value=2.7e-12  Score=113.29  Aligned_cols=99  Identities=18%  Similarity=0.147  Sum_probs=83.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++.++++..+|..+... .++||+|++...+.
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~  155 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP  155 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence            567899999999999999888774 4899999999999999999998888789999999866433 47899999977654


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+             .+.+.+.|+|||++++...
T Consensus       156 ~~-------------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        156 EI-------------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             hh-------------hHHHHHhcCCCcEEEEEEc
Confidence            43             2567899999999998765

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.41  E-value=2e-12  Score=118.42  Aligned_cols=96  Identities=21%  Similarity=0.334  Sum_probs=77.7

Q ss_pred             CCCeEEEEccCccHHHHHHHhcC----CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g----~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      +..+|||+|||+|.++..+++..    ...++|+|+|+.|++.|+++.     +++.+.++|+.+.++ +++||+|++..
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~  159 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIY  159 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEec
Confidence            45689999999999999988652    126999999999999998753     478999999988775 57899999753


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      .-              ..++++.|+|||||++++..++..
T Consensus       160 ~~--------------~~~~e~~rvLkpgG~li~~~p~~~  185 (272)
T PRK11088        160 AP--------------CKAEELARVVKPGGIVITVTPGPR  185 (272)
T ss_pred             CC--------------CCHHHHHhhccCCCEEEEEeCCCc
Confidence            21              124789999999999999877654

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.41  E-value=3.2e-12  Score=114.31  Aligned_cols=108  Identities=30%  Similarity=0.466  Sum_probs=90.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.+. +++++|+++.+++.++++....+. ++.+...|+.+..  ..+.||+|++..++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            4578999999999999999998865 799999999999999998877665 6888888887764  35789999999888


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      +++       .+...+++.+.++|+|||.+++..++...
T Consensus       125 ~~~-------~~~~~~l~~~~~~L~~gG~l~v~~~~~~~  156 (233)
T PRK05134        125 EHV-------PDPASFVRACAKLVKPGGLVFFSTLNRNL  156 (233)
T ss_pred             hcc-------CCHHHHHHHHHHHcCCCcEEEEEecCCCh
Confidence            776       24456789999999999999998776543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=7.9e-12  Score=121.58  Aligned_cols=128  Identities=19%  Similarity=0.264  Sum_probs=98.4

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEEC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDK  237 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~  237 (343)
                      ..++.+|||+|||+|..+..+++.+. ..|+|+|+++.+++.+++++...|+ ++.++++|+.+...   .++||.|+++
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D  320 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRILLD  320 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEEEEC
Confidence            36788999999999999999998743 4899999999999999999999887 57899999987532   4679999987


Q ss_pred             cccccc---ccCCC-----Chh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhh
Q 019324          238 GTLDAI---GLHPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  290 (343)
Q Consensus       238 ~~l~~i---~~~~~-----~~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~  290 (343)
                      ......   .-+++     ...       ....++..+.++|||||++++++|.....+....+..|.
T Consensus       321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l  388 (427)
T PRK10901        321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFL  388 (427)
T ss_pred             CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHH
Confidence            654321   11111     111       124688999999999999999999777666655555444

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.41  E-value=3.4e-12  Score=111.43  Aligned_cols=103  Identities=25%  Similarity=0.320  Sum_probs=84.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++++..+++ .++.++.+|+.+..  ..+.||.|++.
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~  118 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG  118 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence            57889999999999999998764 3 34899999999999999999998884 68999999987642  24689999985


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ...          .....+++.+.++|||||++++..+
T Consensus       119 ~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        119 GGS----------EKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             CCc----------ccHHHHHHHHHHHcCCCcEEEEEee
Confidence            432          2344678999999999999998554

>PLN03075 nicotianamine synthase; Provisional

Probab=99.40  E-value=4.2e-12  Score=115.80  Aligned_cols=107  Identities=21%  Similarity=0.318  Sum_probs=83.5

Q ss_pred             CCCeEEEEccCccHHHHHH-H-hc-CCCcEEEEeCChHHHHHHHHHHHH-cCC-CceEEEEccCCCCcc-CCCccEEEEC
Q 019324          164 SSWSVLDIGTGNGLLLQEL-S-KQ-GFSDLTGVDYSEDAINLAQSLANR-DGF-SCIKFLVDDVLDTKL-ERQFQLVMDK  237 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~l-a-~~-g~~~v~gvD~s~~~i~~a~~~~~~-~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~  237 (343)
                      ++++|+|||||.|.++..+ + .. ...+++|+|+++.+++.|++.+.. .++ ++++|.++|+.+... .+.||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            6889999999988554433 3 23 234799999999999999999964 565 469999999988643 4789999998


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                       ++.++    + ..+...+++++.+.|+|||.+++-+..
T Consensus       203 -ALi~~----d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~  235 (296)
T PLN03075        203 -ALVGM----D-KEEKVKVIEHLGKHMAPGALLMLRSAH  235 (296)
T ss_pred             -ccccc----c-cccHHHHHHHHHHhcCCCcEEEEeccc
Confidence             54433    1 245567899999999999999997743

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.40  E-value=4.3e-12  Score=112.29  Aligned_cols=106  Identities=25%  Similarity=0.348  Sum_probs=88.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.+.  .+++++|+++.+++.++++..  ...++.+..+|+.+.+. .++||+|++..+
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~  115 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFG  115 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence            3578999999999999999988754  389999999999999998875  22478999999988764 468999999887


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++++       .+...+++++.++|+|||++++.....
T Consensus       116 ~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~  146 (223)
T TIGR01934       116 LRNV-------TDIQKALREMYRVLKPGGRLVILEFSK  146 (223)
T ss_pred             eCCc-------ccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            7665       355678999999999999999866543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.39  E-value=5.8e-12  Score=123.22  Aligned_cols=128  Identities=20%  Similarity=0.303  Sum_probs=98.4

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEEC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDK  237 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~  237 (343)
                      ..++.+|||+|||+|..+..+++.  +...|+|+|+++.+++.+++|+...|+.+++++++|+.+..  +.++||+|+++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence            356789999999999999999886  23489999999999999999999999878999999998753  24789999987


Q ss_pred             ccccccc---cCCCC-----hhh-------HHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          238 GTLDAIG---LHPDG-----PLK-------RIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       238 ~~l~~i~---~~~~~-----~~~-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                      .......   .+|+.     ..+       ...+++.+.++|||||.++.++|....++....+..|
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~  394 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAF  394 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHH
Confidence            6533221   11211     111       2357899999999999999998888766655544443

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.37  E-value=7.3e-12  Score=116.68  Aligned_cols=106  Identities=18%  Similarity=0.170  Sum_probs=87.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++++...++ ++++++.+|+.+..++ .+|+|++..++
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~l  225 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRIL  225 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhh
Confidence            567899999999999999999883 248999998 7899999999988887 4799999999875554 47999887776


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++.     .......+++++++.|+|||++++...
T Consensus       226 h~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       226 YSA-----NEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             hcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            544     234556789999999999999999755

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.36  E-value=9.3e-12  Score=95.10  Aligned_cols=101  Identities=28%  Similarity=0.416  Sum_probs=84.3

Q ss_pred             eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECccccccc
Q 019324          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~  244 (343)
                      +|||+|||+|.++..+++.+..+++++|+++.++..+++........+++++..|+.+...  .++||+|+++.+++++ 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence            5899999999999999885445999999999999999865444444579999999988763  5789999999988763 


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                           ......+++.+.+.|+|||.+++.
T Consensus        80 -----~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -----VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence                 256678889999999999999886

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.35  E-value=8.1e-12  Score=106.04  Aligned_cols=102  Identities=21%  Similarity=0.251  Sum_probs=83.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||.|.++..|.+.-....+|+|+++..+..|.++       .+.++++|+.+.-   ++++||.|+++.+
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt   84 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQT   84 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence            66899999999999999999886334899999999999888873       6789999998753   3789999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      ++++       ..+..+|+++.|+   |...+++.+|.-...
T Consensus        85 LQ~~-------~~P~~vL~EmlRV---gr~~IVsFPNFg~W~  116 (193)
T PF07021_consen   85 LQAV-------RRPDEVLEEMLRV---GRRAIVSFPNFGHWR  116 (193)
T ss_pred             HHhH-------hHHHHHHHHHHHh---cCeEEEEecChHHHH
Confidence            9998       5666777777655   668888888775443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.35  E-value=7.8e-12  Score=119.77  Aligned_cols=125  Identities=19%  Similarity=0.238  Sum_probs=94.5

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc-----cCCCccE
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-----LERQFQL  233 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~-----~~~~fD~  233 (343)
                      ...++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++|+..+++.  +++++++|+.+..     ..++||+
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            34568899999999999998877777669999999999999999999999874  7999999998752     1358999


Q ss_pred             EEECccccccccCCCC----hhhHHHHHHHHhhccCCCcEEEEEecCCC--hHHHHHHHH
Q 019324          234 VMDKGTLDAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNST--KDELVHEVS  287 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~----~~~~~~~l~~~~~~LkpgG~lii~~~~~~--~~~~~~~~~  287 (343)
                      |+++...-.-  ....    ......++..+.++|+|||++++.+|+..  .+.+.+.+.
T Consensus       297 VilDPP~f~~--~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~  354 (396)
T PRK15128        297 IVMDPPKFVE--NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIA  354 (396)
T ss_pred             EEECCCCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence            9998764211  0000    01234556678999999999999888754  344444443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.35  E-value=6.5e-12  Score=117.32  Aligned_cols=111  Identities=26%  Similarity=0.358  Sum_probs=85.6

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-------C---CceEEEEccCCCCc-----cC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-------F---SCIKFLVDDVLDTK-----LE  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-------~---~~i~~~~~D~~~~~-----~~  228 (343)
                      ++.+|||+|||-|..+......+...++|+|+|..+|+.|+++.....       .   -...|+.+|.....     .+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            688999999999998888888877899999999999999999983211       0   14678888887543     12


Q ss_pred             --CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          229 --RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       229 --~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                        ..||+|-|...+|+..   ........+|+++.+.|+|||+++.+++..
T Consensus       142 ~~~~FDvVScQFalHY~F---ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~  189 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAF---ESEEKARQFLKNVSSLLKPGGYFIGTTPDS  189 (331)
T ss_dssp             TTS-EEEEEEES-GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             cCCCcceeehHHHHHHhc---CCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence              5999999999998874   555677789999999999999999998855

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.35  E-value=2.5e-12  Score=112.56  Aligned_cols=102  Identities=23%  Similarity=0.295  Sum_probs=81.8

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCC-cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      +.++.+|||||||+|..+..|+.. |.. .|+++|..+..++.|++++...+..|+.+.++|...... ..+||.|++..
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~  149 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA  149 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence            478999999999999999999887 432 699999999999999999999998899999999876543 57899999988


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ....+.             ..+.+.|++||++++....
T Consensus       150 a~~~ip-------------~~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  150 AVPEIP-------------EALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             BBSS---------------HHHHHTEEEEEEEEEEESS
T ss_pred             ccchHH-------------HHHHHhcCCCcEEEEEEcc
Confidence            776552             6688889999999996543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.35  E-value=7e-12  Score=128.77  Aligned_cols=126  Identities=17%  Similarity=0.138  Sum_probs=96.9

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc--cCCCccEEEEC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--LERQFQLVMDK  237 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~--~~~~fD~V~~~  237 (343)
                      ..++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++|+..+++.  +++++++|+.++.  ..++||+|+++
T Consensus       536 ~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        536 MAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             hcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            3467899999999999999999988768999999999999999999999884  7999999987642  25689999998


Q ss_pred             ccccccccC----CCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          238 GTLDAIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       238 ~~l~~i~~~----~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      ...-.-.-.    .........++..+.++|+|||+++++++........+.+.
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~  669 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLA  669 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHH
Confidence            653211000    01123445678889999999999999877766554444443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.35  E-value=1e-11  Score=110.64  Aligned_cols=99  Identities=23%  Similarity=0.276  Sum_probs=79.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+. .|+|+|+|+.+++.|+++....+. .++.+..+|+..  .+++||+|++..+++
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~  138 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLI  138 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhh
Confidence            4577999999999999999998875 799999999999999999887765 479999999543  357899999998886


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGL  269 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~  269 (343)
                      ++.     ......+++.+.+.++++++
T Consensus       139 ~~~-----~~~~~~~l~~l~~~~~~~~~  161 (230)
T PRK07580        139 HYP-----QEDAARMLAHLASLTRGSLI  161 (230)
T ss_pred             cCC-----HHHHHHHHHHHHhhcCCeEE
Confidence            652     24556777888887654443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.34  E-value=1.2e-11  Score=108.83  Aligned_cols=113  Identities=24%  Similarity=0.300  Sum_probs=81.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~~f  231 (343)
                      .++.+|||||||+|.++..+++. +. ..|+|+|+++.           .+.+++.++++|+.+..         .+++|
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~  118 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV  118 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence            56789999999999999999887 22 48999999981           12357899999999853         25789


Q ss_pred             cEEEECccccccccCCC-Ch----hhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHHHHH
Q 019324          232 QLVMDKGTLDAIGLHPD-GP----LKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS  287 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~-~~----~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~~~~  287 (343)
                      |+|+++...+... .+. ..    .....+++++.++|||||.+++..+.. ...++...+.
T Consensus       119 D~V~S~~~~~~~g-~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~  179 (209)
T PRK11188        119 QVVMSDMAPNMSG-TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR  179 (209)
T ss_pred             CEEecCCCCccCC-ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH
Confidence            9999976554432 110 00    012468899999999999999965544 3455555554

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.34  E-value=1e-11  Score=108.00  Aligned_cols=107  Identities=11%  Similarity=-0.027  Sum_probs=83.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.+++.++.++..+|+++|.++.+++.+++|++.+++.++.++++|+.+..  ...+||+|+++..+
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            4567999999999999997666666799999999999999999999998878999999987642  23579999998874


Q ss_pred             cccccCCCChhhHHHHHHHHh--hccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~--~~LkpgG~lii~~~~~  277 (343)
                      ..        ......++.+.  .+|+|+|++++.+...
T Consensus       132 ~~--------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        132 RK--------GLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             CC--------ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            21        11223334443  3589999999876553

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.34  E-value=7.2e-12  Score=123.72  Aligned_cols=104  Identities=21%  Similarity=0.373  Sum_probs=84.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC--cc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~--~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++...  ..+++.++++|+...  ++ +++||+|+++.+
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~  112 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWL  112 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence            346799999999999999999985 489999999999998765332  125799999999643  33 578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ++++.     ......+++++.++|||||++++..
T Consensus       113 l~~l~-----~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        113 LMYLS-----DKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             HHhCC-----HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            88873     2345688999999999999999853

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.33  E-value=1.7e-11  Score=115.88  Aligned_cols=116  Identities=12%  Similarity=0.094  Sum_probs=90.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC---ccCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~---~~~~~fD~V~~~~  238 (343)
                      ..+..+||||||+|.++..++.. +...++|+|+++.++..+.+++...+++|+.++++|+...   ..++++|.|+++.
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF  200 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF  200 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence            34568999999999999999987 3348999999999999999999999988999999998653   2368999999875


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      ...+..- .........+++.+.++|+|||.+.+.+.....
T Consensus       201 PdPW~Kk-rHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y  240 (390)
T PRK14121        201 PVPWDKK-PHRRVISEDFLNEALRVLKPGGTLELRTDSELY  240 (390)
T ss_pred             CCCcccc-chhhccHHHHHHHHHHHcCCCcEEEEEEECHHH
Confidence            5432200 000111247899999999999999997766553

>TIGR03438 probable methyltransferase

Probab=99.33  E-value=5.3e-11  Score=110.54  Aligned_cols=108  Identities=17%  Similarity=0.211  Sum_probs=80.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCC-ccCCCc----c-E
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDT-KLERQF----Q-L  233 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~-~~~~~f----D-~  233 (343)
                      .++.+|||+|||+|..+..|++..  ..+|+|+|+|+.|++.+++++.... .-++.++++|+.+. .....+    . +
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            346799999999999999999873  2489999999999999999876532 12577899999874 332222    2 3


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +++..++.++     .+.+...++++++++|+|||.+++..-
T Consensus       142 ~~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       142 FFPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             EEecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            3333455444     356677899999999999999998543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.32  E-value=3e-11  Score=104.54  Aligned_cols=115  Identities=20%  Similarity=0.239  Sum_probs=80.0

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCCC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQ  230 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~~  230 (343)
                      ..++.+|||+|||+|.++..++...  ..+|+|+|+|+.+           ..+++.+++.|+.+..         ..++
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDK   98 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence            3678899999999999999888762  2379999999864           1247889999987642         2457


Q ss_pred             ccEEEECcccccccc----CCCChhhHHHHHHHHhhccCCCcEEEEEecC-CChHHHHHHHH
Q 019324          231 FQLVMDKGTLDAIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCN-STKDELVHEVS  287 (343)
Q Consensus       231 fD~V~~~~~l~~i~~----~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~-~~~~~~~~~~~  287 (343)
                      ||+|++++..+....    ++........++..+.++|+|||++++.... ....++...++
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~  160 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR  160 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence            999999764321110    1111123457889999999999999996543 33445555443

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.32  E-value=1.1e-11  Score=111.63  Aligned_cols=120  Identities=23%  Similarity=0.318  Sum_probs=96.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--C----ceEEEEccCCCCc------c-CC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--S----CIKFLVDDVLDTK------L-ER  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~----~i~~~~~D~~~~~------~-~~  229 (343)
                      .+...+|++|||-|..++..-..|...++|+||++..|+.|+++......  .    .+.|+.+|.....      + +.
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            56788999999999999999888888999999999999999998764321  1    3789999987643      1 33


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      +||+|-|.+++|+-.   ........+|.++.++|+|||++|-+.|+.  +.++..++
T Consensus       196 ~fDivScQF~~HYaF---etee~ar~~l~Nva~~LkpGG~FIgTiPds--d~Ii~rlr  248 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAF---ETEESARIALRNVAKCLKPGGVFIGTIPDS--DVIIKRLR  248 (389)
T ss_pred             CcceeeeeeeEeeee---ccHHHHHHHHHHHHhhcCCCcEEEEecCcH--HHHHHHHH
Confidence            499999999998763   555777789999999999999999886644  55555555

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.32  E-value=3.1e-11  Score=117.48  Aligned_cols=130  Identities=19%  Similarity=0.237  Sum_probs=96.7

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc---cCCCccEEEE
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK---LERQFQLVMD  236 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~---~~~~fD~V~~  236 (343)
                      ..++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++++..|+. .+.+..+|.....   ..++||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            357889999999999999999886 3348999999999999999999998875 2333667765543   2468999998


Q ss_pred             Ccccccccc---CCCC-----hh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324          237 KGTLDAIGL---HPDG-----PL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ  291 (343)
Q Consensus       237 ~~~l~~i~~---~~~~-----~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~  291 (343)
                      .......+.   +|+-     +.       ....+|.++.++|||||++++++|....++....+..|..
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~  385 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ  385 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence            654333221   2221     11       1357889999999999999999999987776666655543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK06202 hypothetical protein; Provisional

Probab=99.31  E-value=2.2e-11  Score=108.95  Aligned_cols=106  Identities=19%  Similarity=0.262  Sum_probs=79.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc----CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..|++.    |. .+|+|+|+|+.|++.|+++....   ++.+.+.+....+ .+++||+|++
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~  135 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS  135 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence            45679999999999998888752    32 38999999999999999876433   4566666555443 3579999999


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +.+++|+.     ..+...+++++.++++  |.+++......
T Consensus       136 ~~~lhh~~-----d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        136 NHFLHHLD-----DAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             CCeeecCC-----hHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence            99998883     2235578999999998  55566555544

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.31  E-value=7.1e-11  Score=102.54  Aligned_cols=176  Identities=19%  Similarity=0.201  Sum_probs=109.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC-----CC-----------------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-----FS-----------------------  213 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~-----~~-----------------------  213 (343)
                      ..+..+|||||.+|.++..+++. |...|.|+||++..|+.|++++...-     +.                       
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a  136 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA  136 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence            45789999999999999999998 77799999999999999999765321     00                       


Q ss_pred             --------------ceEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          214 --------------CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       214 --------------~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                                    |..+...|+... ....||+|+|..+-.+|.+..-+ ..+..+++.++++|.|||+|++..-.+..
T Consensus       137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD-~GL~~ff~kis~ll~pgGiLvvEPQpWks  214 (288)
T KOG2899|consen  137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGD-DGLRRFFRKISSLLHPGGILVVEPQPWKS  214 (288)
T ss_pred             ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEeccccc-HHHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence                          112222233311 24689999999888888654433 56678999999999999999997666654


Q ss_pred             HHHHH-HHHhhhhccccccccchhh-hhcccCCCCeeEecccccCCcccccCccCeeEeEEEEeeC
Q 019324          280 DELVH-EVSNLSQRRIGVSQEHEIK-DEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN  343 (343)
Q Consensus       280 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~p~~~f~g~~g~~v~~v~f~r~  343 (343)
                      ..... ..+.+....+.-...|... +...-...+|+....++.-+   -++.+|.......|+++
T Consensus       215 Y~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~---~~~skgf~R~i~~y~Kk  277 (288)
T KOG2899|consen  215 YKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIV---SAASKGFDRPILLYRKK  277 (288)
T ss_pred             HHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccc---cccCccccceeeeeecc
Confidence            33222 2223322222222222221 11111124556555544222   23445666666666653

>PRK00811 spermidine synthase; Provisional

Probab=99.30  E-value=5.1e-11  Score=109.57  Aligned_cols=110  Identities=19%  Similarity=0.298  Sum_probs=84.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC-----CCceEEEEccCCCCc--cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTK--LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~-----~~~i~~~~~D~~~~~--~~~~fD~V  234 (343)
                      ..+.+||+||||.|..+..++++ +..+|+++|+++.+++.|++.+...+     .++++++.+|+....  ..++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            45789999999999999999887 55689999999999999999876421     258999999987753  25789999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++...-. .  .+........+++.+.++|+|||++++...
T Consensus       155 i~D~~dp-~--~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        155 IVDSTDP-V--GPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             EECCCCC-C--CchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9864321 1  112122335788999999999999998543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=5.9e-11  Score=99.83  Aligned_cols=83  Identities=29%  Similarity=0.410  Sum_probs=73.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ..+.+|+|+|||||.+++..+-.|+..|+|+|+++.+++.+++|+...+ .++.|+++|+.+.  ...+|.++.|..+..
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~--~~~~dtvimNPPFG~  120 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDF--RGKFDTVIMNPPFGS  120 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhc--CCccceEEECCCCcc
Confidence            5678999999999999999999998899999999999999999999854 4899999999985  467999999999877


Q ss_pred             cccCCC
Q 019324          243 IGLHPD  248 (343)
Q Consensus       243 i~~~~~  248 (343)
                      ..-|.|
T Consensus       121 ~~rhaD  126 (198)
T COG2263         121 QRRHAD  126 (198)
T ss_pred             ccccCC
Confidence            654543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.29  E-value=6.1e-11  Score=110.86  Aligned_cols=108  Identities=22%  Similarity=0.188  Sum_probs=81.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECcccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~l~  241 (343)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++..+++++++|+++|+.+..  ..+.||+|+++..-.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~  251 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR  251 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence            46899999999999999999986 489999999999999999999999878999999997753  235799999875532


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  282 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  282 (343)
                      .+.      .   .+ .++...++|+++++++....+..+.
T Consensus       252 G~~------~---~~-~~~l~~~~~~~ivyvsc~p~t~~rd  282 (315)
T PRK03522        252 GIG------K---EL-CDYLSQMAPRFILYSSCNAQTMAKD  282 (315)
T ss_pred             Ccc------H---HH-HHHHHHcCCCeEEEEECCcccchhH
Confidence            210      1   12 2333446788777766544444433

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.28  E-value=2.7e-11  Score=108.32  Aligned_cols=111  Identities=18%  Similarity=0.292  Sum_probs=88.0

Q ss_pred             cchhhhhccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc----
Q 019324          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK----  226 (343)
Q Consensus       154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~----  226 (343)
                      .++..+....++.+|||+|||+|..+..++..  +..+|+++|+++.+++.|+++++..|+. +++++.+|+.+.-    
T Consensus        58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~  137 (234)
T PLN02781         58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL  137 (234)
T ss_pred             HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH
Confidence            34455556677899999999999988888764  2348999999999999999999999884 7999999997741    


Q ss_pred             ---cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          227 ---LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       227 ---~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                         ..++||+|+....-          .....+++.+.++|+|||++++..
T Consensus       138 ~~~~~~~fD~VfiDa~k----------~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        138 NNDPKPEFDFAFVDADK----------PNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             hCCCCCCCCEEEECCCH----------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence               13689999975321          233467899999999999998743

>PHA03411 putative methyltransferase; Provisional

Probab=99.28  E-value=3.7e-11  Score=108.12  Aligned_cols=104  Identities=15%  Similarity=0.230  Sum_probs=82.7

Q ss_pred             CCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ...+|||+|||+|.++..++... ..+|+|+|+|+.|++.++++.     +++.++++|+.+.....+||+|+++.++.+
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~  138 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGK  138 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence            35689999999999999887752 348999999999999999864     478999999998766678999999998876


Q ss_pred             cccCCCChhh---------------HHHHHHHHhhccCCCcEEEEEe
Q 019324          243 IGLHPDGPLK---------------RIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       243 i~~~~~~~~~---------------~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ...  .....               ...++.....+|+|+|.+++..
T Consensus       139 l~~--~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y  183 (279)
T PHA03411        139 INT--TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY  183 (279)
T ss_pred             cCc--hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence            521  11111               2467788899999999887753

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.27  E-value=2.5e-11  Score=105.60  Aligned_cols=98  Identities=19%  Similarity=0.263  Sum_probs=75.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-Cc-c-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK-L-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-~~-~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.....++|+|+|+.+++.+++       .+++++++|+.+ .. . +++||+|+++.+
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~   84 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEAFPDKSFDYVILSQT   84 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence            4577999999999999999987643479999999999999875       257888888875 22 2 578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++++       .+...+++++.+.++   .++++.++.
T Consensus        85 l~~~-------~d~~~~l~e~~r~~~---~~ii~~p~~  112 (194)
T TIGR02081        85 LQAT-------RNPEEILDEMLRVGR---HAIVSFPNF  112 (194)
T ss_pred             hHcC-------cCHHHHHHHHHHhCC---eEEEEcCCh
Confidence            9887       345567788877655   445555544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.27  E-value=8.6e-11  Score=103.77  Aligned_cols=131  Identities=23%  Similarity=0.285  Sum_probs=94.0

Q ss_pred             cCccccccccchhhhhcc-----CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEE
Q 019324          145 LNHVEDLKSEPVEENDKY-----LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKF  217 (343)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~-----~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~  217 (343)
                      ..+.+.+++.+...++..     ..+..|||+|||+|.++..++.. +...|+|+|.|+.|+..|.+|+..+++. ++.+
T Consensus       124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v  203 (328)
T KOG2904|consen  124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV  203 (328)
T ss_pred             eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence            334555555555444432     34568999999999999999876 5458999999999999999999998874 5777


Q ss_pred             EEccCCCCc------cCCCccEEEECcccc-------------------ccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          218 LVDDVLDTK------LERQFQLVMDKGTLD-------------------AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       218 ~~~D~~~~~------~~~~fD~V~~~~~l~-------------------~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      +..++....      +.+++|++++|..+-                   ++.-..++......++.-+.|.|+|||.+.+
T Consensus       204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            755444322      258999999996531                   0000223344556788889999999999999


Q ss_pred             Eec
Q 019324          273 TSC  275 (343)
Q Consensus       273 ~~~  275 (343)
                      ...
T Consensus       284 e~~  286 (328)
T KOG2904|consen  284 ELV  286 (328)
T ss_pred             Eec
Confidence            766

>PRK04457 spermidine synthase; Provisional

Probab=99.26  E-value=2.6e-11  Score=110.27  Aligned_cols=112  Identities=15%  Similarity=0.190  Sum_probs=85.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~~  238 (343)
                      .++.+|||||||+|.++..++.. +..+++++|+++.+++.|++++...+. ++++++.+|+.+..  .+++||+|+++.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            45679999999999999999876 334899999999999999998765543 58999999987642  246899999853


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                       ++..  .+........+++.+.++|+|||++++.....
T Consensus       145 -~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        145 -FDGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             -CCCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence             2211  11111233578999999999999999865444

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.26  E-value=4.6e-11  Score=111.24  Aligned_cols=99  Identities=18%  Similarity=0.239  Sum_probs=81.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-C-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.. . ..|+++|+++.+++.|++++...+.+++.++++|+.+... .++||+|++...
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g  158 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG  158 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc
Confidence            567899999999999999998862 1 2699999999999999999998888889999999876543 367999998755


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +..+             ...+.+.|+|||++++..
T Consensus       159 ~~~i-------------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        159 VDEV-------------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             hHHh-------------HHHHHHhcCCCCEEEEEe
Confidence            4333             245678999999988854

>PHA03412 putative methyltransferase; Provisional

Probab=99.25  E-value=5.2e-11  Score=104.83  Aligned_cols=101  Identities=17%  Similarity=0.252  Sum_probs=78.3

Q ss_pred             CCCeEEEEccCccHHHHHHHhc----CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      .+.+|||+|||+|.++..+++.    +..+|+|+|+++.+++.|+++.     .++.++..|+.....+++||+|++|..
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP  123 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP  123 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence            3679999999999999988874    2348999999999999999875     368899999987666779999999998


Q ss_pred             ccccccCC-----CChhhHHHHHHHHhhccCCCcE
Q 019324          240 LDAIGLHP-----DGPLKRIMYWDSVSKLVAPGGL  269 (343)
Q Consensus       240 l~~i~~~~-----~~~~~~~~~l~~~~~~LkpgG~  269 (343)
                      +..+....     ++......++..+.+++++|+.
T Consensus       124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            76543211     1223345688888887777765

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=2.4e-10  Score=100.73  Aligned_cols=117  Identities=22%  Similarity=0.272  Sum_probs=95.5

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccCCCccEEEEC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDK  237 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~~~fD~V~~~  237 (343)
                      .+.++.+|||.|.|+|.++..|+.. | ..+|+.+|+-+...+.|++|+...++.+ +++..+|+.+....+.||.|+..
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LD  170 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLD  170 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEc
Confidence            4588999999999999999999964 3 3589999999999999999999988865 99999999998777799999863


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHHhh
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVSNL  289 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~~~  289 (343)
                           +       .++..+++.+.++|||||.+++-+++-+ .....+.++++
T Consensus       171 -----m-------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~  211 (256)
T COG2519         171 -----L-------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER  211 (256)
T ss_pred             -----C-------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence                 2       3556788999999999999988766543 34444445443

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.22  E-value=8.5e-11  Score=101.66  Aligned_cols=126  Identities=10%  Similarity=-0.015  Sum_probs=90.9

Q ss_pred             CccccccccchhhhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCC
Q 019324          146 NHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD  224 (343)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~  224 (343)
                      ++.+.+.+.++.++....++.+|||++||+|.+++.++.+|+..|+++|.++.+++.+++|++.+++. +++++++|+.+
T Consensus        31 pt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~  110 (189)
T TIGR00095        31 PTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR  110 (189)
T ss_pred             CchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence            33334455555555444568899999999999999999998879999999999999999999999874 68999999955


Q ss_pred             Cc--c--C-CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          225 TK--L--E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       225 ~~--~--~-~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..  .  . ..||+|+....+..-     ........+.+ ..+|+++|++++.+...
T Consensus       111 ~l~~~~~~~~~~dvv~~DPPy~~~-----~~~~~l~~l~~-~~~l~~~~iiv~E~~~~  162 (189)
T TIGR00095       111 ALKFLAKKPTFDNVIYLDPPFFNG-----ALQALLELCEN-NWILEDTVLIVVEEDRE  162 (189)
T ss_pred             HHHHhhccCCCceEEEECcCCCCC-----cHHHHHHHHHH-CCCCCCCeEEEEEecCC
Confidence            31  1  2 247888887766421     11222222222 45789999988876543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02672 methionine S-methyltransferase

Probab=99.22  E-value=1.8e-10  Score=121.07  Aligned_cols=154  Identities=13%  Similarity=0.148  Sum_probs=108.8

Q ss_pred             CCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC----------------CceEEEEccCCCCcc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF----------------SCIKFLVDDVLDTKL  227 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~----------------~~i~~~~~D~~~~~~  227 (343)
                      +.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|++|+..+++                .+++|+++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999999999873 34899999999999999999987642                369999999987643


Q ss_pred             C--CCccEEEECcccc------c--------------------ccc-----CCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          228 E--RQFQLVMDKGTLD------A--------------------IGL-----HPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~--~~fD~V~~~~~l~------~--------------------i~~-----~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .  .+||+|++|...-      .                    ..+     +.++..-...++.++.++|+|||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            2  3699999986420      0                    111     13344445678889999999999999988


Q ss_pred             cCCChHHHH-HHHHh--hh------hcccc--ccccchhhhhcccCCCCeeEecc
Q 019324          275 CNSTKDELV-HEVSN--LS------QRRIG--VSQEHEIKDEEACREPPFRYLNH  318 (343)
Q Consensus       275 ~~~~~~~~~-~~~~~--~~------~~~~~--~~~~~~~~~~~~~~~~~f~~~~~  318 (343)
                      ...+.+.+. +.++.  |.      .+...  ..+...+..++...+..|++...
T Consensus       279 G~~q~~~v~~~l~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (1082)
T PLN02672        279 GGRPGQAVCERLFERRGFRITKLWQTKINQAADTDISALVEIEKNSRHRFEFFMG  333 (1082)
T ss_pred             CccHHHHHHHHHHHHCCCCeeEEeeehhhhccccchHHHHHHhhcCccceeeeec
Confidence            877777776 35543  21      11111  12233334555566677777665

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.22  E-value=2e-10  Score=112.29  Aligned_cols=110  Identities=18%  Similarity=0.231  Sum_probs=83.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----c-CCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~-~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++|+..+++.+++++++|+.+..    . +++||+|+++
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            466899999999999999999886 589999999999999999999998888999999987532    1 3579999987


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                      .....+          ...++.+.+ ++|+++++++....+....+.
T Consensus       375 PPr~g~----------~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~  410 (443)
T PRK13168        375 PPRAGA----------AEVMQALAK-LGPKRIVYVSCNPATLARDAG  410 (443)
T ss_pred             cCCcCh----------HHHHHHHHh-cCCCeEEEEEeChHHhhccHH
Confidence            554221          234455555 689888777654444333333

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.21  E-value=3.3e-10  Score=96.33  Aligned_cols=100  Identities=16%  Similarity=0.158  Sum_probs=76.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC-CCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++..  .++++++.+|+.+.... ..||.|+++..++
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~   88 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPYN   88 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence            456799999999999999999985 5899999999999999998754  24899999999998654 4699999987664


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ..      ......+++..  .+.++|.+++.
T Consensus        89 ~~------~~~i~~~l~~~--~~~~~~~l~~q  112 (169)
T smart00650       89 IS------TPILFKLLEEP--PAFRDAVLMVQ  112 (169)
T ss_pred             cH------HHHHHHHHhcC--CCcceEEEEEE
Confidence            32      12233333321  24578888775

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.21  E-value=2.1e-10  Score=109.67  Aligned_cols=133  Identities=17%  Similarity=0.156  Sum_probs=93.1

Q ss_pred             cCcccCccccccccchhhhhcc---CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEE
Q 019324          141 QGHMLNHVEDLKSEPVEENDKY---LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKF  217 (343)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~  217 (343)
                      +...+.+.+...+.+...+...   .++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|++|++.+++++++|
T Consensus       207 ~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~  285 (374)
T TIGR02085       207 PQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSF  285 (374)
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEE
Confidence            3334444444444444333221   356799999999999999999876 489999999999999999999998888999


Q ss_pred             EEccCCCCcc--CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          218 LVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       218 ~~~D~~~~~~--~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                      +++|+.+...  ..+||+|+.+..-..+         ...+++.+. .++|+++++++....+..+.+.
T Consensus       286 ~~~d~~~~~~~~~~~~D~vi~DPPr~G~---------~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~  344 (374)
T TIGR02085       286 AALDSAKFATAQMSAPELVLVNPPRRGI---------GKELCDYLS-QMAPKFILYSSCNAQTMAKDIA  344 (374)
T ss_pred             EECCHHHHHHhcCCCCCEEEECCCCCCC---------cHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHH
Confidence            9999976432  2469999987664322         123344454 4789988887754444444333

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PTZ00146 fibrillarin; Provisional

Probab=99.19  E-value=2.2e-10  Score=104.22  Aligned_cols=100  Identities=16%  Similarity=0.231  Sum_probs=76.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++. + ...|+++|+|+.+.+.+.+.+...  +|+.++..|+....    +..++|+|++
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEEE
Confidence            67889999999999999999987 3 238999999998765555544322  48899999987532    2457999998


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ...      .   +.+...++.++.++|||||.|++.
T Consensus       209 Dva------~---pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        209 DVA------Q---PDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             eCC------C---cchHHHHHHHHHHhccCCCEEEEE
Confidence            642      1   134445667899999999999994

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.18  E-value=1.2e-10  Score=110.49  Aligned_cols=126  Identities=24%  Similarity=0.297  Sum_probs=99.3

Q ss_pred             hhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCcc-----CCCc
Q 019324          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----ERQF  231 (343)
Q Consensus       159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~~-----~~~f  231 (343)
                      +.....+++||++.|=||.++...+..|+.+|++||.|..+++.|++|++.+|++  ++.|+++|+.++-.     ..+|
T Consensus       212 l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f  291 (393)
T COG1092         212 LGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF  291 (393)
T ss_pred             HhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence            3344558999999999999999999999889999999999999999999999984  58999999988632     3589


Q ss_pred             cEEEECccccccccCC----CChhhHHHHHHHHhhccCCCcEEEEEecCCCh--HHHHHHH
Q 019324          232 QLVMDKGTLDAIGLHP----DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK--DELVHEV  286 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~----~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~--~~~~~~~  286 (343)
                      |+|+...+-  +.-.+    ....+...++..+.++|+|||++++++|....  +.+.+.+
T Consensus       292 DlIilDPPs--F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i  350 (393)
T COG1092         292 DLIILDPPS--FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEII  350 (393)
T ss_pred             cEEEECCcc--cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHH
Confidence            999986532  11111    11245567889999999999999999887753  3444443

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.18  E-value=2.2e-10  Score=98.15  Aligned_cols=111  Identities=20%  Similarity=0.269  Sum_probs=87.8

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-cc-CCCccEEEECcccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~~-~~~fD~V~~~~~l~  241 (343)
                      .+.-|||||||+|..+..|.+.|. ..+|+|+|+.|++.|.++--.     -.++.+|+-.. ++ ++.||-+|+...++
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e-----gdlil~DMG~GlpfrpGtFDg~ISISAvQ  123 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE-----GDLILCDMGEGLPFRPGTFDGVISISAVQ  123 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-----cCeeeeecCCCCCCCCCccceEEEeeeee
Confidence            467899999999999999999985 899999999999999973221     24788887654 33 79999999988887


Q ss_pred             ccccCCCC-----hhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          242 AIGLHPDG-----PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       242 ~i~~~~~~-----~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      ++ +|.+.     ...+..++..++.+|++|++.++.....+...
T Consensus       124 WL-cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q  167 (270)
T KOG1541|consen  124 WL-CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ  167 (270)
T ss_pred             ee-cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence            66 33322     24456788899999999999999877666544

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.16  E-value=5.5e-11  Score=102.16  Aligned_cols=127  Identities=17%  Similarity=0.208  Sum_probs=94.3

Q ss_pred             ccCccccccccchhhhhcc-CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEcc
Q 019324          144 MLNHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD  221 (343)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D  221 (343)
                      +.++.+.+++.++.++... ..+.++||+.||+|.+++..+.+|+.+|+.||.++.++...++|++..+.. ++.++..|
T Consensus        21 ~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d  100 (183)
T PF03602_consen   21 TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD  100 (183)
T ss_dssp             S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred             cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence            3445555677777777766 789999999999999999999999999999999999999999999998875 48999999


Q ss_pred             CCCCc-----cCCCccEEEECccccccccCCCChhhHHHHHHHHh--hccCCCcEEEEEecCC
Q 019324          222 VLDTK-----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNS  277 (343)
Q Consensus       222 ~~~~~-----~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~--~~LkpgG~lii~~~~~  277 (343)
                      +...-     ...+||+|++..++..-       .....+++.+.  .+|+++|++++.+...
T Consensus       101 ~~~~l~~~~~~~~~fDiIflDPPY~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  101 AFKFLLKLAKKGEKFDIIFLDPPYAKG-------LYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHHHHHCTS-EEEEEE--STTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HHHHHHhhcccCCCceEEEECCCcccc-------hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            65532     25789999998776433       11345666665  8999999999987655

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PLN02366 spermidine synthase

Probab=99.15  E-value=1e-09  Score=101.73  Aligned_cols=109  Identities=16%  Similarity=0.315  Sum_probs=83.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCc---cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK---LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~---~~~~fD~V  234 (343)
                      ..+++||+||||.|.++..+++++ ..+|+.+|+++.+++.+++.+...+    -++++++.+|+....   ..++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            457899999999999999999884 4589999999999999999875421    258999999976542   24689999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ++...-. .  .+........+++.+.++|+|||++++..
T Consensus       170 i~D~~dp-~--~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        170 IVDSSDP-V--GPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEcCCCC-C--CchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            9864321 1  12222234578899999999999998743

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.15  E-value=9.4e-10  Score=101.52  Aligned_cols=117  Identities=20%  Similarity=0.174  Sum_probs=95.2

Q ss_pred             hhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCCCCccCC-CccEEE
Q 019324          158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLER-QFQLVM  235 (343)
Q Consensus       158 ~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~~~~~-~fD~V~  235 (343)
                      .+.+..++..|||-.||||.+++.+.-.|. .++|+|++..|++-++.|++..+++...+... |++..++++ ++|.|+
T Consensus       191 NLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIa  269 (347)
T COG1041         191 NLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIA  269 (347)
T ss_pred             HHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEE
Confidence            345568889999999999999999999987 89999999999999999999999877766666 999998854 599999


Q ss_pred             ECccccccc-cCCCC-hhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          236 DKGTLDAIG-LHPDG-PLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       236 ~~~~l~~i~-~~~~~-~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +.....--. ..... ......+++.+.++||+||++++..+
T Consensus       270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            976553321 11111 23356788999999999999999887

>TIGR00417 speE spermidine synthase

Probab=99.13  E-value=1.2e-09  Score=99.98  Aligned_cols=111  Identities=23%  Similarity=0.314  Sum_probs=83.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      ..+.+||+||||+|.++..+++.+ ..+++++|+++.+++.+++.+...+    .++++++.+|.....  ..++||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            345699999999999999998874 5589999999999999999875432    247888888876532  256899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +..... .  ++........+++.+.++|+|||++++...+
T Consensus       151 ~D~~~~-~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       151 VDSTDP-V--GPAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             EeCCCC-C--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            865421 1  1221122457889999999999999986443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=99.11  E-value=4e-10  Score=105.25  Aligned_cols=112  Identities=19%  Similarity=0.198  Sum_probs=83.0

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHH--H---H--cCCCceEEEEccCCCCc--cCCCc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA--N---R--DGFSCIKFLVDDVLDTK--LERQF  231 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~--~---~--~~~~~i~~~~~D~~~~~--~~~~f  231 (343)
                      ...+.+||+||||.|..+..+++.+ ..+|+++|+++.+++.|++..  .   .  ...++++++.+|+.+..  ..+.|
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            3567899999999999999998874 458999999999999999721  1   1  12258999999998753  25689


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |+|++... +... .+........+++.+.+.|+|||++++...
T Consensus       228 DVIIvDl~-DP~~-~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        228 DVIIIDFP-DPAT-ELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             cEEEEcCC-Cccc-cchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            99998742 1110 011123335688999999999999988644

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.10  E-value=2.9e-10  Score=103.78  Aligned_cols=124  Identities=23%  Similarity=0.263  Sum_probs=89.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc----cCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK----LERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~----~~~~fD~V~~  236 (343)
                      .++++|||+.|=||.++...+..|+.+|++||.|..+++.+++|+..++++  +++|++.|+.+.-    ..++||+|++
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            568899999999999999999989889999999999999999999999974  7999999998742    2569999998


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh--HHHHHHHH
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK--DELVHEVS  287 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~--~~~~~~~~  287 (343)
                      ..+-- ..-...-..+...++..+.++|+|||.+++++|.+..  +.+.+.+.
T Consensus       202 DPPsF-~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~  253 (286)
T PF10672_consen  202 DPPSF-AKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVA  253 (286)
T ss_dssp             --SSE-ESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHH
T ss_pred             CCCCC-CCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHH
Confidence            65421 1001111234557788999999999999988877653  33444444

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.09  E-value=5.6e-10  Score=94.04  Aligned_cols=90  Identities=18%  Similarity=0.406  Sum_probs=71.7

Q ss_pred             EEEeCChHHHHHHHHHHHHcC---CCceEEEEccCCCCcc-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCC
Q 019324          191 TGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP  266 (343)
Q Consensus       191 ~gvD~s~~~i~~a~~~~~~~~---~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkp  266 (343)
                      +|+|+|+.|++.|+++....+   ..+++++++|+.+.+. +++||+|++..+++++       .+...++++++|+|||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcCc
Confidence            489999999999987765322   2479999999999876 5689999999888877       4667889999999999


Q ss_pred             CcEEEEEecCCChHHHHHHHH
Q 019324          267 GGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       267 gG~lii~~~~~~~~~~~~~~~  287 (343)
                      ||.+++.............+.
T Consensus        74 GG~l~i~d~~~~~~~~~~~~~   94 (160)
T PLN02232         74 GSRVSILDFNKSNQSVTTFMQ   94 (160)
T ss_pred             CeEEEEEECCCCChHHHHHHH
Confidence            999999877665544444333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.09  E-value=1.9e-11  Score=105.26  Aligned_cols=100  Identities=26%  Similarity=0.355  Sum_probs=78.8

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC---ccCCCccEEEECcccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGTLD  241 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~---~~~~~fD~V~~~~~l~  241 (343)
                      -.++||+|||||..+..|... ..+++|+|+|.+|++.|.++-...     .+.+.|+..+   ..++.||+|.+..++.
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD-----~L~~Aea~~Fl~~~~~er~DLi~AaDVl~  199 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYD-----TLYVAEAVLFLEDLTQERFDLIVAADVLP  199 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchH-----HHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence            579999999999999999887 458999999999999998853322     2233343322   1357899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++       .....++--+...|+|||.+.|++-..
T Consensus       200 Yl-------G~Le~~~~~aa~~L~~gGlfaFSvE~l  228 (287)
T COG4976         200 YL-------GALEGLFAGAAGLLAPGGLFAFSVETL  228 (287)
T ss_pred             hh-------cchhhHHHHHHHhcCCCceEEEEeccc
Confidence            88       466778899999999999999975433

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.08  E-value=1.9e-10  Score=100.04  Aligned_cols=103  Identities=17%  Similarity=0.287  Sum_probs=76.4

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc-cCCCccEEEECccccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDA  242 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~~  242 (343)
                      ...++|+|||+|.-++.++++ +.+|+|+|+|+.|++.+++.....-. ....+...++.++. .+++.|+|++-.++|+
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW  112 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW  112 (261)
T ss_pred             cceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence            348999999999888888888 67999999999999999985432111 11233333333332 2689999999999988


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCc-EEEEEecC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGG-LLVITSCN  276 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG-~lii~~~~  276 (343)
                      +        +...++++++|+||+.| ++.+-..+
T Consensus       113 F--------dle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  113 F--------DLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             h--------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            7        56678899999998766 66665555

>PLN02476 O-methyltransferase

Probab=99.07  E-value=1.1e-09  Score=99.59  Aligned_cols=113  Identities=12%  Similarity=0.170  Sum_probs=90.5

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc-
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-  226 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~-  226 (343)
                      ....++..+....++++|||||||+|..+.+++.. + ..+|+++|.++...+.|+++++..|+. +++++.+|+.+.- 
T Consensus       105 ~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~  184 (278)
T PLN02476        105 DQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLK  184 (278)
T ss_pred             HHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            34445555666678899999999999999999874 2 237999999999999999999999985 7999999987642 


Q ss_pred             -c-----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          227 -L-----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       227 -~-----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                       +     .++||+|+..+.          ......+++.+.++|+|||++++.
T Consensus       185 ~l~~~~~~~~FD~VFIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        185 SMIQNGEGSSYDFAFVDAD----------KRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             HHHhcccCCCCCEEEECCC----------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence             1     357999996432          134567889999999999999985

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.05  E-value=5e-10  Score=97.83  Aligned_cols=109  Identities=20%  Similarity=0.316  Sum_probs=86.6

Q ss_pred             chhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc----
Q 019324          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL----  227 (343)
Q Consensus       155 ~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~----  227 (343)
                      ++..+....++++||||||++|..+.++++. + ..+|+.+|+++...+.|++++...|+ .+|+++.+|+.+.-.    
T Consensus        36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~  115 (205)
T PF01596_consen   36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN  115 (205)
T ss_dssp             HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence            3444555567899999999999999999975 2 24899999999999999999999888 479999999876421    


Q ss_pred             ---CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          228 ---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       228 ---~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                         .++||+|+....          ......+++.+.++|+|||++++.
T Consensus       116 ~~~~~~fD~VFiDa~----------K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  116 DGEEGQFDFVFIDAD----------KRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             TTTTTSEEEEEEEST----------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCceeEEEEccc----------ccchhhHHHHHhhhccCCeEEEEc
Confidence               257999997542          134457889999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.05  E-value=1.4e-09  Score=92.28  Aligned_cols=129  Identities=18%  Similarity=0.188  Sum_probs=99.7

Q ss_pred             cccCccccccccchhhhhc-cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEc
Q 019324          143 HMLNHVEDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVD  220 (343)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~  220 (343)
                      ...++.+.+++.++.++.. ...+.++||+.+|+|.+++..+.+|+..++.+|.+..++...++|.+..++ .++.++..
T Consensus        21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~  100 (187)
T COG0742          21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN  100 (187)
T ss_pred             CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence            3445566677777777777 478999999999999999999999999999999999999999999999885 47899999


Q ss_pred             cCCCCc--cC--CCccEEEECccccccccCCCChhhHHHHHHH--HhhccCCCcEEEEEecCC
Q 019324          221 DVLDTK--LE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDS--VSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       221 D~~~~~--~~--~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~--~~~~LkpgG~lii~~~~~  277 (343)
                      |+....  ..  ++||+|+...++..=      ..+....+..  -..+|+|+|.+++.....
T Consensus       101 da~~~L~~~~~~~~FDlVflDPPy~~~------l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         101 DALRALKQLGTREPFDLVFLDPPYAKG------LLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             cHHHHHHhcCCCCcccEEEeCCCCccc------hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            988431  22  359999998877521      1111222222  567899999999976655

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.05  E-value=1.1e-09  Score=95.75  Aligned_cols=110  Identities=25%  Similarity=0.340  Sum_probs=87.9

Q ss_pred             cchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEE-ccCCCCc---
Q 019324          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLV-DDVLDTK---  226 (343)
Q Consensus       154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~-~D~~~~~---  226 (343)
                      .++..+....++++|||||++.|..+++|+.. + ..+++.||+++.+.+.|+++++..|+. ++..+. +|..+.-   
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~  128 (219)
T COG4122          49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL  128 (219)
T ss_pred             HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence            34444555578999999999999999999987 3 348999999999999999999999985 488888 4766542   


Q ss_pred             cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       227 ~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ..++||+|+...         ++ .+...+++.+.++|+|||++++.
T Consensus       129 ~~~~fDliFIDa---------dK-~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         129 LDGSFDLVFIDA---------DK-ADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             cCCCccEEEEeC---------Ch-hhCHHHHHHHHHHhCCCcEEEEe
Confidence            258999999632         11 33446889999999999999994

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=99.04  E-value=1.1e-09  Score=104.58  Aligned_cols=112  Identities=30%  Similarity=0.427  Sum_probs=93.6

Q ss_pred             CCCC-eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSW-SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~-~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .+.. ++|-+|||+..++..+.+.|+..|+.+|+|+.+++.+..+... ..+-+.+...|+....+ +++||+|+..+++
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~~~~~~~~~d~~~l~fedESFdiVIdkGtl  124 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ERPEMQMVEMDMDQLVFEDESFDIVIDKGTL  124 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CCcceEEEEecchhccCCCcceeEEEecCcc
Confidence            3344 8999999999999999999999999999999999999876542 22468999999999876 6899999999999


Q ss_pred             cccccCCCChh---hHHHHHHHHhhccCCCcEEEEEec
Q 019324          241 DAIGLHPDGPL---KRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       241 ~~i~~~~~~~~---~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |++....+...   .....+.++.++|++||+++..++
T Consensus       125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            99965444433   455778999999999999888666

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.04  E-value=9.9e-10  Score=107.21  Aligned_cols=102  Identities=17%  Similarity=0.274  Sum_probs=78.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----c-CCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~-~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.|++|+..+++.+++|+++|+.+..    . ..+||+|+.+
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence            456899999999999999999874 489999999999999999999999889999999987531    1 3579999976


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ..-..+         ...+++.+.+ ++|+++++++ |+
T Consensus       370 PPr~G~---------~~~~l~~l~~-l~~~~ivyvs-c~  397 (431)
T TIGR00479       370 PPRKGC---------AAEVLRTIIE-LKPERIVYVS-CN  397 (431)
T ss_pred             cCCCCC---------CHHHHHHHHh-cCCCEEEEEc-CC
Confidence            542211         1234455443 7898876665 44

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.03  E-value=5.1e-09  Score=102.23  Aligned_cols=128  Identities=20%  Similarity=0.270  Sum_probs=100.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~  238 (343)
                      .++.+|||+|||.|.-+..++..  +...|+++|+++.-++.+++|++..|+.++.+...|...+.  ..+.||.|+...
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa  191 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA  191 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence            67889999999999999999886  22379999999999999999999999989999999987653  356899999765


Q ss_pred             ccccccc---CCCC-----h-------hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhh
Q 019324          239 TLDAIGL---HPDG-----P-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  290 (343)
Q Consensus       239 ~l~~i~~---~~~~-----~-------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~  290 (343)
                      .......   +|+.     .       .....+|.++.+.|||||+|+.++|....+|.-..+..|-
T Consensus       192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L  258 (470)
T PRK11933        192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLK  258 (470)
T ss_pred             CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            4433321   1111     0       1114788999999999999999999988877766665443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.03  E-value=2.1e-09  Score=102.32  Aligned_cols=74  Identities=15%  Similarity=0.260  Sum_probs=62.4

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--c---------------
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L---------------  227 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~---------------  227 (343)
                      +.+|||++||+|.++..+++. +.+|+|+|+++.|++.+++|+..+++.+++|+.+|+.+..  .               
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            357999999999999988886 4589999999999999999999999889999999987631  1               


Q ss_pred             CCCccEEEECcc
Q 019324          228 ERQFQLVMDKGT  239 (343)
Q Consensus       228 ~~~fD~V~~~~~  239 (343)
                      ...||+|+....
T Consensus       286 ~~~~D~v~lDPP  297 (362)
T PRK05031        286 SYNFSTIFVDPP  297 (362)
T ss_pred             CCCCCEEEECCC
Confidence            114899887655

>PRK03612 spermidine synthase; Provisional

Probab=99.03  E-value=1.1e-09  Score=108.96  Aligned_cols=111  Identities=24%  Similarity=0.316  Sum_probs=83.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHH--HH-----cCCCceEEEEccCCCCc--cCCCcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLA--NR-----DGFSCIKFLVDDVLDTK--LERQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~--~~-----~~~~~i~~~~~D~~~~~--~~~~fD  232 (343)
                      .++++|||||||+|..+..+++++. .+++++|+++.+++.++++.  ..     ...++++++.+|..+..  .+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            4578999999999999999998754 69999999999999999842  21     11257999999988743  257899


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +|+++......  ..........+++.+.++|||||++++...
T Consensus       376 vIi~D~~~~~~--~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        376 VIIVDLPDPSN--PALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             EEEEeCCCCCC--cchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            99997432211  000112234678999999999999998654

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.03  E-value=2.5e-09  Score=101.38  Aligned_cols=107  Identities=13%  Similarity=0.102  Sum_probs=76.2

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC----------------
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE----------------  228 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~----------------  228 (343)
                      +.+|||+|||+|.++..+++. +.+|+|+|+++.|++.+++|+..+++.+++|+++|+.+....                
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            347999999999999988887 458999999999999999999999988899999998763211                


Q ss_pred             -CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          229 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       229 -~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                       ..||+|+....         .......+++.+.   +|+++++++....+..+.+.
T Consensus       277 ~~~~d~v~lDPP---------R~G~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~  321 (353)
T TIGR02143       277 SYNCSTIFVDPP---------RAGLDPDTCKLVQ---AYERILYISCNPETLKANLE  321 (353)
T ss_pred             cCCCCEEEECCC---------CCCCcHHHHHHHH---cCCcEEEEEcCHHHHHHHHH
Confidence             13688876544         2122223444444   37777776544433333333

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.02  E-value=1.2e-09  Score=94.81  Aligned_cols=113  Identities=19%  Similarity=0.262  Sum_probs=83.0

Q ss_pred             CeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEECccc
Q 019324          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKGTL  240 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~~~~l  240 (343)
                      ..+||||||.|.++..+|.. +...++|+|+....+..+.+++...+++|+.++++|+...-    .++++|-|+.+.+=
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            38999999999999999987 44489999999999999999999999999999999998842    25889988876543


Q ss_pred             ccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          241 DAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       241 ~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      -+.-- |.....-...+++.+.++|+|||.+.+.+-...
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~  137 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE  137 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence            22200 000011124788999999999999999876654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.00  E-value=1.4e-09  Score=99.91  Aligned_cols=105  Identities=21%  Similarity=0.251  Sum_probs=82.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccC-CCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~-~~fD~V~~~~~l  240 (343)
                      .+++.|||+|||+|.++...++.|+.+|+|+|.|.-+ +.|++.+..+++.+ ++++++.+.+..++ ++.|+|++-..=
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG  137 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG  137 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence            5689999999999999999999998899999998776 99999999999865 89999999888765 899999984321


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      .++.    -......++-.--+.|+|||.++=
T Consensus       138 y~Ll----~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  138 YFLL----YESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             HHHH----HhhhhhhhhhhhhhccCCCceEcc
Confidence            1110    011222334445688999998864

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.99  E-value=3e-09  Score=90.77  Aligned_cols=107  Identities=20%  Similarity=0.244  Sum_probs=75.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC---CCceEEEEccCCCCc----c-CCCccE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTK----L-ERQFQL  233 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~---~~~i~~~~~D~~~~~----~-~~~fD~  233 (343)
                      .++.+|||+|||+|..++.++.. +..+|+.+|+++ .++.++.|+..++   ..++.+...|..+..    . ..+||+
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            56889999999999999999998 666999999999 9999999999876   247888888876532    1 358999


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      |++..++..-       .....+++-+.++|+|+|.+++....+
T Consensus       123 IlasDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  123 ILASDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEecccchH-------HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            9998877543       566778899999999999987776655

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=2.3e-08  Score=83.49  Aligned_cols=122  Identities=15%  Similarity=0.192  Sum_probs=94.6

Q ss_pred             CCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      +.-+||||||+|..+..|++.  +..-+.++|++|.+++..++.+..++. ++..++.|+...-..++.|+++.|..+--
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYVp  122 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYVP  122 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcCc
Confidence            678999999999999999887  334789999999999999999988886 78999999888655689999998865421


Q ss_pred             cc--------------cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          243 IG--------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       243 i~--------------~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      -.              -..++..-..+++..+-.+|.|.|.+++.....+ ..+++..++
T Consensus       123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~  182 (209)
T KOG3191|consen  123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE  182 (209)
T ss_pred             CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence            11              1233444456778888899999999999776655 455555444

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.95  E-value=3.1e-09  Score=92.14  Aligned_cols=106  Identities=22%  Similarity=0.360  Sum_probs=70.2

Q ss_pred             CCCeEEEEccCccH----HHHHHHhc-----CCC-cEEEEeCChHHHHHHHHHH---------------H----HcC---
Q 019324          164 SSWSVLDIGTGNGL----LLQELSKQ-----GFS-DLTGVDYSEDAINLAQSLA---------------N----RDG---  211 (343)
Q Consensus       164 ~~~~VLDiGcG~G~----~~~~la~~-----g~~-~v~gvD~s~~~i~~a~~~~---------------~----~~~---  211 (343)
                      +..+|+.+||++|.    +++.+.+.     +.. +|+|+|+|+.+++.|++-.               .    ..+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            56799999999994    45555551     212 8999999999999998621               0    001   


Q ss_pred             -----C-CceEEEEccCCC-CccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          212 -----F-SCIKFLVDDVLD-TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       212 -----~-~~i~~~~~D~~~-~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                           + .+|.|.+.|+.+ .+..+.||+|+|.+++-++.     ......+++.+++.|+|||+|++..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~-----~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD-----PETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC-----HHHHHHHHHHHHHHcCCCCEEEEec
Confidence                 0 268999999999 44568999999999997773     4566789999999999999999853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.94  E-value=6.2e-09  Score=93.62  Aligned_cols=99  Identities=19%  Similarity=0.261  Sum_probs=80.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+..+|||||+|.|.++..+++. +..+++.+|. |.+++.+++      .++|+++.+|+. .+.+. +|+++...+++
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f-~~~P~-~D~~~l~~vLh  169 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF-DPLPV-ADVYLLRHVLH  169 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT-TCCSS-ESEEEEESSGG
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH-hhhcc-ccceeeehhhh
Confidence            44568999999999999999887 3348999999 888998888      259999999999 44555 99999998887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCC--cEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPG--GLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~Lkpg--G~lii~~~  275 (343)
                      ..     .+.+...+|+++++.|+||  |+|+|...
T Consensus       170 ~~-----~d~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  170 DW-----SDEDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             GS------HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             hc-----chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            66     3578889999999999999  99999644

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.94  E-value=4.9e-09  Score=92.96  Aligned_cols=93  Identities=19%  Similarity=0.320  Sum_probs=75.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~~  242 (343)
                      ...++||||+|.|..+..++.. +.+|+++|.|+.|....+++       +.+++  |..++. .+.+||+|.|.+++|.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k-------g~~vl--~~~~w~~~~~~fDvIscLNvLDR  163 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK-------GFTVL--DIDDWQQTDFKFDVISCLNVLDR  163 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC-------CCeEE--ehhhhhccCCceEEEeehhhhhc
Confidence            5678999999999999999887 77999999999998777762       33333  333333 2468999999999987


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .       ..+..+|+.+++.|+|+|++++.
T Consensus       164 c-------~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  164 C-------DRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             c-------CCHHHHHHHHHHHhCCCCEEEEE
Confidence            6       56678899999999999999984

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.93  E-value=1.3e-08  Score=90.03  Aligned_cols=116  Identities=19%  Similarity=0.234  Sum_probs=90.0

Q ss_pred             CeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEECccc
Q 019324          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKGTL  240 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~~~~l  240 (343)
                      ..+||||||.|.++..+|++ +...++|+|+....+..|.+.+...+++|+.+++.|+....    .+++.|-|+.+++=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            58999999999999999998 44489999999999999999999999889999999988753    24588888876543


Q ss_pred             cccc-cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          241 DAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       241 ~~i~-~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      -+.- -|.....-...+++.+.++|+|||.+.+.+-+...-+
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e  171 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFE  171 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHH
Confidence            2220 0111112224788999999999999999877665433

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.93  E-value=5.1e-09  Score=93.74  Aligned_cols=115  Identities=21%  Similarity=0.273  Sum_probs=84.5

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc----CCCccE
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL----ERQFQL  233 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~----~~~fD~  233 (343)
                      .+.++.+|||.|.|+|.++..|+.. + ..+|+.+|+.+...+.|+++++..++. ++.+.+.|+.+..+    +..+|.
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da  116 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA  116 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence            4488999999999999999999976 3 348999999999999999999999985 79999999975333    357888


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhcc-CCCcEEEEEecCCC-hHHHHHHHH
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~L-kpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      |+..-         +   .+...+..+.++| ||||++.+-+|+-+ -...++.++
T Consensus       117 vfLDl---------p---~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~  160 (247)
T PF08704_consen  117 VFLDL---------P---DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR  160 (247)
T ss_dssp             EEEES---------S---SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             EEEeC---------C---CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH
Confidence            88632         1   2234568999999 89999988666543 344555554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.93  E-value=4.4e-09  Score=90.20  Aligned_cols=120  Identities=17%  Similarity=0.186  Sum_probs=81.7

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCC-c---------EEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc-cC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFS-D---------LTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~-~---------v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~-~~  228 (343)
                      ...++..|||..||+|.+.+..+..+.. .         ++|+|+++.+++.+++|+...++. .+.+.+.|+.+++ .+
T Consensus        25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~  104 (179)
T PF01170_consen   25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPD  104 (179)
T ss_dssp             T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTT
T ss_pred             CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccccc
Confidence            3467789999999999999887766321 3         889999999999999999998874 5899999999988 47


Q ss_pred             CCccEEEECcccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          229 RQFQLVMDKGTLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      +++|+|+++..+..-.- ..+...-...+++++.++|++ ..+++.+.......
T Consensus       105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~~  157 (179)
T PF01170_consen  105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELEK  157 (179)
T ss_dssp             SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHHH
T ss_pred             CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHH
Confidence            89999999987653210 000112234677889999999 55555555544433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.90  E-value=7.1e-09  Score=93.02  Aligned_cols=110  Identities=16%  Similarity=0.216  Sum_probs=87.6

Q ss_pred             cchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc---
Q 019324          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL---  227 (343)
Q Consensus       154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~---  227 (343)
                      .++..+....+.++|||||+++|..+.+++.. + ..+|+.+|.++...+.|+++++..|+ .+|+++.+|+.+.-.   
T Consensus        69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~  148 (247)
T PLN02589         69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI  148 (247)
T ss_pred             HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence            44445555577889999999999999999875 2 23899999999999999999999987 579999999876421   


Q ss_pred             -----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          228 -----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       228 -----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                           .++||+|+...-          ......+++.+.++|+|||++++.
T Consensus       149 ~~~~~~~~fD~iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        149 EDGKYHGTFDFIFVDAD----------KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             hccccCCcccEEEecCC----------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence                 258999996432          134456788899999999999884

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.90  E-value=5e-09  Score=100.03  Aligned_cols=98  Identities=27%  Similarity=0.271  Sum_probs=80.9

Q ss_pred             CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  242 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~  242 (343)
                      +.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|++.++++++.+.++|+..... .+.||+|+.+..   
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~---  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF---  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence            468999999999999999875 545899999999999999999999998888899999876433 467999987542   


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                              .....++..+.+.+++||+++++
T Consensus       135 --------Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 --------GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             --------CCcHHHHHHHHHHhcCCCEEEEE
Confidence                    12235678878889999999997

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.90  E-value=8.1e-09  Score=100.38  Aligned_cols=103  Identities=19%  Similarity=0.353  Sum_probs=77.6

Q ss_pred             CCeEEEEccCccHHHHHHHhcC-----CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQG-----FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-----~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      +..|||+|||+|.++...++.+     ..+|++++-++.++...++++..++. .+|+++.+|+++...+.++|+|++- 
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSE-  265 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSE-  265 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEe-
Confidence            5789999999999988777664     45999999999999998888777776 5899999999999988899999983 


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      .+..+..+    +.....|....|.|||||+++=
T Consensus       266 lLGsfg~n----El~pE~Lda~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  266 LLGSFGDN----ELSPECLDAADRFLKPDGIMIP  295 (448)
T ss_dssp             --BTTBTT----TSHHHHHHHGGGGEEEEEEEES
T ss_pred             ccCCcccc----ccCHHHHHHHHhhcCCCCEEeC
Confidence            33333211    1223467889999999998753

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.90  E-value=5.1e-09  Score=90.77  Aligned_cols=105  Identities=18%  Similarity=0.248  Sum_probs=80.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      ....+.||.|||.|+++..++..-+.+|-.+|..+..++.|++.+......-.++++..+.++.+ +.+||+|.+.-++.
T Consensus        54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            34679999999999999988766577999999999999999986654222247889999998877 47999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      |+.     ..+...+|+++.+.|+|+|++++
T Consensus       134 hLT-----D~dlv~fL~RCk~~L~~~G~Ivv  159 (218)
T PF05891_consen  134 HLT-----DEDLVAFLKRCKQALKPNGVIVV  159 (218)
T ss_dssp             GS------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCC-----HHHHHHHHHHHHHhCcCCcEEEE
Confidence            884     57889999999999999999999

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.4e-08  Score=98.24  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=86.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~~~  238 (343)
                      .++.++||+-||.|++++.|++. ..+|+|+|+++.+++.|++|++.+++.|+.|..+++.+...    ...+|+|+...
T Consensus       292 ~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP  370 (432)
T COG2265         292 AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP  370 (432)
T ss_pred             cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence            46689999999999999999987 45999999999999999999999999999999999988754    24789888754


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      .=..+         -..+++.+. .++|..+++++.-..+....+..+.
T Consensus       371 PR~G~---------~~~~lk~l~-~~~p~~IvYVSCNP~TlaRDl~~L~  409 (432)
T COG2265         371 PRAGA---------DREVLKQLA-KLKPKRIVYVSCNPATLARDLAILA  409 (432)
T ss_pred             CCCCC---------CHHHHHHHH-hcCCCcEEEEeCCHHHHHHHHHHHH
Confidence            32222         123344444 4478777777654445555555554

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.88  E-value=2.4e-08  Score=92.96  Aligned_cols=109  Identities=15%  Similarity=0.164  Sum_probs=92.1

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccC-CCccEEEECc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKG  238 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~-~~fD~V~~~~  238 (343)
                      ....+.+|||+.||.|-+++.++..|...|+++|++|.+++.+++|+..|++.+ +..+++|+...... +.+|-|+++-
T Consensus       185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~  264 (341)
T COG2520         185 LVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL  264 (341)
T ss_pred             hhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence            335689999999999999999999987569999999999999999999999865 99999999998765 7899999864


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  280 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~  280 (343)
                      .-           ....++..+.+.+++||++-+........
T Consensus       265 p~-----------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~  295 (341)
T COG2520         265 PK-----------SAHEFLPLALELLKDGGIIHYYEFVPEDD  295 (341)
T ss_pred             CC-----------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence            42           33467899999999999988866555443

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.88  E-value=2.3e-08  Score=89.86  Aligned_cols=111  Identities=20%  Similarity=0.260  Sum_probs=91.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C--CCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCCCCc----cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTK----LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~~~~----~~~~fD~V  234 (343)
                      ..+-+||||.||.|+..+..... +  ..+|.-.|+|+..|+..++.++..|+.++ +|.++|+.+..    ....++++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            46789999999999988877665 3  24899999999999999999999999876 99999998863    24568999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +..+.++.+.    +.......+..+.++|.|||+++.+.-++
T Consensus       214 iVsGL~ElF~----Dn~lv~~sl~gl~~al~pgG~lIyTgQPw  252 (311)
T PF12147_consen  214 IVSGLYELFP----DNDLVRRSLAGLARALEPGGYLIYTGQPW  252 (311)
T ss_pred             EEecchhhCC----cHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence            9999998772    23345567899999999999999976333

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.88  E-value=5.6e-09  Score=90.67  Aligned_cols=99  Identities=19%  Similarity=0.239  Sum_probs=73.4

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      ..++.+|||+.||.|.+++.+++. ..+.|+|+|++|.+++.+++++..+++. ++..+.+|+.+....+.+|-|+++-.
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp  178 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP  178 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence            367899999999999999999984 2348999999999999999999999985 58999999998866788999998654


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEE
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLV  271 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~li  271 (343)
                      -...           .+|..+.+++++||++-
T Consensus       179 ~~~~-----------~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  179 ESSL-----------EFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             SSGG-----------GGHHHHHHHEEEEEEEE
T ss_pred             HHHH-----------HHHHHHHHHhcCCcEEE
Confidence            3322           46788999999999763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.3e-07  Score=89.60  Aligned_cols=133  Identities=21%  Similarity=0.256  Sum_probs=102.9

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCC---CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cC-CCccE
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LE-RQFQL  233 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~---~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~-~~fD~  233 (343)
                      ...++.+|||++++.|.=+.++++...   ..|+++|.++.-++..++|+...|+.++.....|.....   .. .+||.
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence            347889999999999999999888732   246999999999999999999999988888888877543   22 35999


Q ss_pred             EEECcccccccc---CCCC-----h-------hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhhcc
Q 019324          234 VMDKGTLDAIGL---HPDG-----P-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRR  293 (343)
Q Consensus       234 V~~~~~l~~i~~---~~~~-----~-------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~  293 (343)
                      |+........+.   ||+-     .       .....+|..+.++|||||.|+.++|....++.-..+..|..+.
T Consensus       233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~  307 (355)
T COG0144         233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH  307 (355)
T ss_pred             EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence            998765544432   2322     1       1124788999999999999999999998888777776655443

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=2.6e-09  Score=85.73  Aligned_cols=79  Identities=22%  Similarity=0.293  Sum_probs=69.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      ..+++++|+|||.|.++...+..+...|+|+|++|.+++++.+|++...+ ++++.++|+.+..+ .+.||.++.|..+.
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPFG  125 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCCC
Confidence            56889999999999999887777777999999999999999999998876 78999999999865 57899999988765


Q ss_pred             c
Q 019324          242 A  242 (343)
Q Consensus       242 ~  242 (343)
                      .
T Consensus       126 T  126 (185)
T KOG3420|consen  126 T  126 (185)
T ss_pred             c
Confidence            3

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.85  E-value=1.4e-08  Score=92.12  Aligned_cols=105  Identities=19%  Similarity=0.290  Sum_probs=83.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+++.|||+|||+|.++...++.|+++|++++-| .|.+.|++..+.+.+ .+|.++.+.+.+..++++.|+||+-. +.
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEP-MG  253 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEP-MG  253 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEecc-ch
Confidence            5688999999999999999999999999999976 688999999888877 58999999999999999999999853 22


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .+.   .....++.+ -.+++.|||.|.++-+
T Consensus       254 ~mL---~NERMLEsY-l~Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  254 YML---VNERMLESY-LHARKWLKPNGKMFPT  281 (517)
T ss_pred             hhh---hhHHHHHHH-HHHHhhcCCCCcccCc
Confidence            221   111222222 3456999999988764

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.84  E-value=2.4e-08  Score=92.10  Aligned_cols=78  Identities=17%  Similarity=0.262  Sum_probs=67.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.+++++...+ ..+++++++|+.+... ..||+|++|..+.
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~VvaNlPY~  112 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVCVANVPYQ  112 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCEEEecCCcc
Confidence            567899999999999999999985 489999999999999999988765 3589999999988654 3689999987764


Q ss_pred             c
Q 019324          242 A  242 (343)
Q Consensus       242 ~  242 (343)
                      .
T Consensus       113 I  113 (294)
T PTZ00338        113 I  113 (294)
T ss_pred             c
Confidence            3

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.83  E-value=1.4e-08  Score=92.99  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=63.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCC-ccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~-fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++..   ++++++++|+.+.+++.. ++.|++|..+.
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~  116 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPYN  116 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCcc
Confidence            4678999999999999999999965 899999999999999987642   489999999998865432 58899887653

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.83  E-value=4.2e-08  Score=91.20  Aligned_cols=79  Identities=20%  Similarity=0.297  Sum_probs=60.8

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc-CCC-ceEEEE-ccCCCCc-----cCCCccEE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLV-DDVLDTK-----LERQFQLV  234 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~-~~~-~i~~~~-~D~~~~~-----~~~~fD~V  234 (343)
                      ++.+|||||||+|.+...++.. ...+++|+|+++.+++.|+++++.+ ++. ++.+.. .|.....     ..+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            4679999999999887777665 2238999999999999999999998 664 677754 3332211     24689999


Q ss_pred             EECccccc
Q 019324          235 MDKGTLDA  242 (343)
Q Consensus       235 ~~~~~l~~  242 (343)
                      +||..+..
T Consensus       194 vcNPPf~~  201 (321)
T PRK11727        194 LCNPPFHA  201 (321)
T ss_pred             EeCCCCcC
Confidence            99998754

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.83  E-value=4.2e-08  Score=91.62  Aligned_cols=160  Identities=18%  Similarity=0.264  Sum_probs=97.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--------CCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCcc---CC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL---ER  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--------g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~~---~~  229 (343)
                      .++.+|||.+||+|.++..+.+.        ....++|+|+++.++..|+.++...+..  +..+..+|......   ..
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~  124 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ  124 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            45678999999999999888762        2348999999999999999988776652  35688999776543   36


Q ss_pred             CccEEEECcccccccc-----C---------CCChhhHHHHHHHHhhccCCCcEEEEEecCCCh--HHHHHHHHhhhhcc
Q 019324          230 QFQLVMDKGTLDAIGL-----H---------PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK--DELVHEVSNLSQRR  293 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~-----~---------~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~--~~~~~~~~~~~~~~  293 (343)
                      .||+|+++.++.....     .         ......-..++..+.+.|++||++.+..+....  ......++++-...
T Consensus       125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~  204 (311)
T PF02384_consen  125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLEN  204 (311)
T ss_dssp             -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHH
T ss_pred             ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhh
Confidence            8999999987754411     0         011122245889999999999998887664321  11112222221111


Q ss_pred             ccccccchhhhhcccCCCCeeEecccccCCcccccCccCeeEeEEEEeeC
Q 019324          294 IGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN  343 (343)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~p~~~f~g~~g~~v~~v~f~r~  343 (343)
                                         . .+..+-.+|.-.|.+ .+..++.+.|.|+
T Consensus       205 -------------------~-~i~aVI~Lp~~~F~~-t~v~t~ilil~k~  233 (311)
T PF02384_consen  205 -------------------G-YIEAVISLPSNLFKP-TGVPTSILILNKK  233 (311)
T ss_dssp             -------------------E-EEEEEEE--TTSSSS-SSS-EEEEEEEES
T ss_pred             -------------------c-hhhEEeecccceecc-cCcCceEEEEeec
Confidence                               1 133333456666776 6677777777663

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PLN02823 spermine synthase

Probab=98.81  E-value=2.6e-08  Score=93.33  Aligned_cols=111  Identities=14%  Similarity=0.307  Sum_probs=82.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      ..+++||.||+|.|..+..+++. +..+|+.+|+++.+++.|++.+...+    .++++++.+|....-  ..++||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            35679999999999999998886 45589999999999999999875432    258999999988753  256899999


Q ss_pred             ECccccccccCCCChhhHHHHHH-HHhhccCCCcEEEEEe
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWD-SVSKLVAPGGLLVITS  274 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~-~~~~~LkpgG~lii~~  274 (343)
                      .... +-....+....-...+++ .+.+.|+|||++++..
T Consensus       182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            8631 211000111112345777 8999999999998854

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.80  E-value=2.6e-08  Score=91.16  Aligned_cols=105  Identities=16%  Similarity=0.253  Sum_probs=79.5

Q ss_pred             CCeEEEEccCccH----HHHHHHhc-C----CCcEEEEeCChHHHHHHHHHH------------------HH-----cC-
Q 019324          165 SWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSLA------------------NR-----DG-  211 (343)
Q Consensus       165 ~~~VLDiGcG~G~----~~~~la~~-g----~~~v~gvD~s~~~i~~a~~~~------------------~~-----~~-  211 (343)
                      ..+|+..||++|.    +++.+.+. +    .-+|+|+|+|+.+++.|++-.                  ..     .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4799999999994    44555443 1    127999999999999998741                  00     01 


Q ss_pred             ------C-CceEEEEccCCCCcc--CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          212 ------F-SCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       212 ------~-~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                            + ..|.|.+.|+.+.+.  .+.||+|+|.+++-++.     .....++++.+.+.|+|||+|++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-----~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-----KTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-----HHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                  1 258999999988542  57899999999987662     3566788999999999999988754

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.79  E-value=2.4e-08  Score=90.70  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=64.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.+++++..  .++++++++|+.+.+.+ .||.|++|-++.
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~-~~d~Vv~NlPy~  102 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP-EFNKVVSNLPYQ  102 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch-hceEEEEcCCcc
Confidence            467899999999999999999985 4899999999999999988754  25899999999987654 589999987764

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.77  E-value=9.3e-08  Score=87.83  Aligned_cols=73  Identities=15%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CC---CccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ER---QFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~---~fD~V~  235 (343)
                      .++..+||.+||.|..+..+++..  ..+|+|+|.++.|++.+++++..  ..++.++++|+.++..  ..   ++|.|+
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl   95 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGIL   95 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence            567799999999999999999883  34899999999999999998765  3589999999887642  22   799998


Q ss_pred             EC
Q 019324          236 DK  237 (343)
Q Consensus       236 ~~  237 (343)
                      ..
T Consensus        96 ~D   97 (296)
T PRK00050         96 LD   97 (296)
T ss_pred             EC
Confidence            75

>PRK04148 hypothetical protein; Provisional

Probab=98.76  E-value=1.8e-07  Score=75.52  Aligned_cols=67  Identities=24%  Similarity=0.469  Sum_probs=57.6

Q ss_pred             CCCeEEEEccCccH-HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~-~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~  238 (343)
                      ++.+|||||||.|. ++..|++.|+ +|+|+|+++.+++.++++       .++++++|+.+..+  -+.+|+|++..
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysir   85 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSIR   85 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence            45789999999995 8989998886 999999999999999874       46899999998765  37899999853

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.75  E-value=5.9e-08  Score=83.71  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=82.4

Q ss_pred             eEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCCCCcc---------CCCccEEE
Q 019324          167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL---------ERQFQLVM  235 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~~~~~---------~~~fD~V~  235 (343)
                      +|||||||||..+.+++.+ +.-.-.-.|+++......+......+++|+ .-+..|+.....         .++||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            5999999999999999987 333678899999998888887777776653 335667766521         35899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +.+++|...     ......+++.+.++|++||.|++-.+
T Consensus       108 ~~N~lHI~p-----~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen  108 CINMLHISP-----WSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             ehhHHHhcC-----HHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            999987653     46677899999999999999999654

The function of this family is unknown.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.73  E-value=1.3e-08  Score=90.06  Aligned_cols=133  Identities=17%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      ++++..|||+|.|||+++..|++.|. +|+|+++++.|+....++...... ..++++.+|+.+.+.+ .||++++|-.+
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P-~fd~cVsNlPy  133 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP-RFDGCVSNLPY  133 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-ccceeeccCCc
Confidence            37899999999999999999999975 899999999999999998876543 2699999999997654 79999987543


Q ss_pred             ccc-------ccCCCChhhHHHHHH-H-H-hhccCCCcEEEE-EecCCChHHHHHHHHhhhhccccc
Q 019324          241 DAI-------GLHPDGPLKRIMYWD-S-V-SKLVAPGGLLVI-TSCNSTKDELVHEVSNLSQRRIGV  296 (343)
Q Consensus       241 ~~i-------~~~~~~~~~~~~~l~-~-~-~~~LkpgG~lii-~~~~~~~~~~~~~~~~~~~~~~~~  296 (343)
                      ..-       ..|.+-+.....+++ + + .-+-+||-.+++ .+.+.+...-+..+.++.+..+..
T Consensus       134 qISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~i~KVgknnFrP  200 (315)
T KOG0820|consen  134 QISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTHIMKVGKNNFRP  200 (315)
T ss_pred             cccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchhheeecccccCC
Confidence            221       112221111111111 1 1 224467777776 334444444444454555544433

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.71  E-value=7.3e-08  Score=87.21  Aligned_cols=106  Identities=19%  Similarity=0.285  Sum_probs=81.5

Q ss_pred             CCCeEEEEccCcc----HHHHHHHhcC-----C-CcEEEEeCChHHHHHHHHHH-----H--------------H--cC-
Q 019324          164 SSWSVLDIGTGNG----LLLQELSKQG-----F-SDLTGVDYSEDAINLAQSLA-----N--------------R--DG-  211 (343)
Q Consensus       164 ~~~~VLDiGcG~G----~~~~~la~~g-----~-~~v~gvD~s~~~i~~a~~~~-----~--------------~--~~-  211 (343)
                      ...+|+-+||++|    .+++.|.+.+     . -+|+|+|+|..+++.|+.-.     .              .  .+ 
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            3779999999999    4555555542     1 28999999999999997521     0              0  01 


Q ss_pred             ------C-CceEEEEccCCCCc-cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          212 ------F-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       212 ------~-~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                            + ..|.|...|+.... ..+.||+|+|.+++-++.     ......+++.++..|+|||+|++-.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-----~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-----EETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-----HHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                  1 25889999999887 678899999999997772     2455678899999999999999953

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.70  E-value=5.1e-08  Score=92.71  Aligned_cols=98  Identities=16%  Similarity=0.239  Sum_probs=82.9

Q ss_pred             CCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l  240 (343)
                      +.+|||+.||+|..++.++.+  |..+|+++|+++.+++.+++|++.++..++.+++.|+.....  ...||+|.... +
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            358999999999999999987  667999999999999999999999988789999999887632  35799998754 2


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .          ....+++.+.+.+++||+++++
T Consensus       124 G----------s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       124 G----------TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             C----------CcHHHHHHHHHhcccCCEEEEE
Confidence            1          2235789999999999999997

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.69  E-value=1.4e-07  Score=89.47  Aligned_cols=58  Identities=29%  Similarity=0.436  Sum_probs=48.1

Q ss_pred             CeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC
Q 019324          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD  224 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~  224 (343)
                      .+|||+.||+|.++..|+... .+|+|+|+++.+++.|++|+..+++.|++|+.+++.+
T Consensus       198 ~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            389999999999999999984 5999999999999999999999999999999887654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.67  E-value=1.9e-07  Score=84.57  Aligned_cols=74  Identities=23%  Similarity=0.356  Sum_probs=62.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCcc---EEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ---LVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD---~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++.+. .|+++|+++.+++.++++...  .++++++.+|+...+.. .+|   +|++|-.
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-~~d~~~~vvsNlP  103 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-DFPKQLKVVSNLP  103 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-HcCCcceEEEcCC
Confidence            4578999999999999999999964 799999999999999987743  25899999999987654 466   7887755


Q ss_pred             c
Q 019324          240 L  240 (343)
Q Consensus       240 l  240 (343)
                      +
T Consensus       104 y  104 (253)
T TIGR00755       104 Y  104 (253)
T ss_pred             h
Confidence            4

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.65  E-value=1.3e-07  Score=85.19  Aligned_cols=109  Identities=19%  Similarity=0.263  Sum_probs=80.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCc--cCC-CccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LER-QFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~--~~~-~fD~V  234 (343)
                      ..+++||-||-|.|..+..+.++. ..++++||+++.+++.|++.+....    -++++++.+|....-  ..+ +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            458899999999999999999884 4589999999999999999765432    258999999987753  234 89999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +....- -.  .+....-...+++.+.++|+|||++++..
T Consensus       155 i~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTD-PD--GPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEESSS-TT--SCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCC-CC--CCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            975332 11  11111223578899999999999999854

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.1e-07  Score=81.33  Aligned_cols=113  Identities=17%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             cccccchhhhh-ccCCCCeEEEEccCccHHHHHHHhc-CCC--cEEEEeCChHHHHHHHHHHHHcC----------CCce
Q 019324          150 DLKSEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-GFS--DLTGVDYSEDAINLAQSLANRDG----------FSCI  215 (343)
Q Consensus       150 ~~~~~~~~~l~-~~~~~~~VLDiGcG~G~~~~~la~~-g~~--~v~gvD~s~~~i~~a~~~~~~~~----------~~~i  215 (343)
                      ++...+++.|. .+.++.+.||+|.|+|.++..++.. |..  ..+|||.-+..++.+++++...-          ..++
T Consensus        67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l  146 (237)
T KOG1661|consen   67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL  146 (237)
T ss_pred             HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence            34444444444 3478999999999999998888754 322  45999999999999999886543          1258


Q ss_pred             EEEEccCCCCcc-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          216 KFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       216 ~~~~~D~~~~~~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .++++|...... ..+||.|.+.....-+             .+++...|+|||.+++-..
T Consensus       147 ~ivvGDgr~g~~e~a~YDaIhvGAaa~~~-------------pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  147 SIVVGDGRKGYAEQAPYDAIHVGAAASEL-------------PQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             EEEeCCccccCCccCCcceEEEccCcccc-------------HHHHHHhhccCCeEEEeec
Confidence            899999998754 5799999997544322             3788889999999998644

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.63  E-value=2.6e-07  Score=76.25  Aligned_cols=106  Identities=24%  Similarity=0.359  Sum_probs=87.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCC--cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~--~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------~~~~fD~V  234 (343)
                      ..+..|||+|.|+|.++..++.+|..  .++++++|+..+....+..     +.++++.+|+.++.      ....||.|
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~v  121 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSV  121 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeE
Confidence            56789999999999999999999743  8999999999999998876     46778999988765      25789999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +|.-.+-.+.     .....++++.+...|.+||.++..+..+.
T Consensus       122 iS~lPll~~P-----~~~~iaile~~~~rl~~gg~lvqftYgp~  160 (194)
T COG3963         122 ISGLPLLNFP-----MHRRIAILESLLYRLPAGGPLVQFTYGPL  160 (194)
T ss_pred             EeccccccCc-----HHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence            9965554442     35667899999999999999998766643

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.63  E-value=2.1e-07  Score=84.97  Aligned_cols=107  Identities=21%  Similarity=0.331  Sum_probs=85.4

Q ss_pred             CCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCcc--CCCccEEEEC
Q 019324          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTKL--ERQFQLVMDK  237 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~~--~~~fD~V~~~  237 (343)
                      +++||-||-|.|..+..++++. ..+++.||+++..++.+++.+....    .++++++..|..++-.  ..+||+|+..
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D  156 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence            3699999999999999999984 4699999999999999999876554    4689999999887642  4589999986


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+=. .  .|-...-...+++.+.++|+++|+++..+
T Consensus       157 ~tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         157 STDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CCCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            4422 2  22222334578899999999999999973

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.62  E-value=4.2e-07  Score=77.98  Aligned_cols=107  Identities=20%  Similarity=0.278  Sum_probs=84.9

Q ss_pred             eEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccccccc
Q 019324          167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL  245 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~  245 (343)
                      +++|||+|.|.-++.++-. +..+++.+|....-+...+......+++|+++++..+.+......||+|++.++-     
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~-----  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA-----  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence            8999999999888887765 3348999999999999999999999999999999999984457899999998764     


Q ss_pred             CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          246 HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       246 ~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                            ....+++-+...|++||.+++.-.....+++..
T Consensus       126 ------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~  158 (184)
T PF02527_consen  126 ------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEE  158 (184)
T ss_dssp             ------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHT
T ss_pred             ------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHH
Confidence                  233567888999999999999876655555443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.59  E-value=2.9e-07  Score=81.66  Aligned_cols=89  Identities=16%  Similarity=0.211  Sum_probs=59.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHH-HHHHHHHcCCCce-EEEEccCCCCcc-C-----CCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL-AQSLANRDGFSCI-KFLVDDVLDTKL-E-----RQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~-a~~~~~~~~~~~i-~~~~~D~~~~~~-~-----~~fD~V  234 (343)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+++.++.. .+++      +++ .+...|+..... +     ..+|++
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~------~~v~~~~~~ni~~~~~~~~~~d~~~~Dvs  147 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD------ERVKVLERTNIRYVTPADIFPDFATFDVS  147 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC------CCeeEeecCCcccCCHhHcCCCceeeeEE
Confidence            4577999999999999999999987799999999988775 3322      122 233344443221 1     234544


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +..               ...++..+.++|+| |.+++.
T Consensus       148 fiS---------------~~~~l~~i~~~l~~-~~~~~L  170 (228)
T TIGR00478       148 FIS---------------LISILPELDLLLNP-NDLTLL  170 (228)
T ss_pred             Eee---------------hHhHHHHHHHHhCc-CeEEEE
Confidence            432               12356899999999 766654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.59  E-value=7.5e-08  Score=80.54  Aligned_cols=116  Identities=19%  Similarity=0.277  Sum_probs=71.9

Q ss_pred             eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccC----CCccEEEECcccc
Q 019324          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE----RQFQLVMDKGTLD  241 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~----~~fD~V~~~~~l~  241 (343)
                      .|+|+.||.|..++.+++. +.+|+++|+++..++.|+.|++..|+ .+|+++++|+.+....    ..+|+|++..+-.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG   80 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG   80 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence            6999999999999999999 45899999999999999999999997 5899999999876421    1289999864322


Q ss_pred             ---cc-----cc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHH
Q 019324          242 ---AI-----GL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  285 (343)
Q Consensus       242 ---~i-----~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~  285 (343)
                         +.     .+ ....+.....+++.+.++ .+. ++++...+....++.+.
T Consensus        81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~n-v~l~LPRn~dl~ql~~~  131 (163)
T PF09445_consen   81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TPN-VVLFLPRNSDLNQLSQL  131 (163)
T ss_dssp             SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S--EEEEEETTB-HHHHHHT
T ss_pred             CccccccCccCHHHccCCCCHHHHHHHHHhh-CCC-EEEEeCCCCCHHHHHHH
Confidence               11     11 111222344555554444 333 44555556666666443

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.57  E-value=1.6e-07  Score=80.78  Aligned_cols=101  Identities=15%  Similarity=0.263  Sum_probs=63.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++..|.|+|||.+.++..+.. +. .|..+|+-..               +-.+..+|+...++ +++.|++++.-.|.
T Consensus        71 ~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSLM  133 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSLM  133 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH--S-----EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES---
T ss_pred             CCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhhh
Confidence            4567999999999999977643 33 7999998532               33478899998886 68999999754443


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh---HHHHHHHHh
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK---DELVHEVSN  288 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~---~~~~~~~~~  288 (343)
                      .        .+...++.++.|+|||||.|.|.......   ....+.+..
T Consensus       134 G--------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~  175 (219)
T PF05148_consen  134 G--------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKK  175 (219)
T ss_dssp             S--------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHC
T ss_pred             C--------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHH
Confidence            2        35667899999999999999997655433   444444443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.56  E-value=8.2e-08  Score=83.29  Aligned_cols=112  Identities=19%  Similarity=0.246  Sum_probs=87.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--CceEEEEccCCCCc---cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTK---LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~~i~~~~~D~~~~~---~~~~fD~V~~~  237 (343)
                      .++.+|||.+.|-|..++..+++|+..|+.++.+++.++.|+-|-=..++  .+++++.+|+.+.-   .+.+||+|+-.
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD  212 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD  212 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence            56899999999999999999999988999999999999999876433333  25899999987753   26789999965


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ..--.+    .+....+.+.++++|+|||||.++--+.++.
T Consensus       213 PPRfS~----AgeLYseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         213 PPRFSL----AGELYSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             CCccch----hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            432111    1234556788999999999999998766654

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.54  E-value=4.6e-08  Score=84.53  Aligned_cols=113  Identities=20%  Similarity=0.189  Sum_probs=87.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      +....++|||||.|.+...+...+..+++-+|-|-.|++.++..- ..++ .+..+++|-..+++ ++++|+|++.-.++
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH  148 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH  148 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence            345689999999999999999998889999999999999998632 2232 46677888777765 68999999998888


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHH
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVH  284 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~  284 (343)
                      ++.       +.-..+.++...|||+|.++-+-... +..++.-
T Consensus       149 W~N-------dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~  185 (325)
T KOG2940|consen  149 WTN-------DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC  185 (325)
T ss_pred             hhc-------cCchHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence            873       44456688999999999998754433 3444433

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.54  E-value=6.9e-07  Score=88.70  Aligned_cols=116  Identities=13%  Similarity=0.022  Sum_probs=88.3

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECcc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  239 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~  239 (343)
                      ....+||||||.|.++..+|.. +...++|+|+....+..+.+.....++.|+.+++.|+....   .++++|.|+.+++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            4678999999999999999987 44489999999999999988888888889999988875332   3578998888655


Q ss_pred             cccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          240 LDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       240 l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      =-+.-- |.....--..+++.+.++|||||.+.+.+-+...
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y  467 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY  467 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence            333210 1111222247889999999999999998766543

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.53  E-value=4e-07  Score=83.75  Aligned_cols=129  Identities=20%  Similarity=0.247  Sum_probs=99.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~  237 (343)
                      .++.+|||+++|.|.-+..+++.  +...++++|+++.-+...+.++...|+.++.....|.....   ....||.|+..
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD  163 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD  163 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence            67889999999999999888886  23489999999999999999999999989999888887763   24469999986


Q ss_pred             cccccc---ccCCCCh------------hhHHHHHHHHhhcc----CCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324          238 GTLDAI---GLHPDGP------------LKRIMYWDSVSKLV----APGGLLVITSCNSTKDELVHEVSNLSQ  291 (343)
Q Consensus       238 ~~l~~i---~~~~~~~------------~~~~~~l~~~~~~L----kpgG~lii~~~~~~~~~~~~~~~~~~~  291 (343)
                      ......   .-+|+..            .....+|+++.+.+    ||||+++.++|.-..++.-..++.|-.
T Consensus       164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~  236 (283)
T PF01189_consen  164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLK  236 (283)
T ss_dssp             CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHH
T ss_pred             CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHH
Confidence            544333   2233210            11247889999999    999999999998887776666665543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.51  E-value=1.2e-06  Score=82.23  Aligned_cols=115  Identities=20%  Similarity=0.207  Sum_probs=86.0

Q ss_pred             hccCCCCeEEEEccCccHHHHHHHhcCC------C----------------------------------cEEEEeCChHH
Q 019324          160 DKYLSSWSVLDIGTGNGLLLQELSKQGF------S----------------------------------DLTGVDYSEDA  199 (343)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~------~----------------------------------~v~gvD~s~~~  199 (343)
                      .+..++..++|.-||+|.+++..+..+.      .                                  .++|+|+++.+
T Consensus       187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~  266 (381)
T COG0116         187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH  266 (381)
T ss_pred             cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence            3446667999999999999998887642      1                                  27799999999


Q ss_pred             HHHHHHHHHHcCCC-ceEEEEccCCCCccC-CCccEEEECccccccccCCCC-hh-hHHHHHHHHhhccCCCcEEEEEec
Q 019324          200 INLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPDG-PL-KRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       200 i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~-~~fD~V~~~~~l~~i~~~~~~-~~-~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++.|+.|+...|+. .|+|.++|+..+..+ +.+|+||||.+..-= +.... .. ....+.+.+.+.++-.+.+++++.
T Consensus       267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~  345 (381)
T COG0116         267 IEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS  345 (381)
T ss_pred             HHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            99999999999984 699999999998765 899999999876422 11111 11 122444556677777778877654

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.50  E-value=8.7e-07  Score=78.09  Aligned_cols=92  Identities=16%  Similarity=0.284  Sum_probs=70.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      ..+..|.|+|||.+.++.   .. ...|+.+|+-+.               +-+++.+|+.+.++ +++.|++++.-.+ 
T Consensus       179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLSL-  238 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLSL-  238 (325)
T ss_pred             cCceEEEecccchhhhhh---cc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHhh-
Confidence            457799999999998876   22 348999998422               56789999999886 7899999874333 


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                       ++      .+...++.+++|+|++||.++|.........
T Consensus       239 -Mg------tn~~df~kEa~RiLk~gG~l~IAEv~SRf~d  271 (325)
T KOG3045|consen  239 -MG------TNLADFIKEANRILKPGGLLYIAEVKSRFSD  271 (325)
T ss_pred             -hc------ccHHHHHHHHHHHhccCceEEEEehhhhccc
Confidence             32      4566789999999999999999776654433

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=4.3e-07  Score=81.42  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=67.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC--CccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER--QFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~--~fD~V~~~~~l  240 (343)
                      .++..|||||+|.|.++..|++.+. .|+++++++.++...++.....  .+++++.+|+.+.+++.  .++.|++|-.+
T Consensus        29 ~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~--~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY  105 (259)
T COG0030          29 SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY--DNLTVINGDALKFDFPSLAQPYKVVANLPY  105 (259)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc--cceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence            4578999999999999999999975 8999999999999999987632  48999999999998765  78999998766


Q ss_pred             cc
Q 019324          241 DA  242 (343)
Q Consensus       241 ~~  242 (343)
                      ..
T Consensus       106 ~I  107 (259)
T COG0030         106 NI  107 (259)
T ss_pred             cc
Confidence            43

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.47  E-value=3.1e-07  Score=78.84  Aligned_cols=113  Identities=24%  Similarity=0.355  Sum_probs=70.7

Q ss_pred             CCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cC---CC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LE---RQ  230 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~---~~  230 (343)
                      ++.+|||+||++|.++..+++++  ...|+|+|+.+.           ...+++.++++|+.+..        ..   +.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence            45899999999999999999996  459999999877           12246777777765531        11   58


Q ss_pred             ccEEEECccccccccCC-CC---hhhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHHHHH
Q 019324          231 FQLVMDKGTLDAIGLHP-DG---PLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS  287 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~-~~---~~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~~~~  287 (343)
                      +|+|++......-.... +.   .......+.-+.+.|+|||.+++-.... ....+...+.
T Consensus        92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~  153 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLK  153 (181)
T ss_dssp             ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHH
T ss_pred             cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHH
Confidence            99999987433221100 01   1222344455678899999988855443 3346666665

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.46  E-value=2.9e-07  Score=82.47  Aligned_cols=99  Identities=19%  Similarity=0.258  Sum_probs=79.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      ..+..+||+|||+|..+..-   +...++|+|++...+..+++       .+. ....+|+...+. +.+||.+++..++
T Consensus        44 ~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~-------~~~~~~~~ad~l~~p~~~~s~d~~lsiavi  113 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKR-------SGGDNVCRADALKLPFREESFDAALSIAVI  113 (293)
T ss_pred             CCcceeeecccCCcccCcCC---Ccceeeecchhhhhcccccc-------CCCceeehhhhhcCCCCCCccccchhhhhh
Confidence            44789999999999765322   22379999999999998886       244 688899999876 6899999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +|+.    ....+...++++.++|+|||..++...
T Consensus       114 hhls----T~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  114 HHLS----TRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             hhhh----hHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            9883    456677899999999999999877544

>PRK00536 speE spermidine synthase; Provisional

Probab=98.46  E-value=1.6e-06  Score=78.38  Aligned_cols=98  Identities=15%  Similarity=0.126  Sum_probs=75.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH----cCCCceEEEEccCCCCccCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR----DGFSCIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~----~~~~~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      ..+++||-||.|.|..+..++++. .+|+.||+++.+++.+++.+..    ...++++++.. +.+ ...++||+|+...
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence            567999999999999999999996 4999999999999999994433    22257777652 221 1236899999864


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++.            ..+.+.+.+.|+|||+++....
T Consensus       148 ~~~------------~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        148 EPD------------IHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             CCC------------hHHHHHHHHhcCCCcEEEECCC
Confidence            321            2466899999999999999543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.45  E-value=1.6e-06  Score=89.41  Aligned_cols=113  Identities=26%  Similarity=0.225  Sum_probs=82.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc------C-------------------------------------CCcEEEEeCChHH
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ------G-------------------------------------FSDLTGVDYSEDA  199 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~------g-------------------------------------~~~v~gvD~s~~~  199 (343)
                      .++..++|.+||+|.+++..+..      |                                     ...++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            45789999999999999887652      0                                     0159999999999


Q ss_pred             HHHHHHHHHHcCCC-ceEEEEccCCCCcc---CCCccEEEECccccccccCCCChhhHHHHHHHH---hhccCCCcEEEE
Q 019324          200 INLAQSLANRDGFS-CIKFLVDDVLDTKL---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSV---SKLVAPGGLLVI  272 (343)
Q Consensus       200 i~~a~~~~~~~~~~-~i~~~~~D~~~~~~---~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~---~~~LkpgG~lii  272 (343)
                      ++.|++|+...|+. .+.+.++|+.+...   .++||+|++|..+..-.   ....+...+...+   .+...+|+.+++
T Consensus       269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~---~~~~~l~~lY~~lg~~lk~~~~g~~~~l  345 (702)
T PRK11783        269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERL---GEEPALIALYSQLGRRLKQQFGGWNAAL  345 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCcc---CchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            99999999999985 58999999988754   24699999998764321   1112333333443   444448999888


Q ss_pred             EecCCC
Q 019324          273 TSCNST  278 (343)
Q Consensus       273 ~~~~~~  278 (343)
                      .+....
T Consensus       346 lt~~~~  351 (702)
T PRK11783        346 FSSSPE  351 (702)
T ss_pred             EeCCHH
Confidence            776553

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=3.4e-07  Score=88.02  Aligned_cols=90  Identities=23%  Similarity=0.300  Sum_probs=71.6

Q ss_pred             hhhccccCcccCccccccccchhhhh---ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC
Q 019324          135 LCISISQGHMLNHVEDLKSEPVEEND---KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (343)
Q Consensus       135 ~~~~l~~~~~~~~~~~~~~~~~~~l~---~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~  211 (343)
                      +...+.++..+......-+.+-..+.   .+..+..+||+.||||.++..+++. ...|+|+++++.++..|++|+..+|
T Consensus       351 ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ng  429 (534)
T KOG2187|consen  351 LTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQING  429 (534)
T ss_pred             eEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcC
Confidence            33455566666666665555555543   3366789999999999999999987 6799999999999999999999999


Q ss_pred             CCceEEEEccCCCC
Q 019324          212 FSCIKFLVDDVLDT  225 (343)
Q Consensus       212 ~~~i~~~~~D~~~~  225 (343)
                      ++|++|+++-+.+.
T Consensus       430 isNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  430 ISNATFIVGQAEDL  443 (534)
T ss_pred             ccceeeeecchhhc
Confidence            99999999955543

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.40  E-value=4e-07  Score=78.35  Aligned_cols=74  Identities=22%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccC-----CCccEEEEC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-----RQFQLVMDK  237 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~-----~~fD~V~~~  237 (343)
                      ....|+|..||.|..++..+.++. .|+++|++|.-|..|+.|++-.|++ +|+|+++|+.+....     ..+|+|+..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            356899999999999999999875 8999999999999999999999995 799999999876321     235566655


Q ss_pred             c
Q 019324          238 G  238 (343)
Q Consensus       238 ~  238 (343)
                      +
T Consensus       173 p  173 (263)
T KOG2730|consen  173 P  173 (263)
T ss_pred             C
Confidence            4

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.39  E-value=1.6e-06  Score=78.51  Aligned_cols=103  Identities=24%  Similarity=0.335  Sum_probs=77.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH---cC----------------------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR---DG----------------------------  211 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~---~~----------------------------  211 (343)
                      ..+.+||-.|||.|+++..++..|+ .+.|.|+|--|+-...-.+..   .+                            
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            4467999999999999999999998 899999999997655442221   00                            


Q ss_pred             ---------CCceEEEEccCCCCcc-C---CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          212 ---------FSCIKFLVDDVLDTKL-E---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       212 ---------~~~i~~~~~D~~~~~~-~---~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                               ..++....+|+.+.-. +   ++||+|+...-+|.       ......+++.|.++|||||+.+=.
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT-------A~Ni~~Yi~tI~~lLkpgG~WIN~  201 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT-------AENIIEYIETIEHLLKPGGYWINF  201 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec-------hHHHHHHHHHHHHHhccCCEEEec
Confidence                     0246666777776543 2   58999998755544       377889999999999999966543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.37  E-value=1.4e-06  Score=73.87  Aligned_cols=104  Identities=18%  Similarity=0.227  Sum_probs=81.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ..+++|||+|+|+|..++..+..|...|++.|+.|..+...+-|.+.+++ ++.+...|+..  .+..||+++...++..
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~LagDlfy~  154 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLLLAGDLFYN  154 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCcceeEEEeeceecC
Confidence            55889999999999999999999988999999999999999999999997 89999999887  4568999998776532


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEE-EecCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVI-TSCNS  277 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii-~~~~~  277 (343)
                      =       ....+++. ....|+..|..++ -++.+
T Consensus       155 ~-------~~a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         155 H-------TEADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             c-------hHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence            1       23345556 5555555555444 44444

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.36  E-value=2.5e-06  Score=85.44  Aligned_cols=114  Identities=16%  Similarity=0.177  Sum_probs=78.8

Q ss_pred             CCCeEEEEccCccHHHHHHHhcC--------C-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------cC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQG--------F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LE  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g--------~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------~~  228 (343)
                      ...+|||.|||+|.++..++...        . ..++|+|+++.++..++.++...+.-.+.+.+.|.....      ..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            45699999999999999887641        1 368999999999999999887765224555655544321      13


Q ss_pred             CCccEEEECccccccccCCC--------------------------------------C-hhhHHH-HHHHHhhccCCCc
Q 019324          229 RQFQLVMDKGTLDAIGLHPD--------------------------------------G-PLKRIM-YWDSVSKLVAPGG  268 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~--------------------------------------~-~~~~~~-~l~~~~~~LkpgG  268 (343)
                      +.||+|+.|.++..+.....                                      + ...... +++.+.++|++||
T Consensus       111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G  190 (524)
T TIGR02987       111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG  190 (524)
T ss_pred             CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence            58999999988754421100                                      0 001112 3467899999999


Q ss_pred             EEEEEecCC
Q 019324          269 LLVITSCNS  277 (343)
Q Consensus       269 ~lii~~~~~  277 (343)
                      ++.+..+..
T Consensus       191 ~~~~I~P~s  199 (524)
T TIGR02987       191 YVSIISPAS  199 (524)
T ss_pred             EEEEEEChH
Confidence            999987754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.33  E-value=2.4e-06  Score=74.62  Aligned_cols=102  Identities=18%  Similarity=0.251  Sum_probs=64.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHH-------HHcCC--CceEEEEccCCCCcc----C
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA-------NRDGF--SCIKFLVDDVLDTKL----E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~-------~~~~~--~~i~~~~~D~~~~~~----~  228 (343)
                      .++...+|||||.|+.....+.. ++.+.+||++.+...+.|+...       ...|.  .++++..+|+.+.+.    -
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~  120 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW  120 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence            56889999999999998777654 7767999999999888876533       23333  368889999887542    1


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      ...|+|++|+..  +      ..+....+.++...||+|-+++.
T Consensus       121 s~AdvVf~Nn~~--F------~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  121 SDADVVFVNNTC--F------DPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             HC-SEEEE--TT--T-------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             cCCCEEEEeccc--c------CHHHHHHHHHHHhcCCCCCEEEE
Confidence            357999998764  2      13444555777788899987765

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.33  E-value=4.3e-06  Score=72.79  Aligned_cols=108  Identities=17%  Similarity=0.291  Sum_probs=83.6

Q ss_pred             hhhhhccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc------
Q 019324          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK------  226 (343)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~------  226 (343)
                      +.++-+...++++||||.=||..+..+|..  .-.+|+++|+++...+.+.+..+..|+. +|++++++..+.-      
T Consensus        65 l~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~  144 (237)
T KOG1663|consen   65 LQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD  144 (237)
T ss_pred             HHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc
Confidence            344445577899999999888877777665  2238999999999999999988888874 7999999887642      


Q ss_pred             -cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          227 -LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       227 -~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                       ..+.||+++..         .++... ..+++++.++||+||++++.
T Consensus       145 ~~~~tfDfaFvD---------adK~nY-~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  145 GESGTFDFAFVD---------ADKDNY-SNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             CCCCceeEEEEc---------cchHHH-HHHHHHHHhhcccccEEEEe
Confidence             14688888852         233233 37889999999999999994

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.30  E-value=1.4e-06  Score=78.36  Aligned_cols=112  Identities=20%  Similarity=0.281  Sum_probs=76.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC----------------------------Cc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----------------------------SC  214 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~----------------------------~~  214 (343)
                      .++.++||||||.-......+..-+.+|+..|+++..++..++.+...+.                            ..
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            45779999999996554333333456899999999999988876543220                            01


Q ss_pred             e-EEEEccCCCCcc-------CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          215 I-KFLVDDVLDTKL-------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       215 i-~~~~~D~~~~~~-------~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      | .++.+|+++..+       +.+||+|++..+++.+.   .........++++.++|||||.|++...-.
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~---~d~~~y~~al~ni~~lLkpGG~Lil~~~l~  202 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC---KDLDEYRRALRNISSLLKPGGHLILAGVLG  202 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH----SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc---CCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence            3 477889988653       23599999999998884   334566788899999999999999975433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.29  E-value=3.7e-06  Score=73.57  Aligned_cols=106  Identities=18%  Similarity=0.218  Sum_probs=84.7

Q ss_pred             CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCC-ccEEEECccccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTLDA  242 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~-fD~V~~~~~l~~  242 (343)
                      +.+++|||+|.|.-++.|+-. +..+|+-+|....-+...++.....+++|++++++.+.+...... ||+|++.++.  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva--  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA--  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence            689999999999998888733 333799999999999999999999999999999999999865444 9999998653  


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                               ....+.+-+..++|+||.+++.-.....++
T Consensus       146 ---------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e  175 (215)
T COG0357         146 ---------SLNVLLELCLPLLKVGGGFLAYKGLAGKDE  175 (215)
T ss_pred             ---------chHHHHHHHHHhcccCCcchhhhHHhhhhh
Confidence                     233556778889999998876544443333

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.26  E-value=2e-06  Score=81.28  Aligned_cols=107  Identities=20%  Similarity=0.255  Sum_probs=89.0

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      ...+..+++|+|||.|.....++..+...++|+|+++..+..+........+. +..+..+|+.+.++ ++.||.+.+..
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld  186 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE  186 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence            44556689999999999999999886569999999999998888776665553 46678889888865 78999999988


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +..|.       .....++++++++++|||.++...
T Consensus       187 ~~~~~-------~~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  187 VVCHA-------PDLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             ecccC-------CcHHHHHHHHhcccCCCceEEeHH
Confidence            88777       466778899999999999998853

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=1e-05  Score=70.01  Aligned_cols=115  Identities=18%  Similarity=0.256  Sum_probs=80.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---------CCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------~~~f  231 (343)
                      .++.+|+||||-.|.++..+++. +. ..|+|+|+.|-.           ..+++.++++|++....         ...+
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~  112 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGAPV  112 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence            66899999999999999999988 32 259999997641           22579999999998642         2346


Q ss_pred             cEEEECcccccccc----CCCChhhHHHHHHHHhhccCCCcEEEEEe-cCCChHHHHHHHHh
Q 019324          232 QLVMDKGTLDAIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEVSN  288 (343)
Q Consensus       232 D~V~~~~~l~~i~~----~~~~~~~~~~~l~~~~~~LkpgG~lii~~-~~~~~~~~~~~~~~  288 (343)
                      |+|++...-..-..    |..........++-+..+|+|||.+++-. .....+.++..+++
T Consensus       113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~  174 (205)
T COG0293         113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR  174 (205)
T ss_pred             ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence            99998643311111    11112223455677788999999999954 45566777777763

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.23  E-value=1.6e-06  Score=72.86  Aligned_cols=101  Identities=16%  Similarity=0.191  Sum_probs=82.1

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~  244 (343)
                      ...+.|+|+|+|.++...++. +.+|++++.+|.-.+.|++|+...|..|++++.+|+....+ ...|+|+|-. ++...
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEm-lDTaL  109 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEM-LDTAL  109 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHH-hhHHh
Confidence            468999999999999999887 66999999999999999999988888899999999999877 5789999842 33221


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      +    .+....+++.+.+.||-++.++-
T Consensus       110 i----~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         110 I----EEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             h----cccccHHHHHHHHHhhcCCcccc
Confidence            1    12334567888889999988764

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.22  E-value=1.1e-05  Score=74.63  Aligned_cols=140  Identities=23%  Similarity=0.276  Sum_probs=98.5

Q ss_pred             HHHhhhhhccccCcccCcccc---ccccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHH
Q 019324          130 SWTKSLCISISQGHMLNHVED---LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQS  205 (343)
Q Consensus       130 ~w~~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~  205 (343)
                      +|-+.+...++-+.-+.+.++   ++.++...++....-.+||-+|.|.|.-+..+.+.+ ..+++-+|++|.|++.+++
T Consensus       252 r~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~  331 (508)
T COG4262         252 RRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASH  331 (508)
T ss_pred             EecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhh
Confidence            344444444444555555554   455555556666777899999999999999999985 6799999999999999995


Q ss_pred             HHHH--cC-----CCceEEEEccCCCCcc--CCCccEEEECccccccccCCCCh----hhHHHHHHHHhhccCCCcEEEE
Q 019324          206 LANR--DG-----FSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       206 ~~~~--~~-----~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~~~~~~~----~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      +...  .+     .++++++..|+.++-.  .+.||+||..-    .  +|..+    ..-..+...+.+.|+++|++++
T Consensus       332 ~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl----~--DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv  405 (508)
T COG4262         332 ATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL----P--DPSTPSIGRLYSVEFYRLLSRHLAETGLMVV  405 (508)
T ss_pred             hhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC----C--CCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence            4321  11     1579999999988743  46899998632    1  23322    2224677888999999999999


Q ss_pred             Eec
Q 019324          273 TSC  275 (343)
Q Consensus       273 ~~~  275 (343)
                      ...
T Consensus       406 Qag  408 (508)
T COG4262         406 QAG  408 (508)
T ss_pred             ecC
Confidence            543

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.21  E-value=3.1e-05  Score=72.16  Aligned_cols=107  Identities=14%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc----C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEE--EEccCCCCc-------cC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF--LVDDVLDTK-------LE  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~--~~~D~~~~~-------~~  228 (343)
                      .++..|+|+|||+|.-+..|++.    + ...++++|+|..+++.+.+++.....+.+.+  +++|..+..       ..
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence            44668999999999866655443    2 2379999999999999999887444455544  888876531       12


Q ss_pred             CCccEEEECc-cccccccCCCChhhHHHHHHHHhh-ccCCCcEEEEEe
Q 019324          229 RQFQLVMDKG-TLDAIGLHPDGPLKRIMYWDSVSK-LVAPGGLLVITS  274 (343)
Q Consensus       229 ~~fD~V~~~~-~l~~i~~~~~~~~~~~~~l~~~~~-~LkpgG~lii~~  274 (343)
                      ....+++..+ ++..     ..+.....+|+++.+ .|+|||.+++..
T Consensus       155 ~~~r~~~flGSsiGN-----f~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       155 SRPTTILWLGSSIGN-----FSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             CCccEEEEeCccccC-----CCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence            3456777654 4433     345778899999999 999999999853

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.21  E-value=2e-05  Score=63.97  Aligned_cols=102  Identities=31%  Similarity=0.483  Sum_probs=70.7

Q ss_pred             EEEEccCccHHHHHHHhcCC--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC--CccC--CCccEEEECcccc
Q 019324          168 VLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--TKLE--RQFQLVMDKGTLD  241 (343)
Q Consensus       168 VLDiGcG~G~~~~~la~~g~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~--~~~~--~~fD~V~~~~~l~  241 (343)
                      ++|+|||+|... .+.....  ..++|+|+++.++..++......+...+.+...|...  .+..  ..||++......+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            999999999976 3333321  2799999999999996655433211116888888776  4444  3799994433333


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +.       . ....+.++.+.|+|+|.+++......
T Consensus       131 ~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         131 LL-------P-PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             cC-------C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            32       1 45678999999999999999766554

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.20  E-value=1.1e-06  Score=84.72  Aligned_cols=97  Identities=21%  Similarity=0.286  Sum_probs=66.0

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEE-----eCChHHHHHHHHHHHHcCCCceEEEEcc--CCCCc-cCCCccEEEE
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGV-----DYSEDAINLAQSLANRDGFSCIKFLVDD--VLDTK-LERQFQLVMD  236 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gv-----D~s~~~i~~a~~~~~~~~~~~i~~~~~D--~~~~~-~~~~fD~V~~  236 (343)
                      -..+||+|||+|.++..|.+++.   +.+     |..+..++.|.++    |++   .+.+-  -..++ +++.||+|.|
T Consensus       118 iR~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~~qvqfaleR----Gvp---a~~~~~~s~rLPfp~~~fDmvHc  187 (506)
T PF03141_consen  118 IRTALDVGCGVASFGAYLLERNV---TTMSFAPNDEHEAQVQFALER----GVP---AMIGVLGSQRLPFPSNAFDMVHC  187 (506)
T ss_pred             eEEEEeccceeehhHHHHhhCCc---eEEEcccccCCchhhhhhhhc----Ccc---hhhhhhccccccCCccchhhhhc
Confidence            35889999999999999999853   333     4444566666543    332   22222  12334 3789999999


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..++...  ++.+    ..+|-++-|+|+|||+++.+.+..
T Consensus       188 src~i~W--~~~~----g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  188 SRCLIPW--HPND----GFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             ccccccc--hhcc----cceeehhhhhhccCceEEecCCcc
Confidence            8876332  3332    247789999999999999987653

; GO: 0008168 methyltransferase activity

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.19  E-value=2.6e-05  Score=68.15  Aligned_cols=112  Identities=21%  Similarity=0.221  Sum_probs=79.2

Q ss_pred             EEEEccCccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc-cCCCccEEEECccccccc
Q 019324          168 VLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       168 VLDiGcG~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~~i~  244 (343)
                      |+||||-.|.+...|++.|.. +++++|+++..++.|+++....++ .++++..+|..+.- ..+..|+|+..|+     
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM-----   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM-----   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC-----
Confidence            689999999999999999754 899999999999999999999987 47999999976643 3333788876442     


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                          +......++++....++....|++ .|+.....+.+.+...
T Consensus        76 ----GG~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~~~  115 (205)
T PF04816_consen   76 ----GGELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLYEN  115 (205)
T ss_dssp             -----HHHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHHHT
T ss_pred             ----CHHHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHHHC
Confidence                123455677888777776666655 4667777787777643

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.18  E-value=1.2e-05  Score=74.29  Aligned_cols=103  Identities=15%  Similarity=0.257  Sum_probs=84.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ..-...+|+|.|.|+.+..+... +..|-+++++...+..++..+. .   .|+.+-+|..+..+  +-|+|+...++++
T Consensus       176 ~~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~~P--~~daI~mkWiLhd  248 (342)
T KOG3178|consen  176 KGVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQDTP--KGDAIWMKWILHD  248 (342)
T ss_pred             ccCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C---CcceecccccccCC--CcCeEEEEeeccc
Confidence            34578999999999999999985 6689999999888888877664 3   47888899888733  4569999888776


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .     ..++..++|+++++.|+|||.+++.....
T Consensus       249 w-----tDedcvkiLknC~~sL~~~GkIiv~E~V~  278 (342)
T KOG3178|consen  249 W-----TDEDCVKILKNCKKSLPPGGKIIVVENVT  278 (342)
T ss_pred             C-----ChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            6     36788999999999999999999976633

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.16  E-value=3.5e-05  Score=71.10  Aligned_cols=74  Identities=16%  Similarity=0.145  Sum_probs=60.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------CCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------~~~fD~V~  235 (343)
                      .++..++|.-||.|..+..+++. +..+|+|+|.++.+++.+++++...+ .++.+++++..++..      ..++|.|+
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl   97 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGIL   97 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence            56789999999999999999986 33589999999999999999887654 479999998876531      24688888


Q ss_pred             EC
Q 019324          236 DK  237 (343)
Q Consensus       236 ~~  237 (343)
                      .+
T Consensus        98 ~D   99 (305)
T TIGR00006        98 VD   99 (305)
T ss_pred             Ee
Confidence            65

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.05  E-value=6.9e-05  Score=70.67  Aligned_cols=124  Identities=17%  Similarity=0.137  Sum_probs=95.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~  237 (343)
                      .++.+|||+++..|.=+.++|..  +-..|+|.|.+..-+...+.|+...|+.+.-....|..+++   +.++||-|+..
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLD  319 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLD  319 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeeec
Confidence            67899999999999877777664  23379999999999999999999999988888888988764   34589999987


Q ss_pred             ccccc--cccCCCC-------------hhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324          238 GTLDA--IGLHPDG-------------PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       238 ~~l~~--i~~~~~~-------------~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~  286 (343)
                      .....  +...+..             .....++|..+..++++||+|+.++|.-..++.-..+
T Consensus       320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV  383 (460)
T KOG1122|consen  320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVV  383 (460)
T ss_pred             CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHH
Confidence            66555  2111110             1112367788999999999999999988766654444

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.02  E-value=8e-07  Score=75.81  Aligned_cols=94  Identities=15%  Similarity=0.310  Sum_probs=71.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~~~~l~  241 (343)
                      ..+.++||+|+|.|.++..++.. +.+|++++.|..|+...++.       +.+++  ...++. -+-+||+|.|.++++
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk-------~ynVl--~~~ew~~t~~k~dli~clNlLD  180 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK-------NYNVL--TEIEWLQTDVKLDLILCLNLLD  180 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc-------CCcee--eehhhhhcCceeehHHHHHHHH
Confidence            34689999999999999999887 66899999999999988863       22221  111111 134799999988887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCC-CcEEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAP-GGLLVIT  273 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~Lkp-gG~lii~  273 (343)
                      --       .+..++++.+..+|+| +|++++.
T Consensus       181 Rc-------~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  181 RC-------FDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             hh-------cChHHHHHHHHHHhccCCCcEEEE
Confidence            65       3566789999999999 8888774

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.00  E-value=2.6e-05  Score=67.69  Aligned_cols=91  Identities=20%  Similarity=0.289  Sum_probs=68.9

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~~~~l  240 (343)
                      ..++|||||=+......  ..+.-.|+.||+.+.               .-.+.+.|+.+.+.    .+.||+|.+.-++
T Consensus        52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL  114 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVL  114 (219)
T ss_pred             cceEEeecccCCCCccc--ccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence            47999999975543332  223337999999763               23457777777653    4789999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcE-----EEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGL-----LVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~-----lii~~~~  276 (343)
                      +++    +.+..+-.++..+.+.|+|+|.     |+++.|.
T Consensus       115 NfV----P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen  115 NFV----PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             eeC----CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            988    5567888999999999999999     8887653

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.98  E-value=6.3e-05  Score=68.91  Aligned_cols=118  Identities=22%  Similarity=0.189  Sum_probs=75.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      ..+.+|||+|||+|..+..+.+.  ...+++++|.|+.|++.++..+...... ..........+...-...|+|++..+
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~  111 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV  111 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence            45679999999999876666554  2448999999999999999876544311 11111111111111123499999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      |.-+.    . ..+..+++++.+.+.+  .|+++.+... ..+.+..++
T Consensus       112 L~EL~----~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR  153 (274)
T PF09243_consen  112 LNELP----S-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEAR  153 (274)
T ss_pred             hhcCC----c-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHH
Confidence            88773    2 5566778888887766  6666655443 334444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.97  E-value=2.5e-05  Score=64.05  Aligned_cols=59  Identities=17%  Similarity=0.232  Sum_probs=51.8

Q ss_pred             eEEEEccCccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC
Q 019324          167 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~  225 (343)
                      ++||+|||.|.++..++..+.. +++++|.++.+.+.+++++..++.+++.++...+.+-
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence            4899999999999999988643 7999999999999999999988877788888877653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.95  E-value=8.2e-05  Score=66.34  Aligned_cols=107  Identities=16%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             ccchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc--
Q 019324          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL--  227 (343)
Q Consensus       153 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~--  227 (343)
                      .+++.+++ ..++.+|||-|+|+|.++.++++. + -.+++.+|+...-.+.|++.++..++ +++++.+-|+...-+  
T Consensus        95 a~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   95 AMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            33444443 388999999999999999999887 2 34899999999999999999999888 589999999988654  


Q ss_pred             -CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          228 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                       ...+|.|+..-.         .+   ...+-.+.++||.+|.-++
T Consensus       174 ks~~aDaVFLDlP---------aP---w~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  174 KSLKADAVFLDLP---------AP---WEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             cccccceEEEcCC---------Ch---hhhhhhhHHHhhhcCceEE
Confidence             456777776422         12   2234666778887764333

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.95  E-value=9.9e-05  Score=64.37  Aligned_cols=100  Identities=18%  Similarity=0.289  Sum_probs=74.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~  236 (343)
                      .++.+||-+|..+|....+++.- | -..|+|+++|+...+..-..++..  +|+--+..|+.....    -+..|+|++
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEEe
Confidence            67899999999999998888876 4 348999999998777666555544  489889999987642    368999997


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .     +    ..+.+...++.++...||+||.+++.
T Consensus       150 D-----V----aQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  150 D-----V----AQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             E----------SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-----C----CChHHHHHHHHHHHhhccCCcEEEEE
Confidence            4     2    12356667889999999999999986

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.91  E-value=0.00014  Score=72.11  Aligned_cols=170  Identities=16%  Similarity=0.170  Sum_probs=109.9

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-C----CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCC
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD  224 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g----~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~  224 (343)
                      +.++++.++.. .+..+|+|..||+|.+.....+. +    ...++|.|+++.....|+.|+-.+|+. ++....+|-..
T Consensus       174 v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~  252 (489)
T COG0286         174 VSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLS  252 (489)
T ss_pred             HHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccccc
Confidence            44555555554 45669999999999987776654 1    136999999999999999999998875 35666666544


Q ss_pred             Ccc------CCCccEEEECcccccccc------------------CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324          225 TKL------ERQFQLVMDKGTLDAIGL------------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  280 (343)
Q Consensus       225 ~~~------~~~fD~V~~~~~l~~i~~------------------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~  280 (343)
                      .+.      .+.||+|+++..+....+                  .+.....-..+++.+...|+|||+.-+..+.....
T Consensus       253 ~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlf  332 (489)
T COG0286         253 NPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLF  332 (489)
T ss_pred             CCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCc
Confidence            432      257999999987741111                  11222233688999999999998776665554321


Q ss_pred             H--HHHHHHhhhhccccccccchhhhhcccCCCCeeEecccccCCcccccCccCeeEeEEEEee
Q 019324          281 E--LVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR  342 (343)
Q Consensus       281 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~p~~~f~g~~g~~v~~v~f~r  342 (343)
                      .  .-..+++...                   . -..+..+-..|...|.+. |..++.+.|.|
T Consensus       333 r~~~e~~IR~~l~-------------------~-~~~~~~ii~lp~~lF~~t-~i~~~Il~l~k  375 (489)
T COG0286         333 RGGAEKDIRKDLL-------------------E-DNLLEAIIGLPTGLFYNT-GIPTNILFLTK  375 (489)
T ss_pred             CCCchHHHHHHHH-------------------h-ccceEEeeeCChhhcccC-CCCeEEEEeec
Confidence            1  2222221110                   1 012233444677777776 88888888876

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.89  E-value=0.00011  Score=60.49  Aligned_cols=75  Identities=23%  Similarity=0.390  Sum_probs=59.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHh-----cCCCcEEEEeCChHHHHHHHHHHHHcC--C-CceEEEEccCCCCccCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSK-----QGFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTKLERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~-----~g~~~v~gvD~s~~~i~~a~~~~~~~~--~-~~i~~~~~D~~~~~~~~~fD~V  234 (343)
                      .+..+|+|+|||.|.++..|+.     ....+|+|+|.++..++.+.++....+  . .++.+...++.........+++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL  103 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence            5678999999999999999998     533489999999999999999888776  3 4577777776655445566777


Q ss_pred             EEC
Q 019324          235 MDK  237 (343)
Q Consensus       235 ~~~  237 (343)
                      +..
T Consensus       104 vgL  106 (141)
T PF13679_consen  104 VGL  106 (141)
T ss_pred             EEe
Confidence            753

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.86  E-value=5.7e-05  Score=70.15  Aligned_cols=91  Identities=14%  Similarity=0.157  Sum_probs=66.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.++|||||++|.++..|+++|. +|+|||..+-.-.     +...  ++|..+..|.....+ .+.+|.++|..+  
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~-----L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmv--  279 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQS-----LMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMV--  279 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHh-----hhCC--CCEEEEeccCcccCCCCCCCCEEEEecc--
Confidence            5788999999999999999999987 9999997653211     1112  589999998877765 678999998643  


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCC--cEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPG--GLLVI  272 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~Lkpg--G~lii  272 (343)
                               ..+....+-+.+.|..|  ...++
T Consensus       280 ---------e~P~rva~lm~~Wl~~g~cr~aIf  303 (357)
T PRK11760        280 ---------EKPARVAELMAQWLVNGWCREAIF  303 (357)
T ss_pred             ---------cCHHHHHHHHHHHHhcCcccEEEE
Confidence                     23334556677777665  34444

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.85  E-value=0.00015  Score=65.99  Aligned_cols=108  Identities=26%  Similarity=0.372  Sum_probs=65.3

Q ss_pred             CCCeEEEEccCccHHHH-HHHhc-CC-CcEEEEeCChHHHHHHHHHHH-HcCC-CceEEEEccCCCCccC-CCccEEEEC
Q 019324          164 SSWSVLDIGTGNGLLLQ-ELSKQ-GF-SDLTGVDYSEDAINLAQSLAN-RDGF-SCIKFLVDDVLDTKLE-RQFQLVMDK  237 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~-~la~~-g~-~~v~gvD~s~~~i~~a~~~~~-~~~~-~~i~~~~~D~~~~~~~-~~fD~V~~~  237 (343)
                      .+.+|+=||||.==++. .+++. +. ..|+++|+++.+++.+++... ..++ .++.|+.+|..+...+ ..||+|+..
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            35699999999765544 44443 32 379999999999999999777 3333 4799999999876543 689999976


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .....-      ......++.++.+.++||..+++-+.+.
T Consensus       200 alVg~~------~e~K~~Il~~l~~~m~~ga~l~~Rsa~G  233 (276)
T PF03059_consen  200 ALVGMD------AEPKEEILEHLAKHMAPGARLVVRSAHG  233 (276)
T ss_dssp             TT-S----------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred             hhcccc------cchHHHHHHHHHhhCCCCcEEEEecchh
Confidence            543211      1345578899999999999999875544

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.82  E-value=0.00029  Score=64.11  Aligned_cols=73  Identities=12%  Similarity=0.099  Sum_probs=58.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------CCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------~~~fD~V  234 (343)
                      .++...+|.--|-|..+..+++..  ...++|+|-++.+++.|++++...+ .++.+++.++.++..      .+++|-|
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGi  100 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGI  100 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEE
Confidence            677899999999999999999884  2479999999999999999988766 488888887665431      2466666


Q ss_pred             EE
Q 019324          235 MD  236 (343)
Q Consensus       235 ~~  236 (343)
                      +.
T Consensus       101 L~  102 (314)
T COG0275         101 LL  102 (314)
T ss_pred             EE
Confidence            54

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.80  E-value=5.1e-05  Score=69.11  Aligned_cols=75  Identities=25%  Similarity=0.303  Sum_probs=62.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC----CccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER----QFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~----~fD~V~~~~  238 (343)
                      .++..|||||+|.|.++..|++.+ .+++++|+++..++..+++....  ++++++.+|+.++....    ....|+++-
T Consensus        29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~--~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl  105 (262)
T PF00398_consen   29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN--PNVEVINGDFLKWDLYDLLKNQPLLVVGNL  105 (262)
T ss_dssp             GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC--SSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred             CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc--ccceeeecchhccccHHhhcCCceEEEEEe
Confidence            368899999999999999999997 69999999999999999977632  58999999999987533    556777765


Q ss_pred             cc
Q 019324          239 TL  240 (343)
Q Consensus       239 ~l  240 (343)
                      ++
T Consensus       106 Py  107 (262)
T PF00398_consen  106 PY  107 (262)
T ss_dssp             TG
T ss_pred             cc
Confidence            55

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.00013  Score=64.15  Aligned_cols=96  Identities=20%  Similarity=0.207  Sum_probs=71.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCcc---CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL---ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~---~~~fD~V~~~~  238 (343)
                      .++..+||||+-||.++..++++|++.|+|+|..-..+..--++    . ++ +.+...|+..+..   .+..|++++.-
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv  152 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPEDFTEKPDLIVIDV  152 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence            67899999999999999999999999999999987655433221    1 23 3444556665542   45788999864


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .+  |        ....+|..+..+++|+|.++..
T Consensus       153 SF--I--------SL~~iLp~l~~l~~~~~~~v~L  177 (245)
T COG1189         153 SF--I--------SLKLILPALLLLLKDGGDLVLL  177 (245)
T ss_pred             eh--h--------hHHHHHHHHHHhcCCCceEEEE
Confidence            44  2        3346789999999999887764

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.71  E-value=0.00011  Score=65.19  Aligned_cols=92  Identities=20%  Similarity=0.118  Sum_probs=68.8

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER  229 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~  229 (343)
                      +++....++....++.+|+|||||--=++..+.... ...++|+|++..+++.........+. +.++...|+....+..
T Consensus        92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~  170 (251)
T PF07091_consen   92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKE  170 (251)
T ss_dssp             HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTS
T ss_pred             HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCC
Confidence            444444555555668999999999998888877663 23899999999999999999888885 7889999999987788


Q ss_pred             CccEEEECcccccc
Q 019324          230 QFQLVMDKGTLDAI  243 (343)
Q Consensus       230 ~fD~V~~~~~l~~i  243 (343)
                      ..|+.+..-++..+
T Consensus       171 ~~DlaLllK~lp~l  184 (251)
T PF07091_consen  171 PADLALLLKTLPCL  184 (251)
T ss_dssp             EESEEEEET-HHHH
T ss_pred             CcchhhHHHHHHHH
Confidence            89999987776655

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=0.00066  Score=58.15  Aligned_cols=100  Identities=18%  Similarity=0.315  Sum_probs=79.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~~  237 (343)
                      .++.+||=+|+.+|....+++.- |...++|+++|+......-..+...  +|+--+..|+....    +-+..|+|+..
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D  152 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQD  152 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEEe
Confidence            78999999999999999888886 5447999999999887777666554  48888999998864    24678888863


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                           +    ..+.+..-+..++...||+||.+++.
T Consensus       153 -----V----AQp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         153 -----V----AQPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             -----c----CCchHHHHHHHHHHHhcccCCeEEEE
Confidence                 2    23456677789999999999987774

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.66  E-value=0.0004  Score=62.62  Aligned_cols=110  Identities=16%  Similarity=0.172  Sum_probs=68.0

Q ss_pred             CCeEEEEccCcc--HHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C-
Q 019324          165 SWSVLDIGTGNG--LLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E-  228 (343)
Q Consensus       165 ~~~VLDiGcG~G--~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~-  228 (343)
                      -...||||||-=  .....+++.  +..+|+-+|++|..+..++..+..+......++++|+.+...           + 
T Consensus        69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF  148 (267)
T ss_dssp             --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred             cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence            357999999943  234445443  345999999999999999998776532238899999987531           1 


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ...=.++..++++++.    ...+...++..++..|.||.+|+++.....
T Consensus       149 ~rPVavll~~vLh~v~----D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  149 DRPVAVLLVAVLHFVP----DDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             TS--EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             CCCeeeeeeeeeccCC----CccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            1222566778888872    224566788999999999999999876654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.64  E-value=0.00068  Score=58.58  Aligned_cols=103  Identities=14%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCC---CCccCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL---DTKLERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~---~~~~~~~fD~V~~~~~  239 (343)
                      .++.+||++|-|.|.....+-+....+=+-|+..|..++..+...-... .|+....+-..   ..-+++.||-|+-..-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~yDTy  178 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIYYDTY  178 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeEeech
Confidence            6789999999999999998888765577889999999999987643332 36666666443   3335788999985422


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      -.+       .++...+.+.+.++|||+|++-+.
T Consensus       179 ~e~-------yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  179 SEL-------YEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             hhH-------HHHHHHHHHHHhhhcCCCceEEEe
Confidence            122       267777889999999999987653

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.64  E-value=0.00022  Score=65.55  Aligned_cols=78  Identities=21%  Similarity=0.302  Sum_probs=46.8

Q ss_pred             CCeEEEEccCccHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHHc-CC-CceEEEEccC----CCCc--cCCCccEE
Q 019324          165 SWSVLDIGTGNGLLLQELSK--QGFSDLTGVDYSEDAINLAQSLANRD-GF-SCIKFLVDDV----LDTK--LERQFQLV  234 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~--~g~~~v~gvD~s~~~i~~a~~~~~~~-~~-~~i~~~~~D~----~~~~--~~~~fD~V  234 (343)
                      .-++||||||...+--.|..  .|+ +++|+|+++.+++.|+++.+.+ ++ .+|+++...-    ....  ..+.||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            56899999999865433332  265 8999999999999999999999 66 3688875532    2211  13689999


Q ss_pred             EECcccccc
Q 019324          235 MDKGTLDAI  243 (343)
Q Consensus       235 ~~~~~l~~i  243 (343)
                      +||..+..-
T Consensus       182 mCNPPFy~s  190 (299)
T PF05971_consen  182 MCNPPFYSS  190 (299)
T ss_dssp             EE-----SS
T ss_pred             ecCCccccC
Confidence            999988654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK10742 putative methyltransferase; Provisional

Probab=97.62  E-value=0.0002  Score=63.80  Aligned_cols=79  Identities=15%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             CCCC--eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc------CC---CceEEEEccCCCCc--cCC
Q 019324          163 LSSW--SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------GF---SCIKFLVDDVLDTK--LER  229 (343)
Q Consensus       163 ~~~~--~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~------~~---~~i~~~~~D~~~~~--~~~  229 (343)
                      .++.  +|||+-+|.|..++.++..|+ +|+++|-++.+....+.++...      +.   .+++++.+|..++-  ...
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~  163 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP  163 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence            3444  899999999999999999998 5999999999999999988774      21   46889999987653  245


Q ss_pred             CccEEEECccccc
Q 019324          230 QFQLVMDKGTLDA  242 (343)
Q Consensus       230 ~fD~V~~~~~l~~  242 (343)
                      .||+|+....+.+
T Consensus       164 ~fDVVYlDPMfp~  176 (250)
T PRK10742        164 RPQVVYLDPMFPH  176 (250)
T ss_pred             CCcEEEECCCCCC
Confidence            7999999877654

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.62  E-value=0.00095  Score=56.45  Aligned_cols=114  Identities=19%  Similarity=0.193  Sum_probs=72.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCCCCc---------cCCC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTK---------LERQ  230 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~~---------~~~~  230 (343)
                      .++.+|||+||..|.++.-..+.  +...|.|+|+-.-           ...+.+.++++ |+++..         +...
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~  136 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP  136 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence            77999999999999999988887  2348999998421           11235666776 777652         2468


Q ss_pred             ccEEEECccccccccCCCChhhHH----HHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRI----MYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~----~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      .|+|++...-.+-+....+.....    ..+.-....++|+|.+++-..... ...+.+.+.
T Consensus       137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~  198 (232)
T KOG4589|consen  137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQ  198 (232)
T ss_pred             ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHH
Confidence            999998643332222111112222    233445677889999999766554 444555554

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.53  E-value=0.00069  Score=55.14  Aligned_cols=89  Identities=13%  Similarity=0.208  Sum_probs=61.1

Q ss_pred             cEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc--C-CCccEEEECccccccccC----CCChhhHHHHHHHH
Q 019324          189 DLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--E-RQFQLVMDKGTLDAIGLH----PDGPLKRIMYWDSV  260 (343)
Q Consensus       189 ~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~--~-~~fD~V~~~~~l~~i~~~----~~~~~~~~~~l~~~  260 (343)
                      +|+|+|+.+.+++.++++++..++. +++++...-..+..  + +++|+++.|-  .++.-.    ...+......++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence            5899999999999999999998874 69999887666542  3 4899998762  233210    12245667888999


Q ss_pred             hhccCCCcEEEEEecCCCh
Q 019324          261 SKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       261 ~~~LkpgG~lii~~~~~~~  279 (343)
                      .++|+|||++.++.+....
T Consensus        79 l~lL~~gG~i~iv~Y~GH~   97 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHP   97 (140)
T ss_dssp             HHHEEEEEEEEEEE--STC
T ss_pred             HHhhccCCEEEEEEeCCCC
Confidence            9999999999997776544

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.49  E-value=6.5e-05  Score=58.36  Aligned_cols=97  Identities=25%  Similarity=0.326  Sum_probs=43.1

Q ss_pred             EEEccCccHHHHHHHhc----CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--c-CCCccEEEECccc
Q 019324          169 LDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--L-ERQFQLVMDKGTL  240 (343)
Q Consensus       169 LDiGcG~G~~~~~la~~----g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~-~~~fD~V~~~~~l  240 (343)
                      |||||..|..+..+++.    +..+++++|..+. .+..++..+..++ .+++++.++..+.-  . .+++|+++..+. 
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence            68999999988887764    2127999999995 2233333332333 37999999986642  2 378999997652 


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                       |-      .......++.+.+.|+|||++++..
T Consensus        79 -H~------~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 -HS------YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             -CC------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence             11      2455667899999999999998753

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.42  E-value=0.0007  Score=57.61  Aligned_cols=114  Identities=14%  Similarity=0.149  Sum_probs=72.4

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-CCC-cEEEEeCChHHHHH----HHHH--HHHcCCCceEEEEccCCCCccCCCcc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAINL----AQSL--ANRDGFSCIKFLVDDVLDTKLERQFQ  232 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~-~v~gvD~s~~~i~~----a~~~--~~~~~~~~i~~~~~D~~~~~~~~~fD  232 (343)
                      .++++.+|+|+=.|.|.++..++.. |.. .|+++=..+...-.    .+.+  .......|++.+-.++..+..++..|
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d  124 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD  124 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence            4478999999999999999999876 332 67776554432111    1111  11112235666666666555567788


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ++..+...+.+......+....++...+.+.|||||++++..
T Consensus       125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence            888755444332222224455677799999999999999853

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.39  E-value=0.00079  Score=60.90  Aligned_cols=128  Identities=19%  Similarity=0.303  Sum_probs=94.0

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC--C--CceEEEEccCCCCc---cCCCcc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG--F--SCIKFLVDDVLDTK---LERQFQ  232 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~--~--~~i~~~~~D~~~~~---~~~~fD  232 (343)
                      ....+++||-||-|-|.+....+.+ ...++.-+|++.+.++..++-.....  .  +++.+..+|...+-   ..++||
T Consensus       118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            4466899999999999999988888 34489999999999999988654432  2  57999999876542   257999


Q ss_pred             EEEECccccccccCCCCh---hhHHHHHHHHhhccCCCcEEEEE-ecCCChHHHHHHHHhhhhccc
Q 019324          233 LVMDKGTLDAIGLHPDGP---LKRIMYWDSVSKLVAPGGLLVIT-SCNSTKDELVHEVSNLSQRRI  294 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~---~~~~~~l~~~~~~LkpgG~lii~-~~~~~~~~~~~~~~~~~~~~~  294 (343)
                      +|+....      .|..+   .-...+++.+.+.||+||++++. .+-+-......++++|....+
T Consensus       198 Vii~dss------dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f  257 (337)
T KOG1562|consen  198 VIITDSS------DPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIF  257 (337)
T ss_pred             EEEEecC------CccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhc
Confidence            9996421      12222   23457788899999999999884 455556667777776665554

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.00085  Score=61.14  Aligned_cols=103  Identities=19%  Similarity=0.314  Sum_probs=69.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHH---HHcC-------------------------C--
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA---NRDG-------------------------F--  212 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~---~~~~-------------------------~--  212 (343)
                      ..+.+||--|||.|+++..|+..|+ .+-|-++|--|+-...=.+   +..+                         +  
T Consensus       149 r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD  227 (369)
T KOG2798|consen  149 RTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD  227 (369)
T ss_pred             ccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence            3467999999999999999999988 6778888887775443222   1000                         0  


Q ss_pred             ----------CceEEEEccCCCCcc----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          213 ----------SCIKFLVDDVLDTKL----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       213 ----------~~i~~~~~D~~~~~~----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                                .......+|+.+.-.    .+.||+|+...-++       .......+++.|.++|||||+.+=.
T Consensus       228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID-------Ta~NileYi~tI~~iLk~GGvWiNl  295 (369)
T KOG2798|consen  228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID-------TAHNILEYIDTIYKILKPGGVWINL  295 (369)
T ss_pred             ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee-------chHHHHHHHHHHHHhccCCcEEEec
Confidence                      011223355544322    24699888765443       3467888999999999999988754

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.29  E-value=0.00051  Score=65.63  Aligned_cols=99  Identities=24%  Similarity=0.273  Sum_probs=74.6

Q ss_pred             CCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCc--eEEEEccCCCCc--cCCCccEEEEC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTK--LERQFQLVMDK  237 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~--i~~~~~D~~~~~--~~~~fD~V~~~  237 (343)
                      .+.+|||.=+|+|.=++..+..  +..+|++-|+|+.+++..++|++.++++.  +++.+.|+..+-  ....||+|=..
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD  128 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD  128 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence            4569999999999887777666  55699999999999999999999999854  888898987754  46788888642


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                               |-  .....+++.+.+.++.||+|.++
T Consensus       129 ---------Pf--GSp~pfldsA~~~v~~gGll~vT  153 (377)
T PF02005_consen  129 ---------PF--GSPAPFLDSALQAVKDGGLLCVT  153 (377)
T ss_dssp             ----------S--S--HHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------CC--CCccHhHHHHHHHhhcCCEEEEe
Confidence                     11  34457889999999999999996

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.27  E-value=0.011  Score=52.54  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~~  238 (343)
                      ..+++||=+|=.--. +++++. ....+|+.+|++++.++..++.++..|+ +++.+..|+.+.-+   .++||+++...
T Consensus        43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TDP  120 (243)
T PF01861_consen   43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGKFDVFFTDP  120 (243)
T ss_dssp             STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE--
T ss_pred             ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcCCCEEEeCC
Confidence            568899999855432 333333 2345999999999999999999999998 49999999998643   48999999865


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCc-EEEEEecCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGG-LLVITSCNS  277 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG-~lii~~~~~  277 (343)
                      +        ........++......||..| ..++.....
T Consensus       121 P--------yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~  152 (243)
T PF01861_consen  121 P--------YTPEGLKLFLSRGIEALKGEGCAGYFGFTHK  152 (243)
T ss_dssp             ---------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred             C--------CCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence            4        334667789999999998766 555544433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.25  E-value=0.0064  Score=53.01  Aligned_cols=116  Identities=17%  Similarity=0.131  Sum_probs=86.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc-cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~-~~~~fD~V~~~~~  239 (343)
                      ..+.++.||||-.+.+...|.+.+ ...+++.|+++..++.|.+++..+++ ++++..++|....- .+..+|+|+..|.
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM   94 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM   94 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence            445569999999999999999985 44899999999999999999999887 57888888886543 3457898886442


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                               +......++++-.+.|+.--++++ -|+.....+.+++..
T Consensus        95 ---------GG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~~  133 (226)
T COG2384          95 ---------GGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLSA  133 (226)
T ss_pred             ---------cHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHHh
Confidence                     123344566777777765544544 477777888877763

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.25  E-value=0.00041  Score=64.09  Aligned_cols=83  Identities=13%  Similarity=0.109  Sum_probs=57.5

Q ss_pred             ccchhhhhccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----
Q 019324          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----  227 (343)
Q Consensus       153 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----  227 (343)
                      .++++.+. ..++..++|.--|.|..+..+++. +..+++|+|-++.+++.+++++.... .++.++.+++.++..    
T Consensus        10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~   87 (310)
T PF01795_consen   10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKE   87 (310)
T ss_dssp             HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHH
T ss_pred             HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHH
Confidence            33444443 267789999999999999999987 33699999999999999998876554 488999988876531    


Q ss_pred             ---CCCccEEEEC
Q 019324          228 ---ERQFQLVMDK  237 (343)
Q Consensus       228 ---~~~fD~V~~~  237 (343)
                         ...+|.|+..
T Consensus        88 ~~~~~~~dgiL~D  100 (310)
T PF01795_consen   88 LNGINKVDGILFD  100 (310)
T ss_dssp             TTTTS-EEEEEEE
T ss_pred             ccCCCccCEEEEc
Confidence               2467777754

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.19  E-value=0.0013  Score=56.34  Aligned_cols=121  Identities=14%  Similarity=0.140  Sum_probs=74.9

Q ss_pred             CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC-------CCceEEEEccCCCCccC----CCcc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------FSCIKFLVDDVLDTKLE----RQFQ  232 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~-------~~~i~~~~~D~~~~~~~----~~fD  232 (343)
                      .-.+.|||||-|.++..|+.. +..-+.|.+|--...+..++++...+       .+|+.+...+.....+.    +..+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            457999999999999999988 44489999999999999988877655       45677777776665321    1111


Q ss_pred             E-EEECccccccc--cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          233 L-VMDKGTLDAIG--LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       233 ~-V~~~~~l~~i~--~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      - .++.. -.|+-  -|.. ..-...++.+..-+|++||.++..+-... ...+...++
T Consensus       141 kmff~fp-dpHfk~~khk~-rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e  197 (249)
T KOG3115|consen  141 KMFFLFP-DPHFKARKHKW-RIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLE  197 (249)
T ss_pred             cceeecC-ChhHhhhhccc-eeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHH
Confidence            1 11110 00110  0000 01112566888889999999998654332 333444333

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.013  Score=54.79  Aligned_cols=122  Identities=16%  Similarity=0.065  Sum_probs=83.1

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCC---C--cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--------
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGF---S--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------  227 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~---~--~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--------  227 (343)
                      .+.++.+|||+++..|.=+..|.+..+   .  .|++=|+++.-+...+........+++.+...|+...+-        
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence            458899999999999998888877622   1  699999999988888877665554555555555544321        


Q ss_pred             --CCCccEEEECcccccccc--CCC--------------ChhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324          228 --ERQFQLVMDKGTLDAIGL--HPD--------------GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  282 (343)
Q Consensus       228 --~~~fD~V~~~~~l~~i~~--~~~--------------~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  282 (343)
                        ...||-|++.-....=+.  +..              =+.-...++.+-.++||+||+++.++|.-+..+.
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN  304 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN  304 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence              246898887532111000  000              0122346788999999999999999998765443

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.0027  Score=51.69  Aligned_cols=106  Identities=16%  Similarity=0.243  Sum_probs=76.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+..+.+|+|.|.|++....++.|....+|+++++-.+..++-+.-..|+ ....|..-|+.+.++. .|..++..+.-.
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-dy~~vviFgaes  149 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-DYRNVVIFGAES  149 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-ccceEEEeehHH
Confidence            56689999999999999999999866899999999999999988877777 4688999999887663 233333322211


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      .+       .+   +-.++..-|..+-.++..-+.-+.
T Consensus       150 ~m-------~d---Le~KL~~E~p~nt~vvacRFPLP~  177 (199)
T KOG4058|consen  150 VM-------PD---LEDKLRTELPANTRVVACRFPLPT  177 (199)
T ss_pred             HH-------hh---hHHHHHhhCcCCCeEEEEecCCCc
Confidence            11       22   225566677777777765544443

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.07  E-value=0.0042  Score=53.82  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHH------------------------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANR------------------------------  209 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~------------------------------  209 (343)
                      ..+-++.|.+||.|.++.-+.-.   ....|+|.|+++.+++.|++|+..                              
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            45679999999999987665433   234899999999999999998742                              


Q ss_pred             -----------c-CCCceEEEEccCCCCc------cCCCccEEEECccccccccCCCC---hhhHHHHHHHHhhccCCCc
Q 019324          210 -----------D-GFSCIKFLVDDVLDTK------LERQFQLVMDKGTLDAIGLHPDG---PLKRIMYWDSVSKLVAPGG  268 (343)
Q Consensus       210 -----------~-~~~~i~~~~~D~~~~~------~~~~fD~V~~~~~l~~i~~~~~~---~~~~~~~l~~~~~~LkpgG  268 (343)
                                 . +.......+.|+++..      .....|+|+..-....+. ++.+   ..-...+|..+..+|.+++
T Consensus       130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t-~W~g~~~~~p~~~ml~~l~~vLp~~s  208 (246)
T PF11599_consen  130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT-SWQGEGSGGPVAQMLNSLAPVLPERS  208 (246)
T ss_dssp             HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS-STTS---HHHHHHHHHHHHCCS-TT-
T ss_pred             HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc-cccCCCCCCcHHHHHHHHHhhCCCCc
Confidence                       1 1223678888998853      234479999865554442 2222   2345678999999995445


Q ss_pred             EEEE
Q 019324          269 LLVI  272 (343)
Q Consensus       269 ~lii  272 (343)
                      ++.+
T Consensus       209 VV~v  212 (246)
T PF11599_consen  209 VVAV  212 (246)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.0012  Score=54.60  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             CCCeEEEEccCccHHHHHH-Hhc-CCCcEEEEeCChHHHHHHHHHHHHcC---CCceEEEEccCCCCc---cCCCccEEE
Q 019324          164 SSWSVLDIGTGNGLLLQEL-SKQ-GFSDLTGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTK---LERQFQLVM  235 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~l-a~~-g~~~v~gvD~s~~~i~~a~~~~~~~~---~~~i~~~~~D~~~~~---~~~~fD~V~  235 (343)
                      .+.+|||+|.|--.++-.| +.. ....|.-+|-++.+++..++....+.   ..+|....-+.....   ....||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            4679999999965554444 433 34589999999999999988665542   223433333332221   245899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC--hHHHHHHHH
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST--KDELVHEVS  287 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~--~~~~~~~~~  287 (343)
                      +..++- +      .+....+++.|..+|+|.|..++.+|.+-  .+.+.+++.
T Consensus       109 aADClF-f------dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~  155 (201)
T KOG3201|consen  109 AADCLF-F------DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVG  155 (201)
T ss_pred             eccchh-H------HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHH
Confidence            977652 2      14556778999999999999888776542  344444444

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.84  E-value=0.0079  Score=55.16  Aligned_cols=71  Identities=15%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEECcccccc
Q 019324          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAI  243 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~~~l~~i  243 (343)
                      +|+|+.||.|.++..+.+.|+..+.++|+++.+++..+.|..     +. ++++|+.+...   ...+|+++.......+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f   75 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPF   75 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence            699999999999999998888789999999999999998863     21 56677777653   3579999987765544

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.84  E-value=0.002  Score=59.52  Aligned_cols=118  Identities=19%  Similarity=0.130  Sum_probs=86.2

Q ss_pred             hhhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHH-------HHHHHHHcCCC--ceEEEEccCCCCcc
Q 019324          157 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL-------AQSLANRDGFS--CIKFLVDDVLDTKL  227 (343)
Q Consensus       157 ~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~-------a~~~~~~~~~~--~i~~~~~D~~~~~~  227 (343)
                      .......+++-|+|-..|||.++...+.-|. .|+|.||+-.++..       .+.|++..|..  -+.++.+|....+.
T Consensus       201 AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~  279 (421)
T KOG2671|consen  201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL  279 (421)
T ss_pred             hhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch
Confidence            3344568899999999999999999999986 89999999999883       45677777752  37788899988765


Q ss_pred             --CCCccEEEECcccccc--------------------ccCCC--Chh----hHHHHHHHHhhccCCCcEEEEEec
Q 019324          228 --ERQFQLVMDKGTLDAI--------------------GLHPD--GPL----KRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       228 --~~~fD~V~~~~~l~~i--------------------~~~~~--~~~----~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                        ...||.|+|......-                    ..|-+  +..    ....++.-.++.|..||++++-.+
T Consensus       280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence              5789999997533110                    00111  111    123455667899999999998655

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=96.75  E-value=0.0011  Score=54.71  Aligned_cols=107  Identities=20%  Similarity=0.273  Sum_probs=70.8

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHH-HHHHHHcCCCceEEEEccCCCC--ccCCCccEEEECcccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLA-QSLANRDGFSCIKFLVDDVLDT--KLERQFQLVMDKGTLD  241 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a-~~~~~~~~~~~i~~~~~D~~~~--~~~~~fD~V~~~~~l~  241 (343)
                      +++++-+|...=.+=....++|+++++.+++++--++.- +.++       ..+...|..+.  ...++||.+.|..+++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------ssi~p~df~~~~~~y~~~fD~~as~~siE   74 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------SSILPVDFAKNWQKYAGSFDFAASFSSIE   74 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------ccccHHHHHHHHHHhhccchhhheechhc
Confidence            457888888876666666677888999999875322211 1110       11222232221  1357899999999999


Q ss_pred             ccccC----CCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~----~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      |+.+.    |-++..-...+.++.++|||||.|++..|...
T Consensus        75 h~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   75 HFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             cccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence            99763    33333344567999999999999999887664

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.75  E-value=0.0031  Score=59.92  Aligned_cols=62  Identities=27%  Similarity=0.443  Sum_probs=53.1

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK  226 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~  226 (343)
                      ...|||||+|||.++...+..|...|++++.-..|.+.|++....+|. ++|+++..--++..
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK  129 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence            457999999999999999999877999999999999999999999987 47887766555443

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.74  E-value=0.005  Score=53.52  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-----CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc---------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL---------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-----g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~---------  227 (343)
                      .+++.|+|+|.-.|.-+..++..     +..+|+|+|++-........  +.... ++|+++++|..+...         
T Consensus        31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~  108 (206)
T PF04989_consen   31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPRITFIQGDSIDPEIVDQVRELAS  108 (206)
T ss_dssp             H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TTEEEEES-SSSTHHHHTSGSS--
T ss_pred             hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCceEEEECCCCCHHHHHHHHHhhc
Confidence            56889999999999877766542     33599999996544332221  11111 589999999987631         


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .....+|+..+.  |.      .......|+....+|++|+++++.
T Consensus       109 ~~~~vlVilDs~--H~------~~hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  109 PPHPVLVILDSS--HT------HEHVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             --SSEEEEESS------------SSHHHHHHHHHHT--TT-EEEET
T ss_pred             cCCceEEEECCC--cc------HHHHHHHHHHhCccCCCCCEEEEE
Confidence            234446665432  11      123345678899999999999985

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.71  E-value=0.0054  Score=53.59  Aligned_cols=116  Identities=20%  Similarity=0.233  Sum_probs=82.1

Q ss_pred             CCeEEEEccCccHHHHHHHhcC--------C--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------
Q 019324          165 SWSVLDIGTGNGLLLQELSKQG--------F--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------  226 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g--------~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------  226 (343)
                      -.++.|++...|.++..|.++-        .  ..+++||+.+.+           .++.+.-+++|++...        
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHH
Confidence            4589999999999999888751        1  139999996542           3357888999999864        


Q ss_pred             c-CCCccEEEECccccccccCCCChh----hHHHHHHHHhhccCCCcEEEEEec-CCChHHHHHHHHhhhh
Q 019324          227 L-ERQFQLVMDKGTLDAIGLHPDGPL----KRIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSNLSQ  291 (343)
Q Consensus       227 ~-~~~fD~V~~~~~l~~i~~~~~~~~----~~~~~l~~~~~~LkpgG~lii~~~-~~~~~~~~~~~~~~~~  291 (343)
                      + .++.|+|+|.+.-+.-.+|.....    .+...|.-...+|||||.|+--.+ ......+...++.|..
T Consensus       111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~  181 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFK  181 (294)
T ss_pred             hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhh
Confidence            2 358999999998777777664432    223455667889999999998433 4444555556665543

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.70  E-value=0.0048  Score=57.73  Aligned_cols=98  Identities=20%  Similarity=0.200  Sum_probs=75.3

Q ss_pred             CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECcccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD  241 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~  241 (343)
                      +.+|||.-+|+|.=++..+.. +..+|+.-|+||.+++.+++|+..+...+...+..|+..+-.  ...||+|=.     
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi-----  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI-----  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-----
Confidence            679999999999988888776 444899999999999999999999844466666677765432  356666542     


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                          +|-  ..+..+++.+.+.++.||++-++
T Consensus       128 ----DPF--GSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         128 ----DPF--GSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             ----CCC--CCCchHHHHHHHHhhcCCEEEEE
Confidence                222  23446889999999999999885

>PHA01634 hypothetical protein

Probab=96.64  E-value=0.0045  Score=49.08  Aligned_cols=49  Identities=10%  Similarity=-0.007  Sum_probs=45.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~  211 (343)
                      ..+++|+|||.+.|..++.++..|++.|++++.++...+..+++.+.+.
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            5688999999999999999999999999999999999999999887654

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.60  E-value=0.0014  Score=59.42  Aligned_cols=104  Identities=14%  Similarity=0.151  Sum_probs=78.3

Q ss_pred             CCCCeEEEEccCccHHHH-HHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~-~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      ..+..|.|+-+|-|.+++ .+...|++.|+|+|.+|.+++..+++++.+++ .++..+.+|-....+....|-|... . 
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG-L-  270 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG-L-  270 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec-c-
Confidence            456789999999999999 77777888999999999999999999999887 4677888888887777777777652 1 


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcE-EEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGL-LVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~-lii~~~~~  277 (343)
                        +   |    .-++-+-.+.++|||.|- ++-..-|-
T Consensus       271 --l---P----Sse~~W~~A~k~Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  271 --L---P----SSEQGWPTAIKALKPEGGSILHIHENV  299 (351)
T ss_pred             --c---c----ccccchHHHHHHhhhcCCcEEEEeccc
Confidence              1   1    122345677888888544 54444443

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.57  E-value=0.0067  Score=56.26  Aligned_cols=121  Identities=21%  Similarity=0.241  Sum_probs=70.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCC----CCccCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL----DTKLERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~----~~~~~~~fD~V~~  236 (343)
                      ..+.+|||+|.|.|.-+.++-..  ....++-++.|+..-+..-................|++    .++....|++++.
T Consensus       112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~  191 (484)
T COG5459         112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV  191 (484)
T ss_pred             cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence            44668999999999877666554  13477888888766555544333222122222333333    3333345666554


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                         ++-+. +......+..+++.+..++.|||.++++..... ..+.+...+
T Consensus       192 ---~~eLl-~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR  239 (484)
T COG5459         192 ---LDELL-PDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRAR  239 (484)
T ss_pred             ---hhhhc-cccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHH
Confidence               44332 333334445588999999999999999876554 334444333

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.47  E-value=0.0085  Score=46.17  Aligned_cols=32  Identities=34%  Similarity=0.570  Sum_probs=28.1

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS  196 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s  196 (343)
                      +.....|||||+|.+.-.|.+.|+ .-.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence            466899999999999999999998 78899973

; GO: 0008168 methyltransferase activity

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.39  E-value=0.017  Score=50.92  Aligned_cols=101  Identities=16%  Similarity=0.200  Sum_probs=70.8

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEE
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVM  235 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~  235 (343)
                      +.++.+||-+|+++|....++..- |. .-|+++++|+..=...-..+++.  +||--+..|+.....    -...|+|+
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmVDvIF  231 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMVDVIF  231 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeEEEEe
Confidence            378999999999999988888776 33 27999999987655444433322  478788888876531    24566666


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +.         -..+.+...+.-++...||+||.++++
T Consensus       232 aD---------vaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  232 AD---------VAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             cc---------CCCchhhhhhhhhhhhhhccCCeEEEE
Confidence            52         122344445556888999999999985

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.39  E-value=0.038  Score=49.48  Aligned_cols=108  Identities=11%  Similarity=0.091  Sum_probs=66.7

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC------CceEEEEccCCCCc----cCCC-cc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF------SCIKFLVDDVLDTK----LERQ-FQ  232 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~------~~i~~~~~D~~~~~----~~~~-fD  232 (343)
                      +..+|||+|.|+|..+..++..+..+|...|... .+...+.+...++.      ..+.....+.....    .... +|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            4668999999999888888886445888888754 44444443322221      13444444433332    1233 89


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      +|+...++..-    ....   .++.-+...|..+|++++.+.-+..
T Consensus       165 lilasDvvy~~----~~~e---~Lv~tla~ll~~~~~i~l~~~lr~~  204 (248)
T KOG2793|consen  165 LILASDVVYEE----ESFE---GLVKTLAFLLAKDGTIFLAYPLRRD  204 (248)
T ss_pred             EEEEeeeeecC----Ccch---hHHHHHHHHHhcCCeEEEEEecccc
Confidence            99987766432    2223   4457777888888877777665553

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.27  E-value=0.0025  Score=61.57  Aligned_cols=103  Identities=22%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             hccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-----CCCc
Q 019324          160 DKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----ERQF  231 (343)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-----~~~f  231 (343)
                      ....++.+|||.-|++|.-++..+..  |..+|++-|.++++|+..++|.+.++.. .++....|+...-.     ...|
T Consensus       105 ~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F  184 (525)
T KOG1253|consen  105 KREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF  184 (525)
T ss_pred             hhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence            34467889999999999998888876  5569999999999999999999988764 36666677655421     3678


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      |+|-..         |.  .....+|+.+.+.++.||+|+++
T Consensus       185 DvIDLD---------Py--Gs~s~FLDsAvqav~~gGLL~vT  215 (525)
T KOG1253|consen  185 DVIDLD---------PY--GSPSPFLDSAVQAVRDGGLLCVT  215 (525)
T ss_pred             ceEecC---------CC--CCccHHHHHHHHHhhcCCEEEEE
Confidence            877642         22  23346889999999999999986

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.27  E-value=0.011  Score=55.02  Aligned_cols=98  Identities=15%  Similarity=0.219  Sum_probs=66.8

Q ss_pred             eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEECcccccc
Q 019324          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAI  243 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~~~l~~i  243 (343)
                      +++|+.||.|.+...+.+.|+.-+.++|+++.+++.-+.|+.       ....+|+.+...   ++.+|+++.......+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~f   74 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQGF   74 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TTT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCceE
Confidence            799999999999999999998789999999999999999873       788999998863   2269999987665544


Q ss_pred             ccC-----C-CChhhHHHHHHHHhhccCCCcEEEE
Q 019324          244 GLH-----P-DGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       244 ~~~-----~-~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      ..-     . +....+..-+-++.+.++|.- +++
T Consensus        75 S~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~  108 (335)
T PF00145_consen   75 SIAGKRKGFDDPRNSLFFEFLRIVKELKPKY-FLL  108 (335)
T ss_dssp             STTSTHHCCCCHTTSHHHHHHHHHHHHS-SE-EEE
T ss_pred             eccccccccccccchhhHHHHHHHhhccceE-EEe
Confidence            321     1 111222323344556678864 444

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.98  E-value=0.00086  Score=51.91  Aligned_cols=47  Identities=19%  Similarity=0.340  Sum_probs=34.3

Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .||+|+|..+..+|.++. ++..+..+++.+++.|+|||++++..-++
T Consensus         1 ~yDvilclSVtkWIHLn~-GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w   47 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNW-GDEGLKRFFRRIYSLLRPGGILILEPQPW   47 (110)
T ss_dssp             -EEEEEEES-HHHHHHHH-HHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred             CccEEEEEEeeEEEEecC-cCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence            489999999888885432 23566789999999999999999974433

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.96  E-value=0.035  Score=52.08  Aligned_cols=95  Identities=18%  Similarity=0.242  Sum_probs=66.0

Q ss_pred             ccCCCCeEEEEccC-ccHHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc-CCCCc-cCCCccEEEE
Q 019324          161 KYLSSWSVLDIGTG-NGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLDTK-LERQFQLVMD  236 (343)
Q Consensus       161 ~~~~~~~VLDiGcG-~G~~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D-~~~~~-~~~~fD~V~~  236 (343)
                      +..++.+|+-+|+| .|.++..+++ .| .+|+++|.|+.-.+.|++.-.      -.++... ..... ..+.||+|+.
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA------d~~i~~~~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA------DHVINSSDSDALEAVKEIADAIID  235 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC------cEEEEcCCchhhHHhHhhCcEEEE
Confidence            44789999999987 3467788888 47 499999999999999997532      1223322 11111 1234999997


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      .-. .             ..+....+.|++||.+++....
T Consensus       236 tv~-~-------------~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         236 TVG-P-------------ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             CCC-h-------------hhHHHHHHHHhcCCEEEEECCC
Confidence            543 2             2358889999999999997554

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.96  E-value=0.039  Score=51.93  Aligned_cols=103  Identities=13%  Similarity=0.181  Sum_probs=75.1

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC---C-CccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---R-QFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~---~-~fD~V~~~~~l  240 (343)
                      ..+++|+.||.|.+..-+...|+.-+.++|+++.+++.-+.|..     ...++..|+......   . .+|+++.....
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~-----~~~~~~~di~~~~~~~~~~~~~DvligGpPC   77 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP-----HGDIILGDIKELDGEALRKSDVDVLIGGPPC   77 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC-----CCceeechHhhcChhhccccCCCEEEeCCCC
Confidence            45899999999999999999998889999999999999998874     245677777765432   2 78999988776


Q ss_pred             cccccC------CCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          241 DAIGLH------PDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       241 ~~i~~~------~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +.+..-      .+....+..-+.++...++| -.+++.
T Consensus        78 Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~E  115 (328)
T COG0270          78 QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLE  115 (328)
T ss_pred             cchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEe
Confidence            666431      11122223445677778888 455553

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.93  E-value=0.011  Score=57.47  Aligned_cols=101  Identities=15%  Similarity=0.249  Sum_probs=65.7

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCC--cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-c-cCCCccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-LERQFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~--~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~-~~~~fD~V~~~~~l  240 (343)
                      =..|+|+.+|.|.++.+|.+.+.-  .|+-+ ..++.+...-.    .|+   --.-.|..+. + .+.+||+|.++++|
T Consensus       366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIyd----RGL---IG~yhDWCE~fsTYPRTYDLlHA~~lf  437 (506)
T PF03141_consen  366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYD----RGL---IGVYHDWCEAFSTYPRTYDLLHADGLF  437 (506)
T ss_pred             eeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhh----ccc---chhccchhhccCCCCcchhheehhhhh
Confidence            458999999999999999987531  22222 12222222211    121   1122243332 2 47899999999988


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ....    .......++-++-|+|+|||.++|-....
T Consensus       438 s~~~----~rC~~~~illEmDRILRP~G~~iiRD~~~  470 (506)
T PF03141_consen  438 SLYK----DRCEMEDILLEMDRILRPGGWVIIRDTVD  470 (506)
T ss_pred             hhhc----ccccHHHHHHHhHhhcCCCceEEEeccHH
Confidence            7662    33567788899999999999999864433

; GO: 0008168 methyltransferase activity

>PRK11524 putative methyltransferase; Provisional

Probab=95.79  E-value=0.02  Score=52.74  Aligned_cols=46  Identities=15%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR  209 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~  209 (343)
                      .++..|||..||+|..+....+.|- +.+|+|+++..++.|++++..
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            6899999999999999999988874 899999999999999998753

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.71  E-value=0.05  Score=48.32  Aligned_cols=76  Identities=25%  Similarity=0.245  Sum_probs=47.9

Q ss_pred             CeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHH---HHHHcCC------CceEEEEccCCCCc--cCCCccEE
Q 019324          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS---LANRDGF------SCIKFLVDDVLDTK--LERQFQLV  234 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~---~~~~~~~------~~i~~~~~D~~~~~--~~~~fD~V  234 (343)
                      .+|||.-||-|..++.++..|+ +|++++-||.+-...+.   ++.....      .+++++.+|..++-  .+.+||+|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            4999999999999999998887 89999999987776664   2222221      27999999988753  36899999


Q ss_pred             EECccccc
Q 019324          235 MDKGTLDA  242 (343)
Q Consensus       235 ~~~~~l~~  242 (343)
                      +....+.+
T Consensus       156 Y~DPMFp~  163 (234)
T PF04445_consen  156 YFDPMFPE  163 (234)
T ss_dssp             EE--S---
T ss_pred             EECCCCCC
Confidence            99877654

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.66  E-value=0.23  Score=44.90  Aligned_cols=111  Identities=19%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEEC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDK  237 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~  237 (343)
                      ...++.|+-+| -.-..+++++-.| ..+|..+|+++..++...+.++..|+.|++.++-|+.+.-+   .+.||+++..
T Consensus       150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTD  228 (354)
T COG1568         150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITD  228 (354)
T ss_pred             CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecC
Confidence            36788899999 4445566665554 45999999999999999999999999889999999998743   4789999875


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCC---cEEEEEecCCChHH
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPG---GLLVITSCNSTKDE  281 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg---G~lii~~~~~~~~~  281 (343)
                      .+-        .-.....++..=...||.-   |++.++........
T Consensus       229 Ppe--------Ti~alk~FlgRGI~tLkg~~~aGyfgiT~ressidk  267 (354)
T COG1568         229 PPE--------TIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDK  267 (354)
T ss_pred             chh--------hHHHHHHHHhccHHHhcCCCccceEeeeeccccHHH
Confidence            321        1134456666666777765   77887765555443

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.59  E-value=0.063  Score=50.27  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=54.8

Q ss_pred             EEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECcccccc
Q 019324          168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAI  243 (343)
Q Consensus       168 VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i  243 (343)
                      |+|+.||.|.++.-+.+.|+.-+.++|+++.+++..+.|..     + .++.+|+.+...  -..+|+++.......+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f   72 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQPF   72 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence            68999999999999998898677889999999999998763     2 345678777643  2358999987655444

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK13699 putative methylase; Provisional

Probab=95.49  E-value=0.035  Score=49.37  Aligned_cols=47  Identities=19%  Similarity=0.096  Sum_probs=42.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~  210 (343)
                      .++..|||..||+|..+....+.|- +.+|+|+++...+.+.+++...
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            6889999999999999999988875 8999999999999999987653

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.41  E-value=0.019  Score=50.39  Aligned_cols=42  Identities=21%  Similarity=0.228  Sum_probs=35.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHH
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS  205 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~  205 (343)
                      .++..|||..||+|..+.+..+.|- +.+|+|+++..++.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            6789999999999999999999874 89999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.39  E-value=0.046  Score=49.39  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=49.7

Q ss_pred             CCeEEEEccCccHHHHHHHhc-C--------CCcEEEEeCChHHHHHHHHHHHHcC-----C-CceEEEEccCCCCccCC
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ-G--------FSDLTGVDYSEDAINLAQSLANRDG-----F-SCIKFLVDDVLDTKLER  229 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g--------~~~v~gvD~s~~~i~~a~~~~~~~~-----~-~~i~~~~~D~~~~~~~~  229 (343)
                      +.+|+|+|+|+|.++..+++. .        ..+++-+|.|+.+.+.-++++....     . .++.+ ..++.+.+   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            469999999999998888764 1        1379999999999999888876521     1 24555 33443332   


Q ss_pred             CccEEEECccccccc
Q 019324          230 QFQLVMDKGTLDAIG  244 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~  244 (343)
                      ..-+|++|.++|++.
T Consensus        95 ~~~~iiaNE~~DAlP  109 (252)
T PF02636_consen   95 FPGFIIANELFDALP  109 (252)
T ss_dssp             CCEEEEEESSGGGS-
T ss_pred             CCEEEEEeeehhcCc
Confidence            345677777776664

; PDB: 4F3N_A 1ZKD_B.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.39  E-value=0.13  Score=51.15  Aligned_cols=98  Identities=17%  Similarity=0.273  Sum_probs=63.2

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-----------Cc---
Q 019324          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-----------TK---  226 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-----------~~---  226 (343)
                      .++.+|+-+|||. |..+...++. |+ .|+++|.++..++.+++.    |.   ++...|..+           ..   
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA---~~v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA---EFLELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC---eEEEeccccccccccchhhhcchhH
Confidence            5789999999996 4455555555 76 899999999999988862    32   222222111           00   


Q ss_pred             -------c---CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          227 -------L---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       227 -------~---~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                             +   -..+|+|+.......       ......+.++..+.+||||+++....
T Consensus       235 ~~~~~~~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        235 IKAEMALFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                   0   146899997543211       01112234899999999999888655

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.36  E-value=0.17  Score=48.52  Aligned_cols=51  Identities=10%  Similarity=0.155  Sum_probs=35.6

Q ss_pred             cCCCccEEEECccccccccCCCCh-------------------------------hhHHHHHHHHhhccCCCcEEEEEec
Q 019324          227 LERQFQLVMDKGTLDAIGLHPDGP-------------------------------LKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       227 ~~~~fD~V~~~~~l~~i~~~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +.++.+++++...++++.--|...                               .+...+|+.=.+-|.|||+++++..
T Consensus       159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~  238 (386)
T PLN02668        159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL  238 (386)
T ss_pred             CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence            367899999998888885322211                               1234566666788999999999764


Q ss_pred             CC
Q 019324          276 NS  277 (343)
Q Consensus       276 ~~  277 (343)
                      .+
T Consensus       239 Gr  240 (386)
T PLN02668        239 GR  240 (386)
T ss_pred             cC
Confidence            44

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.22  E-value=0.058  Score=51.82  Aligned_cols=108  Identities=22%  Similarity=0.259  Sum_probs=66.4

Q ss_pred             cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc-CC----CCccCCCccEE
Q 019324          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VL----DTKLERQFQLV  234 (343)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D-~~----~~~~~~~fD~V  234 (343)
                      ..++.+||.+|||. |.++..+++. |...++++|.++...+.+++..   +...+.....+ ..    +......+|+|
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~D~v  258 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGPDVC  258 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence            35678999999987 8888888877 5546999999999999888742   11111111111 11    11112469999


Q ss_pred             EECccc-----------cccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          235 MDKGTL-----------DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       235 ~~~~~l-----------~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +..-.-           .++ +++..  +....+..+.++|+++|.++....
T Consensus       259 ld~vg~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         259 IDAVGMEAHGSPLHKAEQAL-LKLET--DRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             EECCCCcccccccccccccc-ccccc--CchHHHHHHHHHhccCCEEEEEcC
Confidence            874211           111 01111  112356888999999999988643

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.16  E-value=0.043  Score=48.23  Aligned_cols=80  Identities=14%  Similarity=0.310  Sum_probs=54.4

Q ss_pred             CCCCeEEEEccCccHHHHHHH--hcCCCcEEEEeCChHHHHHHHHHHHHc-CCC-ceEEEEc-cCCCC---c--cCCCcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELS--KQGFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLVD-DVLDT---K--LERQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la--~~g~~~v~gvD~s~~~i~~a~~~~~~~-~~~-~i~~~~~-D~~~~---~--~~~~fD  232 (343)
                      .++.++||||.|.--+--.+-  +.|+ +.+|.|+++.++..|+.+...+ ++. .|++... |-...   .  ..+.||
T Consensus        77 ~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd  155 (292)
T COG3129          77 GKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD  155 (292)
T ss_pred             cCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence            357799999988754432222  2355 8999999999999999998877 442 3554432 21111   1  157899


Q ss_pred             EEEECcccccc
Q 019324          233 LVMDKGTLDAI  243 (343)
Q Consensus       233 ~V~~~~~l~~i  243 (343)
                      +++||..++.-
T Consensus       156 ~tlCNPPFh~s  166 (292)
T COG3129         156 ATLCNPPFHDS  166 (292)
T ss_pred             eEecCCCcchh
Confidence            99999988644

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.071  Score=50.07  Aligned_cols=78  Identities=13%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC---------CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCC-cc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g---------~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~-fD  232 (343)
                      ..+..++|||.|.|.++..++...         ..++.-|++|+...+.=+++++...    ..+.........++. .-
T Consensus        76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~----~~~~~~~~~e~~p~~~~~  151 (370)
T COG1565          76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE----DLIRWVEWVEDLPKKFPG  151 (370)
T ss_pred             CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc----cchhHHHHHHhccccCce
Confidence            346789999999999988877631         3489999999999998888876543    111111111112333 44


Q ss_pred             EEEECccccccc
Q 019324          233 LVMDKGTLDAIG  244 (343)
Q Consensus       233 ~V~~~~~l~~i~  244 (343)
                      +|++|..+|++.
T Consensus       152 i~~~NElfDAlP  163 (370)
T COG1565         152 IVVSNELFDALP  163 (370)
T ss_pred             EEEechhhcccc
Confidence            566676666664

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=95.11  E-value=0.012  Score=53.18  Aligned_cols=105  Identities=18%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHH-------HHHHcCCCc---eEEEEccCCCCcc--CC-
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-------LANRDGFSC---IKFLVDDVLDTKL--ER-  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~-------~~~~~~~~~---i~~~~~D~~~~~~--~~-  229 (343)
                      ..+++|||+|||.|...+.....|...+...|++...++.-.-       .+....-++   ......++.++..  .+ 
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            4578999999999999999988876689999999887742221       000000011   1222221112221  23 


Q ss_pred             -CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          230 -QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       230 -~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                       .||+|.+..++..+    +  .....+......+++++|++++.
T Consensus       195 ~~ydlIlsSetiy~~----~--~~~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  195 THYDLILSSETIYSI----D--SLAVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             cchhhhhhhhhhhCc----c--hhhhhHhhhhhhcCCccchhhhh
Confidence             78888887766444    1  12122245667777888888774

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=94.96  E-value=0.67  Score=46.29  Aligned_cols=114  Identities=16%  Similarity=0.188  Sum_probs=75.0

Q ss_pred             CCCeEEEEccCccHHHHHHHhc---C--CCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCC-cc--CCCccE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ---G--FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDT-KL--ERQFQL  233 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~---g--~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~-~~--~~~fD~  233 (343)
                      +...|.|..||+|.++......   |  ...++|-+..+.+...++.++..++..  ......+|-... ..  ...||.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence            5679999999999998765432   2  136999999999999999987666542  333434443332 22  356999


Q ss_pred             EEECccccccc----------------cC--CCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          234 VMDKGTLDAIG----------------LH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       234 V~~~~~l~~i~----------------~~--~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      |+++..+....                .|  +.....-..++..+..+|++||...++-+..
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g  358 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG  358 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence            99887653310                01  1111223467788899999999876655443

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.86  E-value=0.27  Score=46.73  Aligned_cols=99  Identities=23%  Similarity=0.268  Sum_probs=64.4

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCC----CCccCCCccEEE
Q 019324          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVL----DTKLERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~----~~~~~~~fD~V~  235 (343)
                      .++.+|+-+|||+ |.++..+++. |+.+|+++|.++.-++.|++....   ..+..... +..    .......+|+++
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---~~~~~~~~~~~~~~~~~~t~g~g~D~vi  243 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---DVVVNPSEDDAGAEILELTGGRGADVVI  243 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---eEeecCccccHHHHHHHHhCCCCCCEEE
Confidence            3444999999996 5666666665 778999999999999999984321   11111111 110    111123699998


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .....             ...+..+.++++|||.+++.....
T Consensus       244 e~~G~-------------~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         244 EAVGS-------------PPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             ECCCC-------------HHHHHHHHHHhcCCCEEEEEeccC
Confidence            64321             125689999999999999865543

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.83  E-value=0.21  Score=49.17  Aligned_cols=78  Identities=12%  Similarity=0.152  Sum_probs=57.1

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------------
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------------  227 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------------  227 (343)
                      ..+++|+.||.|.+...+-..|+.-|.++|+++.+.+.-+.|+...  +....+..|+.+...                 
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~  165 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ  165 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCccccccccchhhhhhhhhc
Confidence            5699999999999999998888878899999999999888875311  233445566665431                 


Q ss_pred             -CCCccEEEECccccccc
Q 019324          228 -ERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i~  244 (343)
                       -..+|+++.......+.
T Consensus       166 ~~p~~DvL~gGpPCQ~FS  183 (467)
T PRK10458        166 HIPDHDVLLAGFPCQPFS  183 (467)
T ss_pred             cCCCCCEEEEcCCCCccc
Confidence             12579888776555443

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.21  E-value=0.29  Score=45.30  Aligned_cols=100  Identities=22%  Similarity=0.280  Sum_probs=66.5

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC--CCC------cc-CC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDT------KL-ER  229 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~--~~~------~~-~~  229 (343)
                      ....+.+||-+|+|. |.++...++. |+.+|+.+|+++..++.|++ +   |.+.+......-  ...      .. ..
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc
Confidence            447899999999996 4555555555 88899999999999999998 3   332222221111  010      01 24


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .+|+.+....++             ..++.....+++||.+++.....
T Consensus       242 ~~d~~~dCsG~~-------------~~~~aai~a~r~gGt~vlvg~g~  276 (354)
T KOG0024|consen  242 QPDVTFDCSGAE-------------VTIRAAIKATRSGGTVVLVGMGA  276 (354)
T ss_pred             CCCeEEEccCch-------------HHHHHHHHHhccCCEEEEeccCC
Confidence            588888754432             33477889999999988765444

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=94.14  E-value=0.13  Score=50.48  Aligned_cols=105  Identities=18%  Similarity=0.238  Sum_probs=73.1

Q ss_pred             CCeEEEEccCccHHHHHHHh---cC--CCcEEEEeCChHHHHHHHHHH-HHcCCCceEEEEccCCCCccC-CCccEEEEC
Q 019324          165 SWSVLDIGTGNGLLLQELSK---QG--FSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVDDVLDTKLE-RQFQLVMDK  237 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~---~g--~~~v~gvD~s~~~i~~a~~~~-~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~~  237 (343)
                      ...|+-+|.|-|-+.....+   .-  .-++++++-+|+|+-..+.+- ...+ .+++++.+|++++..+ .+.|++++ 
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-~~Vtii~~DMR~w~ap~eq~DI~VS-  445 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-NRVTIISSDMRKWNAPREQADIIVS-  445 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-CeeEEEeccccccCCchhhccchHH-
Confidence            45788899999976544433   21  127999999999998888732 2222 4799999999999864 78999886 


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..+..++...-   .. ..|..+-+.|||+|+.|=...
T Consensus       446 ELLGSFGDNEL---SP-ECLDG~q~fLkpdgIsIP~sY  479 (649)
T KOG0822|consen  446 ELLGSFGDNEL---SP-ECLDGAQKFLKPDGISIPSSY  479 (649)
T ss_pred             HhhccccCccC---CH-HHHHHHHhhcCCCceEccchh
Confidence            23333331112   22 467899999999998776433

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=93.88  E-value=0.29  Score=46.15  Aligned_cols=115  Identities=11%  Similarity=0.059  Sum_probs=59.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc------------C----C-CcEEEEeCChHHHHHHHHHHHHc-----CCCce--EEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ------------G----F-SDLTGVDYSEDAINLAQSLANRD-----GFSCI--KFL  218 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~------------g----~-~~v~gvD~s~~~i~~a~~~~~~~-----~~~~i--~~~  218 (343)
                      .+.-+|+|+||.+|..++.+...            +    . -+|+-.|+-.+=-...=+.+...     ...++  ..+
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv   94 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV   94 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred             CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence            45679999999999887766542            1    0 15777776543222221111111     01122  222


Q ss_pred             EccCCCC-ccCCCccEEEECccccccccCCCC--------------------------------hhhHHHHHHHHhhccC
Q 019324          219 VDDVLDT-KLERQFQLVMDKGTLDAIGLHPDG--------------------------------PLKRIMYWDSVSKLVA  265 (343)
Q Consensus       219 ~~D~~~~-~~~~~fD~V~~~~~l~~i~~~~~~--------------------------------~~~~~~~l~~~~~~Lk  265 (343)
                      .+.+-.- -++++.|++++...++++.--|..                                ..+...+|+.=.+-|+
T Consensus        95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv  174 (334)
T PF03492_consen   95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV  174 (334)
T ss_dssp             ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence            3333322 246899999999998888532211                                1233456666678899


Q ss_pred             CCcEEEEEecCC
Q 019324          266 PGGLLVITSCNS  277 (343)
Q Consensus       266 pgG~lii~~~~~  277 (343)
                      |||+++++....
T Consensus       175 ~GG~mvl~~~gr  186 (334)
T PF03492_consen  175 PGGRMVLTFLGR  186 (334)
T ss_dssp             EEEEEEEEEEE-
T ss_pred             cCcEEEEEEeec
Confidence            999999975543

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=93.44  E-value=0.58  Score=43.44  Aligned_cols=93  Identities=27%  Similarity=0.380  Sum_probs=60.4

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-------CccCCCcc
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-------TKLERQFQ  232 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-------~~~~~~fD  232 (343)
                      ..++.+||..||| .|..+..+++. |. +|++++.++...+.+++    .+..   .+..+-..       ....+.+|
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~D  234 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAGLGGGFD  234 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHhcCCCce
Confidence            3567889998876 47777777776 65 69999999998887754    2321   11111111       11235689


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +++.....             ...++.+.+.|+++|.++....
T Consensus       235 ~vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         235 VIFDFVGT-------------QPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             EEEECCCC-------------HHHHHHHHHHhhcCCEEEEECC
Confidence            88863211             1245788999999999987643

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=93.43  E-value=0.038  Score=52.64  Aligned_cols=62  Identities=18%  Similarity=0.184  Sum_probs=54.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDT  225 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~  225 (343)
                      .++..|.|+.||.|-++..++..++ .|++-|.++.+++..+.++..+.+.  +++.+..|+...
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            6789999999999999999999985 9999999999999999999888763  477777776543

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.19  E-value=0.61  Score=36.45  Aligned_cols=62  Identities=24%  Similarity=0.439  Sum_probs=47.1

Q ss_pred             CCCeEEEEccCcc-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEEC
Q 019324          164 SSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDK  237 (343)
Q Consensus       164 ~~~~VLDiGcG~G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~  237 (343)
                      ...+|.|+|-|-= ..+..|+++|+ .|+++|+.+.   .++        ..+++...|+++...  -...|+|.+.
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a~--------~g~~~v~DDitnP~~~iY~~A~lIYSi   77 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TAP--------EGLRFVVDDITNPNISIYEGADLIYSI   77 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cCc--------ccceEEEccCCCccHHHhhCccceeec
Confidence            3459999998765 35777888887 8999999877   111        378999999999764  3567888874

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=93.12  E-value=1.7  Score=36.55  Aligned_cols=105  Identities=12%  Similarity=0.149  Sum_probs=65.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~V~~~  237 (343)
                      ....+|+-|||=+-...+.-......+++-.|++.+.-.        .+ .+ .|..-|.....     +.++||+|++.
T Consensus        24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~-~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D   93 (162)
T PF10237_consen   24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FG-GD-EFVFYDYNEPEELPEELKGKFDVVVID   93 (162)
T ss_pred             CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cC-Cc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence            446799999997754444331122338999999865332        22 13 46666766542     24799999998


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                      ..+  +.     .+-..+....+..++|+++.+++.++......+.+
T Consensus        94 PPF--l~-----~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~  133 (162)
T PF10237_consen   94 PPF--LS-----EECLTKTAETIRLLLKPGGKIILCTGEEMEELIKK  133 (162)
T ss_pred             CCC--CC-----HHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHH
Confidence            877  31     23344555666777788898888766544333333

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=93.06  E-value=0.22  Score=45.95  Aligned_cols=114  Identities=21%  Similarity=0.213  Sum_probs=76.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-------CC--------------CcEEEEeCChH--HHHHHHHHHHHc---------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-------GF--------------SDLTGVDYSED--AINLAQSLANRD---------  210 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-------g~--------------~~v~gvD~s~~--~i~~a~~~~~~~---------  210 (343)
                      .+..+||-||.|.|.=...++..       ..              -.++.+|+.+.  .++.....+...         
T Consensus        85 ~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~  164 (315)
T PF11312_consen   85 KKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASA  164 (315)
T ss_pred             ccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccc
Confidence            45689999999998543333321       00              17999999964  444444433322         


Q ss_pred             ----CC----CceEEEEccCCCCccC--------CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          211 ----GF----SCIKFLVDDVLDTKLE--------RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       211 ----~~----~~i~~~~~D~~~~~~~--------~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                          ..    -++.|.+.|+.....+        ...++|...++++-+..  .......++|.++-..++||..|+|+.
T Consensus       165 ~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs--~s~~kTt~FLl~Lt~~~~~GslLLVvD  242 (315)
T PF11312_consen  165 ANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFS--TSISKTTKFLLRLTDICPPGSLLLVVD  242 (315)
T ss_pred             cccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHh--cChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence                01    1589999999987531        24677777777765532  224677789999999999999999975


Q ss_pred             cCCC
Q 019324          275 CNST  278 (343)
Q Consensus       275 ~~~~  278 (343)
                      ....
T Consensus       243 SpGS  246 (315)
T PF11312_consen  243 SPGS  246 (315)
T ss_pred             CCCC
Confidence            5443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.90  E-value=0.31  Score=45.91  Aligned_cols=96  Identities=20%  Similarity=0.254  Sum_probs=58.5

Q ss_pred             CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCc-cCCCccEEEECc
Q 019324          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~-~~~~fD~V~~~~  238 (343)
                      .++.+||-.||| .|.++..+++. |..+|+++|.++..++.+++.    |... +.....++.+.. ..+.+|+|+...
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid~~  243 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFEVS  243 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence            457899999875 34455556655 665799999999988888752    3221 111111111111 123588888632


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .-          .   ..+..+.++|++||++++...
T Consensus       244 G~----------~---~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        244 GH----------P---SSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CC----------H---HHHHHHHHHhhcCCEEEEEcc
Confidence            11          1   234778889999999998654

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=92.63  E-value=2.8  Score=37.54  Aligned_cols=115  Identities=16%  Similarity=0.181  Sum_probs=74.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHh----cCC-CcEEEEeCChHHHHHHHHHHHH-c-CCCceEEEEccCCCCc---cCCCcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSK----QGF-SDLTGVDYSEDAINLAQSLANR-D-GFSCIKFLVDDVLDTK---LERQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~----~g~-~~v~gvD~s~~~i~~a~~~~~~-~-~~~~i~~~~~D~~~~~---~~~~fD  232 (343)
                      ..+.+.+|+|.|+..-+..|..    .|. .+++.+|+|...+....+.+.. . ++ .+.-+++|....-   +...--
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~~~~~R  155 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELPRGGRR  155 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhcccCCCeE
Confidence            4578999999999976555544    343 3899999999988766554332 2 22 4666777765421   122222


Q ss_pred             EE-EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324          233 LV-MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  283 (343)
Q Consensus       233 ~V-~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~  283 (343)
                      ++ +...++..     -.+.....++..+...|+||-++++-.-.....+.+
T Consensus       156 l~~flGStlGN-----~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~L  202 (321)
T COG4301         156 LFVFLGSTLGN-----LTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERL  202 (321)
T ss_pred             EEEEecccccC-----CChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHH
Confidence            33 33334433     346677789999999999999999965555444433

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.52  E-value=0.032  Score=45.94  Aligned_cols=45  Identities=13%  Similarity=0.239  Sum_probs=37.9

Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++.|+|++..+++|+.+     ..-...++++++.|||||+|-+..|..
T Consensus        45 dns~d~iyaeHvlEHlt~-----~Eg~~alkechr~Lrp~G~LriAvPdl   89 (185)
T COG4627          45 DNSVDAIYAEHVLEHLTY-----DEGTSALKECHRFLRPGGKLRIAVPDL   89 (185)
T ss_pred             CcchHHHHHHHHHHHHhH-----HHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence            689999999999999863     455678899999999999999976543

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=92.03  E-value=0.88  Score=40.95  Aligned_cols=116  Identities=13%  Similarity=0.115  Sum_probs=67.3

Q ss_pred             CCCeEEEEccCccHHHHHHHh----cC--CCcEEEEeCC--------------------------hHHHHHHHHHHHHcC
Q 019324          164 SSWSVLDIGTGNGLLLQELSK----QG--FSDLTGVDYS--------------------------EDAINLAQSLANRDG  211 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~----~g--~~~v~gvD~s--------------------------~~~i~~a~~~~~~~~  211 (343)
                      -+..|+|+||=.|..+..++.    .+  ..+++++|-=                          ....+..++++...+
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            356899999999976654432    12  2368887732                          124566666776666


Q ss_pred             C--CceEEEEccCCCCccC---CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324          212 F--SCIKFLVDDVLDTKLE---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       212 ~--~~i~~~~~D~~~~~~~---~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~  286 (343)
                      +  +++.++.+.+.+..+.   ..+-++.       +  +-+-.......|+.++..|.|||++++-.++.  ..-.+-+
T Consensus       154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~-------l--D~DlYesT~~aLe~lyprl~~GGiIi~DDY~~--~gcr~Av  222 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDAPIERIALLH-------L--DCDLYESTKDALEFLYPRLSPGGIIIFDDYGH--PGCRKAV  222 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC-TT--EEEEE-------E-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT--HHHHHHH
T ss_pred             CCcccEEEECCcchhhhccCCCccEEEEE-------E--eccchHHHHHHHHHHHhhcCCCeEEEEeCCCC--hHHHHHH
Confidence            5  4799999998654322   2222222       2  22333566678899999999999999988777  3333344


Q ss_pred             Hhhh
Q 019324          287 SNLS  290 (343)
Q Consensus       287 ~~~~  290 (343)
                      .+|.
T Consensus       223 deF~  226 (248)
T PF05711_consen  223 DEFR  226 (248)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=91.75  E-value=0.89  Score=39.00  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc----CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQ  230 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~  230 (343)
                      .++..|+|+|.--|..++..+..    |. .+|+++|++-...+-+...     .++|.|+.++-.+...       .+.
T Consensus        68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~  142 (237)
T COG3510          68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNE  142 (237)
T ss_pred             cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence            56789999999998877766653    41 2899999997665444332     3689999999887642       222


Q ss_pred             ccEEE-ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          231 FQLVM-DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       231 fD~V~-~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +--|+ +-..-++       .....+.|+....+|.-|.++++...+
T Consensus       143 y~kIfvilDsdHs-------~~hvLAel~~~~pllsaG~Y~vVeDs~  182 (237)
T COG3510         143 YPKIFVILDSDHS-------MEHVLAELKLLAPLLSAGDYLVVEDSN  182 (237)
T ss_pred             CCcEEEEecCCch-------HHHHHHHHHHhhhHhhcCceEEEeccc
Confidence            33333 3222222       255567778889999999998886443

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.70  E-value=0.67  Score=42.98  Aligned_cols=87  Identities=23%  Similarity=0.248  Sum_probs=54.8

Q ss_pred             CCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      ++.+||-+||| .|.++..+++. |+..|+++|.++..++.++..    .     ++  |..+. ....+|+|+....- 
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~-~~~g~Dvvid~~G~-  210 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD-PRRDYRAIYDASGD-  210 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc-cCCCCCEEEECCCC-
Confidence            46689988875 45566666665 775688889888776666531    1     11  11110 12468988864221 


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                                  ...++.+.+.|+++|++++...
T Consensus       211 ------------~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       211 ------------PSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             ------------HHHHHHHHHhhhcCcEEEEEee
Confidence                        1235788899999999997643

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.53  E-value=0.46  Score=46.38  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=82.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cCCCccE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LERQFQL  233 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~~~fD~  233 (343)
                      ....++|-+|-|.|.+...+... +...+++++++|.|++.++..+....-.+.++...|..+.-        .+..||+
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence            45678999999999998888665 54599999999999999998764332223344444443321        2467998


Q ss_pred             EEEC-c--cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC---hHHHHHHHHhhh
Q 019324          234 VMDK-G--TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST---KDELVHEVSNLS  290 (343)
Q Consensus       234 V~~~-~--~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~---~~~~~~~~~~~~  290 (343)
                      ++.. .  -.+.+.+.|.. --...++..+...|.|.|.+++-...++   ..++...+.+..
T Consensus       374 l~~dvds~d~~g~~~pp~~-fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf  435 (482)
T KOG2352|consen  374 LMVDVDSKDSHGMQCPPPA-FVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVF  435 (482)
T ss_pred             EEEECCCCCcccCcCCchH-HHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhh
Confidence            8752 1  12233322222 2344678999999999999998443332   345555554433

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=91.50  E-value=1.4  Score=41.45  Aligned_cols=93  Identities=16%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGN-GLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      .++.+||-+|||. |.++..+++.  |..+|+++|.++.-++.+++    .+.  . ....+..   ....+|+|+....
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~~~~---~~~g~d~viD~~G  231 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLIDDIP---EDLAVDHAFECVG  231 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehhhhh---hccCCcEEEECCC
Confidence            5688999999863 3344455543  44589999999988887764    121  1 1111111   1124888886321


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      -          ......+....++|++||++++...
T Consensus       232 ~----------~~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         232 G----------RGSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             C----------CccHHHHHHHHHhCcCCcEEEEEee
Confidence            0          0011345788899999999987543

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.46  E-value=1.1  Score=42.43  Aligned_cols=95  Identities=19%  Similarity=0.320  Sum_probs=56.3

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeC---ChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDY---SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~---s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~  237 (343)
                      .++.+||-+|||. |.++..+++. |. +|++++.   ++.-.+.+++    .|...+.....+..+....+.+|+|+..
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~~~~~~~~d~vid~  245 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAEVKLVGEFDLIIEA  245 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhhhhhcCCCCEEEEC
Confidence            4678999999863 4556666665 66 7999987   5666666654    3322111111111110112468888863


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..-          .   ..+....++|++||.+++...
T Consensus       246 ~g~----------~---~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         246 TGV----------P---PLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             cCC----------H---HHHHHHHHHccCCcEEEEEec
Confidence            211          1   245788899999999987543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.20  E-value=4.4  Score=35.46  Aligned_cols=107  Identities=15%  Similarity=0.110  Sum_probs=63.3

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      ++++||-.|++.|   .+...+++.|+ +|++++-++.....+.+.....+  ++.++.+|+.+...           -+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN   80 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4678999998644   23444555676 89999999877766544443322  67889999987531           13


Q ss_pred             CccEEEECccccccccCCCCh-----------hhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGP-----------LKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~-----------~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ..|.++.+....... .....           .....+++.+.+.++++|.+++.+
T Consensus        81 ~id~ii~~ag~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         81 AIDGLVVTVGGYVED-TVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             CCCEEEEcCCCcCCC-chHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            468777654321100 00000           011234566667777888877754

>PTZ00357 methyltransferase; Provisional

Probab=91.13  E-value=1.4  Score=44.98  Aligned_cols=99  Identities=14%  Similarity=0.195  Sum_probs=61.6

Q ss_pred             CeEEEEccCccHHHHHHHh----cCCC-cEEEEeCChHHHHHHHHHHH---HcCC------CceEEEEccCCCCccC---
Q 019324          166 WSVLDIGTGNGLLLQELSK----QGFS-DLTGVDYSEDAINLAQSLAN---RDGF------SCIKFLVDDVLDTKLE---  228 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~----~g~~-~v~gvD~s~~~i~~a~~~~~---~~~~------~~i~~~~~D~~~~~~~---  228 (343)
                      ..|+-+|+|-|-+.....+    .+.. +|++|+-++.++...+.+..   ....      ..|+++..|+..+..+   
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            4689999999976444433    2433 89999999775545444421   2210      2489999999998532   


Q ss_pred             ---------CCccEEEECccccccccCCCChhhHHHHHHHHhhccCC----CcE
Q 019324          229 ---------RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP----GGL  269 (343)
Q Consensus       229 ---------~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkp----gG~  269 (343)
                               +++|+|++ ..|..++...-.+    ..|..+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSP----ECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSP----ECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehH-hhhcccccccCCH----HHHHHHHHhhhhhcccccc
Confidence                     26999997 2333333222222    355677777776    776

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=90.91  E-value=0.29  Score=39.04  Aligned_cols=64  Identities=22%  Similarity=0.416  Sum_probs=39.1

Q ss_pred             CCCCeEEEEccCcc-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~  238 (343)
                      .+..+|.|+|-|.= ..+..|.+.|+ .|+++|+.+.   .+.        ..+.++..|+.+..+  -...|+|++..
T Consensus        12 ~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a~--------~g~~~v~DDif~P~l~iY~~a~lIYSiR   78 (127)
T PF03686_consen   12 NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KAP--------EGVNFVVDDIFNPNLEIYEGADLIYSIR   78 (127)
T ss_dssp             S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES
T ss_pred             CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---ccc--------cCcceeeecccCCCHHHhcCCcEEEEeC
Confidence            34569999999875 46777777886 8999999988   111        267899999998764  25789999854

; PDB: 2K4M_A.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.55  E-value=1.2  Score=34.48  Aligned_cols=94  Identities=14%  Similarity=0.188  Sum_probs=59.5

Q ss_pred             cCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEECccccccc
Q 019324          173 TGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       173 cG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~~~l~~i~  244 (343)
                      ||.|.++..+++.   +...|+.+|.++..++.+++       ..+.++.+|..+...     -...+.+++...-    
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~----   72 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------EGVEVIYGDATDPEVLERAGIEKADAVVILTDD----   72 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------TTSEEEES-TTSHHHHHHTTGGCESEEEEESSS----
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------cccccccccchhhhHHhhcCccccCEEEEccCC----
Confidence            5666677666654   33379999999999888876       357899999988642     2567777763211    


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  283 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~  283 (343)
                            ......+....+.+.|...++.........+.+
T Consensus        73 ------d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l  105 (116)
T PF02254_consen   73 ------DEENLLIALLARELNPDIRIIARVNDPENAELL  105 (116)
T ss_dssp             ------HHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence                  122233455567778888888766655444433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=90.45  E-value=0.85  Score=40.57  Aligned_cols=92  Identities=26%  Similarity=0.369  Sum_probs=59.0

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC--------ccCCCcc
Q 019324          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--------KLERQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~--------~~~~~fD  232 (343)
                      .++.+||..|+|. |..+..+++. | .+|++++.++...+.+++.    +...  ++  +....        ...+.+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~--~~--~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADH--VI--DYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCce--ec--cCCcCCHHHHHHHhcCCCCC
Confidence            5678999999985 6666666665 5 4899999998877777543    2111  11  11111        1135689


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++....-          .   ..+..+.+.|+++|.++.....
T Consensus       204 ~vi~~~~~----------~---~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         204 VVIDAVGG----------P---ETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             EEEECCCC----------H---HHHHHHHHhcccCCEEEEEccC
Confidence            99864221          0   2347788899999999886543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=90.36  E-value=0.57  Score=37.11  Aligned_cols=84  Identities=27%  Similarity=0.342  Sum_probs=56.7

Q ss_pred             CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCCccEEEECcccccccc
Q 019324          174 GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQFQLVMDKGTLDAIGL  245 (343)
Q Consensus       174 G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~fD~V~~~~~l~~i~~  245 (343)
                      |.|.++..+++. | .+|+++|.++.-++.+++.    |..  .++..+-.+..       ....+|+|+..-.-     
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-----   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-----   68 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----ccc--ccccccccccccccccccccccceEEEEecCc-----
Confidence            568888888887 7 6999999999998888763    211  12222111110       12479999874321     


Q ss_pred             CCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          246 HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       246 ~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                              ...++...++|+|+|.+++.....
T Consensus        69 --------~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 --------GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             --------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             --------HHHHHHHHHHhccCCEEEEEEccC
Confidence                    135688999999999999976654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.08  E-value=1.4  Score=42.02  Aligned_cols=108  Identities=13%  Similarity=0.134  Sum_probs=74.5

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHH-------HHcCC--CceEEEEccCCCCcc----
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA-------NRDGF--SCIKFLVDDVLDTKL----  227 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~-------~~~~~--~~i~~~~~D~~~~~~----  227 (343)
                      +.++....|+|.|.|.+...++.. ++..-.|+++....-+.+..+.       ...|-  ..++.+++++.....    
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI  269 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI  269 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence            367889999999999998888776 4557889988877666665433       23332  247888888877542    


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ....++|+.+.+.  +  +    .+...-+.++..-+++|-+++-..+-.
T Consensus       270 ~~eatvi~vNN~~--F--d----p~L~lr~~eil~~ck~gtrIiS~~~L~  311 (419)
T KOG3924|consen  270 QTEATVIFVNNVA--F--D----PELKLRSKEILQKCKDGTRIISSKPLV  311 (419)
T ss_pred             hhcceEEEEeccc--C--C----HHHHHhhHHHHhhCCCcceEecccccc
Confidence            4578888887653  1  1    122223468888899999988754433

>PRK06701 short chain dehydrogenase; Provisional

Probab=90.01  E-value=5.4  Score=36.57  Aligned_cols=110  Identities=15%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCCh-HHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~-~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|-.|++.|   .++..++++|+ +|+.++.++ ...+.........+ .++.++.+|+.+...           
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            44678999987665   35556667786 788888764 33333333444334 368889999887531           


Q ss_pred             CCCccEEEECcccccc--ccCCCCh-----------hhHHHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLDAI--GLHPDGP-----------LKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i--~~~~~~~-----------~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      -+.+|+++.+......  .+.....           .....+++.+.+.++++|.+++.+
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is  181 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG  181 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            1368988876543211  0111111           122345566677777778777754

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=89.74  E-value=0.7  Score=42.14  Aligned_cols=94  Identities=20%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC----CCCccCCCccEEEE
Q 019324          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV----LDTKLERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~----~~~~~~~~fD~V~~  236 (343)
                      .++.+||-+|+| .|.++..+++. |...|+++|.++.-.+.+++.    |...+ +...+.    ........+|+|+.
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~-i~~~~~~~~~~~~~~~~g~d~vid  193 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATAL-AEPEVLAERQGGLQNGRGVDVALE  193 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEe-cCchhhHHHHHHHhCCCCCCEEEE
Confidence            467899999875 33444555554 664599999998888777652    32110 100110    01111235888886


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ...-             ...++.+.++|+++|++++..
T Consensus       194 ~~G~-------------~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       194 FSGA-------------TAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             CCCC-------------hHHHHHHHHHhcCCCEEEEec
Confidence            3211             123477889999999998865

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=89.70  E-value=2.6  Score=39.42  Aligned_cols=91  Identities=14%  Similarity=0.069  Sum_probs=56.3

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      ..++.+||-.|+| .|.++..+++. |. +|++++.++.-.+.+++    .|...+  +  |..+. ..+.+|+++....
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~v--i--~~~~~-~~~~~d~~i~~~~  232 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAASA--G--GAYDT-PPEPLDAAILFAP  232 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCcee--c--ccccc-CcccceEEEECCC
Confidence            3668899999975 33445555555 65 69999999888777765    333211  1  11111 1235787654221


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .          .   ..+....+.|++||++++...
T Consensus       233 ~----------~---~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       233 A----------G---GLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             c----------H---HHHHHHHHhhCCCcEEEEEec
Confidence            1          1   245788899999999988553

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=89.60  E-value=0.65  Score=43.92  Aligned_cols=46  Identities=28%  Similarity=0.433  Sum_probs=38.2

Q ss_pred             hccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHH
Q 019324          160 DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (343)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~  206 (343)
                      ....+-..|.|+|.|.|.++..+.-+ |. .|+|||-|....+.|++.
T Consensus       149 ~~f~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  149 SDFTGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             HhhcCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHH
Confidence            34466789999999999999999876 43 899999998888887753

>PRK08265 short chain dehydrogenase; Provisional

Probab=89.38  E-value=7.1  Score=34.93  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=48.2

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++...+..   + .++.++.+|+.+...           -+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   79 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFG   79 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3568898887555   34556666787 8999999876554443322   2 368889999987631           14


Q ss_pred             CccEEEECcc
Q 019324          230 QFQLVMDKGT  239 (343)
Q Consensus       230 ~fD~V~~~~~  239 (343)
                      ..|+++.+..
T Consensus        80 ~id~lv~~ag   89 (261)
T PRK08265         80 RVDILVNLAC   89 (261)
T ss_pred             CCCEEEECCC
Confidence            6899988754

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=89.05  E-value=2  Score=42.88  Aligned_cols=95  Identities=17%  Similarity=0.215  Sum_probs=58.2

Q ss_pred             CCCCeEEEEccCcc-HHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----------------
Q 019324          163 LSSWSVLDIGTGNG-LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----------------  224 (343)
Q Consensus       163 ~~~~~VLDiGcG~G-~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~----------------  224 (343)
                      .++.+||-+|||.= ..+..++.. |+ .|+++|.++..++.++.    .|   .+++..|..+                
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lG---a~~v~v~~~e~g~~~~gYa~~~s~~~  233 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MG---AEFLELDFKEEGGSGDGYAKVMSEEF  233 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cC---CeEEeccccccccccccceeecCHHH
Confidence            46789999999864 444444444 65 69999999998777765    22   2333333211                


Q ss_pred             -------Cc-cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          225 -------TK-LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       225 -------~~-~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                             .. .-..+|+|+....+..-       ..+..+.+++.+.+|||+.++-
T Consensus       234 ~~~~~~~~~e~~~~~DIVI~TalipG~-------~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       234 IAAEMELFAAQAKEVDIIITTALIPGK-------PAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcccCCC-------CCCeeehHHHHhhCCCCCEEEE
Confidence                   00 02469999875432211       1112244778899999988764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05876 short chain dehydrogenase; Provisional

Probab=88.99  E-value=6.9  Score=35.50  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=52.4

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+. ++.++.+|+.+...           -+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            3568888888765   34556666787 799999998777666555544442 68889999987531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        83 ~id~li~nAg~   93 (275)
T PRK05876         83 HVDVVFSNAGI   93 (275)
T ss_pred             CCCEEEECCCc
Confidence            68999987654

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=88.88  E-value=0.82  Score=45.84  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---------CCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------~~~f  231 (343)
                      .+...|||+||..|.++.-.++. +. .-|+|+|+-|-           ..+++|..++.|++....         .-+.
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~a  111 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKTWKA  111 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence            56789999999999999988876 32 37999999653           122577777777765421         2356


Q ss_pred             cEEEECccccccccCC--C---ChhhHHHHHHHHhhccCCCcEEEEEe-cCCChHHHHHHH
Q 019324          232 QLVMDKGTLDAIGLHP--D---GPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEV  286 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~--~---~~~~~~~~l~~~~~~LkpgG~lii~~-~~~~~~~~~~~~  286 (343)
                      |+|+..+.-. ++..+  +   ........++-+...|+.||.++--. .+.....++..+
T Consensus       112 dvVLhDgapn-Vg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~  171 (780)
T KOG1098|consen  112 DVVLHDGAPN-VGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVF  171 (780)
T ss_pred             cEEeecCCCc-cchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHH
Confidence            8888754321 11000  0   01222345677788899999966633 333344444433

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=88.86  E-value=4.7  Score=33.95  Aligned_cols=107  Identities=14%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             EccCccHHHHHHHhc-C-CCcEEEEeCChHH--HHHH---HHHHHHcCCCceE-EEEccCCCCcc-----CCCccEEEEC
Q 019324          171 IGTGNGLLLQELSKQ-G-FSDLTGVDYSEDA--INLA---QSLANRDGFSCIK-FLVDDVLDTKL-----ERQFQLVMDK  237 (343)
Q Consensus       171 iGcG~G~~~~~la~~-g-~~~v~gvD~s~~~--i~~a---~~~~~~~~~~~i~-~~~~D~~~~~~-----~~~fD~V~~~  237 (343)
                      +|=|+=.++..|++. + ...++++-++...  .+..   ..++......++. ..-.|++++..     ...||.|+-|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            455555666677766 4 3477777666442  2222   2333332212232 34457766542     4789999988


Q ss_pred             ccccccccCCC--------ChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          238 GTLDAIGLHPD--------GPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       238 ~~l~~i~~~~~--------~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      .+-  +.....        ...-+..++..+.++|+++|.+.++......
T Consensus        83 FPH--~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p  130 (166)
T PF10354_consen   83 FPH--VGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP  130 (166)
T ss_pred             CCC--CCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence            653  321110        0123457889999999999999998877755

>PRK07109 short chain dehydrogenase; Provisional

Probab=88.66  E-value=7  Score=36.70  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             CCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .+++||-.|++.|.   ++..+++.|+ +|+.++-++..++...+.+...+. ++.++.+|+.+...           -+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            45688888876552   4455666786 799999998887777666655553 68889999987531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      .+|+++.+...
T Consensus        85 ~iD~lInnAg~   95 (334)
T PRK07109         85 PIDTWVNNAMV   95 (334)
T ss_pred             CCCEEEECCCc
Confidence            78999987643

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=88.59  E-value=3.8  Score=38.72  Aligned_cols=97  Identities=18%  Similarity=0.101  Sum_probs=57.9

Q ss_pred             cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCC----CccCCCccEE
Q 019324          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQLV  234 (343)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~----~~~~~~fD~V  234 (343)
                      ..++.+||-.|||. |..+..+++. |...|+++|.++.-.+.+++    .|.+. +.....+..+    ......+|+|
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~v  249 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADVV  249 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence            46788999998752 4455556665 66469999999998888864    23211 1111111110    0112358888


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +....-          .   ..+....+.|++||++++...
T Consensus       250 id~~g~----------~---~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       250 IDAVGR----------P---ETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             EECCCC----------H---HHHHHHHHHhccCCEEEEECC
Confidence            863211          1   234677889999999987643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK12939 short chain dehydrogenase; Provisional

Probab=88.51  E-value=7  Score=34.38  Aligned_cols=73  Identities=12%  Similarity=0.047  Sum_probs=48.5

Q ss_pred             CCCeEEEEccCccHHHH----HHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~----~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      +++++|-.|++ |.++.    .++++|+ +|++++-++..+....+.....+ .++.++.+|+.+...           -
T Consensus         6 ~~~~vlItGa~-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGAA-RGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46788877764 44444    4455676 79999988877666655554433 368899999987531           1


Q ss_pred             CCccEEEECcc
Q 019324          229 RQFQLVMDKGT  239 (343)
Q Consensus       229 ~~fD~V~~~~~  239 (343)
                      +..|+|+.+..
T Consensus        83 ~~id~vi~~ag   93 (250)
T PRK12939         83 GGLDGLVNNAG   93 (250)
T ss_pred             CCCCEEEECCC
Confidence            46898887653

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.45  E-value=11  Score=33.76  Aligned_cols=75  Identities=17%  Similarity=0.156  Sum_probs=47.4

Q ss_pred             CCCCeEEEEccCcc-H----HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNG-L----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G-~----~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      ..++++|-.|+++| .    ++..+++.|+ +|+.++.+....+.+++.....+  .+.++.+|+.+...          
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~   84 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAE   84 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHH
Confidence            34678999998752 3    4555666676 78888888654433333332222  34578889887531          


Q ss_pred             -CCCccEEEECccc
Q 019324          228 -ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -~~~fD~V~~~~~l  240 (343)
                       -+..|+++.+..+
T Consensus        85 ~~g~ld~lv~nAg~   98 (258)
T PRK07533         85 EWGRLDFLLHSIAF   98 (258)
T ss_pred             HcCCCCEEEEcCcc
Confidence             2578999987644

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.37  E-value=2.9  Score=40.66  Aligned_cols=88  Identities=8%  Similarity=0.065  Sum_probs=55.0

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++++|+-+|||. |.....+++. |. +|+.+|.++.-...|+.    .|.   ...  +..+  .-...|+|+....-
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e--~v~~aDVVI~atG~  267 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY---EVM--TMEE--AVKEGDIFVTTTGN  267 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC---EEc--cHHH--HHcCCCEEEECCCC
Confidence            5789999999996 4444434443 76 79999999887777664    332   111  1111  11357988863211


Q ss_pred             cccccCCCChhhHHHHHH-HHhhccCCCcEEEEEec
Q 019324          241 DAIGLHPDGPLKRIMYWD-SVSKLVAPGGLLVITSC  275 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~-~~~~~LkpgG~lii~~~  275 (343)
                                .   ..+. ...+.+|+||+++....
T Consensus       268 ----------~---~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         268 ----------K---DIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             ----------H---HHHHHHHHhcCCCCcEEEEeCC
Confidence                      1   1233 45889999999987653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.25  E-value=3.6  Score=38.81  Aligned_cols=95  Identities=17%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEc-cCCCC---ccCCCccE
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD-DVLDT---KLERQFQL  233 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~-D~~~~---~~~~~fD~  233 (343)
                      ..++.+||-.|+  |.|.++..+++. |. +|++++.++.-.+.+++.   .|... +..... ++.+.   ...+.+|+
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gvD~  231 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGIDI  231 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence            367889999998  477788878776 65 799999998877776532   23221 111101 11110   01235888


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+....           .   ..+....++|++||++++..
T Consensus       232 v~d~vG-----------~---~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        232 YFDNVG-----------G---DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             EEECCC-----------H---HHHHHHHHHhccCCEEEEEC
Confidence            886321           1   24478889999999998753

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=87.99  E-value=0.92  Score=41.95  Aligned_cols=72  Identities=19%  Similarity=0.290  Sum_probs=50.1

Q ss_pred             EEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCC--------CccCCCccEEEE
Q 019324          168 VLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD--------TKLERQFQLVMD  236 (343)
Q Consensus       168 VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~--------~~~~~~fD~V~~  236 (343)
                      =+|||.|...+--.+-..  ++ ...++|++...+..|+.+...+++. .+.+++....+        ...+..||.+.|
T Consensus       106 GiDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc  184 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC  184 (419)
T ss_pred             eeeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence            368888876554444322  33 7999999999999999999988873 46665553322        112346999999


Q ss_pred             Cccc
Q 019324          237 KGTL  240 (343)
Q Consensus       237 ~~~l  240 (343)
                      |..+
T Consensus       185 NPPF  188 (419)
T KOG2912|consen  185 NPPF  188 (419)
T ss_pred             CCch
Confidence            9765

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=87.99  E-value=9.2  Score=34.69  Aligned_cols=106  Identities=12%  Similarity=0.045  Sum_probs=70.3

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCC-hHHHHHHHHHHHHcCC---CceEEEEccCCCCc--------c-CCCc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGF---SCIKFLVDDVLDTK--------L-ERQF  231 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s-~~~i~~a~~~~~~~~~---~~i~~~~~D~~~~~--------~-~~~f  231 (343)
                      ...|+.+|||-=.-...+... . .+.-+|++ |.+++.-++.+...+.   .+..++..|+....        + ....
T Consensus        82 ~~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p  159 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP  159 (260)
T ss_pred             CcEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence            346999999987766666433 2 34445554 4455555555554332   37889999987211        1 1234


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      -++++-+++.++.     ......+++.+.+...||+.+++...+.
T Consensus       160 tl~i~EGvl~YL~-----~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       160 TAWLWEGLLMYLT-----EEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             eeeeecchhhcCC-----HHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            5788888887773     4566788899998888999999976554

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=87.95  E-value=4.3  Score=36.48  Aligned_cols=93  Identities=23%  Similarity=0.251  Sum_probs=55.9

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+||-.|||. |..+..+++. |..+|++++.++...+.+++.-.   ...+.....   .......+|+|+.....
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~---~~~~~~~~~---~~~~~~~~d~vl~~~~~  169 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGP---ADPVAADTA---DEIGGRGADVVIEASGS  169 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCC---Cccccccch---hhhcCCCCCEEEEccCC
Confidence            5678899888764 5556666665 65349999999888876665310   111110000   01123468888863211


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                                .   ..+....+.|+++|.++...
T Consensus       170 ----------~---~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         170 ----------P---SALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             ----------h---HHHHHHHHHhcCCcEEEEEe
Confidence                      0   23477888999999998754

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK13699 putative methylase; Provisional

Probab=87.91  E-value=1.4  Score=39.19  Aligned_cols=72  Identities=10%  Similarity=0.137  Sum_probs=43.7

Q ss_pred             eEEEEccCCCC---ccCCCccEEEECccccccccC--------CCC-hhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324          215 IKFLVDDVLDT---KLERQFQLVMDKGTLDAIGLH--------PDG-PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  282 (343)
Q Consensus       215 i~~~~~D~~~~---~~~~~fD~V~~~~~l~~i~~~--------~~~-~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  282 (343)
                      ++++++|+.+.   -+++++|+|+....... ...        .+. ..-....+.+++|+|||||.+++.........+
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i-~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~   80 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLV-GFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRF   80 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCccc-ccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHH
Confidence            35677887664   23689999998876631 100        010 112347789999999999988864433333444


Q ss_pred             HHHHH
Q 019324          283 VHEVS  287 (343)
Q Consensus       283 ~~~~~  287 (343)
                      ...++
T Consensus        81 ~~al~   85 (227)
T PRK13699         81 MAAWK   85 (227)
T ss_pred             HHHHH
Confidence            44443

>PRK11524 putative methyltransferase; Provisional

Probab=87.83  E-value=1.2  Score=40.86  Aligned_cols=62  Identities=10%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             ceEEEEccCCCCc---cCCCccEEEECccccccc-c-CC-C--Ch----hhHHHHHHHHhhccCCCcEEEEEec
Q 019324          214 CIKFLVDDVLDTK---LERQFQLVMDKGTLDAIG-L-HP-D--GP----LKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       214 ~i~~~~~D~~~~~---~~~~fD~V~~~~~l~~i~-~-~~-~--~~----~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +..++++|+.+..   .+++||+|+++..+..-. . .. +  ..    .-...++.++.++|||||.+++...
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            4578889988742   367999999987763210 0 00 0  00    1124688999999999999998633

>PRK06194 hypothetical protein; Provisional

Probab=87.60  E-value=9.1  Score=34.63  Aligned_cols=74  Identities=18%  Similarity=0.189  Sum_probs=49.9

Q ss_pred             CCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCC
Q 019324          165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ  230 (343)
Q Consensus       165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~  230 (343)
                      +++||-.|++.|   .++..|+++|+ +|+.+|.++..++...+.....+ .++.++.+|+.+...           .+.
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG-AEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            568887776544   24445666676 79999998777666555444434 268889999987531           135


Q ss_pred             ccEEEECccc
Q 019324          231 FQLVMDKGTL  240 (343)
Q Consensus       231 fD~V~~~~~l  240 (343)
                      .|+|+.+...
T Consensus        84 id~vi~~Ag~   93 (287)
T PRK06194         84 VHLLFNNAGV   93 (287)
T ss_pred             CCEEEECCCC
Confidence            7999987654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=87.58  E-value=12  Score=33.22  Aligned_cols=76  Identities=17%  Similarity=0.227  Sum_probs=51.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..+++||-.|+..|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           -
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG-LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            34678998886433   23444555676 79999999887766666555444 268889999987531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        86 ~~~d~li~~ag~   97 (255)
T PRK07523         86 GPIDILVNNAGM   97 (255)
T ss_pred             CCCCEEEECCCC
Confidence            468998887543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=87.42  E-value=1.1  Score=42.73  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=57.7

Q ss_pred             cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCC-c--cCCCccEEE
Q 019324          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT-K--LERQFQLVM  235 (343)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~-~--~~~~fD~V~  235 (343)
                      ..++.+||-.|+|. |.++..+++. |...|+++|.++.-.+.+++    .|... +.....|..+. .  ..+.+|+|+
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vi  264 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDYAF  264 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCEEE
Confidence            35678899998752 4455555555 66579999999998888865    23211 11111111100 0  123688888


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ....-             ...+....++|+++|.+++...
T Consensus       265 d~~G~-------------~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         265 EMAGS-------------VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             ECCCC-------------hHHHHHHHHHHhcCCEEEEEcc
Confidence            63211             0234777889999999887543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=87.34  E-value=2.3  Score=39.67  Aligned_cols=92  Identities=20%  Similarity=0.350  Sum_probs=57.4

Q ss_pred             CCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc---cCCCCcc-CCCccEEEEC
Q 019324          164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLDTKL-ERQFQLVMDK  237 (343)
Q Consensus       164 ~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~---D~~~~~~-~~~fD~V~~~  237 (343)
                      ++.+||-.|||. |..+..+++. |...+++++.++...+.+++.    +..  .++..   ++..... .+.+|+++..
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~--~vi~~~~~~~~~~~~~~~~vd~vld~  238 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD--ETVNLARDPLAAYAADKGDFDVVFEA  238 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC--EEEcCCchhhhhhhccCCCccEEEEC
Confidence            678899988875 5666666665 654799999998888866552    221  11111   1111111 2358988864


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ...             ...++.+.+.|+++|+++...
T Consensus       239 ~g~-------------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         239 SGA-------------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             CCC-------------HHHHHHHHHHHhcCCEEEEEe
Confidence            221             123478889999999998754

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK08589 short chain dehydrogenase; Validated

Probab=87.32  E-value=13  Score=33.59  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      +++++|-.|++.|   .++..|++.|+ +|+.++.+ ..++...+.+...+ .++.++.+|+.+...           -+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNG-GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4668998888766   34556777786 89999998 44444443343333 268889999887531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        82 ~id~li~~Ag~   92 (272)
T PRK08589         82 RVDVLFNNAGV   92 (272)
T ss_pred             CcCEEEECCCC
Confidence            68999987644

>PRK08324 short chain dehydrogenase; Validated

Probab=87.13  E-value=6.6  Score=40.83  Aligned_cols=108  Identities=16%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      ++++||-.|++.|   .++..+++.|+ +|+.+|.++..++.+.+.+...  .++.++.+|+.+...           -+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4578998887444   23445556676 8999999988776665544322  368889999887531           14


Q ss_pred             CccEEEECccccccc-cCCCChh-----------hHHHHHHHHhhccCC---CcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIG-LHPDGPL-----------KRIMYWDSVSKLVAP---GGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~-~~~~~~~-----------~~~~~l~~~~~~Lkp---gG~lii~~  274 (343)
                      .+|+|+.+....... +......           ....+++.+.+.+++   ||.+++.+
T Consensus       498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            689999876432110 0000111           123455666777766   67777643

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=87.00  E-value=3.6  Score=38.41  Aligned_cols=96  Identities=26%  Similarity=0.279  Sum_probs=55.8

Q ss_pred             CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEcc---CCCCccCCCccEEEE
Q 019324          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD---VLDTKLERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D---~~~~~~~~~fD~V~~  236 (343)
                      .++.+||-+|+| .|.++..+++. |...|++++.++.-.+.+++.    |... +.....+   +.+......+|+|+.
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~vid  237 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADVAIE  237 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCEEEE
Confidence            568899999874 23344455554 663499999998887777542    3211 1111111   001111236899986


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ...-          .   ..+....+.|+++|.+++...
T Consensus       238 ~~g~----------~---~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         238 CSGN----------T---AARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCCC----------H---HHHHHHHHHhhcCCEEEEEcC
Confidence            3211          1   233677889999999987543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=86.99  E-value=10  Score=33.64  Aligned_cols=75  Identities=16%  Similarity=0.112  Sum_probs=51.1

Q ss_pred             CCCCeEEEEccCccHHHH----HHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~----~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|-.|+ +|.++.    .|+++|+ +|+.++-++..++...+.....+ .++.++.+|+.+...           
T Consensus        10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~~~i~~~~~~~~~~   86 (259)
T PRK08213         10 LSGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG-IDALWIAADVADEADIERLAEETLER   86 (259)
T ss_pred             cCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            34678999985 444444    4455576 89999999877776666554444 367889999987531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      .+..|.|+.+...
T Consensus        87 ~~~id~vi~~ag~   99 (259)
T PRK08213         87 FGHVDILVNNAGA   99 (259)
T ss_pred             hCCCCEEEECCCC
Confidence            1468999887543

>PRK07576 short chain dehydrogenase; Provisional

Probab=86.92  E-value=10  Score=33.98  Aligned_cols=74  Identities=15%  Similarity=0.188  Sum_probs=48.5

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|-.|.+.|   .+...++..|+ .|++++.++..++...+.....+ .++.++.+|+.+...           .
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34678888886433   23444555676 79999998877665555444433 257788999886431           1


Q ss_pred             CCccEEEECc
Q 019324          229 RQFQLVMDKG  238 (343)
Q Consensus       229 ~~fD~V~~~~  238 (343)
                      +.+|+++.+.
T Consensus        85 ~~iD~vi~~a   94 (264)
T PRK07576         85 GPIDVLVSGA   94 (264)
T ss_pred             CCCCEEEECC
Confidence            3679998764

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=86.91  E-value=6.2  Score=36.53  Aligned_cols=95  Identities=25%  Similarity=0.320  Sum_probs=57.6

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-----CccCCCccEE
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-----TKLERQFQLV  234 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-----~~~~~~fD~V  234 (343)
                      ..++.+||-+|+| .|..+..+++. |...+++++-++...+.+++.    +..  .++..+-..     ......+|++
T Consensus       157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~vd~v  230 (334)
T cd08234         157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT--ETVDPSREDPEAQKEDNPYGFDVV  230 (334)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe--EEecCCCCCHHHHHHhcCCCCcEE
Confidence            3567899999865 35555556655 653489999998888777542    221  122211111     0123568999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +....-             ...+..+.++|+++|+++....
T Consensus       231 ~~~~~~-------------~~~~~~~~~~l~~~G~~v~~g~  258 (334)
T cd08234         231 IEATGV-------------PKTLEQAIEYARRGGTVLVFGV  258 (334)
T ss_pred             EECCCC-------------hHHHHHHHHHHhcCCEEEEEec
Confidence            864211             1244778899999999987543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK07806 short chain dehydrogenase; Provisional

Probab=86.61  E-value=11  Score=33.22  Aligned_cols=108  Identities=12%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             CCCeEEEEccCcc--H-HHHHHHhcCCCcEEEEeCCh-HHHHHHHHHHHHcCCCceEEEEccCCCCcc-----C------
Q 019324          164 SSWSVLDIGTGNG--L-LLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G--~-~~~~la~~g~~~v~gvD~s~-~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~------  228 (343)
                      +++++|-.|+..|  . +...|++.|+ +|++++.+. ...+.....+...+ .++.++.+|+.+...     .      
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            3568998887443  2 3444555676 788887654 23333333333333 367889999987531     1      


Q ss_pred             CCccEEEECccccccc-cCCC-----ChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          229 RQFQLVMDKGTLDAIG-LHPD-----GPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~-~~~~-----~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +..|+++.+....... ..+.     ...-...+++.+.+.++.+|.+++.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i  133 (248)
T PRK07806         83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV  133 (248)
T ss_pred             CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence            3689888665321110 0000     0112335667777777666766664

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=86.54  E-value=5.5  Score=36.83  Aligned_cols=92  Identities=17%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             CCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECc
Q 019324          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~  238 (343)
                      .++.+||-.||| .|..+..+++. |. +|++++-++...+.+++.    +...  ++...-....  ..+.+|+++...
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~----g~~~--~~~~~~~~~~~~~~~~~d~vi~~~  233 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL----GADE--VVDSGAELDEQAAAGGADVILVTV  233 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----CCcE--EeccCCcchHHhccCCCCEEEECC
Confidence            567889999986 66666666666 65 799999999888777542    2111  1111000000  124588888631


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .-          .   ..+..+.+.|+++|.++...
T Consensus       234 ~~----------~---~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         234 VS----------G---AAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             Cc----------H---HHHHHHHHhcccCCEEEEEC
Confidence            10          0   23477889999999998764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.40  E-value=3.6  Score=37.84  Aligned_cols=75  Identities=21%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..+..||-=|.|.|   .++..++++|+ .+...|+++...+...+.....|  ++....+|+.+...           -
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            56789999999998   46888888887 89999999999988888887766  79999999998641           3


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.|..+
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            689999988754

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=86.11  E-value=1.9  Score=44.61  Aligned_cols=107  Identities=13%  Similarity=0.163  Sum_probs=62.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHh-------c-C-----CCcEEEEeCChHHHHHHHH--------------HHHH-----c
Q 019324          163 LSSWSVLDIGTGNGLLLQELSK-------Q-G-----FSDLTGVDYSEDAINLAQS--------------LANR-----D  210 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~-------~-g-----~~~v~gvD~s~~~i~~a~~--------------~~~~-----~  210 (343)
                      .+.-+|||+|-|+|.......+       . .     .-+++++|..|-..+..++              ....     .
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP  135 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence            3457999999999975444431       1 1     1178999975532222222              1111     1


Q ss_pred             CCC---------ceEEEEccCCCCc--cCCCccEEEECccccccccCCCChhhH--HHHHHHHhhccCCCcEEEEEec
Q 019324          211 GFS---------CIKFLVDDVLDTK--LERQFQLVMDKGTLDAIGLHPDGPLKR--IMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       211 ~~~---------~i~~~~~D~~~~~--~~~~fD~V~~~~~l~~i~~~~~~~~~~--~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |+.         ++++..+|+.+..  +...+|+++..+.      .|....++  ..+++.+.++++|||++.--+.
T Consensus       136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F------sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~  207 (662)
T PRK01747        136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF------APAKNPDMWSPNLFNALARLARPGATLATFTS  207 (662)
T ss_pred             CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC------CCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence            210         3556777876542  2356899996542      22221222  4688999999999999886443

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=86.03  E-value=16  Score=32.38  Aligned_cols=75  Identities=16%  Similarity=0.223  Sum_probs=51.0

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      +++++|-.|+..|   .+...|+++|+ +|+.++.++...+.+.+.+...+ .++.++.+|+.+...           .+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAG-GKAIGVAMDVTNEDAVNAGIDKVAERFG   83 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcC-ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3568887777443   34555666677 79999999877776666555444 367889999987531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+|+.+...
T Consensus        84 ~~d~vi~~ag~   94 (262)
T PRK13394         84 SVDILVSNAGI   94 (262)
T ss_pred             CCCEEEECCcc
Confidence            58988876543

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=85.89  E-value=13  Score=35.68  Aligned_cols=108  Identities=19%  Similarity=0.200  Sum_probs=61.7

Q ss_pred             CCCCeEEEEccCccH----HHHHHHhc--CC-C-cEEEEeC----ChHHHHHHHHHHH----HcCCCceEEEEc---cCC
Q 019324          163 LSSWSVLDIGTGNGL----LLQELSKQ--GF-S-DLTGVDY----SEDAINLAQSLAN----RDGFSCIKFLVD---DVL  223 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~----~~~~la~~--g~-~-~v~gvD~----s~~~i~~a~~~~~----~~~~~~i~~~~~---D~~  223 (343)
                      .+.-.|+|+|.|.|.    +...|+.+  |. . ++||++.    +...++.+.+++.    ..|+ ..+|...   ++.
T Consensus       109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~~v~~~~~e  187 (374)
T PF03514_consen  109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFHPVVVESLE  187 (374)
T ss_pred             CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEEecccCchh
Confidence            466799999999994    55666665  22 2 8999999    7788887777654    3454 3444442   333


Q ss_pred             CCcc------CCCccEEEECccccccccCCCChhh-HHHHHHHHhhccCCCcEEEE
Q 019324          224 DTKL------ERQFQLVMDKGTLDAIGLHPDGPLK-RIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       224 ~~~~------~~~fD~V~~~~~l~~i~~~~~~~~~-~~~~l~~~~~~LkpgG~lii  272 (343)
                      +...      ++..=+|-+...++++.-++..... +..+|+ ..+.|+|.-.+++
T Consensus       188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~  242 (374)
T PF03514_consen  188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLV  242 (374)
T ss_pred             hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEE
Confidence            3221      2222223344455666422222222 334554 4557799966666

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK05650 short chain dehydrogenase; Provisional

Probab=85.78  E-value=17  Score=32.60  Aligned_cols=72  Identities=18%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             eEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCcc
Q 019324          167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ  232 (343)
Q Consensus       167 ~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~fD  232 (343)
                      +||-.|+..|.   ++..|++.|. +|+.++.+....+.+...+...+ .++.++.+|+.+...           -+.+|
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDYSQLTALAQACEEKWGGID   79 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            57777765542   4555666676 79999998877666655554444 368889999987531           14689


Q ss_pred             EEEECccc
Q 019324          233 LVMDKGTL  240 (343)
Q Consensus       233 ~V~~~~~l  240 (343)
                      +++.+...
T Consensus        80 ~lI~~ag~   87 (270)
T PRK05650         80 VIVNNAGV   87 (270)
T ss_pred             EEEECCCC
Confidence            99987543

>PRK09242 tropinone reductase; Provisional

Probab=85.75  E-value=16  Score=32.32  Aligned_cols=76  Identities=18%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-CCCceEEEEccCCCCcc-----------C
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .++++|-.|++.|   .++..+++.|+ +|+.++.++..++...+.+... +-.++.++.+|+.+...           -
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4678999998655   34556666786 7999999887776666555433 11268888999887421           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +.+|+++.+...
T Consensus        87 g~id~li~~ag~   98 (257)
T PRK09242         87 DGLHILVNNAGG   98 (257)
T ss_pred             CCCCEEEECCCC
Confidence            468998876643

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=85.65  E-value=6.6  Score=36.37  Aligned_cols=94  Identities=14%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEc-cCCCC---ccCCCccE
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVD-DVLDT---KLERQFQL  233 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~-D~~~~---~~~~~fD~  233 (343)
                      ..++.+||-.|.  |.|.++..+++. |. +|++++-++.-.+.+++    .|...+ ..... +..+.   ...+.+|+
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvdv  210 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYDC  210 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCeEE
Confidence            366889998884  577777778776 65 79999999887777754    233211 11110 11110   01246888


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+....           .   ..+....++|+++|+++...
T Consensus       211 v~d~~G-----------~---~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       211 YFDNVG-----------G---EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             EEECCC-----------H---HHHHHHHHHhCcCcEEEEec
Confidence            886311           1   13477889999999999753

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.62  E-value=6.2  Score=36.22  Aligned_cols=108  Identities=13%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             eEEEEccCc--cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-------C-C---------CceEEEEccCCCCcc
Q 019324          167 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------G-F---------SCIKFLVDDVLDTKL  227 (343)
Q Consensus       167 ~VLDiGcG~--G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-------~-~---------~~i~~~~~D~~~~~~  227 (343)
                      +|.=||+|.  +.++..++..|+ +|+.+|.++..++.+.++....       + +         .++.+ ..|..+  .
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--~   78 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA--A   78 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH--h
Confidence            678888874  235556666676 8999999999999887643211       1 0         01221 122211  1


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~  286 (343)
                      -...|+|+..-.        +.......++.++.+.++|+.++...+.......+....
T Consensus        79 ~~~aD~Vi~avp--------e~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~  129 (288)
T PRK09260         79 VADADLVIEAVP--------EKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFT  129 (288)
T ss_pred             hcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc
Confidence            235688885311        222233456778888888987766655555555544433

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=85.43  E-value=1.8  Score=40.69  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=54.3

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEcc---CCCCccCCCcc-EEE
Q 019324          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD---VLDTKLERQFQ-LVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D---~~~~~~~~~fD-~V~  235 (343)
                      .++.+||-.|||. |.++..+++. |...|++++.++.-.+.+++    .|... +.....+   +.+......+| +|+
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~  234 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQLIL  234 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeEEE
Confidence            5678999998743 3344455554 66458999999988877754    23211 1111111   00111123567 665


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ....-             ...+....+.|++||.+++..
T Consensus       235 d~~G~-------------~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        235 ETAGV-------------PQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             ECCCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence            42111             124578889999999998864

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=85.36  E-value=1.3  Score=38.94  Aligned_cols=63  Identities=24%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~  226 (343)
                      ..+.-|.+||.|.|.++..+.+.|..++..++.+...+.-.+...+... .+..+..+|+....
T Consensus        49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~  111 (326)
T KOG0821|consen   49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFK  111 (326)
T ss_pred             cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEeccccceeh
Confidence            4567899999999999999999988899999999999888877666444 26778888887653

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=85.14  E-value=19  Score=31.78  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=51.4

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..+....+.....+ .++.++.+|+.+...           -+
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEG-IKAHAAPFNVTHKQEVEAAIEHIEKDIG   85 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            4678998887655   34556666676 89999998777666655554433 267788899887531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      .+|+++.+...
T Consensus        86 ~id~vi~~ag~   96 (254)
T PRK08085         86 PIDVLINNAGI   96 (254)
T ss_pred             CCCEEEECCCc
Confidence            68999987643

>PRK09072 short chain dehydrogenase; Provisional

Probab=85.06  E-value=17  Score=32.37  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=51.5

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------CCC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ  230 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------~~~  230 (343)
                      ++.++|-.|++.|   .++..++++|+ +|++++.++..++...... ..+ .++.++.+|+.+...          -+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence            3568898888765   35566677786 7999999987776665544 222 378899999987531          146


Q ss_pred             ccEEEECccc
Q 019324          231 FQLVMDKGTL  240 (343)
Q Consensus       231 fD~V~~~~~l  240 (343)
                      .|.++.+...
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            7999887543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=84.98  E-value=6.9  Score=35.76  Aligned_cols=100  Identities=21%  Similarity=0.217  Sum_probs=58.6

Q ss_pred             eEEEEccCc--cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccc
Q 019324          167 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       167 ~VLDiGcG~--G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~  244 (343)
                      +|.=||+|.  |.++..|.+.|. +|+++|.++..++.+.+.    +.  +.....+..   .-...|+|+..-..    
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~--~~~~~~~~~---~~~~aDlVilavp~----   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL--VDEASTDLS---LLKDCDLVILALPI----   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC--cccccCCHh---HhcCCCEEEEcCCH----
Confidence            466788875  456666667775 899999999888777642    21  111111111   12457888864332    


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                            .....+++++...++++. ++ +.....+....+.+..
T Consensus        68 ------~~~~~~~~~l~~~l~~~~-ii-~d~~Svk~~~~~~~~~  103 (279)
T PRK07417         68 ------GLLLPPSEQLIPALPPEA-IV-TDVGSVKAPIVEAWEK  103 (279)
T ss_pred             ------HHHHHHHHHHHHhCCCCc-EE-EeCcchHHHHHHHHHH
Confidence                  233456688888887774 33 4344455555555543

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=84.91  E-value=1.9  Score=40.60  Aligned_cols=96  Identities=24%  Similarity=0.296  Sum_probs=62.6

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc----cCCCccE
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK----LERQFQL  233 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~----~~~~fD~  233 (343)
                      +.++.+||-.|.  |.|.++..|++. |+ .++++--++.-.+.+++.    |.+ -+.+...|+.+..    ....+|+
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g~gvDv  214 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELTGGKGVDV  214 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence            366889999985  567888888887 65 777887777666655543    322 2333344433221    1346999


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      |++.-.-              ..+.+..+.|+++|.++.....
T Consensus       215 v~D~vG~--------------~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         215 VLDTVGG--------------DTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             EEECCCH--------------HHHHHHHHHhccCCEEEEEecC
Confidence            9974322              2347788999999999886543

>PRK07102 short chain dehydrogenase; Provisional

Probab=84.87  E-value=5.8  Score=34.93  Aligned_cols=72  Identities=15%  Similarity=0.068  Sum_probs=47.2

Q ss_pred             CeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--------CCCccEE
Q 019324          166 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------ERQFQLV  234 (343)
Q Consensus       166 ~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--------~~~fD~V  234 (343)
                      ++||-.|+..|   .++..+++.|+ +|++++.++...+...+.....+..++.++.+|+.+...        ...+|++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            36888886544   23445556676 799999998766554444333322478999999987631        2357988


Q ss_pred             EECc
Q 019324          235 MDKG  238 (343)
Q Consensus       235 ~~~~  238 (343)
                      +.+.
T Consensus        81 v~~a   84 (243)
T PRK07102         81 LIAV   84 (243)
T ss_pred             EECC
Confidence            8754

>cd08293 PTGR2 Prostaglandin reductase

Probab=84.76  E-value=7.3  Score=36.31  Aligned_cols=90  Identities=17%  Similarity=0.216  Sum_probs=56.2

Q ss_pred             CeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc---cCCCC---ccCCCccEEEE
Q 019324          166 WSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLDT---KLERQFQLVMD  236 (343)
Q Consensus       166 ~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~---D~~~~---~~~~~fD~V~~  236 (343)
                      .+||-.|+  |.|..+..+++. |..+|++++-++...+.+++.+   |.+.  ++..   ++.+.   ...+.+|+|+.
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~~--vi~~~~~~~~~~i~~~~~~gvd~vid  230 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFDA--AINYKTDNVAERLRELCPEGVDVYFD  230 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCcE--EEECCCCCHHHHHHHHCCCCceEEEE
Confidence            78998886  567777777776 6546999999988777776532   3321  1111   11100   01246888886


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ...-              ..+....++|+++|+++...
T Consensus       231 ~~g~--------------~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         231 NVGG--------------EISDTVISQMNENSHIILCG  254 (345)
T ss_pred             CCCc--------------HHHHHHHHHhccCCEEEEEe
Confidence            3111              12367888999999998743

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK06181 short chain dehydrogenase; Provisional

Probab=84.35  E-value=22  Score=31.54  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=47.1

Q ss_pred             CeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCc
Q 019324          166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF  231 (343)
Q Consensus       166 ~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~f  231 (343)
                      .+||-.|+..|.   ++..+++.|+ +|++++.++...+...+.....+ .++.++.+|+.+...           -+..
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG-GEALVVPTDVSDAEACERLIEAAVARFGGI   79 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            367877764431   3334555676 89999999877666555554444 368889999987531           1368


Q ss_pred             cEEEECcc
Q 019324          232 QLVMDKGT  239 (343)
Q Consensus       232 D~V~~~~~  239 (343)
                      |+|+.+..
T Consensus        80 d~vi~~ag   87 (263)
T PRK06181         80 DILVNNAG   87 (263)
T ss_pred             CEEEECCC
Confidence            99987654

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=84.30  E-value=6.4  Score=35.71  Aligned_cols=64  Identities=17%  Similarity=0.157  Sum_probs=40.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC------CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG------FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g------~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~  227 (343)
                      .++..++|+|||.|.++.+++..-      ...++.||-...-.+.=+ .+..... +.+.=+..|+.++.+
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~l   87 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLDL   87 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccch
Confidence            457799999999999999988752      237899998653332222 2222210 235555666666543

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK12937 short chain dehydrogenase; Provisional

Probab=84.07  E-value=22  Score=31.06  Aligned_cols=110  Identities=13%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC-hHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s-~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ++++||-.|++.|   .++..|+++|+ +++.+.-+ +...+...+.....+ .++.++..|+.+...           -
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTRLFDAAETAF   81 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4678999998544   24555666676 56665543 333333333333333 368899999887531           1


Q ss_pred             CCccEEEECcccccc-ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEec
Q 019324          229 RQFQLVMDKGTLDAI-GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i-~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +..|+++.+...... .+......+.           ..+++.+.+.++++|.+++.+.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence            468998886543211 0011111111           2344566667777888777543

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=84.01  E-value=2  Score=40.18  Aligned_cols=96  Identities=23%  Similarity=0.304  Sum_probs=56.5

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccC----CCCccCCCccEE
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV----LDTKLERQFQLV  234 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~----~~~~~~~~fD~V  234 (343)
                      ..++.+||..|+| .|..+..+++. |...+++++.++...+.+++.    +... +.....+.    ......+.+|++
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~v  240 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDCV  240 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcEE
Confidence            3567889887765 35666666665 544788998888777766642    2111 11111111    111112568988


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +....-             ...+....+.|+++|+++...
T Consensus       241 ld~~g~-------------~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         241 IEAVGF-------------EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             EEccCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence            863211             024578889999999988653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.94  E-value=28  Score=31.56  Aligned_cols=108  Identities=13%  Similarity=0.051  Sum_probs=61.8

Q ss_pred             CCCeEEEEccC----cc-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          164 SSWSVLDIGTG----NG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       164 ~~~~VLDiGcG----~G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .++++|-.|++    -| .++..+++.|+ +|+.++.+....+.+++.....+. . .++.+|+.+...           
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHH
Confidence            36789999985    23 24555666787 788888885433333333333332 3 567889987631           


Q ss_pred             CCCccEEEECcccccc-----ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                      -+.+|+++.+..+..-     .+......+.           ..+.+.+...++.+|.++..+
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is  143 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS  143 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence            2578999988654210     0011111111           234466677777778776643

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=83.92  E-value=7.5  Score=36.56  Aligned_cols=43  Identities=19%  Similarity=0.343  Sum_probs=32.8

Q ss_pred             cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHH
Q 019324          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (343)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~  205 (343)
                      ..++.+||-.|||. |..+..+++. |. +|+++|.++.-++.+++
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            36688999999954 5555666665 66 79999999998887765

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK06128 oxidoreductase; Provisional

Probab=83.63  E-value=21  Score=32.76  Aligned_cols=108  Identities=13%  Similarity=0.147  Sum_probs=62.2

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChH--HHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED--AINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~--~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++||-.|++.|   .++..|++.|+ +|+.+..+..  ..+...+.+...+ .++.++.+|+.+...           
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~  131 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG-RKAVALPGDLKDEAFCRQLVERAVKE  131 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence            4678999997555   24555666676 6777665432  2333333333334 367888999987531           


Q ss_pred             CCCccEEEECccccccc--cCCCChhh-----------HHHHHHHHhhccCCCcEEEEE
Q 019324          228 ERQFQLVMDKGTLDAIG--LHPDGPLK-----------RIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~--~~~~~~~~-----------~~~~l~~~~~~LkpgG~lii~  273 (343)
                      -+..|+++.+.......  +......+           ...+++.+.+.++++|.+++.
T Consensus       132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~  190 (300)
T PRK06128        132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT  190 (300)
T ss_pred             hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence            14689999876542110  01111111           124556677777888887774

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.54  E-value=25  Score=31.44  Aligned_cols=75  Identities=16%  Similarity=0.006  Sum_probs=44.3

Q ss_pred             CCCeEEEEccCc-cH----HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          164 SSWSVLDIGTGN-GL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       164 ~~~~VLDiGcG~-G~----~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .++++|-.|+++ +.    ++..|++.|+ +|+.++.+....+..++......-.++.++++|+.+...           
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            467899999862 33    3555566686 788776543222222222222211367788999987631           


Q ss_pred             CCCccEEEECcc
Q 019324          228 ERQFQLVMDKGT  239 (343)
Q Consensus       228 ~~~fD~V~~~~~  239 (343)
                      -+.+|+++.+..
T Consensus        85 ~g~ld~lv~nag   96 (257)
T PRK08594         85 VGVIHGVAHCIA   96 (257)
T ss_pred             CCCccEEEECcc
Confidence            257899887654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=83.52  E-value=12  Score=34.47  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=60.0

Q ss_pred             CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc----------CC----------CceEEEEccCC
Q 019324          166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----------GF----------SCIKFLVDDVL  223 (343)
Q Consensus       166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~----------~~----------~~i~~~~~D~~  223 (343)
                      .+|.-||||.=  .++..++..|+ +|+.+|.++..++.+++.....          +.          .++.+. .|..
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence            46888999842  35556666776 8999999999998776543321          10          011111 1211


Q ss_pred             CCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          224 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       224 ~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                         .-...|+|+..     +   ++.......+++++.+.++|+.+++..+......++..
T Consensus        82 ---~~~~aDlViea-----v---~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~  131 (291)
T PRK06035         82 ---SLSDADFIVEA-----V---PEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT  131 (291)
T ss_pred             ---HhCCCCEEEEc-----C---cCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh
Confidence               11346888763     2   12222345677888888888876543333333344444

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=83.31  E-value=3  Score=38.99  Aligned_cols=97  Identities=20%  Similarity=0.295  Sum_probs=57.7

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEcc-------CCCCccCCC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDD-------VLDTKLERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D-------~~~~~~~~~  230 (343)
                      ...++.+||-.|+|. |..+..+++. |...|++++-++...+.+++.    +...+ .....+       +........
T Consensus       159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T cd05285         159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGKG  234 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCCC
Confidence            346678888887754 5566666665 653399999888877777542    32111 111111       111111345


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +|+|+......             ..+....++|+++|.++...
T Consensus       235 ~d~vld~~g~~-------------~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         235 PDVVIECTGAE-------------SCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             CCEEEECCCCH-------------HHHHHHHHHhhcCCEEEEEc
Confidence            89998642211             13478889999999988754

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02740 Alcohol dehydrogenase-like

Probab=83.31  E-value=6.1  Score=37.77  Aligned_cols=95  Identities=20%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             ccCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc-----CCCC--c-cCCC
Q 019324          161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-----VLDT--K-LERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D-----~~~~--~-~~~~  230 (343)
                      ...++.+||-+||| .|.++..+++. |...|+++|.++.-++.+++    .|.+.  ++...     ..+.  . ..+.
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~~~~g  268 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREMTGGG  268 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHHhCCC
Confidence            44678899999875 23344455554 65479999999988888865    23211  22111     1110  0 1226


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEe
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS  274 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~  274 (343)
                      +|+|+....-          .   ..+....+.+++| |++++..
T Consensus       269 ~dvvid~~G~----------~---~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        269 VDYSFECAGN----------V---EVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             CCEEEECCCC----------h---HHHHHHHHhhhcCCCEEEEEc
Confidence            8988863221          1   2346777888886 8887754

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=83.30  E-value=4.2  Score=36.74  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=52.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      .++....|+|.-.|.++-.|.+++. .|+++|.-+-+-...     ..  ..++....|..++.+ ....|-.+|..
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~-----dt--g~v~h~r~DGfk~~P~r~~idWmVCDm  278 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM-----DT--GQVTHLREDGFKFRPTRSNIDWMVCDM  278 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh-----cc--cceeeeeccCcccccCCCCCceEEeeh
Confidence            6788999999999999999999976 899999865433222     22  368888888888766 56778777753

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.07  E-value=25  Score=31.75  Aligned_cols=74  Identities=22%  Similarity=0.124  Sum_probs=47.4

Q ss_pred             CCCeEEEEccCc--c---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          164 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       164 ~~~~VLDiGcG~--G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      +++++|-.|++.  |   .++..|++.|+ +|+.++.+....+..++.....+  ...++++|+.+...           
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g--~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG--SDFVLPCDVEDIASVDAVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC--CceEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899999865  4   35666777787 78888876544333333333333  23467889987531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        83 ~g~iD~lVnnAG~   95 (271)
T PRK06505         83 WGKLDFVVHAIGF   95 (271)
T ss_pred             hCCCCEEEECCcc
Confidence            2578999987654

>PRK08226 short chain dehydrogenase; Provisional

Probab=83.04  E-value=27  Score=30.93  Aligned_cols=74  Identities=22%  Similarity=0.296  Sum_probs=48.3

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|+..|   .++..|+++|+ +|+.++.++...+.+++. ...+ .++.++.+|+.+...           .+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~-~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADEL-CGRG-HRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHH-HHhC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678898887654   24555566676 799999887654444333 2223 367889999987531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+...
T Consensus        82 ~id~vi~~ag~   92 (263)
T PRK08226         82 RIDILVNNAGV   92 (263)
T ss_pred             CCCEEEECCCc
Confidence            67999987654

>PRK07904 short chain dehydrogenase; Provisional

Probab=82.97  E-value=6.3  Score=35.25  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=49.2

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHH-HHHHHHHHHHcCCCceEEEEccCCCCcc----------C
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDA-INLAQSLANRDGFSCIKFLVDDVLDTKL----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~-i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------~  228 (343)
                      ..+.+||-.||+.|.   ++..++++|..+|+.++-++.. ++.+.+.+...+..++.++.+|+.+...          .
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            456789999996552   3444555642389999888764 5555444444443478999999976531          1


Q ss_pred             CCccEEEECc
Q 019324          229 RQFQLVMDKG  238 (343)
Q Consensus       229 ~~fD~V~~~~  238 (343)
                      +..|+++.+.
T Consensus        86 g~id~li~~a   95 (253)
T PRK07904         86 GDVDVAIVAF   95 (253)
T ss_pred             CCCCEEEEee
Confidence            4789887654

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=82.89  E-value=17  Score=33.58  Aligned_cols=75  Identities=16%  Similarity=0.190  Sum_probs=44.3

Q ss_pred             CCCeEEEEccCccHHHHHH----HhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc----CCCccEE
Q 019324          164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL----ERQFQLV  234 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~l----a~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~----~~~fD~V  234 (343)
                      .+++||-.|+ +|.++..+    ++.|+ +|+++..++.............+. .++.++.+|+.+...    -...|+|
T Consensus         4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   81 (325)
T PLN02989          4 GGKVVCVTGA-SGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV   81 (325)
T ss_pred             CCCEEEEECC-chHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence            3568888884 55554444    44576 788877665443333222211121 368899999988642    1357988


Q ss_pred             EECccc
Q 019324          235 MDKGTL  240 (343)
Q Consensus       235 ~~~~~l  240 (343)
                      +.....
T Consensus        82 ih~A~~   87 (325)
T PLN02989         82 FHTASP   87 (325)
T ss_pred             EEeCCC
Confidence            876543

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=82.84  E-value=18  Score=31.78  Aligned_cols=74  Identities=11%  Similarity=0.119  Sum_probs=48.9

Q ss_pred             CCCCeEEEEccCccH--HHHHH--Hhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCC-Cc-cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGL--LLQEL--SKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD-TK-LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~--~~~~l--a~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~-~~-~~~~fD~V  234 (343)
                      ...+.++++.|+.|.  .++.|  |.+ -..++++|-.++..+...++.+...++.+ ++|+.++..+ .. .-...|++
T Consensus        40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~  119 (218)
T PF07279_consen   40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV  119 (218)
T ss_pred             ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence            556789999766542  23333  333 22489999999999888888887777643 6999887533 21 12467777


Q ss_pred             EE
Q 019324          235 MD  236 (343)
Q Consensus       235 ~~  236 (343)
                      +.
T Consensus       120 vV  121 (218)
T PF07279_consen  120 VV  121 (218)
T ss_pred             EE
Confidence            75

The function of this family is unknown.

>PRK05872 short chain dehydrogenase; Provisional

Probab=82.80  E-value=18  Score=33.11  Aligned_cols=75  Identities=21%  Similarity=0.239  Sum_probs=50.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .++++||-.|++.|   .++..+++.|+ +|+.++.++..++...+.+.. + ..+..+.+|+.+...           -
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            34678998887665   24556666786 899999998876665544321 2 245566688887521           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        84 g~id~vI~nAG~   95 (296)
T PRK05872         84 GGIDVVVANAGI   95 (296)
T ss_pred             CCCCEEEECCCc
Confidence            578999988654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.65  E-value=25  Score=32.24  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-------CC----------CceEEEEccCCCCc
Q 019324          166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF----------SCIKFLVDDVLDTK  226 (343)
Q Consensus       166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-------~~----------~~i~~~~~D~~~~~  226 (343)
                      .+|.=||+|+-  .++..++..|. +|+.+|.++..++.+.++...+       +.          .++.+ ..|...  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED--   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence            46888899854  34556666676 8999999999988765433211       21          11222 223221  


Q ss_pred             cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324          227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  282 (343)
Q Consensus       227 ~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  282 (343)
                       -...|+|+..     +   +........+++.+...++|+.+++..+.......+
T Consensus        81 -~~~aD~Viea-----v---pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~l  127 (292)
T PRK07530         81 -LADCDLVIEA-----A---TEDETVKRKIFAQLCPVLKPEAILATNTSSISITRL  127 (292)
T ss_pred             -hcCCCEEEEc-----C---cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence             1356888763     2   122223346678888999998876644333333333

>PRK07832 short chain dehydrogenase; Provisional

Probab=82.59  E-value=25  Score=31.58  Aligned_cols=72  Identities=19%  Similarity=0.180  Sum_probs=45.4

Q ss_pred             eEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCcc
Q 019324          167 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ  232 (343)
Q Consensus       167 ~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~fD  232 (343)
                      ++|-.|++.|   .++..+++.|+ .|+.++.++..++...+.+...+...+.+..+|+.+...           -+..|
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            5677776554   24455566676 799999888776666555443332235567888876421           24589


Q ss_pred             EEEECcc
Q 019324          233 LVMDKGT  239 (343)
Q Consensus       233 ~V~~~~~  239 (343)
                      +++.+..
T Consensus        81 ~lv~~ag   87 (272)
T PRK07832         81 VVMNIAG   87 (272)
T ss_pred             EEEECCC
Confidence            9987654

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=82.55  E-value=11  Score=33.32  Aligned_cols=76  Identities=14%  Similarity=0.165  Sum_probs=50.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------------  227 (343)
                      .++++||-.|+..|   .++..|++.|+ +|++++.++...+...+.+...+..++.++..|+.....            
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            45789999996544   23444555676 899999998777666555544443467788888863211            


Q ss_pred             -CCCccEEEECcc
Q 019324          228 -ERQFQLVMDKGT  239 (343)
Q Consensus       228 -~~~fD~V~~~~~  239 (343)
                       -+..|.|+.+..
T Consensus        89 ~~~~id~vi~~Ag  101 (247)
T PRK08945         89 QFGRLDGVLHNAG  101 (247)
T ss_pred             HhCCCCEEEECCc
Confidence             246899988754

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=82.48  E-value=9.6  Score=35.54  Aligned_cols=95  Identities=17%  Similarity=0.188  Sum_probs=59.3

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEc-cCCCC---ccCCCccE
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVD-DVLDT---KLERQFQL  233 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~-D~~~~---~~~~~fD~  233 (343)
                      ..++.+||-.|+  |.|.++..+++. |. +|++++.++.-.+.+++.+   |...+ ..... +..+.   ...+.+|+
T Consensus       149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd~  224 (338)
T cd08295         149 PKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGIDI  224 (338)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence            367889999986  566777777776 66 7999998888777776532   32211 11111 11110   01246888


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+....           .   ..+....++|+++|.++...
T Consensus       225 v~d~~g-----------~---~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         225 YFDNVG-----------G---KMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             EEECCC-----------H---HHHHHHHHHhccCcEEEEec
Confidence            876311           1   23578889999999998753

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=81.95  E-value=25  Score=29.85  Aligned_cols=107  Identities=21%  Similarity=0.354  Sum_probs=65.3

Q ss_pred             eEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-------cC----------CCceEEEEccCCCCcc
Q 019324          167 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG----------FSCIKFLVDDVLDTKL  227 (343)
Q Consensus       167 ~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-------~~----------~~~i~~~~~D~~~~~~  227 (343)
                      +|.-||+|+=  .++..++..|+ +|+.+|.++..++.+++.+..       .+          ..++. ...|+.+.  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence            3666888754  34555566676 899999999999988876543       11          11343 33444432  


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~  286 (343)
                       ...|+|+-.     +   ++.......+++++-+++.|+-+|...+......++...+
T Consensus        77 -~~adlViEa-----i---~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~  126 (180)
T PF02737_consen   77 -VDADLVIEA-----I---PEDLELKQELFAELDEICPPDTILASNTSSLSISELAAAL  126 (180)
T ss_dssp             -CTESEEEE------S----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTS
T ss_pred             -hhhheehhh-----c---cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhcc
Confidence             257888763     2   2333555678899999999999888777777666665544

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=81.80  E-value=11  Score=36.33  Aligned_cols=113  Identities=18%  Similarity=0.207  Sum_probs=65.7

Q ss_pred             CCeEEEEccCc-cH-HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----------C--c--c-
Q 019324          165 SWSVLDIGTGN-GL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----------T--K--L-  227 (343)
Q Consensus       165 ~~~VLDiGcG~-G~-~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~----------~--~--~-  227 (343)
                      ..+|--+|-|- |. ++..++..|+ +|+|+|+++..++...+-       ...+..-+...          +  .  + 
T Consensus         9 ~~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G-------~~~i~e~~~~~~v~~~v~~g~lraTtd~~   80 (436)
T COG0677           9 SATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRG-------ESYIEEPDLDEVVKEAVESGKLRATTDPE   80 (436)
T ss_pred             ceEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCC-------cceeecCcHHHHHHHHHhcCCceEecChh
Confidence            35777777763 32 2444556677 899999999999877541       11111111110          0  0  0 


Q ss_pred             -CCCccEEEE-Cc-cccccccCCCChhhHHHHHHHHhhccCCCcEEEEE--ecCCChHHHHHHHH
Q 019324          228 -ERQFQLVMD-KG-TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT--SCNSTKDELVHEVS  287 (343)
Q Consensus       228 -~~~fD~V~~-~~-~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~--~~~~~~~~~~~~~~  287 (343)
                       -...|+++. -. .+..  .+.++........+.+.+.|++|-.+++.  ++..+.+++...+.
T Consensus        81 ~l~~~dv~iI~VPTPl~~--~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pll  143 (436)
T COG0677          81 ELKECDVFIICVPTPLKK--YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLL  143 (436)
T ss_pred             hcccCCEEEEEecCCcCC--CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHH
Confidence             014555442 22 2221  13333455567778999999999999994  45666777777665

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=81.60  E-value=9.2  Score=36.87  Aligned_cols=108  Identities=18%  Similarity=0.145  Sum_probs=58.2

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc---cCCC----CccCCCcc
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLD----TKLERQFQ  232 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~---D~~~----~~~~~~fD  232 (343)
                      ..++.+||-.|+| .|.++..+++. |...++.+|.++.-++.+++.    |. . .+...   +..+    ......+|
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga-~-~v~~~~~~~~~~~v~~~~~~~g~D  256 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC-E-TVDLSKDATLPEQIEQILGEPEVD  256 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC-e-EEecCCcccHHHHHHHHcCCCCCc
Confidence            4667888887775 33444555554 765577789988878877752    32 1 11111   1111    11124689


Q ss_pred             EEEECcccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          233 LVMDKGTLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       233 ~V~~~~~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +++.......-.. +.-........++...+++++||.+++...
T Consensus       257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            8886322110000 000001111356888999999999998544

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK08339 short chain dehydrogenase; Provisional

Probab=81.41  E-value=9.3  Score=34.33  Aligned_cols=75  Identities=12%  Similarity=0.153  Sum_probs=52.6

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------CCC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ  230 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------~~~  230 (343)
                      +++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+....-.++.++.+|+.+...          -+.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            4678898898766   35667777787 799999998777666655433211368889999987631          146


Q ss_pred             ccEEEECcc
Q 019324          231 FQLVMDKGT  239 (343)
Q Consensus       231 fD~V~~~~~  239 (343)
                      .|+++.+..
T Consensus        86 iD~lv~nag   94 (263)
T PRK08339         86 PDIFFFSTG   94 (263)
T ss_pred             CcEEEECCC
Confidence            898887654

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=81.39  E-value=13  Score=34.91  Aligned_cols=96  Identities=20%  Similarity=0.244  Sum_probs=57.2

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCC----CCccCCCccEE
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVL----DTKLERQFQLV  234 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~----~~~~~~~fD~V  234 (343)
                      ..++.+||-.|+| .|..+..+++. |...++++|.++...+.+++    .|...+ .....+..    .......+|++
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~v  239 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDAV  239 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcEE
Confidence            3567899998875 34455556655 66569999999887777764    232111 11111110    11112468988


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +....-             ...+..+.++|+++|+++...
T Consensus       240 ld~~g~-------------~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         240 IIAGGG-------------QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             EECCCC-------------HHHHHHHHHHhhcCCEEEEec
Confidence            863210             124578889999999988653

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.28  E-value=9.2  Score=33.61  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=49.9

Q ss_pred             CCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      ++.++|-.|++.|.   +...++++|+ .|+.++.++..++.+.+.....+ .++.+++.|+.+...           -+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTDEEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789988874442   3344555676 79999999877666655554444 368889999876421           14


Q ss_pred             CccEEEECcc
Q 019324          230 QFQLVMDKGT  239 (343)
Q Consensus       230 ~fD~V~~~~~  239 (343)
                      .+|.|+.+..
T Consensus        82 ~id~vi~~ag   91 (253)
T PRK08217         82 QLNGLINNAG   91 (253)
T ss_pred             CCCEEEECCC
Confidence            6899998754

>PRK07985 oxidoreductase; Provisional

Probab=81.25  E-value=32  Score=31.41  Aligned_cols=109  Identities=13%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCCh--HHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE--DAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~--~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      .+++++|-.|++.|   .++..|++.|+ +|+.++.+.  ...+...+.....+ .++.++.+|+.+...          
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~  124 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECG-RKAVLLPGDLSDEKFARSLVHEAHK  124 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcC-CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            34678999997655   35666667786 788776543  33444444443334 367888999987531          


Q ss_pred             -CCCccEEEECcccccc--ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEE
Q 019324          228 -ERQFQLVMDKGTLDAI--GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i--~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~  273 (343)
                       -+..|+++.+......  .+......+.           ..+++.+.+.++.+|.+++.
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i  184 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT  184 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence             2467988876543210  0011111111           24556666777778877774

>PRK08703 short chain dehydrogenase; Provisional

Probab=81.16  E-value=11  Score=33.03  Aligned_cols=75  Identities=11%  Similarity=0.115  Sum_probs=48.1

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------------
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------------  226 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------------  226 (343)
                      ++++||-.||+.|   .++..++++|+ +|++++-++...+...+.+...+...+.++..|+.+..              
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            4578999997554   24455566676 79999999877666655544333235667777775421              


Q ss_pred             cCCCccEEEECcc
Q 019324          227 LERQFQLVMDKGT  239 (343)
Q Consensus       227 ~~~~fD~V~~~~~  239 (343)
                      ..+.+|+|+.+..
T Consensus        84 ~~~~id~vi~~ag   96 (239)
T PRK08703         84 TQGKLDGIVHCAG   96 (239)
T ss_pred             hCCCCCEEEEecc
Confidence            1146798887654

>PRK05993 short chain dehydrogenase; Provisional

Probab=81.15  E-value=24  Score=31.80  Aligned_cols=68  Identities=13%  Similarity=0.267  Sum_probs=45.5

Q ss_pred             CCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------------CC
Q 019324          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------ER  229 (343)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------------~~  229 (343)
                      +++||-.|++.|.   ++..+++.|+ +|++++-++..++..+.       ..+.++.+|+.+...            .+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~-------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g   75 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEA-------EGLEAFQLDYAEPESIAALVAQVLELSGG   75 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH-------CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4578888875442   3445556676 89999998876654432       246788889887520            14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        76 ~id~li~~Ag~   86 (277)
T PRK05993         76 RLDALFNNGAY   86 (277)
T ss_pred             CccEEEECCCc
Confidence            68999987543

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.06  E-value=33  Score=30.42  Aligned_cols=72  Identities=14%  Similarity=0.058  Sum_probs=46.1

Q ss_pred             CCCeEEEEccCc--c---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          164 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       164 ~~~~VLDiGcG~--G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .++++|-.|.++  |   .++..|++.|+ +|+.++.+....+.+++..   + .++.++.+|+.+...           
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV---D-EEDLLVECDVASDESIERAFATIKER   80 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc---c-CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899888763  3   34556666786 7888877644333333221   1 357889999987531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+.+|+++.+..+
T Consensus        81 ~g~iD~lv~nAg~   93 (252)
T PRK06079         81 VGKIDGIVHAIAY   93 (252)
T ss_pred             hCCCCEEEEcccc
Confidence            1578999987654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.05  E-value=19  Score=32.99  Aligned_cols=107  Identities=17%  Similarity=0.245  Sum_probs=60.3

Q ss_pred             CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc--------CC----------CceEEEEccCCCC
Q 019324          166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--------GF----------SCIKFLVDDVLDT  225 (343)
Q Consensus       166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~--------~~----------~~i~~~~~D~~~~  225 (343)
                      .+|.-||+|.-  .++..++..|. .|+.+|.++..++.++++....        ..          .++.+ ..|+.+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence            36888899853  34555566675 8999999999988887653211        00          12222 2222211


Q ss_pred             ccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          226 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       226 ~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                        -...|+|+..-.        ........+++++...++++.++...+......++.+
T Consensus        82 --~~~aDlVieavp--------e~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~  130 (287)
T PRK08293         82 --VKDADLVIEAVP--------EDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE  130 (287)
T ss_pred             --hcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh
Confidence              135688876321        1123345677888888887765544333333334443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.91  E-value=7.9  Score=35.34  Aligned_cols=107  Identities=19%  Similarity=0.265  Sum_probs=62.8

Q ss_pred             eEEEEccCc--cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHH-------HHcCC-C---------ceEEEEccCCCCcc
Q 019324          167 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLA-------NRDGF-S---------CIKFLVDDVLDTKL  227 (343)
Q Consensus       167 ~VLDiGcG~--G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~-------~~~~~-~---------~i~~~~~D~~~~~~  227 (343)
                      +|.=||+|.  +.++..++..|. +|+++|.++..++.+++++       ...+. .         ++.+ ..|...   
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---   79 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---   79 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence            577888883  455666777776 8999999999987655322       22221 0         2221 223211   


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~  286 (343)
                      -...|+|+..     +   ++.......+++++.+.++|+.++...+.......+...+
T Consensus        80 ~~~aDlVi~a-----v---~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~  130 (282)
T PRK05808         80 LKDADLVIEA-----A---TENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAAT  130 (282)
T ss_pred             hccCCeeeec-----c---cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhh
Confidence            2456888763     1   1222333477889999999998774444444444444433

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=80.87  E-value=20  Score=34.49  Aligned_cols=97  Identities=18%  Similarity=0.117  Sum_probs=64.4

Q ss_pred             eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCccCCCccEEEECccccccc
Q 019324          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~  244 (343)
                      +||-++=.-|.++..++..+.   +.+-=|--+-...+.|+..++++  .+++.  +.... +++.+|+|+..-      
T Consensus        47 ~~~i~nd~fGal~~~l~~~~~---~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~-~~~~~d~vl~~~------  114 (378)
T PRK15001         47 PVLILNDAFGALSCALAEHKP---YSIGDSYISELATRENLRLNGIDESSVKFL--DSTAD-YPQQPGVVLIKV------  114 (378)
T ss_pred             CEEEEcCchhHHHHHHHhCCC---CeeehHHHHHHHHHHHHHHcCCCcccceee--ccccc-ccCCCCEEEEEe------
Confidence            799999999999999996543   23322334445566788888874  24343  33332 455699988632      


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                        |.........+..+..+|.||+.++...-..
T Consensus       115 --PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k  145 (378)
T PRK15001        115 --PKTLALLEQQLRALRKVVTSDTRIIAGAKAR  145 (378)
T ss_pred             --CCCHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence              2233455667889999999999987655443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.86  E-value=14  Score=34.05  Aligned_cols=108  Identities=16%  Similarity=0.248  Sum_probs=65.3

Q ss_pred             CeEEEEccCc--cHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-------cCC----------CceEEEEccCCCCc
Q 019324          166 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DGF----------SCIKFLVDDVLDTK  226 (343)
Q Consensus       166 ~~VLDiGcG~--G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-------~~~----------~~i~~~~~D~~~~~  226 (343)
                      .+|--||+|+  +.++..++..|+ .|+.+|.++..++.+++++..       .|.          .+++ ...|...  
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~--   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD--   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH--
Confidence            3788899984  345666677786 899999999999987765332       111          0121 1223211  


Q ss_pred             cCCCccEEEECccccccccCCCChhhHHHHHHHHhhcc-CCCcEEEEEecCCChHHHHHHH
Q 019324          227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       227 ~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~L-kpgG~lii~~~~~~~~~~~~~~  286 (343)
                       -...|+|+..     +   ++.......++..+-+++ +|+.++...+.......+....
T Consensus        82 -~~~~d~ViEa-----v---~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~  133 (286)
T PRK07819         82 -FADRQLVIEA-----V---VEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAAT  133 (286)
T ss_pred             -hCCCCEEEEe-----c---ccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc
Confidence             1456888763     2   233344456778888888 7776666555555555555433

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=80.81  E-value=2.8  Score=40.30  Aligned_cols=62  Identities=13%  Similarity=0.258  Sum_probs=50.4

Q ss_pred             CCCceEEEEccCCCCc---cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          211 GFSCIKFLVDDVLDTK---LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       211 ~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++++++++.+++.+..   .++++|.++....++++.     +......++++.+.++|||++++-+...
T Consensus       273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~-----~~~~~~~~~~l~~~~~pgaRV~~Rsa~~  337 (380)
T PF11899_consen  273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMD-----PEQLNEEWQELARTARPGARVLWRSAAV  337 (380)
T ss_pred             CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCC-----HHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence            4468999999988753   368999999988888773     4777889999999999999999965543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK06125 short chain dehydrogenase; Provisional

Probab=80.80  E-value=13  Score=33.17  Aligned_cols=75  Identities=13%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCCccE
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQL  233 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~fD~  233 (343)
                      .++++|-.|++.|   .++..+++.|+ +|++++.++...+.+.+.+......++.++..|+.+...       -+..|+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            4678999997655   23445666787 899999998777666555443322367888999876531       257899


Q ss_pred             EEECcc
Q 019324          234 VMDKGT  239 (343)
Q Consensus       234 V~~~~~  239 (343)
                      ++.+..
T Consensus        85 lv~~ag   90 (259)
T PRK06125         85 LVNNAG   90 (259)
T ss_pred             EEECCC
Confidence            887654

>PRK09291 short chain dehydrogenase; Provisional

Probab=80.54  E-value=11  Score=33.22  Aligned_cols=73  Identities=16%  Similarity=0.316  Sum_probs=49.3

Q ss_pred             CeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----cCCCccEEEEC
Q 019324          166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDK  237 (343)
Q Consensus       166 ~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~V~~~  237 (343)
                      ++||-.|++.|.   ++..|++.|+ +|++++-++...+..+......+. ++.++.+|+.+..     .....|+|+.+
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            478888885542   3445556676 899999887766665555444443 6888999988753     13478999987


Q ss_pred             ccc
Q 019324          238 GTL  240 (343)
Q Consensus       238 ~~l  240 (343)
                      ...
T Consensus        81 ag~   83 (257)
T PRK09291         81 AGI   83 (257)
T ss_pred             CCc
Confidence            543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=80.47  E-value=11  Score=38.60  Aligned_cols=93  Identities=14%  Similarity=0.136  Sum_probs=57.5

Q ss_pred             CCeEEEEccCccHHHHHHH----hcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEE
Q 019324          165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  235 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la----~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~  235 (343)
                      ..+|+=+|+|  .++..++    ++|. .++.+|.++..++.+++       .....+.+|..+...     -+..|+++
T Consensus       400 ~~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~-------~g~~v~~GDat~~~~L~~agi~~A~~vv  469 (601)
T PRK03659        400 KPQVIIVGFG--RFGQVIGRLLMANKM-RITVLERDISAVNLMRK-------YGYKVYYGDATQLELLRAAGAEKAEAIV  469 (601)
T ss_pred             cCCEEEecCc--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh-------CCCeEEEeeCCCHHHHHhcCCccCCEEE
Confidence            3467766665  4444443    3455 89999999999998875       256789999998642     24677777


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +.     +    +++.... .+-...|.+.|...++....+.
T Consensus       470 ~~-----~----~d~~~n~-~i~~~~r~~~p~~~IiaRa~~~  501 (601)
T PRK03659        470 IT-----C----NEPEDTM-KIVELCQQHFPHLHILARARGR  501 (601)
T ss_pred             EE-----e----CCHHHHH-HHHHHHHHHCCCCeEEEEeCCH
Confidence            52     1    1112222 2234455567887777654443

>PLN02827 Alcohol dehydrogenase-like

Probab=80.31  E-value=9  Score=36.60  Aligned_cols=98  Identities=20%  Similarity=0.160  Sum_probs=56.2

Q ss_pred             ccCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEE--ccCCCC-c--cCCCcc
Q 019324          161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV--DDVLDT-K--LERQFQ  232 (343)
Q Consensus       161 ~~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~--~D~~~~-~--~~~~fD  232 (343)
                      ...++.+||-.|+| .|.++..+++. |...|+++|.++.-.+.+++    .|.+. +....  .+.... .  ..+.+|
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d  265 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGAD  265 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence            34678899999874 23344445554 76569999999887777754    23321 11110  011000 0  123688


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEec
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  275 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~  275 (343)
                      +|+....-          .   ..+....+.|++| |++++...
T Consensus       266 ~vid~~G~----------~---~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        266 YSFECVGD----------T---GIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             EEEECCCC----------h---HHHHHHHHhhccCCCEEEEECC
Confidence            88863221          0   1346778889998 99987543

>PRK06182 short chain dehydrogenase; Validated

Probab=80.18  E-value=22  Score=31.93  Aligned_cols=68  Identities=21%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             CCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCC
Q 019324          165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ  230 (343)
Q Consensus       165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~  230 (343)
                      +++||-.|++.|   .++..+++.|+ +|++++-++..++....       .++.++.+|+.+...           .+.
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~-------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~   74 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLAS-------LGVHPLSLDVTDEASIKAAVDTIIAEEGR   74 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            457888887544   23444455676 89999988766543321       257788899887531           146


Q ss_pred             ccEEEECccc
Q 019324          231 FQLVMDKGTL  240 (343)
Q Consensus       231 fD~V~~~~~l  240 (343)
                      .|+++.+...
T Consensus        75 id~li~~ag~   84 (273)
T PRK06182         75 IDVLVNNAGY   84 (273)
T ss_pred             CCEEEECCCc
Confidence            8999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	2e-26
3lcc_A	235	Putative methyl chloride transferase; halide methy	5e-14
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	3e-13
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	2e-12
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-12
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	4e-12
2p7i_A	250	Hypothetical protein; putative methyltransferase,	8e-12
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-11
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	3e-11
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	3e-11
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	6e-11
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	1e-10
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-10
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-10
3cc8_A	230	Putative methyltransferase; structural genomics, j	2e-10
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	3e-10
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-10
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	5e-10
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	8e-10
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	9e-10
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-09
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-09
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	4e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	6e-09
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	8e-09
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	2e-08
3ocj_A	305	Putative exported protein; structural genomics, PS	5e-08
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	6e-08
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	7e-08
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	7e-08
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	7e-08
3f4k_A	257	Putative methyltransferase; structural genomics, P	8e-08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	9e-08
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	9e-08
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	1e-07
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	4e-07
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	4e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	4e-07
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	8e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	9e-07
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-06
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-06
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-06
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	3e-06
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	5e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	7e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	9e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	1e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-05
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-05
2b3t_A	276	Protein methyltransferase HEMK; translation termin	2e-05
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	2e-05
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	4e-05
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	6e-05
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	6e-05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	7e-05
3i9f_A	170	Putative type 11 methyltransferase; structural gen	7e-05
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	8e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	9e-05
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	9e-05
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	1e-04
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	1e-04
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	1e-04
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	1e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-04
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	2e-04
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	2e-04
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	2e-04
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	2e-04
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	3e-04
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	3e-04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	3e-04
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	3e-04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	4e-04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	5e-04
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	6e-04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	6e-04
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	8e-04

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score =  103 bits (258), Expect = 2e-26
 Identities = 48/221 (21%), Positives = 70/221 (31%), Gaps = 49/221 (22%)

Query: 89  ASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHV 148
            S      YWD  Y            A   WFG                        +  
Sbjct: 1   GSGYREVEYWDQRYQ------GAADSAPYDWFGDF----------------------SSF 32

Query: 149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
             L    +   D+      +L +G GN  L  EL   GF ++T VDYS   +   Q  A 
Sbjct: 33  RALLEPELRPEDR------ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQ--AC 84

Query: 209 RDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPDGPLKRIM--------YWDS 259
                 +++   DV         F +V++KGTLDA+      P                 
Sbjct: 85  YAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSE 144

Query: 260 VSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEH 300
           VS+++ PGG  +  +  +      H     +Q   G S  H
Sbjct: 145 VSRVLVPGGRFISMTSAAPHFRTRH----YAQAYYGWSLRH 181

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 69.7 bits (170), Expect = 5e-14
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT 225
             L  G G G  +  ++      + G+D SE A+  A         +    F+ +DV   
Sbjct: 69  RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW 127

Query: 226 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
           +    F L+ D     AI      P  R  +  S+ +L+ P G L+ 
Sbjct: 128 RPTELFDLIFDYVFFCAIE-----PEMRPAWAKSMYELLKPDGELIT 169

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 7/164 (4%)

Query: 117 EVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNG 176
           + W   + +      T              +        V +  K +S   VLD+G G G
Sbjct: 73  QAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132

Query: 177 LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD 236
                LS  G+ D+T  D++E++I        ++  + I   + D+    ++  +  ++ 
Sbjct: 133 RNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLN-ISTALYDINAANIQENYDFIVS 190

Query: 237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280
                   L+ +   +      ++ +    GG  +I +  ST D
Sbjct: 191 TVVFMF--LNRE---RVPSIIKNMKEHTNVGGYNLIVAAMSTDD 229

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VLD+  G G+   EL+++G+ ++ G+D  E+ + +A+  A       I+FL  DVL+  
Sbjct: 44  RVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLK-IEFLQGDVLEIA 101

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
            + +F  V        I    +  L+++     V++ + PGG+ + 
Sbjct: 102 FKNEFDAVTM--FFSTIMYFDEEDLRKLF--SKVAEALKPGGVFIT 143

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
             LD+  G G L + L  +   +   VD S++ ++ A++     G    +    D+ +  
Sbjct: 40  DYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLK-PRLACQDISNLN 97

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
           + R+F L+     LD+   +         Y+ +VS  +  GG+ + 
Sbjct: 98  INRKFDLIT--CCLDSTN-YIIDSDDLKKYFKAVSNHLKEGGVFIF 140

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 63.6 bits (155), Expect = 4e-12
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
            LD+G GNG     L+  G+ D+   D +  +I   + + + +    +   V D+ +   
Sbjct: 36  TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF 94

Query: 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280
           +RQ+  ++    L    +  +          ++ +   PGG  +I +   T D
Sbjct: 95  DRQYDFILSTVVL----MFLEAKT-IPGLIANMQRCTKPGGYNLIVAAMDTAD 142

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 63.7 bits (155), Expect = 8e-12
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 27/126 (21%)

Query: 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD 220
            +    ++L++G+  G     L +    D+T V+ SE+AI+ AQ          I ++  
Sbjct: 39  PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDG----ITYIHS 93

Query: 221 DVLDTKLERQFQLVMDKGTLDAIGL--------HPDGPLKRIMYWDSVSKLVAPGGLLVI 272
              D +L R++         D I L         P   LKRI         +A GG L +
Sbjct: 94  RFEDAQLPRRY---------DNIVLTHVLEHIDDPVALLKRIN-----DDWLAEGGRLFL 139

Query: 273 TSCNST 278
              N+ 
Sbjct: 140 VCPNAN 145

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           + L+IG   G   ++L+      LT +D    AI  A        +S I +   D+L   
Sbjct: 54  NGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRAC--QRTKRWSHISWAATDILQFS 110

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278
               F L+     +  +  + +   +     D++ K++APGG LV  S    
Sbjct: 111 TAELFDLI----VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 14/147 (9%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           S+LD+  G G  L+  +K+   D  G++ SED +  A+                D+ D +
Sbjct: 43  SLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPD-----ATLHQGDMRDFR 96

Query: 227 LERQFQLVMDKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285
           L R+F  V+      ++G L     L   +   S ++ + PGG++V+      +      
Sbjct: 97  LGRKFSAVVS--MFSSVGYLKTTEELGAAV--ASFAEHLEPGGVVVVEPWWFPETFADGW 152

Query: 286 VSNLSQRRIGVS---QEHEIKDEEACR 309
           VS    RR G +     H +++  A R
Sbjct: 153 VSADVVRRDGRTVARVSHSVREGNATR 179

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 8/141 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            + DIG G G     L+   + ++TGVD SE+ + +AQ  A       + F V D+ + +
Sbjct: 36  RIADIGCGTGTATLLLAD-HY-EVTGVDLSEEMLEIAQEKAMETNRH-VDFWVQDMRELE 92

Query: 227 LERQFQLVMDKGTLDAIGLHPDGP-LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285
           L      +      D++        +K+    DS ++L+  GG L+    +  K E +  
Sbjct: 93  LPEPVDAITI--LCDSLNYLQTEADVKQTF--DSAARLLTDGGKLLFDVHSPYKMETLFN 148

Query: 286 VSNLSQRRIGVSQEHEIKDEE 306
               +      S        E
Sbjct: 149 GKTYATHAEQSSYIWFADPGE 169

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 61.5 bits (149), Expect = 6e-11
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC---IKFLVDDVL 223
            VL++  G G L       G+ ++T ++ S   +   +                +  D+ 
Sbjct: 85  PVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143

Query: 224 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
              L+++F  V+   +  +I    +   + +    SV + + PGG  ++
Sbjct: 144 AFALDKRFGTVVI--SSGSINELDEADRRGLY--ASVREHLEPGGKFLL 188

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 60.1 bits (145), Expect = 1e-10
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            ++D   GNG   + LS+     + G+D S+ A+ +A           I + + D L  +
Sbjct: 59  PLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAAN---ISYRLLDGLVPE 114

Query: 227 LERQFQL-VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285
              Q    + D       G H     KR +   S+  L+   G + +    +   +  + 
Sbjct: 115 QAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNS 174

Query: 286 V 286
           +
Sbjct: 175 L 175

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 60.5 bits (146), Expect = 1e-10
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT 225
           SVLD+G G G  L +  + G  +  GVD +E +IN A+  A        + F   D    
Sbjct: 67  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 126

Query: 226 KLE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277
            ++  ++F ++    +  +            +   ++++ + PGG  ++T  + 
Sbjct: 127 HMDLGKEFDVIS---SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           S+LD+  G G+ L+ L+      + G++ S D + +A+                D+ D  
Sbjct: 53  SLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPD-----AVLHHGDMRDFS 106

Query: 227 LERQFQLVMDKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285
           L R+F  V       +IG L     L   +  +  +  V P G++V+      ++     
Sbjct: 107 LGRRFSAVTC--MFSSIGHLAGQAELDAAL--ERFAAHVLPDGVVVVEPWWFPENFTPGY 162

Query: 286 VSNLSQRRIG---VSQEHEIKDEEACR 309
           V+  +    G       H  ++ EA R
Sbjct: 163 VAAGTVEAGGTTVTRVSHSSREGEATR 189

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 29/143 (20%)

Query: 142 GHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           GH  N V     + +++  K      VLDIG  +G L   + + G   ++G++   +A  
Sbjct: 15  GHYYNAVNPNLLKHIKKEWK-----EVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAE 68

Query: 202 LAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL-----H-PDGPLKRIM 255
            A+           K     + D +      +  ++   D +       H  D P     
Sbjct: 69  QAKE----------KLDHVVLGDIETM---DMPYEEEQFDCVIFGDVLEHLFD-PWA--- 111

Query: 256 YWDSVSKLVAPGGLLVITSCNST 278
             + V   +   G+++ +  N +
Sbjct: 112 VIEKVKPYIKQNGVILASIPNVS 134

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212
           ++ +      +    +L +  G G     L+  G+ ++T VD S   +  A+ LA   G 
Sbjct: 18  NDFLVSVANQIPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV 76

Query: 213 SCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLV 271
             I  +  ++ D  +    ++ ++       I  H    L R   +  V + + PGG+ +
Sbjct: 77  K-ITTVQSNLADFDIVADAWEGIVS------IFCHLPSSL-RQQLYPKVYQGLKPGGVFI 128

Query: 272 I 272
           +
Sbjct: 129 L 129

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           +VLD G G  L    +  +      G++ S+  +  A++ +  + F        D+    
Sbjct: 26  TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKL-NISKGDIRKLP 84

Query: 227 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281
            +      V   GT+     H      +    D + +++ PGGL  I    +  + 
Sbjct: 85  FKDESMSFVYSYGTI----FHMRKNDVKEAI-DEIKRVLKPGGLACINFLTTKDER 135

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 58.0 bits (140), Expect = 5e-10
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VLDIG G G  L+   ++G  +  GVD +ED I           F+ +K    + L + 
Sbjct: 44  RVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFC-----EGKFNVVKSDAIEYLKSL 97

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276
            ++    VM    ++   L P+   + +         +     +VI S N
Sbjct: 98  PDKYLDGVMISHFVEH--LDPERLFELL---SLCYSKMKYSSYIVIESPN 142

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VL++ +G G   + LS      +T +D S + I  A     R G   ++F   D+ D  
Sbjct: 49  DVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAG----RHGLDNVEFRQQDLFDWT 103

Query: 227 LERQFQLVMDKGTLDAIGLH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285
            +RQ+  V     L     H PD   +    W+SV   VAPGG++        +  L  +
Sbjct: 104 PDRQWDAVFFAHWL----AHVPDDRFEAF--WESVRSAVAPGGVVEFVDVTDHERRLEQQ 157

Query: 286 V 286
            
Sbjct: 158 D 158

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            +LD+G G GLL   L ++   +  T VD SE  + +A++     G   +K++  D    
Sbjct: 47  DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR--GNLKVKYIEADYSKY 104

Query: 226 KLERQFQLVMDKGTLDAIGLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD--- 280
             E ++ +V     + A+ +H   D   K +        ++   G+ +       +    
Sbjct: 105 DFEEKYDMV-----VSALSIHHLEDEDKKELY--KRSYSILKESGIFINADLVHGETAFI 157

Query: 281 -ELVHEVSNLSQRRIGVSQEH 300
             L   +        G+++E 
Sbjct: 158 ENLNKTIWRQYVENSGLTEEE 178

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           VLD+  G G     L   GF ++ GVD SED I  A+  A     + ++F+V D      
Sbjct: 42  VLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESN-VEFIVGDARKLSF 99

Query: 228 E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 279
           E + F  V+    +D+I       L ++     V +++ P G  ++   +  +
Sbjct: 100 EDKTFDYVI---FIDSIVHFEPLELNQVF--KEVRRVLKPSGKFIMYFTDLRE 147

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           +VL+ G G G L  +L   G   + G++ S +   +A+    ++          D L  +
Sbjct: 48  NVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKE----FSITEGDFLSFE 102

Query: 227 LERQFQLVMDKGTLDAI----GLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280
           +             D I      H   D   K +      S+L+  GG +V         
Sbjct: 103 VPTSI---------DTIVSTYAFHHLTD-DEKNVAI-AKYSQLLNKGGKIVFADTIFADQ 151

Query: 281 ELVHEVSNLSQRRIGVSQEHEIKDE 305
           +   +    +++R      ++++ E
Sbjct: 152 DAYDKTVEAAKQRGFHQLANDLQTE 176

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 55.0 bits (132), Expect = 4e-09
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 167 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            V+D+G G G LL  L K   F  +TGVD S   +  A+     D    ++     +  +
Sbjct: 32  KVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91

Query: 226 KLE------RQFQLVMDKGTLDAIGLH-PDGPLKRIMYWDSVSKLVAPGGLLVIT 273
            L         +       T+  +  H  +  L+       + +   P  ++V T
Sbjct: 92  SLVYRDKRFSGYDAA----TVIEVIEHLDENRLQAFE--KVLFEFTRPQTVIVST 140

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 10/123 (8%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 226
           + DIG G G     L+      +TG+D+    I++    A + G    +  +V  + D  
Sbjct: 50  IADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109

Query: 227 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285
               +  L+  +G +  IG       +R +  +   K +  GG L ++ C+   DE   E
Sbjct: 110 FRNEELDLIWSEGAIYNIG------FERGL--NEWRKYLKKGGYLAVSECSWFTDERPAE 161

Query: 286 VSN 288
           +++
Sbjct: 162 IND 164

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            +LD G G G +   LSKQG  D+ G D     I+ A     +  F   +++V D+   +
Sbjct: 49  KILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYA-----KQDFPEARWVVGDLSVDQ 102

Query: 227 L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273
           + E  F L++  G +  +G   +   +  +   ++ + +   G  VI 
Sbjct: 103 ISETDFDLIVSAGNV--MGFLAEDGREPAL--ANIHRALGADGRAVIG 146

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 11/124 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------RDGFSCIKFLVD 220
            VL I  GNG  L++      + L   D   DAI       N      +  +    ++ +
Sbjct: 51  KVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQE 110

Query: 221 DVLDTKLERQFQLVMDKGTLDAI----GLH-PDGPLKRIMYWDSVSKLVAPGGLLVITSC 275
            +         + V   G  + I     +H    P       +++S+L A GG ++IT+ 
Sbjct: 111 TIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170

Query: 276 NSTK 279
           +  K
Sbjct: 171 DGDK 174

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVL 223
            V  +  G    L  L         L G+DY  +A++ A  LA     +  I     D  
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180

Query: 224 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
                  + L+   G      ++     +    +    + + PGG LV 
Sbjct: 181 KLDTREGYDLLTSNGLN----IYEPDDARVTELYRRFWQALKPGGALVT 225

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           +VLD+G G G      ++ G   + G+D SE  +  A+          + +    + D  
Sbjct: 47  TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPV---VCYEQKAIEDIA 103

Query: 227 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273
           +E   + +V+   +  A+          I     V   +   G  + +
Sbjct: 104 IEPDAYNVVL---SSLALHYIAS--FDDICK--KVYINLKSSGSFIFS 144

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 51.5 bits (123), Expect = 7e-08
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 167 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            V+D+G G G LL+ L K   F  +TGVD S  ++ +AQ   +R      ++    ++  
Sbjct: 32  RVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG 91

Query: 226 KLERQFQLVMDKGTLDAI----GLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273
            L             DA      +      +   +   + +   P  ++V T
Sbjct: 92  ALT---YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK 226
           +LD+G+G+G +L   ++      TG+D S      A+  A   G S  + F+ +D     
Sbjct: 40  ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 99

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275
              +  +    G     G             + +++ + PGG+++I   
Sbjct: 100 ANEKCDVAACVGATWIAGGFAG-------AEELLAQSLKPGGIMLIGEP 141

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 22/152 (14%)

Query: 138 SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLL-------LQELSKQGFSDL 190
           S     M   ++      +       S   +L IG G G +       +Q        + 
Sbjct: 26  STEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINN 85

Query: 191 TGVDYSEDAINLAQSL-ANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI----GL 245
             V+ S + I   + L A       +KF       ++ + +     +    D I     L
Sbjct: 86  EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML 145

Query: 246 H----PDGPLKRIMYWDSVSKLVAPGGLLVIT 273
           +        LK          L+     ++I 
Sbjct: 146 YYVKDIPATLKFFH------SLLGTNAKMLII 171

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 226
           + DIG G G     L+      +TG+D   D I +    A +   +  +K +   + +  
Sbjct: 50  IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109

Query: 227 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285
            +  +  L+  +G +  IG   +  +          K +  GG + ++  +    E   E
Sbjct: 110 FQNEELDLIWSEGAIYNIG--FERGMNEWS------KYLKKGGFIAVSEASWFTSERPAE 161

Query: 286 VSNLSQRRIG 295
           + +       
Sbjct: 162 IEDFWMDAYP 171

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 51.9 bits (124), Expect = 9e-08
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 32/130 (24%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VLD+  G G+    L ++GF  +T VD S+  +  A             F    + +  
Sbjct: 60  RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEAN 117

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDS--------------------VSKLVAP 266
                + V      DA+          I   +S                    ++ +V P
Sbjct: 118 WLTLDKDVPAGDGFDAV----------ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 167

Query: 267 GGLLVITSCN 276
           GGLLVI   N
Sbjct: 168 GGLLVIDHRN 177

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 18/110 (16%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           VLD+G G G LL+ L+ +G  +  GVD     ++ A++    +      +         +
Sbjct: 56  VLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHL-ASYAQLAEAKVPV 113

Query: 228 ERQFQLVMDKGTLDAI----GLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273
            + +         D I     L     ++ +    ++  L+ PGG LVI 
Sbjct: 114 GKDY---------DLICANFALLHQDIIELL---SAMRTLLVPGGALVIQ 151

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 12/107 (11%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            +L++G G G   + +   GF D+   D S +    A     R                 
Sbjct: 46  KILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRP------VRTMLFHQLD 98

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273
               +  V     L  + +  D   +       + + + PGGL   +
Sbjct: 99  AIDAYDAVWAHACL--LHVPRD---ELADVLKLIWRALKPGGLFYAS 140

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 13/151 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGFSCIKFLV 219
           +VLD+G G G  L +  K   + L   D ++ ++   Q            +     +F+ 
Sbjct: 37  TVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT 96

Query: 220 DDVLDTKLERQFQLVMDKGTL----DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275
            D     L  +F+       +           +   +  M   +  + ++PGG  + T+ 
Sbjct: 97  ADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156

Query: 276 NSTKDELVHEVSNLSQRRIGVSQEHEIKDEE 306
           NS   EL+  +        G         ++
Sbjct: 157 NS--FELIRRLEASETESFGNEIYTVKFQKK 185

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 226
            LD+G G G   + L ++    +  ++ +       +   N+ G +  I       L+  
Sbjct: 86  GLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145

Query: 227 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280
            E   +  +    + DA    PD    ++  +   ++++ P G++ IT       
Sbjct: 146 CEDNSYDFIW---SQDAFLHSPD----KLKVFQECARVLKPRGVMAITDPMKEDG 193

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 26/184 (14%)

Query: 143 HMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 202
             ++   D  +E +++         V+D   GNG     L+      +   D  E A+  
Sbjct: 7   RPIHMSHDFLAEVLDDESI------VVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGK 59

Query: 203 AQSLANRDGFSCIKFLVDDV--LDTKLERQ-----FQLVMDKGTLDAIGLHPDGPLKRIM 255
                +  G    + ++D    LD  +        F L        ++   P   L+ I 
Sbjct: 60  TSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAI- 118

Query: 256 YWDSVSKLVAPGGLLVITS---CNSTKDE---LVHEVSNLSQRRIGVSQEHEIKDEEACR 309
             + +   +  GG L I      +    E   ++  V  L QR         +       
Sbjct: 119 --EKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPL---NQIN 173

Query: 310 EPPF 313
            PPF
Sbjct: 174 TPPF 177

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 48.8 bits (116), Expect = 8e-07
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
            ++D G G G L   L       S  TG+D  E  +  A+ L     +   +FL  D  +
Sbjct: 25  HIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD-SEFLEGDATE 83

Query: 225 TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276
            +L  ++ + +    L    LH   P   +       K    GG ++    +
Sbjct: 84  IELNDKYDIAICHAFL----LHMTTPETMLQKMIHSVK---KGGKIICFEPH 128

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 23/116 (19%)

Query: 167 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            VL+ G G G     L+K     ++T +D S +++  A+    ++G   +KFL  ++   
Sbjct: 40  KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99

Query: 226 KLERQFQLVMDKGTLDAI----GLH----PDGPLKRIMYWDSVSKLVAPGGLLVIT 273
             E       D  + D I     L     P+  LK +       K++ PGG + + 
Sbjct: 100 PFE-------D-SSFDHIFVCFVLEHLQSPEEALKSLK------KVLKPGGTITVI 141

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            ++D+G G G   +   + G S + G+D SE  +  A++     G   I +   D+    
Sbjct: 46  RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG---ITYERADLDKLH 102

Query: 227 L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273
           L +  F L     +  A+    D  + R+    +V + ++PGG  V +
Sbjct: 103 LPQDSFDLAY---SSLALHYVED--VARLF--RTVHQALSPGGHFVFS 143

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           VLD+G G+G    +LS+ G+    GVD SE  I   +          + F+  D+     
Sbjct: 57  VLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPD---LSFIKGDLSSLPF 112

Query: 228 E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 286
           E  QF+ +M   +L+     P   L  I       +++   G   I     T     +  
Sbjct: 113 ENEQFEAIMAINSLEWTE-EPLRALNEIK------RVLKSDGYACIAILGPTAKPRENSY 165

Query: 287 SNL 289
             L
Sbjct: 166 PRL 168

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           VLDIG+G G     ++++  +   G+D   + +N+A    + +    I F  +D+L  + 
Sbjct: 59  VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNK--IIFEANDILTKEF 116

Query: 228 E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 281
               F L+  +  + A+    +    +   +    K + P G L+IT   +T+ E
Sbjct: 117 PENNFDLIYSRDAILALS-LEN----KNKLFQKCYKWLKPTGTLLITDYCATEKE 166

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 28/196 (14%), Positives = 70/196 (35%), Gaps = 22/196 (11%)

Query: 110 REHGHAGEVW---FGADVMDVVASWTKSL-----CISISQGHMLNHVEDLKSEPVEENDK 161
           + +    E+W      D+ D    W          +  +   +L  ++ +    +E +  
Sbjct: 25  KTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRN 84

Query: 162 YLSSW------SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI 215
           +++S         LD G G G + + L  + ++    ++  +  +  A+      G    
Sbjct: 85  FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA--GMPVG 142

Query: 216 KFLVDDVLDTKLERQ-FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 274
           KF++  +    L    + L++ + T   +    D    +  ++    + + P G +    
Sbjct: 143 KFILASMETATLPPNTYDLIVIQWTAIYL---TDADFVK--FFKHCQQALTPNGYIFFKE 197

Query: 275 CNSTKDELVHEVSNLS 290
             ST D  + +  + S
Sbjct: 198 NCSTGDRFLVDKEDSS 213

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDV 222
              +LD+G G G++   L+ +     T  D +  AI LA+     +      I+ +  D+
Sbjct: 53  DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111

Query: 223 LDTKLERQFQLV 234
            +   +R++  +
Sbjct: 112 YENVKDRKYNKI 123

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 16/117 (13%)

Query: 167 SVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQS------LANRDGFSCIKFL 218
           +++D G G+G LL  L         + GVD S   +  A                     
Sbjct: 724 TLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY 783

Query: 219 VDDVLDTKLE-RQFQLVMDKGTLDAIGLH-PDGPLKRIMYWDSVSKLVAPGGLLVIT 273
              +L+         +     T   +  H  +         + V  L  P  L+V T
Sbjct: 784 DGSILEFDSRLHDVDIG----TCLEVIEHMEEDQACEFG--EKVLSLFHPKLLIVST 834

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 223
            +   LD G G G + + L    F ++  VD +ED +  A++    +G     +    + 
Sbjct: 79  GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 138

Query: 224 DTKLER-QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 282
           D   E   + ++  +  +  +    D  L    +       + P G++VI    + +  +
Sbjct: 139 DFTPEPDSYDVIWIQWVIGHL---TDQHLAE--FLRRCKGSLRPNGIIVIKDNMAQEGVI 193

Query: 283 VHEV 286
           + +V
Sbjct: 194 LDDV 197

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 226
           VLD+G G G     L+      +TG+  S   +N A + A   G +  + F   D +D  
Sbjct: 65  VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124

Query: 227 LERQFQLVMDKGTLDAI-----GLH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280
            E          + DA+       H PD    R      +++++ PGG + I        
Sbjct: 125 FE--------DASFDAVWALESLHHMPD----RGRALREMARVLRPGGTVAIADFVLLAP 172

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 22/112 (19%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           +LD+G+G G     L+  G   + G++ +   + LA     R     + F    + D   
Sbjct: 45  ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELA-----RQTHPSVTFHHGTITDLSD 98

Query: 228 ERQFQLVMDKGTLDAI----GLH--PDGPLKRIMYWDSVSKLVAPGGLLVIT 273
                          +     L     G L   +   ++   V  GG L+++
Sbjct: 99  SP--------KRWAGLLAWYSLIHMGPGELPDAL--VALRMAVEDGGGLLMS 140

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 221
           +++ + +DIG+G G L   L+KQ    +  +D+S+    +A         +  I+ +  D
Sbjct: 42  ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101

Query: 222 VLD 224
           V +
Sbjct: 102 VHN 104

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 29/207 (14%), Positives = 65/207 (31%), Gaps = 39/207 (18%)

Query: 137 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSD--LTGVD 194
           +S++  + L    D     V+E D       V+D   GNG     L+     +  + G D
Sbjct: 1   MSLTIKNSLGQSHDYIKMFVKEGDT------VVDATCGNGNDTAFLASLVGENGRVFGFD 54

Query: 195 YSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQ-------FQLVMDKGTLDAIGLH 246
             + AI               +  + D   +             F L        +I   
Sbjct: 55  IQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTR 114

Query: 247 PDGPLKRIMYWDSVSKLVAPGGLLVIT---SCNSTKDE---LVHEVSNLSQRRIGVSQEH 300
           P+  ++ +       +L+  GG++ +      ++  +E   ++  +  + Q++  V +  
Sbjct: 115 PETTIQAL---SKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQR-- 169

Query: 301 EIKDEEACREPPFRYLNHVRTYPTFMF 327
                         ++N     P  + 
Sbjct: 170 ------------TDFINQANCPPILVC 184

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 21/110 (19%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           +LD+G G G L +++++ G +++ G D +   I  A     R  +  + F V D  + ++
Sbjct: 61  ILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKA-----RQNYPHLHFDVADARNFRV 114

Query: 228 ERQFQLVMDKGTLDAIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVIT 273
           ++    V          LH    P+  +  I       + +  GG  V  
Sbjct: 115 DKPLDAV-----FSNAMLHWVKEPEAAIASIH------QALKSGGRFVAE 153

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 167 SVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSL--ANRDGFSCIKFLVDDV 222
            ++D+G G G    +++++   F  + G D S   I  A+ +   + D +  + F +   
Sbjct: 39  LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS 98

Query: 223 LDTKLERQFQLVMDKGTLDAI----GLH-PDGPLKRIMYWDSVSKLVAPGGLLVI 272
            D   +      +DK  +D I      H  D       +  S    +   G + I
Sbjct: 99  DD--FKFLGADSVDKQKIDMITAVECAHWFDFEK----FQRSAYANLRKDGTIAI 147

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 23/149 (15%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
             VLDIG G G      S     +  GVD +++ + +A S A   G   ++F        
Sbjct: 23  HRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES- 80

Query: 226 KLERQFQLVMDKGTLDAI----GLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277
                  L     + D I      H        ++       V++++   G  ++    +
Sbjct: 81  -------LPFPDDSFDIITCRYAAHHFSDVRKAVR------EVARVLKQDGRFLLVDHYA 127

Query: 278 TKDELVHEVSNLSQRRIGVSQEHEIKDEE 306
            +D ++ E  N   R    S   E    E
Sbjct: 128 PEDPVLDEFVNHLNRLRDPSHVRESSLSE 156

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 165 SWSVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD 220
              +LD+GTG G     L  E       ++  VD   DA++LAQ  A       I  L  
Sbjct: 110 PCRILDLGTGTGAIALALASERPD---CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS 166

Query: 221 DVLDTKLERQFQLV 234
           D       +QF ++
Sbjct: 167 DWFSALAGQQFAMI 180

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 18/117 (15%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 226
           ++D G G G  +    ++  S + GV  S    +     A        ++  V ++LDT 
Sbjct: 121 LVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180

Query: 227 LERQFQLVMDKGTLDAIG-----LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278
            +        KG + A       ++ D        +   S+ +  GG  V  +    
Sbjct: 181 FD--------KGAVTASWNNESTMYVDLHD----LFSEHSRFLKVGGRYVTITGCWN 225

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 17/129 (13%)

Query: 151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 210
           L++       + +    VLD+G G G L   L++   +++ GV+    ++   Q     +
Sbjct: 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEAN 278

Query: 211 GFSCIKFLVDDVLDTKLERQFQLVM-------DKGTLDAIGLHPDGPLKRIMYWDSVSKL 263
                    D       E +F +++           +  +               + ++L
Sbjct: 279 ALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQA--------FVNVAAARL 330

Query: 264 VAPGGLLVI 272
             PGG+  +
Sbjct: 331 -RPGGVFFL 338

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 13/106 (12%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           +V D+GTG+G+L     K G   +   D S++++  A+  A  +G   I      +L   
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA-D 121

Query: 227 LERQFQLVMDKGTLDA-IGLHPDGPLKRIMYWDSVSKLVAPGGLLV 271
           ++ +F L++      A I L     L  ++    +   +   G ++
Sbjct: 122 VDGKFDLIV------ANI-LA--EILLDLI--PQLDSHLNEDGQVI 156

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
           +  D+G G G   + L+ + G + +TG+D  +D +  A             F   D+   
Sbjct: 36  NGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPN-----TNFGKADLATW 90

Query: 226 KLERQFQLV 234
           K  ++  L+
Sbjct: 91  KPAQKADLL 99

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 27/141 (19%)

Query: 145 LNHVEDLKSEPVEENDKYLS---SWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDA 199
           L+    L+    E+  K        +VLD+GTG G  L  LSK       +  +D  E+ 
Sbjct: 15  LDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM 74

Query: 200 INLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI----GLH----PDGPL 251
           +N A    N+ G   ++ L  +     L           T+D I      H    P   L
Sbjct: 75  VNYAWEKVNKLGLKNVEVLKSEENKIPLP--------DNTVDFIFMAFTFHELSEPLKFL 126

Query: 252 KRIMYWDSVSKLVAPGGLLVI 272
           + +       ++  P   L I
Sbjct: 127 EELK------RVAKPFAYLAI 141

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 31/158 (19%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            ++D G GNG   + L +   + L  +D +  A+        ++ F  +  L D      
Sbjct: 20  VIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEV-----KEKFDSVITLSDP----- 68

Query: 227 LERQFQLVMDKGTLDAI----GLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 278
                   +   ++D I      H        +  +       +++   G ++I      
Sbjct: 69  ------KEIPDNSVDFILFANSFHDMDDKQHVISEV------KRILKDDGRVIIIDWRKE 116

Query: 279 KDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYL 316
              +   +S     +  +        E+     P+ + 
Sbjct: 117 NTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYHFG 154

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 16/106 (15%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VL+ G G+G        Q        D+S + + LA++ A                + K
Sbjct: 51  RVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPHADV--------YEWNGK 101

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
            E              I +   GP         + +L AP    + 
Sbjct: 102 GELPAG---LGAPFGLI-VSRRGPTS---VILRLPELAAPDAHFLY 140

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ------SLANRDGFSCIKFLVDD 221
           ++D+ +GNG++   LS +  + + GV+  E   ++A+       L ++     I++ +  
Sbjct: 53  IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQ--IEIIEYDLKK 110

Query: 222 VLDTKLERQFQLVM 235
           + D   + +  +V 
Sbjct: 111 ITDLIPKERADIVT 124

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 25/135 (18%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-----------------R 209
            V     G  + ++  + +G   + GV+ SE  I    +  N                 +
Sbjct: 71  RVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFK 129

Query: 210 DGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG 267
                I      + D       +F  + D+G L AI      P     Y D +  L+   
Sbjct: 130 SSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAI-----NPGDHDRYADIILSLLRKE 184

Query: 268 GLLVITSCNSTKDEL 282
              ++   +    + 
Sbjct: 185 FQYLVAVLSYDPTKH 199

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 22/52 (42%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 214
           +   SV+D GTGNG+L       G   +T  D   DAI  A+       F  
Sbjct: 50  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 101

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 19/117 (16%)

Query: 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 222
           +   VLD+G G G+L    ++      LT  D S  A+  +++    +G    +    +V
Sbjct: 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG-EVFASNV 254

Query: 223 LDTKLERQFQLVM-------DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
              +++ +F +++          T             + +   +V  L   GG L I
Sbjct: 255 FS-EVKGRFDMIISNPPFHDGMQTSLDAA--------QTLIRGAVRHL-NSGGELRI 301

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 12/101 (11%), Positives = 37/101 (36%), Gaps = 23/101 (22%)

Query: 191 TGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLD-----TKLERQFQLV-MD------ 236
           T VD ++ +  L+ +    +       + +V DV D      +    + ++ +D      
Sbjct: 239 TSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFAR 298

Query: 237 --KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275
             K        +      +++      ++++  GL++ ++ 
Sbjct: 299 NKKEVFSVSKDY-----HKLIRQ--GLEILSENGLIIASTN 332

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 19/96 (19%)

Query: 191 TGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KLERQFQLV-MD--------KGT 239
             VD   +A+ +    A R G   +     + L T   LE  F  V +D        +  
Sbjct: 240 LAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEEL 298

Query: 240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275
                   D  ++  +      +L+A  G L ++SC
Sbjct: 299 PAMKRHLVDL-VREAL------RLLAEEGFLWLSSC 327

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 23/149 (15%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
             VLD+ TG G +    +      +   D +ED + +A++    +G   ++++  D    
Sbjct: 39  EEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ- 96

Query: 226 KLERQFQLVMDKGTLDAI----GLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277
                  +         +      H    P   +          +++  GG L++   ++
Sbjct: 97  -------MPFTDERFHIVTCRIAAHHFPNPASFVS------EAYRVLKKGGQLLLVDNSA 143

Query: 278 TKDELVHEVSNLSQRRIGVSQEHEIKDEE 306
            +++      N  ++    S     K  +
Sbjct: 144 PENDAFDVFYNYVEKERDYSHHRAWKKSD 172

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 167 SVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 221
             L+IGTG+     L+ ++        +T  +  E+    A+    R+  +  +      
Sbjct: 58  VALEIGTGHTAMMALMAEKFFN---CKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114

Query: 222 VLDTKLERQFQLV 234
           ++   +E  F ++
Sbjct: 115 IIKGVVEGTFDVI 127

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 29/149 (19%)

Query: 191 TGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLD-----TKLERQFQLV-MD------ 236
           T VD S+ AI  A+      G   + I+++ +D +       +    + ++  D      
Sbjct: 179 THVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGR 238

Query: 237 --KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK------DELVHEVSN 288
              G +  +  H    L  ++  D   ++++P  L ++ +  S +       EL+ E   
Sbjct: 239 GTHGEVWQLFDH----LPLML--DICREILSPKALGLVLTAYSIRASFYSMHELMRETMR 292

Query: 289 LSQRRIGVSQEHEIKDEEACREPPFRYLN 317
            +   +  S E  I++     + P R L+
Sbjct: 293 GAGGVVA-SGELVIREAGLDGKTPGRVLS 320

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLV 219
              +V DIGTG+G   + + + S    + +   D S  A+ +A+  A R G S       
Sbjct: 123 GIKTVADIGTGSGAIGVSVAKFSD---AIVFATDVSSKAVEIARKNAERHGVSDRFFVRK 179

Query: 220 DDVLD 224
            + L+
Sbjct: 180 GEFLE 184

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 27/118 (22%)

Query: 167 SVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVD 220
             + I    GL    +L  L+      LT +D   +    A++L    G+  S ++FL+ 
Sbjct: 59  GAIAITPAAGLVGLYILNGLADNTT--LTCIDPESEHQRQAKALFREAGYSPSRVRFLLS 116

Query: 221 ---DVLDTKLERQFQLVM---DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
              DV+       +QLV        L A               D+   L+  GG LV+
Sbjct: 117 RPLDVMSRLANDSYQLVFGQVSPMDLKA-------------LVDAAWPLLRRGGALVL 161

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 23/133 (17%)

Query: 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFL 218
           +Y+ +  VL+  +  G         G S +  VD S++A+++A+     +       +F+
Sbjct: 217 RYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV 276

Query: 219 VDDVLDT-----KLERQFQLV-MD--------KGTLDAIGLHPDGPLKRIMYWDSVSKLV 264
            DDV            +F ++ MD           + A   +     K I       +L+
Sbjct: 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGY-----KDINM--LAIQLL 329

Query: 265 APGGLLVITSCNS 277
             GG+L+  SC+ 
Sbjct: 330 NEGGILLTFSCSG 342

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 20/130 (15%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------------RDGFSC 214
            VL    G    +  LS QG+  + G + SE A+    +                     
Sbjct: 25  RVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 83

Query: 215 IKFLVDDVLDT--KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
           I+    D      +         D+  + A+         R  Y   +  L+      ++
Sbjct: 84  IEIWCGDFFALTARDIGHCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLL 138

Query: 273 TSCNSTKDEL 282
            +    +  L
Sbjct: 139 ITLEYDQALL 148

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 20/119 (16%)

Query: 165 SWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQ---SLANRDGFSCIKFLVD 220
              ++D+G GNG++   L      + +  VD S  A+  ++        +     +F+++
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN 282

Query: 221 DVLDTKLERQFQLVM-------DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
           + L      +F  V+            D +           M+  +   L    G L I
Sbjct: 283 NALSGVEPFRFNAVLCNPPFHQQHALTDNVAWE--------MFHHARRCL-KINGELYI 332

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 184 KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 243
             GF ++  VD S +A+  A+  A  +G   ++ L  +  D  L    +L  +    D +
Sbjct: 228 ALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL-LR---RLEKEGERFDLV 283

Query: 244 GLHP------DGPLKRIM--YWD---SVSKLVAPGGLLVITSCNS 277
            L P         ++R    Y +      KL+  GG+L   SC+ 
Sbjct: 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 27/135 (20%)

Query: 149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
             +    ++E+D+      +LDIG G+G +  EL+ +G+  +TG+D + +AI LA++ A 
Sbjct: 21  YPIIHNYLQEDDE------ILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAAR 73

Query: 209 RDGFS-----CIKFLVDDVLDTKLERQFQLVMDKGTLDAI----GLH--PDGPLKRIMYW 257
             G +       +F V++           L     + D       L   PD P +R    
Sbjct: 74  SPGLNQKTGGKAEFKVENASS--------LSFHDSSFDFAVMQAFLTSVPD-PKERSRII 124

Query: 258 DSVSKLVAPGGLLVI 272
             V +++ PG  L +
Sbjct: 125 KEVFRVLKPGAYLYL 139

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 164 SSWSVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV 219
           S   V+D+GTG+G     +           +T VD S DA+ +A+  A R G   + +  
Sbjct: 30  SGTRVIDVGTGSGCIAVSIALACPG---VSVTAVDLSMDALAVARRNAERFGAV-VDWAA 85

Query: 220 DDVLD-----TKLERQFQLV 234
            D ++      +  R +  +
Sbjct: 86  ADGIEWLIERAERGRPWHAI 105

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 24/115 (20%)

Query: 167 SVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 221
            V+  G G G       + +S      +  +D   D +  A+ + + +G    ++  V D
Sbjct: 59  LVVVPGDGLGCASWWFARAISISS--RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGD 116

Query: 222 VLDT-KLERQFQLVM---DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 272
            L     +R   ++    D                     + +++ +A   LL+ 
Sbjct: 117 PLGIAAGQRDIDILFMDCDVFNGAD-------------VLERMNRCLAKNALLIA 158

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 19/111 (17%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           + DIG G G     L+ QG   +  V+ S      A           +++      +  L
Sbjct: 38  IADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHPQ------VEWFTGYAENLAL 90

Query: 228 E-RQFQLVMDKGTLDAIGLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSC 275
             +    V+       + +H       K       + +    G ++++T  
Sbjct: 91  PDKSVDGVI-----SILAIHHFSH-LEKSFQEMQRIIR---DGTIVLLTFD 132

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            VLD+G   G L   ++ + G S + G+D     I+ A+          ++     +   
Sbjct: 49  DVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGD 108

Query: 226 KLERQFQLVMDKGTLD 241
                 +         
Sbjct: 109 PGAEGEEGTTTVRKRS 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.85
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.76
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.76
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.76
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.75
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.74
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.71
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.71
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.71
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.71
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.71
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.71
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.71
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.7
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.7
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.7
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.7
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.7
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.69
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.69
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.69
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.69
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.69
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.69
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.68
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.68
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.68
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.68
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.68
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.68
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.67
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.67
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.67
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.67
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.67
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.66
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.66
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.66
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.66
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.66
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.66
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.65
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.65
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.65
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.65
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.65
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.65
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.65
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.65
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.65
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.65
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.64
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.64
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.64
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.64
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.64
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.64
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.64
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.64
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.64
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.63
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.63
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.63
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.63
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.63
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.62
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.62
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.62
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.62
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.62
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.62
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.62
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.62
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.61
3ocj_A	305	Putative exported protein; structural genomics, PS	99.61
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.61
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.61
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.61
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.61
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.6
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.6
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.6
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.6
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.6
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.59
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.59
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.59
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.59
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.59
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.58
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.58
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.58
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.58
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.58
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.57
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.57
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.57
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.57
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.57
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.57
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.56
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.56
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.56
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.56
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.55
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.55
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.55
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.55
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.55
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.55
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.54
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.54
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.54
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.54
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.54
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.54
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.54
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.54
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.53
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.53
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.53
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.53
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.53
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.52
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.52
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.52
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.51
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.51
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.51
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.51
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.51
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.51
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.51
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.5
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.5
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.5
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.5
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.5
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.49
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.49
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.49
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.49
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.49
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.49
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.49
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.48
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.48
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.48
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.48
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.48
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.48
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.48
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.48
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.47
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.47
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.47
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.47
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.47
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.47
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.47
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.47
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.47
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.46
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.46
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.46
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.46
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.46
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.46
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.45
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.45
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.45
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.45
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.45
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.45
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.44
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.44
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.44
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.44
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.43
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.43
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.43
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.43
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.43
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.42
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.42
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.42
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.42
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.42
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.41
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.41
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.41
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.41
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.41
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.41
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.41
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.4
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.4
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.4
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.4
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.4
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.39
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.39
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.39
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.39
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.39
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.39
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.39
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.39
2o07_A	304	Spermidine synthase; structural genomics, structur	99.38
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.37
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.37
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.37
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.36
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.36
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.36
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.36
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.35
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.35
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.35
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.34
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.33
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.33
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.33
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.32
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.32
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.31
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.31
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.31
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.31
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.31
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.31
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.3
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.29
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.29
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.29
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.28
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.28
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.28
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.28
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.28
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.28
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.27
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.26
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.25
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.25
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.24
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.24
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.24
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.22
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.22
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.22
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.21
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.19
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.15
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.15
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.15
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.14
3lkd_A	542	Type I restriction-modification system methyltrans	99.13
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.11
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.07
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.03
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.02
3khk_A	544	Type I restriction-modification system methylation	99.01
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.0
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.97
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.94
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.93
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.92
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.92
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.86
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.85
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.84
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.83
3ufb_A	530	Type I restriction-modification system methyltran	98.82
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.82
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.8
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.78
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.73
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.7
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.64
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.62
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.58
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.54
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.52
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.49
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.41
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.36
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.24
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.23
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.22
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.18
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.16
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.11
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.09
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.05
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.95
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.89
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.82
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.53
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.46
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.43
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.39
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.28
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.19
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.05
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.05
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.01
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.78
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.68
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.47
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.07
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.98
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.92
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.83
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.82
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.52
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.51
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.49
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.4
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.37
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.32
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.22
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.2
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.2
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.18
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	95.17
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.03
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.03
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	94.86
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.81
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.77
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.75
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.5
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.44
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.26
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.23
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.17
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.02
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.95
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.88
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	93.86
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.86
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.75
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.69
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.68
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.66
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.65
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.6
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.59
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.58
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.57
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.57
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.49
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.46
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.38
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.37
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.37
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.27
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.22
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.22
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	93.12
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	93.12
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.07
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.05
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	92.95
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	92.89
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.78
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	92.76
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.67
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.63
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	92.61
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.49
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.46
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.43
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	92.37
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.33
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	92.21
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.2
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.13
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	92.11
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	92.05
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	92.03
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.03
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.02
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	92.01
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.98
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.96
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.95
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	91.9
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	91.9
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.87
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.83
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	91.74
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	91.61
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	91.56
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	91.54
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	91.52
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	91.41
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	91.32
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	91.25
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	91.24
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	91.13
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	90.99
2zig_A	297	TTHA0409, putative modification methylase; methylt	90.9
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.7
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	90.68
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.66
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	90.55
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	90.52
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	90.47
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.27
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.97
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	89.84
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	89.76
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	89.7
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	89.61
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	89.4
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	89.34
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	89.1
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	88.77
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	88.67
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	88.42
4dqx_A	277	Probable oxidoreductase protein; structural genomi	88.37
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	88.31
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	88.27
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.19
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	88.14
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.13
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	87.85
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	87.81
1id1_A	153	Putative potassium channel protein; RCK domain, E.	87.74
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	87.69
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	87.57
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	87.54
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	87.41
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	87.34
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	87.17
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	87.11
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	86.98
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.84
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	86.84
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	86.76
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.71
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	86.61
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	86.57
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	86.48
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	86.46
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	86.41
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	86.4
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	86.26
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	86.23
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	85.89
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	85.89
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	85.76
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	85.63
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	85.61
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	85.35
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	85.35
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	85.33
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	85.12
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	85.06
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	84.94
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	84.82
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	84.78
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	84.61
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	84.58
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	84.51
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	84.4
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	84.31
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	84.21
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	84.16
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	84.0
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	83.9
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	83.87
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	83.82
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	83.3
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	83.09
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	82.98
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	82.86
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	82.66
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	82.63
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	82.61
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	82.52
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	82.49
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	82.23
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	82.1
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	82.08
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	82.04
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	81.96
3imf_A	257	Short chain dehydrogenase; structural genomics, in	81.69
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	81.56
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	81.51
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	81.34
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	81.25
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	81.11
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	80.83
3rih_A	293	Short chain dehydrogenase or reductase; structural	80.68
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	80.3
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	80.3
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	80.19

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.85  E-value=2.7e-20  Score=167.30  Aligned_cols=153  Identities=18%  Similarity=0.220  Sum_probs=113.3

Q ss_pred             CCCCCCCCCcCCcHHhHHHHHHHHHHhhhhcCCcceEEeCCchhHHHHHHHhhhhhccccCcccCccccccccchhhhhc
Q 019324           82 EPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDK  161 (343)
Q Consensus        82 ~~~~~~~~~~~~~~~~Wd~~y~~~~~~f~~~~~~~~~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~  161 (343)
                      -.+.++.++.+..++||+.+|......|.          .......+..|.....                        .
T Consensus        20 ~~~~e~~~~~~~~~~~Wd~~y~~~~~~~~----------~~~~~~~l~~~~~~~~------------------------~   65 (252)
T 2gb4_A           20 HPDAEVQKNQVLTLEDWKEKWVTRHISFH----------QEQGHQLLKKHLDTFL------------------------K   65 (252)
T ss_dssp             --CTTTTTTCCCCHHHHHHHHHHTCCTTC----------CTTCCHHHHHHHHHHH------------------------T
T ss_pred             CCCccccccccCCHHHHHHHHhcCCCCcc----------cCCCCHHHHHHHHHhc------------------------c
Confidence            33455778888899999999986533221          1111222333332221                        1


Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-----------------cCCCceEEEEccCCC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-----------------DGFSCIKFLVDDVLD  224 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-----------------~~~~~i~~~~~D~~~  224 (343)
                      ..++.+|||+|||+|..+..|++.|+ +|+|+|+|+.||+.|+++...                 ....+++++++|+.+
T Consensus        66 ~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           66 GQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            13578999999999999999999987 899999999999999876531                 012489999999999


Q ss_pred             CccC--CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          225 TKLE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       225 ~~~~--~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ++..  ++||+|++.+++.++.     ......+++++.++|||||++++.+
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~-----~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAIN-----PGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSC-----GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCC-----HHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            8763  7999999999988873     2456678999999999999997654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.76  E-value=1.9e-18  Score=150.18  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=89.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc------------CCCceEEEEccCCCCccC--
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------------GFSCIKFLVDDVLDTKLE--  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~------------~~~~i~~~~~D~~~~~~~--  228 (343)
                      .++.+|||+|||+|..+..|++.|+ +|+|+|+|+.|++.|+++....            ...+++++++|+.+.++.  
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            4578999999999999999999987 8999999999999999876431            124899999999998753  


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++||+|++..+++++.     ......++++++++|||||++++.+.
T Consensus       100 ~~fD~v~~~~~l~~l~-----~~~~~~~l~~~~r~LkpgG~~~l~~~  141 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALP-----ADMRERYVQHLEALMPQACSGLLITL  141 (203)
T ss_dssp             HSEEEEEEESCGGGSC-----HHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             CCEEEEEECcchhhCC-----HHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            7899999999888772     34566789999999999998555443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.76  E-value=3.9e-18  Score=153.94  Aligned_cols=110  Identities=19%  Similarity=0.231  Sum_probs=94.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC---CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG---FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g---~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      .++.+|||||||+|.++..|++..   ..+|+|+|+|+.|++.|++++...+. .+++++++|+.+.+. +.||+|+++.
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~~  147 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLNF  147 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEES
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceeee
Confidence            678899999999999999999861   12899999999999999999987765 379999999998865 4699999999


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +++++.     +.+...++++++++|||||+|++......
T Consensus       148 ~l~~~~-----~~~~~~~l~~i~~~LkpGG~lii~e~~~~  182 (261)
T 4gek_A          148 TLQFLE-----PSERQALLDKIYQGLNPGGALVLSEKFSF  182 (261)
T ss_dssp             CGGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             eeeecC-----chhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence            998873     35566789999999999999999765544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.76  E-value=7.6e-18  Score=149.18  Aligned_cols=108  Identities=23%  Similarity=0.254  Sum_probs=93.1

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....+. .+++++++|+.+...+++||+|++..++++
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            456999999999999999988765 899999999999999999876432 479999999999877789999999999887


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +.     +.+...+++++.++|||||++++.....
T Consensus       145 ~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          145 IE-----PEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             SC-----GGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CC-----HHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            72     3467788999999999999999876543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.75  E-value=4.4e-18  Score=147.87  Aligned_cols=114  Identities=27%  Similarity=0.396  Sum_probs=95.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++...  .+++.++++|+.+.+. +++||+|+++.+++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTLD  118 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence            45789999999999999999998766899999999999999998764  2489999999998765 57899999999988


Q ss_pred             ccccCC--------CChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHP--------DGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~--------~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++....        ........+++++.++|||||++++.+++..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A          119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence            773111        0124567899999999999999999888763

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.74  E-value=1.2e-18  Score=157.46  Aligned_cols=110  Identities=19%  Similarity=0.180  Sum_probs=88.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-----------------------------C
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-----------------------------S  213 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-----------------------------~  213 (343)
                      .++.+|||||||+|.++..++..|+.+|+|+|+|+.|++.|++++.....                             .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            45789999999999988888877776899999999999999987654310                             1


Q ss_pred             ceE-EEEccCCCCcc-----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          214 CIK-FLVDDVLDTKL-----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       214 ~i~-~~~~D~~~~~~-----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++. ++++|+.+..+     .++||+|+++.+++++.   ....+...++++++++|||||+|+++..
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~---~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC---CSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhc---CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            244 89999988421     46899999999999873   1235667889999999999999999864

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.71  E-value=1.4e-16  Score=141.82  Aligned_cols=113  Identities=18%  Similarity=0.155  Sum_probs=93.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC------CCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE------RQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~------~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++..   ..+++++++|+.+....      ..||+|++
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~  130 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQIHSEIGDANIYM  130 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccccccccCccEEEE
Confidence            5678999999999999999999976 89999999999999999872   24899999999986432      24999999


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                      +.+++++.     ..+...+++++.++|||||++++............
T Consensus       131 ~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~  173 (245)
T 3ggd_A          131 RTGFHHIP-----VEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFN  173 (245)
T ss_dssp             ESSSTTSC-----GGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHH
T ss_pred             cchhhcCC-----HHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHH
Confidence            99888772     34667899999999999999998877766544433

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.71  E-value=2.5e-17  Score=146.24  Aligned_cols=105  Identities=23%  Similarity=0.332  Sum_probs=92.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++...    +++++++|+.+...+++||+|++..+++|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  115 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQLPRRYDNIVLTHVLEH  115 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCcCCcccEEEEhhHHHh
Confidence            4577999999999999999999876 899999999999999987642    79999999988766789999999999999


Q ss_pred             cccCCCChhhHHHHHHHHh-hccCCCcEEEEEecCCCh
Q 019324          243 IGLHPDGPLKRIMYWDSVS-KLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~-~~LkpgG~lii~~~~~~~  279 (343)
                      +       .+...+++++. ++|||||++++..++...
T Consensus       116 ~-------~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~  146 (250)
T 2p7i_A          116 I-------DDPVALLKRINDDWLAEGGRLFLVCPNANA  146 (250)
T ss_dssp             C-------SSHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred             h-------cCHHHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence            8       34568899999 999999999999887654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.71  E-value=2e-16  Score=135.73  Aligned_cols=107  Identities=19%  Similarity=0.300  Sum_probs=94.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++....+.+++++.++|+.+.+.+++||+|++..++++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~  109 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMF  109 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGGG
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhhh
Confidence            4567999999999999999999875 899999999999999999988887789999999998766789999999999987


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +.     ..+...+++++.++|||||++++...
T Consensus       110 ~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A          110 LE-----AKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             SC-----GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CC-----HHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            72     24667889999999999999887543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.71  E-value=1.8e-17  Score=151.98  Aligned_cols=114  Identities=18%  Similarity=0.256  Sum_probs=90.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-----------------------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-----------------------------  212 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-----------------------------  212 (343)
                      .++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.|++++...+.                             
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            46789999999999999999987 445999999999999999998665431                             


Q ss_pred             -----------------------------CceEEEEccCCCCc------cCCCccEEEECccccccccCCCChhhHHHHH
Q 019324          213 -----------------------------SCIKFLVDDVLDTK------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYW  257 (343)
Q Consensus       213 -----------------------------~~i~~~~~D~~~~~------~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l  257 (343)
                                                   .+++|.++|+....      ..++||+|+|..++.++.+. ........++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~-~~~~~~~~~l  203 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLN-WGDEGLKRMF  203 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHH-HHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhc-CCHHHHHHHH
Confidence                                         27999999998764      36799999999999777211 0124677899


Q ss_pred             HHHhhccCCCcEEEEEecCC
Q 019324          258 DSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       258 ~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++++++|||||+|++...++
T Consensus       204 ~~~~~~LkpGG~lil~~~~~  223 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEPQPW  223 (292)
T ss_dssp             HHHHHHEEEEEEEEEECCCH
T ss_pred             HHHHHHhCCCcEEEEecCCc
Confidence            99999999999999976544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.71  E-value=2e-17  Score=146.69  Aligned_cols=106  Identities=23%  Similarity=0.353  Sum_probs=92.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++..   ..+++++++|+.+.+. +++||+|++..+++
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  127 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSLPFENEQFEAIMAINSLE  127 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence            5678999999999999999999976 89999999999999998752   2489999999998875 68999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      ++       .+...+++++.++|+|||++++..++...
T Consensus       128 ~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  158 (242)
T 3l8d_A          128 WT-------EEPLRALNEIKRVLKSDGYACIAILGPTA  158 (242)
T ss_dssp             SS-------SCHHHHHHHHHHHEEEEEEEEEEEECTTC
T ss_pred             hc-------cCHHHHHHHHHHHhCCCeEEEEEEcCCcc
Confidence            87       35567899999999999999998766543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.71  E-value=3.5e-17  Score=146.56  Aligned_cols=107  Identities=19%  Similarity=0.255  Sum_probs=93.8

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      ..++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.+++++...+++ +++++++|+.+.+. +++||+|++..+
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  123 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA  123 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence            3567899999999999999999985459999999999999999999988875 49999999988765 589999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++++        +...+++++.++|||||++++..++
T Consensus       124 l~~~--------~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          124 IYNI--------GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             SCCC--------CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             Hhhc--------CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            8876        2456889999999999999998654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.71  E-value=7.3e-17  Score=145.01  Aligned_cols=106  Identities=16%  Similarity=0.325  Sum_probs=93.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...+.+++.+.++|+.+.++ +++||+|+++.+++
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            5678999999999999999999865 999999999999999999988887789999999998775 57999999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++       .+...+++++.++|||||++++..+.
T Consensus       115 ~~-------~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          115 HF-------PNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             GC-------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hc-------CCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            88       35567899999999999999996543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.70  E-value=4.1e-17  Score=139.70  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=94.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.+++++..+++++++++++|+.+...   +++||+|+++.+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            46789999999999999988888776899999999999999999999887789999999987642   579999999887


Q ss_pred             ccccccCCCChhhHHHHHHHHhh--ccCCCcEEEEEecCCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSK--LVAPGGLLVITSCNST  278 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~--~LkpgG~lii~~~~~~  278 (343)
                      +++.      ......+++.+.+  +|+|||++++......
T Consensus       123 ~~~~------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          123 YNVD------SADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             TTSC------HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             CCcc------hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            6543      2466778899988  9999999999876543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.70  E-value=4.8e-17  Score=146.41  Aligned_cols=101  Identities=19%  Similarity=0.260  Sum_probs=86.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      ..+.+|||||||+|.++..|++.+. +|+|+|+|+.|++.|+++      +++.++++|+.++++ +++||+|++..+++
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h  110 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH------PRVTYAVAPAEDTGLPPASVDVAIAAQAMH  110 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC------TTEEEEECCTTCCCCCSSCEEEEEECSCCT
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc------CCceeehhhhhhhcccCCcccEEEEeeehh
Confidence            3457999999999999999999975 899999999999887642      589999999999876 68999999999887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++        +...+++++.|+|||||+|++..+...
T Consensus       111 ~~--------~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          111 WF--------DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             TC--------CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             Hh--------hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            66        234688999999999999998766543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.70  E-value=4e-17  Score=146.12  Aligned_cols=107  Identities=20%  Similarity=0.205  Sum_probs=93.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.+++++...++. ++++.++|+.+.+++++||+|++..+++
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~~~  114 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATW  114 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCChH
Confidence            567899999999999999999872238999999999999999999888874 7999999999876678999999999988


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++       .+...+++++.++|||||++++..+.
T Consensus       115 ~~-------~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          115 IA-------GGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             GT-------SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             hc-------CCHHHHHHHHHHHcCCCeEEEEecCc
Confidence            77       24467889999999999999997643

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.70  E-value=6e-17  Score=141.31  Aligned_cols=108  Identities=25%  Similarity=0.290  Sum_probs=94.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+  +++++++|+.+...+++||+|+++.++++
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            4567999999999999999999875 89999999999999999887643  89999999999877789999999999988


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +    ..+.....+++++.++|||||++++.++..
T Consensus       127 ~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          127 L----EDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             S----SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             C----CCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            8    233455678999999999999999976543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.70  E-value=1.9e-16  Score=141.62  Aligned_cols=104  Identities=17%  Similarity=0.229  Sum_probs=92.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++..   ..++.++++|+.+.+. +++||+|++..+++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  119 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAYNVVLSSLALH  119 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCeEEEEEchhhh
Confidence            4678999999999999999999976689999999999999999875   2489999999988765 58999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++       .+...+++++.++|||||++++..++
T Consensus       120 ~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          120 YI-------ASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             GC-------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hh-------hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            88       45678899999999999999997543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.69  E-value=1.5e-16  Score=143.65  Aligned_cols=107  Identities=21%  Similarity=0.329  Sum_probs=94.6

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      ..++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.+++++...+++ +++++++|+.+.+. +++||+|++..+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~  123 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA  123 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence            3568899999999999999999986559999999999999999999988874 69999999998764 578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++++        +...+++++.++|||||++++..+.
T Consensus       124 ~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          124 IYNI--------GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             GGGT--------CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             ceec--------CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            9877        2356889999999999999997654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.69  E-value=4.1e-16  Score=139.24  Aligned_cols=107  Identities=23%  Similarity=0.405  Sum_probs=91.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc-cc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT-LD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~-l~  241 (343)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++....+. ++.++++|+.+.+.+++||+|++... +.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  117 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccCCCccEEEEcCCchh
Confidence            4567999999999999999999876 899999999999999999988775 79999999998777788999998643 33


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++     ...+...+++++.++|||||.+++..++
T Consensus       118 ~~-----~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          118 YF-----DEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cC-----CHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            32     2356778999999999999999987665

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.69  E-value=1.7e-16  Score=141.03  Aligned_cols=108  Identities=18%  Similarity=0.282  Sum_probs=95.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+.+++.+.++|+...++ +++||+|++..+++
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~   98 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH   98 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchh
Confidence            6788999999999999999999865 899999999999999999988887789999999988765 57899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++       .+...+++++.++|||||++++......
T Consensus        99 ~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~  128 (239)
T 1xxl_A           99 HF-------SDVRKAVREVARVLKQDGRFLLVDHYAP  128 (239)
T ss_dssp             GC-------SCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             hc-------cCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence            87       3456789999999999999999765543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.69  E-value=1.9e-16  Score=145.05  Aligned_cols=106  Identities=14%  Similarity=0.280  Sum_probs=94.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++....++ ++++++++|+.+.++ +++||+|++..+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  159 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA  159 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence            56789999999999999999987 65 899999999999999999988776 479999999998775 578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++++.       +...+++++.++|||||++++..+.
T Consensus       160 l~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          160 FLHSP-------DKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             GGGCS-------CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhhcC-------CHHHHHHHHHHHcCCCeEEEEEEec
Confidence            99882       3668899999999999999997653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.69  E-value=1.5e-16  Score=139.99  Aligned_cols=111  Identities=25%  Similarity=0.482  Sum_probs=95.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-----ceEEEEccCCCCcc-CCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKL-ERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-----~i~~~~~D~~~~~~-~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....++.     ++.+.++|+...+. +++||+|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            5678999999999999999999975 8999999999999999998876652     58999999998765 678999999


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ..+++++    ..+.....+++++.++|||||++++..+...
T Consensus       108 ~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (235)
T 3sm3_A          108 QAFLTSV----PDPKERSRIIKEVFRVLKPGAYLYLVEFGQN  145 (235)
T ss_dssp             ESCGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             cchhhcC----CCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence            9998887    3344455899999999999999999876553

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.69  E-value=1.7e-16  Score=140.10  Aligned_cols=111  Identities=17%  Similarity=0.277  Sum_probs=94.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.+++++...+  +++++++|+.+.+..++||+|++..+++
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~l~  120 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFEEKYDMVVSALSIH  120 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCCSCEEEEEEESCGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCCCCceEEEEeCccc
Confidence            567899999999999999999883 3489999999999999999886554  8999999999987778999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  280 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~  280 (343)
                      ++.     ......+++++.++|||||++++..+.....
T Consensus       121 ~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  154 (234)
T 3dtn_A          121 HLE-----DEDKKELYKRSYSILKESGIFINADLVHGET  154 (234)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred             cCC-----HHHHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence            872     2344468999999999999999987665443

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.68  E-value=1.2e-16  Score=142.03  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=92.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++....+..++.++++|+.+.+. +++||+|++..+++
T Consensus        78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            35789999999999999999988655899999999999999999876643479999999988765 45899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++.     ......+++++.++|||||++++..+.
T Consensus       158 ~~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          158 HLT-----DQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hCC-----HHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            873     233568899999999999999996653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.68  E-value=1.7e-16  Score=138.19  Aligned_cols=111  Identities=25%  Similarity=0.359  Sum_probs=93.7

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++    .+.++++++++|+.+...+++||+|++..+++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLA  118 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCCSSCEEEEEEESCGG
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCCCCceeEEEEechhh
Confidence            35677999999999999999999865 89999999999999998    44468999999999885578999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  282 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  282 (343)
                      ++.     ......+++++.++|||||.+++..++.....+
T Consensus       119 ~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~  154 (218)
T 3ou2_A          119 HVP-----DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRL  154 (218)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEECCCC---
T ss_pred             cCC-----HHHHHHHHHHHHHHcCCCeEEEEEeCCCCcccc
Confidence            883     233578899999999999999998887754433

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.68  E-value=1.4e-16  Score=145.25  Aligned_cols=108  Identities=22%  Similarity=0.358  Sum_probs=95.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEECccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDKGTL  240 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~~~l  240 (343)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...++ ++++++++|+.+.+  .+++||+|++..++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            367999999999999999999965 899999999999999999988887 58999999999886  46899999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      +++       .+...+++++.++|||||++++..++...
T Consensus       147 ~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  178 (285)
T 4htf_A          147 EWV-------ADPRSVLQTLWSVLRPGGVLSLMFYNAHG  178 (285)
T ss_dssp             GGC-------SCHHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred             hcc-------cCHHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence            988       34567899999999999999998876543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.68  E-value=2.8e-16  Score=133.75  Aligned_cols=114  Identities=15%  Similarity=0.119  Sum_probs=88.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECc-c
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG-T  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~-~  239 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++++...+++++++++.|.....  .+++||+|+++. .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~   99 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY   99 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence            567899999999999999999984 499999999999999999999888778999998877642  367899998862 2


Q ss_pred             ccccc-cCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~-~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +..-. ...........+++++.++|||||++++..+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A          100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence            21100 000123555678899999999999999977654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.68  E-value=3.2e-16  Score=143.13  Aligned_cols=112  Identities=21%  Similarity=0.274  Sum_probs=95.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc--CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL--ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~--~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|+++....+. .++.++++|+.+.+.  +++||+|++..+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            46789999999999999999888766899999999999999999987765 479999999998764  578999999988


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++++.   ....+...+++++.++|||||++++..++.
T Consensus       143 l~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          143 FHYAF---STSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             hhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            87632   223567789999999999999999988764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.68  E-value=3.5e-16  Score=140.74  Aligned_cols=103  Identities=21%  Similarity=0.295  Sum_probs=90.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECc-ccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~-~l~  241 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++.     +++.++++|+.+.+.+++||+|++.. +++
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~  122 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRN-----PDAVLHHGDMRDFSLGRRFSAVTCMFSSIG  122 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTCCCSCCEEEEEECTTGGG
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC-----CCCEEEECChHHCCccCCcCEEEEcCchhh
Confidence            3468999999999999999999875 8999999999999999875     37899999999987788999999997 888


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++    ....+...+++++.++|||||++++...
T Consensus       123 ~~----~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          123 HL----AGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             GS----CHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             hc----CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            87    2235677889999999999999999744

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.67  E-value=2e-16  Score=144.31  Aligned_cols=106  Identities=20%  Similarity=0.225  Sum_probs=94.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++. + ..+|+|+|+|+.+++.+++++...+. +++++++|+.+.+.+++||+|++..++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~~l   99 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHAFL   99 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcCCCeeEEEECChh
Confidence            56889999999999999999987 2 24899999999999999999887764 899999999998777899999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++       .+...+++++.++|||||++++..++
T Consensus       100 ~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          100 LHM-------TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             GGC-------SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcC-------CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            888       34568899999999999999998877

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.67  E-value=3.6e-16  Score=142.51  Aligned_cols=106  Identities=19%  Similarity=0.313  Sum_probs=94.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++...++ +++++++|+.+...+++||+|+++.++++
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~i~~~~~~~~  196 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANIQENYDFIVSTVVFMF  196 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCCCSCEEEEEECSSGGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccccCCccEEEEccchhh
Confidence            4688999999999999999999976 899999999999999999999887 99999999998777889999999999987


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +.     ......+++++.++|||||++++...
T Consensus       197 ~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          197 LN-----RERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             SC-----GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CC-----HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            73     34566889999999999999887544

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.67  E-value=6.7e-16  Score=134.26  Aligned_cols=107  Identities=20%  Similarity=0.294  Sum_probs=93.6

Q ss_pred             CeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECcccccc
Q 019324          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGTLDAI  243 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~i  243 (343)
                      .+|||+|||+|.++..+++.+..+|+|+|+|+.+++.+++++...+.. +++++++|+.+.+. +++||+|+++.+++++
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc
Confidence            399999999999999999873238999999999999999999988864 79999999998765 5789999999999887


Q ss_pred             ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          244 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       244 ~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                             .+...+++++.++|||||++++.......
T Consensus       125 -------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  153 (219)
T 3dlc_A          125 -------EDVATAFREIYRILKSGGKTYIGGGFGNK  153 (219)
T ss_dssp             -------SCHHHHHHHHHHHEEEEEEEEEEECCSSH
T ss_pred             -------cCHHHHHHHHHHhCCCCCEEEEEeccCcH
Confidence                   45667899999999999999998765544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.67  E-value=9e-16  Score=141.08  Aligned_cols=114  Identities=11%  Similarity=0.222  Sum_probs=98.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++. | .+|+|+|+|+.+++.++++....+++ ++++.++|+.+.  +++||+|+++.++
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~v~~~~~~  147 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAF  147 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCG
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccEEEEcchH
Confidence            56789999999999999999998 7 48999999999999999999988875 799999999876  7899999999999


Q ss_pred             cccccCCC---ChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324          241 DAIGLHPD---GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  280 (343)
Q Consensus       241 ~~i~~~~~---~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~  280 (343)
                      +++. ++.   +......+++++.++|||||++++..+.....
T Consensus       148 ~~~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  189 (302)
T 3hem_A          148 EHFA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDK  189 (302)
T ss_dssp             GGTT-CCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCH
T ss_pred             HhcC-ccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCc
Confidence            8883 111   33566789999999999999999987665443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.67  E-value=4.1e-16  Score=136.27  Aligned_cols=108  Identities=18%  Similarity=0.218  Sum_probs=92.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++..    .+++++++|+.+.+..++||+|+++.++++
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  118 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVPTSIDTIVSTYAFHH  118 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCCSCCSEEEEESCGGG
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCCCCeEEEEECcchhc
Confidence            4678999999999999999999865 89999999999999999865    378999999999876689999999999988


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  280 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~  280 (343)
                      +.     ......+++++.++|||||.+++..++....
T Consensus       119 ~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  151 (220)
T 3hnr_A          119 LT-----DDEKNVAIAKYSQLLNKGGKIVFADTIFADQ  151 (220)
T ss_dssp             SC-----HHHHHHHHHHHHHHSCTTCEEEEEEECBSSH
T ss_pred             CC-----hHHHHHHHHHHHHhcCCCCEEEEEeccccCh
Confidence            83     2233448999999999999999987665443

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.66  E-value=9.3e-16  Score=133.98  Aligned_cols=107  Identities=20%  Similarity=0.282  Sum_probs=90.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCC-----ceEEEEccCCCCcc-CCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKL-ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~-----~i~~~~~D~~~~~~-~~~fD~V~  235 (343)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++...+++     +++++++|+...+. .++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            4578999999999999999999743 48999999999999999998877664     79999999976654 47899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +..+++++.     ......+++++.++|||||+++++.
T Consensus       108 ~~~~l~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          108 VIEVIEHLD-----LSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             EESCGGGCC-----HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             eHHHHHcCC-----HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            999999882     2455788999999999999666553

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.66  E-value=2.2e-16  Score=137.34  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=90.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.      ++.+.++|+...+.+++||+|++..++++
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  114 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------GRPVRTMLFHQLDAIDAYDAVWAHACLLH  114 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCCCSCEEEEEECSCGGG
T ss_pred             CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------CCceEEeeeccCCCCCcEEEEEecCchhh
Confidence            5678999999999999999999875 8999999999999999986      56788999988877789999999999988


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +.     ..+...+++++.++|||||++++..+..
T Consensus       115 ~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~  144 (211)
T 3e23_A          115 VP-----RDELADVLKLIWRALKPGGLFYASYKSG  144 (211)
T ss_dssp             SC-----HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cC-----HHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence            72     3467789999999999999999986654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.66  E-value=3.4e-16  Score=141.78  Aligned_cols=107  Identities=21%  Similarity=0.361  Sum_probs=94.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.+++++...+.+++.++++|+.+.+. +++||+|+++.++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  115 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL  115 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence            568899999999999999999883 34899999999999999999998888889999999998765 6899999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++       .+...+++++.++|||||++++..+.
T Consensus       116 ~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A          116 EHL-------QSPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             GGC-------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhc-------CCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            988       34457889999999999999997643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.66  E-value=3.3e-16  Score=144.80  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=94.6

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      ..++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|++++...++. +++++++|+.+.++ +++||+|++..
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  193 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE  193 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence            356889999999999999999988 65 8999999999999999999998874 79999999998765 58999999999


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++++        +...+++++.++|||||++++.++..
T Consensus       194 ~l~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          194 STMYV--------DLHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             CGGGS--------CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             chhhC--------CHHHHHHHHHHHcCCCcEEEEEEccc
Confidence            99887        15678899999999999999976533

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.66  E-value=4.8e-16  Score=138.75  Aligned_cols=106  Identities=13%  Similarity=0.210  Sum_probs=92.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++....  .+++++++|+...++ +++||+|++..+++
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  169 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence            457899999999999999999886557999999999999999987654  479999999988765 57899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++.     ..+...+++++.++|||||++++..+
T Consensus       170 ~~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          170 YLT-----DADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hCC-----HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            873     24577899999999999999999775

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.66  E-value=3.7e-16  Score=142.74  Aligned_cols=114  Identities=22%  Similarity=0.257  Sum_probs=93.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC----CceEEEEccCCCCc----cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----SCIKFLVDDVLDTK----LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~----~~i~~~~~D~~~~~----~~~~fD~V  234 (343)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++....+.    .++.+..+|+...+    .+++||+|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence            4578999999999999999999976 999999999999999988644332    36889999988865    46899999


Q ss_pred             EEC-ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          235 MDK-GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       235 ~~~-~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++. .+++++.-..........+++++.++|||||++++..++.
T Consensus       135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence            998 7888883111123457789999999999999999988764

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.65  E-value=1.2e-15  Score=129.93  Aligned_cols=118  Identities=16%  Similarity=0.210  Sum_probs=98.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc--eEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~--i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++...++++  ++++++|+.+...+++||+|+++.++
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  129 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI  129 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCS
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCCc
Confidence            467899999999999999999984 499999999999999999999888766  99999999886556789999998776


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH-HHHHHH
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE-LVHEVS  287 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~-~~~~~~  287 (343)
                      ++.      ......+++++.++|+|||.+++..++..... +.+.+.
T Consensus       130 ~~~------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~  171 (194)
T 1dus_A          130 RAG------KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMK  171 (194)
T ss_dssp             TTC------HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHH
T ss_pred             ccc------hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHH
Confidence            542      25667889999999999999999888765433 444443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.65  E-value=3.1e-16  Score=137.01  Aligned_cols=108  Identities=21%  Similarity=0.344  Sum_probs=95.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.+  ..+|+|+|+|+.+++.+++++...++++++++++|+.+.+. +++||+|++..+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  115 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT  115 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh
Confidence            567899999999999999999884  24899999999999999999988887789999999988765 578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++++       .+...+++++.++|||||.+++..+..
T Consensus       116 l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A          116 FHEL-------SEPLKFLEELKRVAKPFAYLAIIDWKK  146 (219)
T ss_dssp             GGGC-------SSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             hhhc-------CCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence            9888       355678999999999999999976543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.65  E-value=5.6e-16  Score=142.23  Aligned_cols=110  Identities=19%  Similarity=0.315  Sum_probs=93.6

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC---CceEEEEccCCCCccCCCccEEEEC-cc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKLERQFQLVMDK-GT  239 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~---~~i~~~~~D~~~~~~~~~fD~V~~~-~~  239 (343)
                      ++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|++++...+.   .+++++++|+.+.+.+++||+|++. .+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  160 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGS  160 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcc
Confidence            345999999999999999999975 899999999999999999887663   4799999999998778899999975 44


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      ++++     .+.+...+++++.++|||||+|++..++...
T Consensus       161 ~~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  195 (299)
T 3g2m_A          161 INEL-----DEADRRGLYASVREHLEPGGKFLLSLAMSEA  195 (299)
T ss_dssp             HTTS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred             cccC-----CHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence            4443     3456778999999999999999998877643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.65  E-value=2.7e-15  Score=127.90  Aligned_cols=114  Identities=21%  Similarity=0.285  Sum_probs=93.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEEC-ccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK-GTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~-~~l  240 (343)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++.     +++.++++|+.+.+. +++||+|+++ .++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~  118 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQISETDFDLIVSAGNVM  118 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCCCCCEEEEEECCCCG
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCCCCceeEEEECCcHH
Confidence            4678999999999999999999865 8999999999999999876     368999999998765 5789999998 566


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC---hHHHHHHHH
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST---KDELVHEVS  287 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~---~~~~~~~~~  287 (343)
                      +++.     ......+++++.++|+|||++++..++..   ..++.+.+.
T Consensus       119 ~~~~-----~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~  163 (195)
T 3cgg_A          119 GFLA-----EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAE  163 (195)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHH
T ss_pred             hhcC-----hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence            6552     34567889999999999999999776553   344444443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.65  E-value=1.4e-15  Score=132.95  Aligned_cols=106  Identities=19%  Similarity=0.259  Sum_probs=89.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCC-----ceEEEEccCCCCcc-CCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKL-ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~-----~i~~~~~D~~~~~~-~~~fD~V~  235 (343)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.+++++...+++     +++++++|+...+. .++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            4578999999999999999999853 49999999999999999998766653     79999999977654 57999999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +..+++++.     ......+++++.++|||||+++++
T Consensus       108 ~~~~l~~~~-----~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A          108 VIEVIEHLD-----ENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             EESCGGGCC-----HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             EHHHHHhCC-----HHHHHHHHHHHHHhhCCCEEEEEc
Confidence            999999882     234568899999999999966554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.65  E-value=1.2e-16  Score=143.66  Aligned_cols=139  Identities=19%  Similarity=0.220  Sum_probs=105.6

Q ss_pred             hhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 019324          136 CISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS  213 (343)
Q Consensus       136 ~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~  213 (343)
                      ...+.+++.++++.+ ++..++..+... .++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++..+++.
T Consensus        90 ~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~  168 (254)
T 2nxc_A           90 PLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR  168 (254)
T ss_dssp             EEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC
T ss_pred             EEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc
Confidence            345667777777777 566666666543 6788999999999999999999887 9999999999999999999998875


Q ss_pred             ceEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHH
Q 019324          214 CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEV  286 (343)
Q Consensus       214 ~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~  286 (343)
                       +++.++|+.+....++||+|+++...+.          ...++.++.++|||||+++++..... ...+...+
T Consensus       169 -v~~~~~d~~~~~~~~~fD~Vv~n~~~~~----------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l  231 (254)
T 2nxc_A          169 -PRFLEGSLEAALPFGPFDLLVANLYAEL----------HAALAPRYREALVPGGRALLTGILKDRAPLVREAM  231 (254)
T ss_dssp             -CEEEESCHHHHGGGCCEEEEEEECCHHH----------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred             -EEEEECChhhcCcCCCCCEEEECCcHHH----------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHH
Confidence             9999999876423578999999765433          34678999999999999999765443 33333333

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.65  E-value=1.5e-16  Score=142.83  Aligned_cols=110  Identities=19%  Similarity=0.259  Sum_probs=90.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-----------------------------C
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-----------------------------S  213 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-----------------------------~  213 (343)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.+++++...+.                             .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            45679999999999999999988655899999999999999998764320                             0


Q ss_pred             ce-EEEEccCCCCcc--C---CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          214 CI-KFLVDDVLDTKL--E---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       214 ~i-~~~~~D~~~~~~--~---~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++ .+.++|+.+..+  +   ++||+|++..+++++.   ....+...+++++.++|||||++++...
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC---PDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc---CChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence            27 999999988643  4   7899999999998652   2235677889999999999999999764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.65  E-value=2.9e-15  Score=136.44  Aligned_cols=108  Identities=14%  Similarity=0.301  Sum_probs=93.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.+++++...+. +++++.++|+.+.+  ++||+|++..++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD~v~~~~~l  139 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAF  139 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCG
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCeeEEEEeCch
Confidence            56789999999999999999954 65 999999999999999999987776 47999999998764  799999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +++.     ..+...+++++.++|||||++++..++..
T Consensus       140 ~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          140 EHFG-----HERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             GGTC-----TTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             hhcC-----hHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence            8883     13556788999999999999999776554

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.65  E-value=6.7e-16  Score=136.84  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=95.3

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECc-cccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~-~l~~  242 (343)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++....+. ++.++++|+.+.+.+++||+|++.. ++++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCccCCceEEEEcCccccc
Confidence            578999999999999999999875 899999999999999999988775 8999999999877668999999998 9888


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +    ....+...+++++.++|||||++++..++.
T Consensus       115 ~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A          115 I----IDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             C----CSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             c----CCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            7    234567789999999999999999976653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.65  E-value=8.8e-16  Score=138.17  Aligned_cols=128  Identities=14%  Similarity=0.146  Sum_probs=102.0

Q ss_pred             ccC-CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc---CCCccEEE
Q 019324          161 KYL-SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---ERQFQLVM  235 (343)
Q Consensus       161 ~~~-~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~---~~~fD~V~  235 (343)
                      ... ++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.|++++..+++. +++++++|+.+...   .++||+|+
T Consensus        45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           45 YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            335 68899999999999999999986559999999999999999999998885 69999999988753   57999999


Q ss_pred             ECcccccc---cc-CC---------CChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          236 DKGTLDAI---GL-HP---------DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       236 ~~~~l~~i---~~-~~---------~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                      ++.++...   .. .+         ........+++.+.++|||||++++..+.....++...+..
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~  190 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRK  190 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHH
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHH
Confidence            98776433   00 00         01134567899999999999999998887777777777664

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.64  E-value=1.5e-15  Score=130.91  Aligned_cols=109  Identities=18%  Similarity=0.286  Sum_probs=91.7

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      ...++ +|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+. ++.+.++|+.+.+. +++||+|++.. 
T Consensus        27 ~~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~-  102 (202)
T 2kw5_A           27 QIPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADAWEGIVSIF-  102 (202)
T ss_dssp             HSCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTTCSEEEEEC-
T ss_pred             hCCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCCccEEEEEh-
Confidence            33456 999999999999999999876 899999999999999999888775 89999999988764 57899999842 


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                       .++     ...+...+++++.++|||||++++..++...
T Consensus       103 -~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  136 (202)
T 2kw5_A          103 -CHL-----PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ  136 (202)
T ss_dssp             -CCC-----CHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred             -hcC-----CHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence             222     2356778999999999999999998876543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.64  E-value=1.2e-15  Score=133.81  Aligned_cols=108  Identities=26%  Similarity=0.410  Sum_probs=92.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++....+ .+++++++|+.+.+. +++||+|+++.+++
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            3478999999999999999999876 99999999999999999988777 589999999998764 57899999998843


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +..     ..+...+++++.++|||||++++..++.
T Consensus       115 ~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~  145 (227)
T 1ve3_A          115 HFE-----PLELNQVFKEVRRVLKPSGKFIMYFTDL  145 (227)
T ss_dssp             GCC-----HHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hCC-----HHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence            321     2566788999999999999999987763

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.64  E-value=5.1e-16  Score=142.99  Aligned_cols=110  Identities=21%  Similarity=0.239  Sum_probs=86.1

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC------ceEEEEccCCCC---------ccC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------CIKFLVDDVLDT---------KLE  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~------~i~~~~~D~~~~---------~~~  228 (343)
                      ++.+|||||||+|..+..++..+..+|+|+|+|+.||+.|+++....+..      +++|.+.|+...         ..+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            46899999999998777666665458999999999999999988765532      267888888321         134


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++||+|+|..+++++. +..   ....+++++.++|||||++++++++.
T Consensus       128 ~~FD~V~~~~~lhy~~-~~~---~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSF-HPR---HYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             SCEEEEEEESCGGGTC-STT---THHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCeeEEEECchHHHhC-CHH---HHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            7899999998887652 222   33588999999999999999988764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.64  E-value=2.1e-15  Score=136.28  Aligned_cols=107  Identities=24%  Similarity=0.347  Sum_probs=93.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.+++++...++. ++++.++|+.+.+. +++||+|++..++
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  139 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESL  139 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechh
Confidence            567899999999999999999863349999999999999999999888764 79999999998765 5789999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++       .+...+++++.++|||||++++..+.
T Consensus       140 ~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          140 HHM-------PDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             TTS-------SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhC-------CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence            888       34467899999999999999997654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.64  E-value=2.1e-16  Score=136.91  Aligned_cols=107  Identities=13%  Similarity=0.082  Sum_probs=89.2

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--CceEEEEccCCCCcc---CCC-ccEEEEC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTKL---ERQ-FQLVMDK  237 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~~i~~~~~D~~~~~~---~~~-fD~V~~~  237 (343)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..+++  ++++++++|+.+...   +++ ||+|+++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            5789999999999999998888766899999999999999999999987  689999999876432   468 9999998


Q ss_pred             ccccccccCCCChhhHHHHHHHH--hhccCCCcEEEEEecCCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSV--SKLVAPGGLLVITSCNST  278 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~--~~~LkpgG~lii~~~~~~  278 (343)
                      .++. .       .....+++.+  .++|+|||++++..+...
T Consensus       133 ~~~~-~-------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          133 PPFH-F-------NLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CCSS-S-------CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCC-C-------ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            7743 1       2344567777  778999999999877654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.64  E-value=5.5e-16  Score=134.25  Aligned_cols=114  Identities=17%  Similarity=0.317  Sum_probs=95.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++...+..++++.++|+.+. .+++||+|+++.++++
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-VDGKFDLIVANILAEI  137 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-CCSCEEEEEEESCHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-CCCCceEEEECCcHHH
Confidence            567899999999999999999887669999999999999999999988876799999999875 3579999999877654


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      +          ..+++++.++|||||++++...... ...+.+.+.
T Consensus       138 ~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~  173 (205)
T 3grz_A          138 L----------LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALA  173 (205)
T ss_dssp             H----------HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             H----------HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHH
Confidence            3          4678999999999999999754443 444444444

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.64  E-value=2.1e-15  Score=133.21  Aligned_cols=105  Identities=23%  Similarity=0.297  Sum_probs=89.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEE-Ccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD-KGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~-~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++.     ++++++++|+.+.+.+++||+|+| ..+++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  112 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRLGRKFSAVVSMFSSVG  112 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHcccCCCCcEEEEcCchHh
Confidence            4578999999999999999999865 8999999999999999875     478999999998777789999996 44777


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++    ....+...+++++.++|||||.+++..++.
T Consensus       113 ~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          113 YL----KTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             GC----CSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             hc----CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            76    334567789999999999999999976554

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.64  E-value=1.1e-15  Score=132.39  Aligned_cols=108  Identities=19%  Similarity=0.323  Sum_probs=91.4

Q ss_pred             CCCCeEEEEccCccHH-HHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLL-LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~-~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.+ ...++..+. +|+|+|+|+.+++.+++++...+ .+++++++|+.+.+. +++||+|++..++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCCCCceeEEEEcChH
Confidence            5678999999999998 445555565 89999999999999999987766 479999999998765 5789999999888


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++.     ..+...+++++.++|||||++++..++.
T Consensus       100 ~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A          100 FHMR-----KNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             HhCC-----HHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            8762     4567789999999999999999987654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.64  E-value=6.2e-16  Score=133.54  Aligned_cols=103  Identities=18%  Similarity=0.281  Sum_probs=90.3

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAI  243 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~i  243 (343)
                      +.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.     +++.++++|+.+.+. +++||+|++..+++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----CCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            67999999999999999999976 8999999999999999873     489999999998765 5899999999998887


Q ss_pred             ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          244 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       244 ~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      .     ..+...+++++.++|||||++++..++..
T Consensus       116 ~-----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          116 G-----PGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             C-----TTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             C-----HHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            2     23567889999999999999999876554

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.63  E-value=1.3e-15  Score=133.64  Aligned_cols=112  Identities=16%  Similarity=0.223  Sum_probs=88.7

Q ss_pred             CCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC----ccCCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~----~~~~~fD~V~~~~  238 (343)
                      ++.+|||||||+|.++..+++.. ...|+|+|+|+.+++.|++++...+++|+.++++|+.+.    ..+++||.|+++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            56799999999999999999873 237999999999999999999999888999999998874    2368999999864


Q ss_pred             cccccccCCCChhh----HHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          239 TLDAIGLHPDGPLK----RIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       239 ~l~~i~~~~~~~~~----~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +..+.   ......    ...+++++.++|||||++++.+.+.+
T Consensus       114 ~~p~~---~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~  154 (218)
T 3dxy_A          114 PDPWH---KARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP  154 (218)
T ss_dssp             CCCCC---SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             CCCcc---chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            32211   000000    12488999999999999999876654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.63  E-value=1.2e-15  Score=138.58  Aligned_cols=103  Identities=19%  Similarity=0.313  Sum_probs=91.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.     +++.+.++|+..++++++||+|++..++++
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  129 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRVDKPLDAVFSNAMLHW  129 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCCSSCEEEEEEESCGGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCcCCCcCEEEEcchhhh
Confidence            5678999999999999999999654 8999999999999999875     478999999999877789999999999988


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +       .+...+++++.++|||||++++..+...
T Consensus       130 ~-------~d~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          130 V-------KEPEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             C-------SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             C-------cCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            8       3556788999999999999999877653

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.63  E-value=1.9e-15  Score=133.86  Aligned_cols=108  Identities=24%  Similarity=0.359  Sum_probs=93.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECc-ccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~-~l~  241 (343)
                      .++.+|||+|||+|.++..+++.  .+|+|+|+|+.+++.++++....+ .+++++++|+.+.+.+++||+|++.. +++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            45689999999999999999988  489999999999999999988776 48999999999877678999999986 777


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++    ........+++++.++|||||++++..++.
T Consensus       109 ~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  140 (243)
T 3d2l_A          109 YL----QTEADVKQTFDSAARLLTDGGKLLFDVHSP  140 (243)
T ss_dssp             GC----CSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hc----CCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence            76    234567788999999999999999976653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.63  E-value=1.4e-15  Score=136.41  Aligned_cols=102  Identities=14%  Similarity=0.175  Sum_probs=89.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++ ..+.+++.+.++|+.+.++ +++||+|++..+++
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence            5578999999999999999999864 8999999999999999987 3333689999999988765 57899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ++       .+...+++++.++|||||++++.
T Consensus       116 ~~-------~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          116 LV-------PDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GC-------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hc-------CCHHHHHHHHHHHCCCCcEEEEE
Confidence            88       35567899999999999999987

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=2.4e-15  Score=134.54  Aligned_cols=104  Identities=17%  Similarity=0.267  Sum_probs=90.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++.     +++.++++|+.+.+.+++||+|+++.+++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  106 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----PNTNFGKADLATWKPAQKADLLYANAVFQ  106 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcCccCCcCEEEEeCchh
Confidence            45789999999999999999987 2348999999999999999872     58999999999877667899999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++       .+...+++++.++|||||++++..++..
T Consensus       107 ~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~  136 (259)
T 2p35_A          107 WV-------PDHLAVLSQLMDQLESGGVLAVQMPDNL  136 (259)
T ss_dssp             GS-------TTHHHHHHHHGGGEEEEEEEEEEEECCT
T ss_pred             hC-------CCHHHHHHHHHHhcCCCeEEEEEeCCCC
Confidence            88       3566789999999999999999876553

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.62  E-value=1.3e-15  Score=136.59  Aligned_cols=107  Identities=24%  Similarity=0.396  Sum_probs=93.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++....  ++++++++|+.+.+. +++||+|++..++
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  130 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPENNFDLIYSRDAI  130 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCTTCEEEEEEESCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCCCcEEEEeHHHHH
Confidence            56789999999999999999997 54 8999999999999999987654  589999999998765 6899999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++.     ..+...+++++.++|||||++++..+..
T Consensus       131 ~~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          131 LALS-----LENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HhcC-----hHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            8872     3577789999999999999999976533

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.62  E-value=1.7e-15  Score=131.52  Aligned_cols=101  Identities=21%  Similarity=0.292  Sum_probs=88.0

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~  242 (343)
                      ++.+|||+|||+|.++..+   +..+++|+|+|+.+++.++++.     +++.++++|+.+.+. +++||+|++..++++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  107 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVVLLFTTLEF  107 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEEEEESCTTT
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEEEEcChhhh
Confidence            5779999999999999888   4448999999999999999876     478999999988765 578999999999988


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      +       .+...+++++.++|||||.+++..++...
T Consensus       108 ~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A          108 V-------EDVERVLLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             C-------SCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred             c-------CCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence            7       35567899999999999999998887653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.62  E-value=1e-15  Score=135.93  Aligned_cols=103  Identities=23%  Similarity=0.339  Sum_probs=88.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC--c-cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--K-LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~--~-~~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++        ++++++|+.+.  + .+++||+|++..+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~~~  110 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMISHF  110 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence            5678999999999999999999876 899999999999999864        78899998774  3 3589999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      ++++.     ..+...+++++.++|||||++++..++...
T Consensus       111 l~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  145 (240)
T 3dli_A          111 VEHLD-----PERLFELLSLCYSKMKYSSYIVIESPNPTS  145 (240)
T ss_dssp             GGGSC-----GGGHHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred             hhhCC-----cHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence            99883     235678899999999999999998887653

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.62  E-value=6.9e-16  Score=131.18  Aligned_cols=108  Identities=14%  Similarity=0.128  Sum_probs=88.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-----CCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----ERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-----~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++...++ ++++++++|+.+...     .++||+|++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            46789999999999999999888766999999999999999999988886 479999999887432     578999999


Q ss_pred             CccccccccCCCChhhHHHHHHHH--hhccCCCcEEEEEecCCC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSV--SKLVAPGGLLVITSCNST  278 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~--~~~LkpgG~lii~~~~~~  278 (343)
                      +.++...        .....++.+  .++|+|||++++..+...
T Consensus       123 ~~~~~~~--------~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          123 DPPYAKQ--------EIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             CCCGGGC--------CHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCCCCch--------hHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            8775311        223344555  899999999999877654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.62  E-value=6.8e-17  Score=143.56  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=88.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...++ ++++++++|+.+...+++||+|+++.+++
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            468899999999999999999997 5999999999999999999999987 58999999998876678999999998887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +..       .....+.++.++|+|||++++.
T Consensus       156 ~~~-------~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          156 GPD-------YATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             SGG-------GGGSSSBCTTTSCSSCHHHHHH
T ss_pred             Ccc-------hhhhHHHHHHhhcCCcceeHHH
Confidence            662       2222456789999999986654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.62  E-value=6.3e-15  Score=132.46  Aligned_cols=108  Identities=16%  Similarity=0.212  Sum_probs=84.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC---CccCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD---TKLERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~---~~~~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|++++...   .+.....++..   ...+++||+|+++.+
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~---~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~  119 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR---CVTIDLLDITAEIPKELAGHFDFVLNDRL  119 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS---CCEEEECCTTSCCCGGGTTCCSEEEEESC
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc---cceeeeeecccccccccCCCccEEEEhhh
Confidence            5678999999999999999999976 8999999999999999987643   12222223222   123578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  280 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~  280 (343)
                      ++++.     ..+...+++++.++| |||+++++.......
T Consensus       120 l~~~~-----~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~  154 (261)
T 3iv6_A          120 INRFT-----TEEARRACLGMLSLV-GSGTVRASVKLGFYD  154 (261)
T ss_dssp             GGGSC-----HHHHHHHHHHHHHHH-TTSEEEEEEEBSCCH
T ss_pred             hHhCC-----HHHHHHHHHHHHHhC-cCcEEEEEeccCccc
Confidence            88763     355667899999999 999999987655443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.62  E-value=5.6e-15  Score=128.27  Aligned_cols=112  Identities=18%  Similarity=0.164  Sum_probs=91.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCC-ccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT-KLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~-~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+++ +++++++|+.+. .....||+|++...+
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            567899999999999999999985 48999999999999999999999987 899999999883 334589999987633


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                                 ... +++++.++|||||++++..+... ..++.+.++
T Consensus       133 -----------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~  168 (204)
T 3njr_A          133 -----------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHA  168 (204)
T ss_dssp             -----------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHH
T ss_pred             -----------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHH
Confidence                       223 78999999999999999877643 233344444

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.62  E-value=1.2e-15  Score=128.90  Aligned_cols=108  Identities=18%  Similarity=0.162  Sum_probs=88.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc--cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~--~~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.+++++...++. +++++++|+.+..  .++.||+|+++.+
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence            567899999999999999999987669999999999999999999988874 7999999988742  3567999999876


Q ss_pred             ccccccCCCChhhHHHHHHHHh--hccCCCcEEEEEecCCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNST  278 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~--~~LkpgG~lii~~~~~~  278 (343)
                      +..        ......++.+.  ++|+|||++++......
T Consensus       110 ~~~--------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          110 YAK--------ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             SHH--------HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCc--------chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            532        23344556665  99999999999876654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.61  E-value=5.5e-15  Score=129.14  Aligned_cols=125  Identities=15%  Similarity=0.138  Sum_probs=92.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--c-CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~-~~~fD~V~~~~  238 (343)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|++++...+++++.++++|+.++.  + +++||.|+++.
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            34679999999999999999987 23489999999999999999999988889999999998753  2 57899998754


Q ss_pred             ccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh-HHHHHHHH
Q 019324          239 TLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHEVS  287 (343)
Q Consensus       239 ~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~-~~~~~~~~  287 (343)
                      ...+... |.........+++++.++|||||.+++.+.+... ..+...+.
T Consensus       117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  167 (213)
T 2fca_A          117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFS  167 (213)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3221100 0000001246789999999999999998765432 23344443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.61  E-value=1.6e-15  Score=139.72  Aligned_cols=111  Identities=19%  Similarity=0.201  Sum_probs=94.3

Q ss_pred             cCCCCeEEEEccCccHHHHHHH--hcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELS--KQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la--~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      ..++.+|||||||+|.++..++  ..+..+|+|+|+|+.+++.+++++...++. +++++++|+.+.+.+++||+|+++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            3678899999999999999995  333348999999999999999999888764 4999999999987678999999999


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++++    ..+.....+++++.++|||||++++....
T Consensus       196 ~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          196 LNIYE----PDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             SGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hhhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            88877    33445556899999999999999997644

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3.6e-15  Score=136.82  Aligned_cols=103  Identities=16%  Similarity=0.243  Sum_probs=88.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHh--cCCCcEEEEeCChHHHHHHHHHHHHc--CCCceEEEEccCCCCcc-C------CCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSK--QGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTKL-E------RQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~--~g~~~v~gvD~s~~~i~~a~~~~~~~--~~~~i~~~~~D~~~~~~-~------~~f  231 (343)
                      .++.+|||||||+|.++..+++  .+..+|+|+|+|+.+++.|++++...  ...+++++++|+.+.+. .      ++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            4678999999999999999996  33459999999999999999998876  23589999999998764 4      689


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      |+|++..+++++        +...+++++.++|||||.+++.
T Consensus       115 D~V~~~~~l~~~--------~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          115 DMITAVECAHWF--------DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             EEEEEESCGGGS--------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEeHhhHHHHh--------CHHHHHHHHHHhcCCCcEEEEE
Confidence            999999998876        3457889999999999999883

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.61  E-value=5.7e-15  Score=136.65  Aligned_cols=109  Identities=13%  Similarity=0.216  Sum_probs=95.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.++++....++. ++++.++|+.+.+  ++||+|++..++
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l  165 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAF  165 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCG
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeChH
Confidence            56789999999999999999987 76 8999999999999999999887763 6999999998764  789999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      +++.     ..+...+++++.++|||||++++..+....
T Consensus       166 ~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          166 EHFG-----HENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             GGTC-----GGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             HhcC-----HHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            8873     246678899999999999999998776543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.61  E-value=8.6e-15  Score=126.62  Aligned_cols=115  Identities=11%  Similarity=0.058  Sum_probs=94.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.+++++...++++++++++|+.+... .++||+|++..++
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~  118 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSG  118 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCC
Confidence            567899999999999999999985 34899999999999999999998888789999999976543 3789999998765


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      .          ....+++++.++|||||++++..+... ..++.+.+.
T Consensus       119 ~----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~  156 (204)
T 3e05_A          119 G----------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLE  156 (204)
T ss_dssp             T----------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHH
T ss_pred             c----------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHH
Confidence            3          334788999999999999999866543 334444444

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.61  E-value=2.2e-15  Score=133.41  Aligned_cols=104  Identities=21%  Similarity=0.357  Sum_probs=90.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++...   .++.+.++|+...+. +++||+|++..+++
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  118 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFDLAYSSLALH  118 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCceEEEEecccc
Confidence            46789999999999999999998755899999999999999987643   379999999988765 57899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++       .+...+++++.++|||||++++..++
T Consensus       119 ~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          119 YV-------EDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             GC-------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cc-------chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            87       35567899999999999999998754

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.60  E-value=6.6e-15  Score=126.49  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=91.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|++++...++ ++++++++|+.+..  .+++||+|+++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  100 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN  100 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence            56789999999999999999987  334899999999999999999999887 68999999988764  35789999998


Q ss_pred             ccccccc--cCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIG--LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~--~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..+-...  ...........+++++.++|||||++++..+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A          101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            6551100  001223455678999999999999999986543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.60  E-value=5.2e-15  Score=134.58  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=86.4

Q ss_pred             ccCCCCeEEEEccCccHHH-HHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          161 KYLSSWSVLDIGTGNGLLL-QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~-~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      .+.++.+|||||||+|.++ ..+++....+|+|+|+|+.|++.|++++...|+.+++|+++|+.+++ +++||+|++...
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-d~~FDvV~~~a~  197 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-GLEFDVLMVAAL  197 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-GCCCSEEEECTT
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-CCCcCEEEECCC
Confidence            4578999999999999766 44555422489999999999999999999888778999999999875 689999998544


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                         +       .+...+++++.++|||||++++...
T Consensus       198 ---~-------~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          198 ---A-------EPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             ---C-------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             ---c-------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence               1       3455788999999999999999764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.60  E-value=3.2e-15  Score=130.64  Aligned_cols=101  Identities=25%  Similarity=0.387  Sum_probs=84.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC---c--cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---K--LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~---~--~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++      .++.+.+.|+.+.   +  ...+||+|++.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  123 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICAN  123 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEEC
Confidence            4568999999999999999999976 899999999999999986      3677888887765   2  24569999999


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      .+++ .       .+...+++++.++|||||++++..++..
T Consensus       124 ~~l~-~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~  156 (227)
T 3e8s_A          124 FALL-H-------QDIIELLSAMRTLLVPGGALVIQTLHPW  156 (227)
T ss_dssp             SCCC-S-------SCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             chhh-h-------hhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence            8886 3       2445788999999999999999887653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.60  E-value=4e-15  Score=129.16  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=89.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...+.++++++++|+.+... .++||+|++..+++
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~  154 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPP  154 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchh
Confidence            568899999999999999999985 4999999999999999999999888789999999988644 57899999999888


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++.             +++.++|||||++++..++
T Consensus       155 ~~~-------------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          155 EIP-------------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SCC-------------THHHHTEEEEEEEEEEECS
T ss_pred             hhh-------------HHHHHhcccCcEEEEEEcC
Confidence            773             3688999999999998776

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.60  E-value=1.3e-15  Score=135.01  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=88.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC--cc-CCCccEEEE-Cc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KL-ERQFQLVMD-KG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~--~~-~~~fD~V~~-~~  238 (343)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|+++....+ .++.++++|+.+.  ++ +++||+|++ ..
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4578999999999999999988765589999999999999999988777 5899999999876  44 579999999 44


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+ .+  +.........+++++.++|||||++++...
T Consensus       138 ~~-~~--~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          138 PL-SE--ETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             CC-BG--GGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             cc-ch--hhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            43 22  112234556778999999999999998644

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.59  E-value=4.7e-15  Score=136.99  Aligned_cols=119  Identities=19%  Similarity=0.202  Sum_probs=95.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-------CCCceEEEEccCCCCc----c---C
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GFSCIKFLVDDVLDTK----L---E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-------~~~~i~~~~~D~~~~~----~---~  228 (343)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++....       +..+++++++|+...+    +   +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            357899999999999999999875559999999999999999987654       2347999999998865    2   3


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~  286 (343)
                      ++||+|+++.+++++.   ....+...+++++.++|||||.+++.+++.  .++...+
T Consensus       113 ~~fD~V~~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~li~~~~~~--~~l~~~~  165 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSF---ESYEQADMMLRNACERLSPGGYFIGTTPNS--FELIRRL  165 (313)
T ss_dssp             CCEEEEEEETCGGGGG---GSHHHHHHHHHHHHTTEEEEEEEEEEEECH--HHHHHHH
T ss_pred             CCEEEEEEecchhhcc---CCHHHHHHHHHHHHHHhCCCcEEEEecCCh--HHHHHHH
Confidence            5899999999887762   223456789999999999999999988765  3444433

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.59  E-value=6.4e-15  Score=124.12  Aligned_cols=105  Identities=20%  Similarity=0.152  Sum_probs=87.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccC--CCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE--RQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~--~~fD~V~~~~  238 (343)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...+.+ ++ ++++|..+....  ++||+|++..
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence            56779999999999999999987 2348999999999999999999988886 78 888888653222  7899999988


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      ++++           ..+++++.++|||||++++..+....
T Consensus       103 ~~~~-----------~~~l~~~~~~L~~gG~l~~~~~~~~~  132 (178)
T 3hm2_A          103 GLTA-----------PGVFAAAWKRLPVGGRLVANAVTVES  132 (178)
T ss_dssp             -TTC-----------TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred             cccH-----------HHHHHHHHHhcCCCCEEEEEeecccc
Confidence            7754           25679999999999999998776543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.59  E-value=1.2e-14  Score=127.89  Aligned_cols=114  Identities=16%  Similarity=0.180  Sum_probs=90.2

Q ss_pred             CCCCeEEEEccC-ccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTG-NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~  239 (343)
                      .++.+|||+||| +|.++..+++.+..+|+|+|+|+.+++.|++++..++. +++++++|+....  .+++||+|+++.+
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeEEEECCC
Confidence            568899999999 99999999988324899999999999999999999987 8999999975432  2579999999877


Q ss_pred             cccccc------------CCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGL------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~------------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +.....            ..........+++++.++|||||++++..+..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            644310            00112234678999999999999999976654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.59  E-value=3.1e-15  Score=136.15  Aligned_cols=104  Identities=10%  Similarity=0.034  Sum_probs=90.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++..+++.+ ++++++|+.+....++||+|+++....
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~~  203 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVR  203 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSS
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCchh
Confidence            5688999999999999999999876579999999999999999999998864 999999999987778999999865432


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .           ..++.++.++|||||++++.++..
T Consensus       204 ~-----------~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          204 T-----------HEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             G-----------GGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             H-----------HHHHHHHHHHCCCCeEEEEEEeec
Confidence            2           356789999999999999977653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.59  E-value=1.2e-14  Score=131.87  Aligned_cols=125  Identities=20%  Similarity=0.293  Sum_probs=98.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.+++++..+++++++++++|+.+...+++||+|+++.++.
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  187 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence            45779999999999999999965 33489999999999999999999888778999999998754467899999986543


Q ss_pred             ccc----------cCCC--------ChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          242 AIG----------LHPD--------GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       242 ~i~----------~~~~--------~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      ...          ..|.        +......+++.+.++|||||++++........++.+.+.
T Consensus       188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~  251 (276)
T 2b3t_A          188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFI  251 (276)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHH
T ss_pred             CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHH
Confidence            210          0010        013456788999999999999999877777666666555

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=1.7e-14  Score=129.89  Aligned_cols=124  Identities=18%  Similarity=0.195  Sum_probs=95.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHH---cCCC-ceEEEEccCCCCc--------cCC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANR---DGFS-CIKFLVDDVLDTK--------LER  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~---~~~~-~i~~~~~D~~~~~--------~~~  229 (343)
                      .++.+|||+|||+|.++..++... ..+|+|+|+++.+++.|++++..   +++. +++++++|+.+..        .++
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            557799999999999999999884 24899999999999999999988   7774 6999999999872        257


Q ss_pred             CccEEEECccccccc------------cCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          230 QFQLVMDKGTLDAIG------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~------------~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      +||+|+++.++....            .|. .......+++.+.++|||||++++..+.....++...+.
T Consensus       115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~  183 (260)
T 2ozv_A          115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAM-TEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACG  183 (260)
T ss_dssp             CEEEEEECCCC----------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHT
T ss_pred             CcCEEEECCCCcCCCCCCCcCHHHHHHhhc-CcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHH
Confidence            899999996654321            000 112356788999999999999999877665555655554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.58  E-value=2.1e-15  Score=133.98  Aligned_cols=108  Identities=13%  Similarity=0.103  Sum_probs=86.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|..+..+++.+..+++|||+|+.+++.|+++....+. ++.++.+|+....   .+++||.|+...+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccccccCCceEEEeee
Confidence            56789999999999999999987545899999999999999999988774 7899999876542   3678999987544


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ......  ....+...+++++.|+|||||+|++.
T Consensus       138 ~~~~~~--~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          138 PLSEET--WHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             CCBGGG--TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ecccch--hhhcchhhhhhhhhheeCCCCEEEEE
Confidence            332211  12256678899999999999999874

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.58  E-value=1e-14  Score=126.26  Aligned_cols=107  Identities=18%  Similarity=0.122  Sum_probs=90.3

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.+++++...+++++++.++|+.+....++||+|+++..   
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~---  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF---  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence            4679999999999999999986 334899999999999999999999888779999999998765678999998642   


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                              .....+++.+.++|+|||++++........+
T Consensus       142 --------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  172 (207)
T 1jsx_A          142 --------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDE  172 (207)
T ss_dssp             --------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHH
T ss_pred             --------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHH
Confidence                    1234788999999999999999866554443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.58  E-value=1.8e-14  Score=125.63  Aligned_cols=115  Identities=17%  Similarity=0.208  Sum_probs=89.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--c-CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~-~~~fD~V~~~~  238 (343)
                      .++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.|++++...+++++.++++|+.+..  + +++||+|+++.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            346799999999999999999873 3489999999999999999999888889999999998865  3 57899999875


Q ss_pred             ccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          239 TLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       239 ~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ...+... |.........+++++.++|+|||++++.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  159 (214)
T 1yzh_A          120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR  159 (214)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH
T ss_pred             CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH
Confidence            4322100 00000012468899999999999999987543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.58  E-value=2.9e-15  Score=129.83  Aligned_cols=106  Identities=10%  Similarity=-0.028  Sum_probs=86.3

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-c-cCCCccEEEECcccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-LERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~-~~~~fD~V~~~~~l~  241 (343)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++..+++++++++++|+.+. + ..++||+|+++..+.
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            57899999999999999988887669999999999999999999998877899999998763 2 256899999987643


Q ss_pred             ccccCCCChhhHHHHHHHHhh--ccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSK--LVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~--~LkpgG~lii~~~~~  277 (343)
                       .       .....+++.+.+  +|+|||++++.....
T Consensus       134 -~-------~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          134 -R-------GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             -T-------TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             -C-------CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence             1       233345666654  699999999876644

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.57  E-value=1.2e-14  Score=133.08  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=81.4

Q ss_pred             CCCCeEEEEccCccHHHHHH----HhcC-CCcE--EEEeCChHHHHHHHHHHHHc-CCCceEEE--EccCCCCc------
Q 019324          163 LSSWSVLDIGTGNGLLLQEL----SKQG-FSDL--TGVDYSEDAINLAQSLANRD-GFSCIKFL--VDDVLDTK------  226 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~l----a~~g-~~~v--~gvD~s~~~i~~a~~~~~~~-~~~~i~~~--~~D~~~~~------  226 (343)
                      .++.+|||||||+|.++..+    +..+ ...|  +|+|+|+.|++.|++++... +++++.+.  .+++.+..      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            45679999999999766533    3322 2233  99999999999999988653 44555554  45554332      


Q ss_pred             -cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          227 -LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       227 -~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                       .+++||+|++..+++++       .+....+++++++|||||++++...+.
T Consensus       131 ~~~~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             TCCCCEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cCCCceeEEEEeeeeeec-------CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence             25789999999999998       466788999999999999999976554

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.57  E-value=1.1e-14  Score=138.16  Aligned_cols=112  Identities=20%  Similarity=0.272  Sum_probs=95.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC-CCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++..+++ +++++++|+.+.... ++||+|+++.+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~~~~fD~Ii~npp~~  309 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTEEARFDIIVTNPPFH  309 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhccccCCCeEEEEECCchh
Confidence            3678999999999999999999975 999999999999999999999886 599999999987654 7999999998887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +..  .........+++++.++|||||+++++.....
T Consensus       310 ~~~--~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          310 VGG--AVILDVAQAFVNVAAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             TTC--SSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred             hcc--cccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence            521  11235667889999999999999999766553

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.57  E-value=3.4e-15  Score=125.14  Aligned_cols=101  Identities=15%  Similarity=0.220  Sum_probs=86.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++     .+++++.++| .. ..+++||+|++..++++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~-~~~~~~D~v~~~~~l~~   87 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDP-KE-IPDNSVDFILFANSFHD   87 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSG-GG-SCTTCEEEEEEESCSTT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CC-CCCCceEEEEEccchhc
Confidence            5677999999999999999999875 999999999999999988     2589999999 22 13578999999999988


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +       .+...+++++.++|||||++++..+...
T Consensus        88 ~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           88 M-------DDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             C-------SCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             c-------cCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            7       3456789999999999999999876543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.57  E-value=8.2e-15  Score=130.25  Aligned_cols=107  Identities=18%  Similarity=0.220  Sum_probs=88.3

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~~~  238 (343)
                      ++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.+++++...++++++++++|+.+...    +++||+|++..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            5789999999999999999864 234899999999999999999999888789999999877542    47899999865


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      +           .....+++.+.++|||||++++........+
T Consensus       150 ~-----------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~  181 (240)
T 1xdz_A          150 V-----------ARLSVLSELCLPLVKKNGLFVALKAASAEEE  181 (240)
T ss_dssp             C-----------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHH
T ss_pred             c-----------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHH
Confidence            2           2345788999999999999999765554443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.57  E-value=6.8e-15  Score=131.77  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=91.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~~  237 (343)
                      .++.+|||||||+|..+..++.. +..+|+++|+|+.+++.+++++...++.+++++++|+.+...    .++||+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            45789999999999999999876 345899999999999999999999998889999999987643    3789999997


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  282 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  282 (343)
                      .+.           ....+++.+.++|||||++++.......+++
T Consensus       159 a~~-----------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~  192 (249)
T 3g89_A          159 AVA-----------PLCVLSELLLPFLEVGGAAVAMKGPRVEEEL  192 (249)
T ss_dssp             SSC-----------CHHHHHHHHGGGEEEEEEEEEEECSCCHHHH
T ss_pred             CcC-----------CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHH
Confidence            542           2346789999999999999987766554443

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=3.8e-15  Score=134.04  Aligned_cols=99  Identities=15%  Similarity=0.197  Sum_probs=86.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++.      +++++++|+.+.+. +++||+|++..+++
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPDKSVDGVISILAIH  105 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCTTCBSEEEEESCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCCCCEeEEEEcchHh
Confidence            5678999999999999999999764 9999999999999887643      79999999998775 58999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++       .+...+++++.++|| ||++++.+++
T Consensus       106 ~~-------~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A          106 HF-------SHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             GC-------SSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             hc-------cCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            88       456688999999999 9988887665

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.56  E-value=1e-14  Score=138.70  Aligned_cols=106  Identities=20%  Similarity=0.367  Sum_probs=90.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHc-----C-C--CceEEEEccCCCC------c
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-----G-F--SCIKFLVDDVLDT------K  226 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~-----~-~--~~i~~~~~D~~~~------~  226 (343)
                      .++.+|||||||+|.++..+++.  ...+|+|+|+|+.+++.+++++...     | .  ++++|+++|+.+.      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            56889999999999999999886  2348999999999999999987654     3 2  4899999999885      4


Q ss_pred             c-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          227 L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       227 ~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      + +++||+|+++.+++++       .+...+++++.++|||||++++...
T Consensus       162 ~~~~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLS-------TNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             CCTTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhcC-------CCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            3 5799999999999887       3456889999999999999999754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.56  E-value=1.2e-14  Score=137.68  Aligned_cols=114  Identities=15%  Similarity=0.130  Sum_probs=90.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCC---ceEEEEccCCCCccCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS---CIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~---~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.+++++..+++.   +++|+.+|+.+...+++||+|+++.
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np  300 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP  300 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence            345899999999999999999984 348999999999999999999988764   5899999999865567999999998


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++++..  .........+++++.++|||||+++++.....
T Consensus       301 pfh~~~--~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~  338 (375)
T 4dcm_A          301 PFHQQH--ALTDNVAWEMFHHARRCLKINGELYIVANRHL  338 (375)
T ss_dssp             CC---------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             CcccCc--ccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence            886531  11112344688999999999999999765443

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.56  E-value=4.2e-14  Score=125.53  Aligned_cols=116  Identities=17%  Similarity=0.123  Sum_probs=84.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHH------cCCCceEEEEccCCC-Cc--c-CCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANR------DGFSCIKFLVDDVLD-TK--L-ERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~------~~~~~i~~~~~D~~~-~~--~-~~~f  231 (343)
                      .++.+|||||||+|.++..+++.. ...|+|+|+|+.|++.|++++..      .+..++.++++|+.+ ++  + +++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            456789999999999999999873 34899999999999999988754      455789999999987 33  2 6789


Q ss_pred             cEEEECcccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          232 QLVMDKGTLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       232 D~V~~~~~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      |.|+++..-.+... |.........+++++.++|||||.|++.+.+..
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~  172 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLE  172 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHH
Confidence            99987543222100 000000013688999999999999999877643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.56  E-value=2.3e-15  Score=127.51  Aligned_cols=103  Identities=13%  Similarity=0.064  Sum_probs=85.1

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      +.++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.+++++..+|.. ++.+  .|.....++++||+|++..+
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM  124 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence            366889999999999999999877 2239999999999999999999999875 4655  66655556789999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ++++       .+....+.++.+.|+|||+++--
T Consensus       125 LHlL-------~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          125 LPVL-------KQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             HHHH-------HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             HHhh-------hhhHHHHHHHHHHhCCCCEEEEe
Confidence            9888       33334456899999999987764

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.55  E-value=5.4e-14  Score=141.95  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=96.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC--CcEEEEeCChHHHHHHHHHHHH------cCCCceEEEEccCCCCcc-CCCccE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANR------DGFSCIKFLVDDVLDTKL-ERQFQL  233 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~v~gvD~s~~~i~~a~~~~~~------~~~~~i~~~~~D~~~~~~-~~~fD~  233 (343)
                      .++.+|||||||+|.++..|++.+.  .+|+|+|+|+.|++.|++++..      .+.++++|+++|+.+.+. +++||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            4688999999999999999999862  4899999999999999986653      245689999999999876 589999


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  283 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~  283 (343)
                      |++..+++|+.     ......+++++.++|||| .+++.+++.......
T Consensus       800 VV~~eVLeHL~-----dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF  843 (950)
T 3htx_A          800 GTCLEVIEHME-----EDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTIL  843 (950)
T ss_dssp             EEEESCGGGSC-----HHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHH
T ss_pred             EEEeCchhhCC-----hHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhh
Confidence            99999999983     234456889999999999 888888887654443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.55  E-value=1.1e-14  Score=138.26  Aligned_cols=106  Identities=16%  Similarity=0.237  Sum_probs=90.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.|..+|+|+|+| .|++.|++++..+++. +++++++|+.+..++++||+|++..+..
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY  140 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence            5678999999999999999999987799999999 9999999999998874 5999999999987778999999966444


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .+.    .......+++.+.++|||||++++.
T Consensus       141 ~l~----~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          141 FLL----RESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             TBT----TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             ccc----chHHHHHHHHHHHhhCCCCeEEEEe
Confidence            431    1134566889999999999999874

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.55  E-value=4.4e-15  Score=124.22  Aligned_cols=105  Identities=19%  Similarity=0.230  Sum_probs=85.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~~  238 (343)
                      ++.+|||+|||+|.++..+++.+. .|+|+|+|+.+++.+++++...++ +++++++|+.+...     .++||+|+++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            678999999999999999999976 599999999999999999998887 89999999887421     24799999987


Q ss_pred             cccccccCCCChhhHHHHHHHHh--hccCCCcEEEEEecCCCh
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~--~~LkpgG~lii~~~~~~~  279 (343)
                      ++. -    . ..   .+++.+.  ++|||||++++.++....
T Consensus       119 ~~~-~----~-~~---~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          119 PYA-M----D-LA---ALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             CTT-S----C-TT---HHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             CCc-h----h-HH---HHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            764 1    1 12   2334454  999999999998776643

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.55  E-value=9.9e-16  Score=132.80  Aligned_cols=124  Identities=22%  Similarity=0.263  Sum_probs=75.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC-----CCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-----RQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~-----~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.+++++...+. +++++++|+.+...+     ++||+|++
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEE
Confidence            5678999999999999999999842 3899999999999999999988876 899999998873333     89999999


Q ss_pred             Ccccccccc-C------------------CCChhhHHHHHHHHhhccCCCcE-EEEEecCCChHHHHHHHH
Q 019324          237 KGTLDAIGL-H------------------PDGPLKRIMYWDSVSKLVAPGGL-LVITSCNSTKDELVHEVS  287 (343)
Q Consensus       237 ~~~l~~i~~-~------------------~~~~~~~~~~l~~~~~~LkpgG~-lii~~~~~~~~~~~~~~~  287 (343)
                      +.++..... +                  ..+......+++++.++|||||+ +++.........+...+.
T Consensus       108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~  178 (215)
T 4dzr_A          108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFA  178 (215)
T ss_dssp             CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTG
T ss_pred             CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHH
Confidence            866533210 0                  00111126788999999999999 555555555555554444

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.55  E-value=3.1e-14  Score=124.17  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=80.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC----ccCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~----~~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.+++...  .++.++++|+...    +..++||+|+++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            56789999999999999999887 3348999999999988777766543  4789999998874    335789999987


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ..      +   +.....+++++.++|||||++++..
T Consensus       134 ~~------~---~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          134 IA------Q---KNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CC------S---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cc------C---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            21      1   1344456899999999999999974

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.55  E-value=2.2e-14  Score=134.70  Aligned_cols=105  Identities=18%  Similarity=0.285  Sum_probs=88.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|++++..+++. +++++++|+.+.++ .++||+|++..+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            45789999999999999999999877999999995 999999999998875 49999999999876 4899999997654


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      ..+. +   ......++..+.++|||||+++.
T Consensus       144 ~~l~-~---~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          144 YCLF-Y---ESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBT-B---TCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccc-C---chhHHHHHHHHHHhCCCCCEEcc
Confidence            4431 1   13455788999999999999875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.54  E-value=2e-14  Score=134.93  Aligned_cols=106  Identities=19%  Similarity=0.248  Sum_probs=90.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|++++..+++ ++++++++|+.+..++++||+|++..++.
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence            46789999999999999999998767999999997 88999999998887 58999999999987677899999988776


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ++.     .......+.++.++|||||++++..
T Consensus       128 ~~~-----~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          128 MLF-----NERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             TBT-----TTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             cCC-----hHHHHHHHHHHHhhcCCCeEEEEec
Confidence            652     1234456788999999999998753

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.54  E-value=2.3e-14  Score=126.17  Aligned_cols=100  Identities=20%  Similarity=0.236  Sum_probs=87.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-ccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++....+  +++++++|+.+. ...++||+|++..+++
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~~  145 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEEEKPYDRVVVWATAP  145 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccccCCCccEEEECCcHH
Confidence            567899999999999999999987 599999999999999999987665  899999999873 3357899999999988


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++.             +++.++|||||++++..+...
T Consensus       146 ~~~-------------~~~~~~L~pgG~l~~~~~~~~  169 (231)
T 1vbf_A          146 TLL-------------CKPYEQLKEGGIMILPIGVGR  169 (231)
T ss_dssp             SCC-------------HHHHHTEEEEEEEEEEECSSS
T ss_pred             HHH-------------HHHHHHcCCCcEEEEEEcCCC
Confidence            773             478899999999999876553

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=2.6e-14  Score=124.47  Aligned_cols=102  Identities=15%  Similarity=0.160  Sum_probs=88.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-C-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.+ . .+|+++|+|+.+++.+++++...+.+++.+.++|+..... .++||+|++..+
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  155 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAA  155 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCc
Confidence            567899999999999999999874 2 4899999999999999999988887789999999865433 578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++++.             +++.++|||||++++.....
T Consensus       156 ~~~~~-------------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          156 GPKIP-------------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             BSSCC-------------HHHHHTEEEEEEEEEEESSS
T ss_pred             hHHHH-------------HHHHHHcCCCcEEEEEECCC
Confidence            88773             58899999999999987665

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.54  E-value=4.1e-14  Score=123.79  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=83.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..++..     +|+|+|+.+++.++++       ++.++++|+...+. +++||+|++..+++
T Consensus        46 ~~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  113 (219)
T 1vlm_A           46 LPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTIC  113 (219)
T ss_dssp             CCSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEEEEcchHh
Confidence            34779999999999999988764     9999999999999985       57899999988765 46899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++       .+...+++++.++|+|||.+++..++..
T Consensus       114 ~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~  143 (219)
T 1vlm_A          114 FV-------DDPERALKEAYRILKKGGYLIVGIVDRE  143 (219)
T ss_dssp             GS-------SCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             hc-------cCHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence            87       3456788999999999999999877654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.54  E-value=1.6e-14  Score=122.78  Aligned_cols=104  Identities=16%  Similarity=0.272  Sum_probs=89.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccC-CCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~-~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...+. .++.+.++|+.+.... +.||+|++..++
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCch
Confidence            567899999999999999999987 6999999999999999999998887 6899999998762222 589999998765


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++          ..+++++.++|+|||.+++..++.
T Consensus       111 ~~~----------~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A          111 GEL----------QEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             TCH----------HHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             HHH----------HHHHHHHHHhcCCCcEEEEEecCc
Confidence            433          467899999999999999987654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=2.9e-14  Score=127.51  Aligned_cols=112  Identities=14%  Similarity=0.155  Sum_probs=90.0

Q ss_pred             hhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc--c--C
Q 019324          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--L--E  228 (343)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~--~--~  228 (343)
                      +..+....++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|++++...++. +++++++|+.+..  .  .
T Consensus        55 l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~  134 (248)
T 3tfw_A           55 LALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGEC  134 (248)
T ss_dssp             HHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSC
T ss_pred             HHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCC
Confidence            333334467889999999999999999987 2 348999999999999999999998885 7999999987632  1  3


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++||+|++....          .....+++++.++|||||++++.....
T Consensus       135 ~~fD~V~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          135 PAFDLIFIDADK----------PNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             CCCSEEEECSCG----------GGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             CCeEEEEECCch----------HHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence            489999986532          344568899999999999999875543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.54  E-value=3.2e-14  Score=133.13  Aligned_cols=104  Identities=20%  Similarity=0.248  Sum_probs=87.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccC-CCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~-~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|++++..+++ ++++++++|+.+.+++ ++||+|++..+.
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence            56789999999999999999999766899999997 99999999998887 5899999999987664 789999997642


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLV  271 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~li  271 (343)
                      ..+  ..  ......++.++.++|||||+++
T Consensus       142 ~~l--~~--~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          142 YFL--LF--ESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTB--TT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhc--cC--HHHHHHHHHHHHhhcCCCcEEE
Confidence            222  11  1345578899999999999998

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.54  E-value=3.4e-14  Score=134.00  Aligned_cols=106  Identities=12%  Similarity=0.103  Sum_probs=85.8

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHH-------HHcCC--CceEEEEccCCCCccC---
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA-------NRDGF--SCIKFLVDDVLDTKLE---  228 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~-------~~~~~--~~i~~~~~D~~~~~~~---  228 (343)
                      ..++.+|||||||+|.+++.++.. |+.+|+|||+|+.+++.|+++.       ...|+  .+++|+++|+.+.++.   
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~  250 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI  250 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccccc
Confidence            367899999999999999999865 6546999999999999998754       33454  4899999999987652   


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..||+|+++.++. .       .+....|.+++++|||||+|++...
T Consensus       251 ~~aDVVf~Nn~~F-~-------pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          251 ANTSVIFVNNFAF-G-------PEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             HTCSEEEECCTTC-C-------HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             CCccEEEEccccc-C-------chHHHHHHHHHHcCCCCcEEEEeec
Confidence            4799999987652 1       4556677899999999999998643

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.53  E-value=9.7e-14  Score=129.35  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=89.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCcc-----CCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~~-----~~~fD~V~  235 (343)
                      .++.+|||+|||+|.++..++..|. +|+++|+|+.+++.|++|+..+++.  +++++++|+.+...     .++||+|+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            3567999999999999999999887 9999999999999999999998875  39999999987532     46899999


Q ss_pred             ECccccccccC---CCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          236 DKGTLDAIGLH---PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       236 ~~~~l~~i~~~---~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++...-...-.   .........+++.+.++|+|||++++.....
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            97653221000   0012345678899999999999977754433

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.53  E-value=2.2e-14  Score=126.88  Aligned_cols=103  Identities=14%  Similarity=0.255  Sum_probs=86.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc---CCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---ERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~---~~~fD~V~~~  237 (343)
                      .++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++...++. +++++++|+.+...   +++||+|++.
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            567899999999999999999852 348999999999999999999998874 89999999987633   6899999976


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ...          .....+++.+.++|||||++++...
T Consensus       150 ~~~----------~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          150 AAK----------AQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             TTS----------SSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             CcH----------HHHHHHHHHHHHhcCCCeEEEEeeC
Confidence            432          2344688999999999999998543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.53  E-value=2.6e-14  Score=128.47  Aligned_cols=101  Identities=23%  Similarity=0.344  Sum_probs=85.9

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~~  242 (343)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++..    .+  ++++|+.+.+. +++||+|++..++.+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~  126 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFPSGAFEAVLALGDVLS  126 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCCCCCEEEEEEcchhhh
Confidence            577999999999999999999875 89999999999999998754    12  88999988765 578999999887666


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +.      .+...+++++.++|||||++++..++.
T Consensus       127 ~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          127 YV------ENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             HC------SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             cc------ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            52      236678899999999999999987764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.53  E-value=4.4e-14  Score=130.81  Aligned_cols=127  Identities=15%  Similarity=0.188  Sum_probs=97.1

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEEC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK  237 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~  237 (343)
                      ...++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.+++++...+++++.++++|+..... +++||+|+++
T Consensus       115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence            3467889999999999999999986  224899999999999999999999998889999999988653 6789999986


Q ss_pred             ccccccc---cCCC-----Chh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          238 GTLDAIG---LHPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       238 ~~l~~i~---~~~~-----~~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      .......   .+++     ...       ....+++++.++|||||++++++|.....+....+.
T Consensus       195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~  259 (315)
T 1ixk_A          195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQ  259 (315)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHH
T ss_pred             CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHH
Confidence            5432221   1111     011       124788999999999999999998776554433333

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=5.1e-14  Score=118.76  Aligned_cols=112  Identities=16%  Similarity=0.191  Sum_probs=90.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.+++++...++++++++++|+.+...+++||+|+++.+ . 
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~-~-  110 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT-K-  110 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC-S-
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc-c-
Confidence            56789999999999999999994 45999999999999999999999888789999999987323468999999876 1 


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHHh
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVSN  288 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~~  288 (343)
                               ....+++++.++  |||.+++..++.. ..++.+.+++
T Consensus       111 ---------~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~  146 (183)
T 2yxd_A          111 ---------NIEKIIEILDKK--KINHIVANTIVLENAAKIINEFES  146 (183)
T ss_dssp             ---------CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ---------cHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHH
Confidence                     234677888888  9999999886543 2334444443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.52  E-value=3.6e-14  Score=124.46  Aligned_cols=117  Identities=17%  Similarity=0.219  Sum_probs=90.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc--cC-----CCcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LE-----RQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~--~~-----~~fD  232 (343)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|++++...++. +++++++|+.+..  ..     ++||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            56789999999999999999985 2 348999999999999999999988874 6999999986531  22     6899


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      +|++....++.       .....++..+ ++|||||++++...... ..+..+.+.
T Consensus       137 ~V~~d~~~~~~-------~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~  184 (221)
T 3u81_A          137 MVFLDHWKDRY-------LPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVR  184 (221)
T ss_dssp             EEEECSCGGGH-------HHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHH
T ss_pred             EEEEcCCcccc-------hHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHh
Confidence            99998766554       3444566777 99999999999655543 234444443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.52  E-value=2.4e-14  Score=129.96  Aligned_cols=120  Identities=18%  Similarity=0.154  Sum_probs=93.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~  235 (343)
                      .++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.+++++...++++++++++|+.+...     .++||+|+
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  161 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL  161 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence            56789999999999999999984  435899999999999999999999998899999999987643     57899999


Q ss_pred             ECcccccccc---CC-CC-------hhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324          236 DKGTLDAIGL---HP-DG-------PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  282 (343)
Q Consensus       236 ~~~~l~~i~~---~~-~~-------~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  282 (343)
                      ++........   ++ ..       ......+++++.++|||||++++++|.....+.
T Consensus       162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~en  219 (274)
T 3ajd_A          162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEEN  219 (274)
T ss_dssp             EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSS
T ss_pred             EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHh
Confidence            9754432210   00 00       022357889999999999999999887754443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.52  E-value=6.7e-14  Score=123.52  Aligned_cols=100  Identities=10%  Similarity=0.184  Sum_probs=82.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----CccCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----TKLERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~----~~~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++. |..+|+|+|+|+.+++.+++++...  +++.++++|+..    .++.++||+|+..
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccCccEEEEEEe
Confidence            46789999999999999999987 5458999999999999999987655  589999999987    5445789999932


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                           +    ..+.....+++++.++|||||++++.
T Consensus       151 -----~----~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          151 -----V----AQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             -----C----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----c----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence                 1    22234456789999999999999996

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.51  E-value=4.6e-14  Score=133.10  Aligned_cols=105  Identities=23%  Similarity=0.271  Sum_probs=87.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++++|||||||+|.++..+++.|+.+|+|||.|+ +++.|+++++.+++. +|+++.+|+.+..+++++|+|++... .
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~-~  159 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWM-G  159 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCC-B
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecc-c
Confidence            45789999999999999999999988999999996 789999999999984 69999999999988899999998532 2


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      ...++.   .....++....++|||||+++.
T Consensus       160 ~~l~~e---~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          160 YGLLHE---SMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TTBTTT---CSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccc---chhhhHHHHHHhhCCCCceECC
Confidence            222111   2445677888899999999875

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.51  E-value=8e-14  Score=121.95  Aligned_cols=103  Identities=19%  Similarity=0.287  Sum_probs=87.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC--cc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~--~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.| .+++|+|+|+.+++.++++.       .++.++|+.+.  +. +++||+|++..+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            457899999999999999999986 59999999999999998743       37899998863  33 478999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  280 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~  280 (343)
                      ++++       .+...+++++.++|+|||++++..++....
T Consensus       103 l~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  136 (230)
T 3cc8_A          103 LEHL-------FDPWAVIEKVKPYIKQNGVILASIPNVSHI  136 (230)
T ss_dssp             GGGS-------SCHHHHHHHTGGGEEEEEEEEEEEECTTSH
T ss_pred             hhhc-------CCHHHHHHHHHHHcCCCCEEEEEeCCcchH
Confidence            9888       244578999999999999999988876543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.51  E-value=4.9e-14  Score=124.78  Aligned_cols=103  Identities=16%  Similarity=0.261  Sum_probs=87.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++...++.++.+..+|+..... ..+||+|++..++.
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~  169 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAP  169 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCcHH
Confidence            56789999999999999999988425899999999999999999998888789999999733222 34699999998887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++.             +++.++|||||++++..++..
T Consensus       170 ~~~-------------~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          170 KIP-------------EPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             SCC-------------HHHHHTEEEEEEEEEEECSSS
T ss_pred             HHH-------------HHHHHhcCCCcEEEEEEecCC
Confidence            763             478899999999999877654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.51  E-value=4.9e-14  Score=130.57  Aligned_cols=101  Identities=18%  Similarity=0.229  Sum_probs=88.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++.+.  .+|+|+|+|+.+++.|++++...+++++++.++|+.+... .++||+|++..+
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~  153 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG  153 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCC
Confidence            5688999999999999999998743  2599999999999999999999888789999999988543 578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++++.             +.+.++|||||++++....
T Consensus       154 ~~~~~-------------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          154 VDEVP-------------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             BSCCC-------------HHHHHHEEEEEEEEEEBCB
T ss_pred             HHHHH-------------HHHHHhcCCCcEEEEEECC
Confidence            98773             5788899999999997543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.51  E-value=4.4e-14  Score=124.13  Aligned_cols=102  Identities=18%  Similarity=0.269  Sum_probs=86.9

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCC------CcEEEEeCChHHHHHHHHHHHHcC-----CCceEEEEccCCCCc----
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGF------SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTK----  226 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~------~~v~gvD~s~~~i~~a~~~~~~~~-----~~~i~~~~~D~~~~~----  226 (343)
                      ..++.+|||||||+|.++..+++...      .+|+++|+++.+++.|++++...+     ..+++++++|+.+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            35678999999999999999998732      389999999999999999998876     468999999998753    


Q ss_pred             c-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          227 L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       227 ~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      . .++||+|++...++++             ++++.++|||||++++..+.
T Consensus       158 ~~~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL-------------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC-------------CHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEcc
Confidence            2 4789999999887765             27889999999999997664

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.51  E-value=5e-13  Score=124.39  Aligned_cols=108  Identities=18%  Similarity=0.194  Sum_probs=90.8

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      +..+|||||||+|.++..+++. +..+++++|+ +.+++.+++++...++ ++++|..+|+.+ +.+..||+|++..+++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~~~D~v~~~~vlh  246 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPAGAGGYVLSAVLH  246 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCCSCSEEEEESCGG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCCCCcEEEEehhhc
Confidence            4579999999999999999886 3338999999 9999999999988776 579999999984 3444899999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++.     ......++++++++|||||++++......
T Consensus       247 ~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  278 (332)
T 3i53_A          247 DWD-----DLSAVAILRRCAEAAGSGGVVLVIEAVAG  278 (332)
T ss_dssp             GSC-----HHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred             cCC-----HHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence            773     23467899999999999999999766443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.51  E-value=3.8e-14  Score=124.19  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=89.4

Q ss_pred             hhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-----
Q 019324          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----  227 (343)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-----  227 (343)
                      +..+....++.+|||||||+|..+..+++. + ..+|+++|+++.+++.+++++...++. +++++++|+.+...     
T Consensus        50 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  129 (223)
T 3duw_A           50 LQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE  129 (223)
T ss_dssp             HHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc
Confidence            333334467889999999999999999987 2 248999999999999999999988875 59999999876421     


Q ss_pred             -CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          228 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                       .++||+|++....          .....+++.+.++|+|||++++.....
T Consensus       130 ~~~~fD~v~~d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          130 KYEPFDFIFIDADK----------QNNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             TCCCCSEEEECSCG----------GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             CCCCcCEEEEcCCc----------HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence             1679999986553          234478899999999999998865443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.50  E-value=2.4e-13  Score=121.51  Aligned_cols=113  Identities=19%  Similarity=0.226  Sum_probs=91.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCCccCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++++...++++ ++++++|+.+...+++||+|+++..
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~  171 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLP  171 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECSS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECCC
Confidence            56889999999999999999988 4 3599999999999999999999888765 9999999987655678999998422


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                                  ....+++++.++|+|||++++..+... ..+..+.+.
T Consensus       172 ------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~  208 (255)
T 3mb5_A          172 ------------QPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR  208 (255)
T ss_dssp             ------------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             ------------CHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH
Confidence                        113467999999999999999876543 333444444

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.50  E-value=1.8e-14  Score=131.55  Aligned_cols=109  Identities=21%  Similarity=0.257  Sum_probs=82.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-----------------CC-------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-----------------GF-------------  212 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-----------------~~-------------  212 (343)
                      .++.+|||||||+|.....++..+..+|+|+|+|+.|++.|++++...                 +.             
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            357899999999999655454433348999999999999999865421                 10             


Q ss_pred             CceEEEEccCCC-Ccc------CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          213 SCIKFLVDDVLD-TKL------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       213 ~~i~~~~~D~~~-~~~------~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ..+.++++|+.+ .++      +++||+|+++.+++++.   ....+...+++++.++|||||+|++..
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~---~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS---PDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            015678889887 332      35699999999998852   122567789999999999999999964

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=6.1e-14  Score=127.19  Aligned_cols=106  Identities=12%  Similarity=0.066  Sum_probs=89.3

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      ...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++|+..++++++.++++|+.+.+..++||+|+++.+
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p  195 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYV  195 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCc
Confidence            3467889999999999999999988 344899999999999999999999998889999999988733568999998765


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..           ...++..+.+.|+|||+++++....
T Consensus       196 ~~-----------~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          196 HK-----------THKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             SS-----------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cc-----------HHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            41           2246789999999999999865544

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.50  E-value=9.8e-14  Score=125.33  Aligned_cols=108  Identities=16%  Similarity=0.153  Sum_probs=87.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChH------HHHHHHHHHHHcCC-CceEEEEcc-CC--CCcc-CC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSED------AINLAQSLANRDGF-SCIKFLVDD-VL--DTKL-ER  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~------~i~~a~~~~~~~~~-~~i~~~~~D-~~--~~~~-~~  229 (343)
                      .++.+|||||||+|.++..+++. |. .+|+|+|+|+.      +++.+++++...++ ++++++++| ..  ..++ ++
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  121 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ  121 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence            56789999999999999999987 43 48999999997      99999999988776 479999998 33  3332 57


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +||+|++..+++++.       +...+++.+.++++|||++++.....
T Consensus       122 ~fD~v~~~~~l~~~~-------~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          122 HFDRVVLAHSLWYFA-------SANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             CCSEEEEESCGGGSS-------CHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             CEEEEEEccchhhCC-------CHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            899999999998872       23346677777788899999976544

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.50  E-value=2e-13  Score=128.78  Aligned_cols=109  Identities=17%  Similarity=0.119  Sum_probs=92.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~~  238 (343)
                      ....+|||||||+|.++..+++.. ..+++++|+ +.+++.|++++...++ ++++++.+|+.+..  .+++||+|++..
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            456899999999999999999862 338999999 9999999999887776 47999999999863  457899999998


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++++.     ..+...++++++++|||||++++.....
T Consensus       257 vlh~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (363)
T 3dp7_A          257 FLDCFS-----EEEVISILTRVAQSIGKDSKVYIMETLW  290 (363)
T ss_dssp             CSTTSC-----HHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred             hhhhCC-----HHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence            887662     3556788999999999999999976544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.49  E-value=4.5e-14  Score=128.82  Aligned_cols=119  Identities=18%  Similarity=0.277  Sum_probs=90.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCc---cEEEECcc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQF---QLVMDKGT  239 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~f---D~V~~~~~  239 (343)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++|+..+++. +++|+++|+.+. ..++|   |+|+++..
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FKEKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GGGGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cccccCCCCEEEEcCC
Confidence            56799999999999999999873348999999999999999999999886 499999999874 33578   99999855


Q ss_pred             ccccc--c-----CCCC-----hhhHHHHHHHHh-hccCCCcEEEEEecCCChHHHH
Q 019324          240 LDAIG--L-----HPDG-----PLKRIMYWDSVS-KLVAPGGLLVITSCNSTKDELV  283 (343)
Q Consensus       240 l~~i~--~-----~~~~-----~~~~~~~l~~~~-~~LkpgG~lii~~~~~~~~~~~  283 (343)
                      +....  +     |.+.     ..+...+++++. +.|+|||++++.........+.
T Consensus       202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~  258 (284)
T 1nv8_A          202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELK  258 (284)
T ss_dssp             CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHT
T ss_pred             CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHH
Confidence            43211  0     0000     011125789999 9999999999976665544443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.49  E-value=1.1e-13  Score=121.39  Aligned_cols=103  Identities=17%  Similarity=0.313  Sum_probs=86.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcC-----CCceEEEEccCCCCcc-CCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTKL-ERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~-----~~~i~~~~~D~~~~~~-~~~fD~V  234 (343)
                      .++.+|||+|||+|.++..+++. +. .+|+++|+|+.+++.+++++...+     ..++.++++|+..... .++||+|
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i  155 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  155 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence            56789999999999999999987 43 389999999999999999988754     3589999999986543 5789999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++...+.++.             +++.++|||||++++..+...
T Consensus       156 ~~~~~~~~~~-------------~~~~~~LkpgG~lv~~~~~~~  186 (226)
T 1i1n_A          156 HVGAAAPVVP-------------QALIDQLKPGGRLILPVGPAG  186 (226)
T ss_dssp             EECSBBSSCC-------------HHHHHTEEEEEEEEEEESCTT
T ss_pred             EECCchHHHH-------------HHHHHhcCCCcEEEEEEecCC
Confidence            9988876652             688999999999999877653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.49  E-value=3.9e-14  Score=124.66  Aligned_cols=101  Identities=14%  Similarity=0.215  Sum_probs=85.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC------CcEEEEeCChHHHHHHHHHHHHcC-----CCceEEEEccCCCCccC-C
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTKLE-R  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~------~~v~gvD~s~~~i~~a~~~~~~~~-----~~~i~~~~~D~~~~~~~-~  229 (343)
                      .++.+|||+|||+|.++..+++. +.      .+|+++|+++.+++.+++++...+     ..++++.++|+.+.... +
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  162 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA  162 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCC
Confidence            56789999999999999999885 42      489999999999999999987655     45899999999874333 7


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +||+|++...++++.             +++.++|||||++++....
T Consensus       163 ~fD~I~~~~~~~~~~-------------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          163 PYNAIHVGAAAPDTP-------------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             SEEEEEECSCBSSCC-------------HHHHHTEEEEEEEEEEESC
T ss_pred             CccEEEECCchHHHH-------------HHHHHHhcCCCEEEEEEec
Confidence            899999998887662             7889999999999998764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.49  E-value=4.6e-14  Score=123.78  Aligned_cols=105  Identities=23%  Similarity=0.303  Sum_probs=86.8

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc--C-----CCc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--E-----RQF  231 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~--~-----~~f  231 (343)
                      ..++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.+++++...++. +++++++|+.+...  .     ++|
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            356789999999999999999987 2 358999999999999999999988875 59999999866421  1     789


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      |+|++....          .....+++.+.++|||||++++....
T Consensus       142 D~v~~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          142 DLIYIDADK----------ANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             EEEEECSCG----------GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             cEEEECCCH----------HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            999975532          34456889999999999999996544

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.49  E-value=1.1e-13  Score=121.91  Aligned_cols=102  Identities=13%  Similarity=0.180  Sum_probs=83.7

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEE
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM  235 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~  235 (343)
                      +.++.+|||+|||+|.++..+++. |. .+|+|+|+|+.|++.+++++...  .|+..+.+|.....    ..+.+|+|+
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDvVf  152 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGVDGLY  152 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceEEEEE
Confidence            378999999999999999999987 43 48999999999999999987665  48999999987753    257899988


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +...      ++   .+...++.++.+.|||||+++++.
T Consensus       153 ~d~~------~~---~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          153 ADVA------QP---EQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             ECCC------CT---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eecc------CC---hhHHHHHHHHHHhccCCCEEEEEE
Confidence            6422      11   355678899999999999999864

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.49  E-value=6.7e-14  Score=133.13  Aligned_cols=125  Identities=11%  Similarity=0.085  Sum_probs=96.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCcc-----CCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~~-----~~~fD~V~  235 (343)
                      .++.+|||+|||+|.++..++..|+.+|+|+|+|+.|++.|++|+..+++.  +++|+++|+.+...     ..+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            567899999999999999999987768999999999999999999999986  89999999876421     35899999


Q ss_pred             ECcccccc--ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh--HHHHHHHH
Q 019324          236 DKGTLDAI--GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK--DELVHEVS  287 (343)
Q Consensus       236 ~~~~l~~i--~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~--~~~~~~~~  287 (343)
                      ++......  ............++..+.++|+|||+++++++....  +.+.+.+.
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~  346 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIE  346 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHH
Confidence            97654211  011122234456778889999999999998877653  33444443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.49  E-value=1.4e-13  Score=128.22  Aligned_cols=105  Identities=25%  Similarity=0.329  Sum_probs=87.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccC-CCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~-~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.|..+|+|+|+| .+++.|++++..+++. +++++++|+.+...+ ++||+|++..+.
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            4577999999999999999999887699999999 5999999999988874 699999999987664 789999997654


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      ..+. +   ......++..+.++|||||+++.
T Consensus       116 ~~l~-~---~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          116 YFLL-Y---ESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTBS-T---TCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhcc-c---HHHHHHHHHHHHhhcCCCeEEEE
Confidence            4431 1   13445678999999999999974

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.48  E-value=6.8e-14  Score=126.93  Aligned_cols=103  Identities=17%  Similarity=0.211  Sum_probs=87.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHc-CCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~-~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|+++.+++.+++++... +.+++++.++|+.+...+++||+|+++. 
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~~-  187 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI-  187 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECC-
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEEcC-
Confidence            56789999999999999999986  2348999999999999999999887 7678999999998854457899999831 


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                              +   +...+++++.++|||||++++.+++.
T Consensus       188 --------~---~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          188 --------P---DPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             --------S---CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             --------c---CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence                    1   12356799999999999999988765

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.48  E-value=5.5e-14  Score=123.59  Aligned_cols=99  Identities=24%  Similarity=0.343  Sum_probs=82.9

Q ss_pred             CeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc--c-CCCccEEEECc
Q 019324          166 WSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--L-ERQFQLVMDKG  238 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~--~-~~~fD~V~~~~  238 (343)
                      .+|||||||+|..+..+++. + ..+|+++|+|+.+++.|++++...++.  +++++++|+.+..  + +++||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            39999999999999999985 2 348999999999999999999998875  7999999987652  2 57899999865


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ..          .....+++.+.++|||||++++..
T Consensus       138 ~~----------~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          138 SP----------MDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             CT----------TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             cH----------HHHHHHHHHHHHHcCCCcEEEEeC
Confidence            32          233467899999999999999853

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.48  E-value=4.5e-13  Score=117.48  Aligned_cols=116  Identities=16%  Similarity=0.116  Sum_probs=93.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccC-CCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~-~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..++..+. .+|+|+|+++.+++.|++|+..+++. ++++.++|+.+.... ..||+|+..+.
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM   93 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence            5678999999999999999999863 48999999999999999999999985 699999999754332 36998886443


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                      -         ......++....+.|+++|++++... .....+.+.+..
T Consensus        94 G---------g~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~  132 (225)
T 3kr9_A           94 G---------GRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQD  132 (225)
T ss_dssp             C---------HHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHH
T ss_pred             C---------hHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHH
Confidence            2         12345788999999999999888654 566667666664

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.48  E-value=6.4e-14  Score=125.19  Aligned_cols=113  Identities=14%  Similarity=0.154  Sum_probs=86.9

Q ss_pred             CCCeEEEEccCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHc---CCCc-----------------------
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRD---GFSC-----------------------  214 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~---~~~~-----------------------  214 (343)
                      ++.+|||+|||+|.++..++..   +..+|+|+|+|+.+++.|++++...   ++.+                       
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4679999999999999999876   2238999999999999999987765   3321                       


Q ss_pred             ---eE-------------EEEccCCCCc------cCCCccEEEECcccccccc--CCCChhhHHHHHHHHhhccCCCcEE
Q 019324          215 ---IK-------------FLVDDVLDTK------LERQFQLVMDKGTLDAIGL--HPDGPLKRIMYWDSVSKLVAPGGLL  270 (343)
Q Consensus       215 ---i~-------------~~~~D~~~~~------~~~~fD~V~~~~~l~~i~~--~~~~~~~~~~~l~~~~~~LkpgG~l  270 (343)
                         ++             |.++|+.+..      ...+||+|+++.++....-  +.........+++++.++|+|||++
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               66             9999998854      2348999999877654320  0112356678899999999999999


Q ss_pred             EEEecC
Q 019324          271 VITSCN  276 (343)
Q Consensus       271 ii~~~~  276 (343)
                      +++...
T Consensus       211 ~~~~~~  216 (250)
T 1o9g_A          211 AVTDRS  216 (250)
T ss_dssp             EEEESS
T ss_pred             EEeCcc
Confidence            995443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.48  E-value=2e-13  Score=120.13  Aligned_cols=107  Identities=15%  Similarity=0.153  Sum_probs=85.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-Ccc--CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKL--ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-~~~--~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++     .++++++++|+.+ .+.  +++||+|+++..
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~  120 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSRRG  120 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEESC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeCCC
Confidence            5678999999999999999999965 899999999999999988     2589999999953 433  579999998622


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                      .             ..+++++.++|||||+++..........+...+..
T Consensus       121 ~-------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~  156 (226)
T 3m33_A          121 P-------------TSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAA  156 (226)
T ss_dssp             C-------------SGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHH
T ss_pred             H-------------HHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHH
Confidence            1             14568999999999999955444555666666653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.48  E-value=4.4e-13  Score=122.03  Aligned_cols=107  Identities=21%  Similarity=0.194  Sum_probs=83.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeC-ChHHHHHHHHHH-----HHcCCC-----ceEEEEccCCCCc-----
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY-SEDAINLAQSLA-----NRDGFS-----CIKFLVDDVLDTK-----  226 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~-s~~~i~~a~~~~-----~~~~~~-----~i~~~~~D~~~~~-----  226 (343)
                      .++.+|||+|||+|.++..++..|..+|+|+|+ |+.+++.+++++     ..+++.     ++++...|..+..     
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            457799999999999999999987668999999 899999999999     555543     6888877765531     


Q ss_pred             --cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccC---C--CcEEEEEecC
Q 019324          227 --LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVA---P--GGLLVITSCN  276 (343)
Q Consensus       227 --~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lk---p--gG~lii~~~~  276 (343)
                        ..++||+|++..++.+.       .....+++.+.++|+   |  ||++++....
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~-------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~  207 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFH-------QAHDALLRSVKMLLALPANDPTAVALVTFTH  207 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCG-------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred             hccCCCCCEEEEeCcccCh-------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence              24789999997777654       456778899999999   9  9988775444

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.48  E-value=9.3e-14  Score=135.58  Aligned_cols=105  Identities=19%  Similarity=0.256  Sum_probs=89.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|++++..+++ ++++++++|+.+..++++||+|+++.++.
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  235 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchH
Confidence            45789999999999999999998766999999999 99999999999888 58999999999876667999999987766


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ++.     .......+..+.++|||||++++.
T Consensus       236 ~~~-----~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          236 MLF-----NERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             HHT-----CHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             hcC-----cHHHHHHHHHHHHhcCCCCEEEEE
Confidence            552     134455677899999999999863

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.48  E-value=1.7e-13  Score=115.40  Aligned_cols=113  Identities=18%  Similarity=0.190  Sum_probs=85.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.+  +|+|+|+|+.|++.         ..+++++++|+.+...+++||+|+++.++..
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLLCSINQESVDVVVFNPPYVP   90 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECSTTTTBCGGGCSEEEECCCCBT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECChhhhcccCCCCEEEECCCCcc
Confidence            456799999999999999999987  89999999999988         1478999999988544589999999987764


Q ss_pred             cccC--CCChhhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHHHHH
Q 019324          243 IGLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS  287 (343)
Q Consensus       243 i~~~--~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~~~~  287 (343)
                      ..-.  .........+++++.+.| |||++++..... ...++.+.++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~  137 (170)
T 3q87_B           91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLE  137 (170)
T ss_dssp             TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHH
T ss_pred             CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHH
Confidence            3210  001112235678888888 999999976543 4455555554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.47  E-value=9.7e-14  Score=130.01  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=92.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++..++. +++++.+|+.... +++||+|+++.+++
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Iv~~~~~~  272 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEV-KGRFDMIISNPPFH  272 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTC-CSCEEEEEECCCCC
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccc-cCCeeEEEECCCcc
Confidence            3467999999999999999998854 3899999999999999999988876 5788999998754 67899999998886


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +..  .........+++++.++|||||.+++......
T Consensus       273 ~g~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  307 (343)
T 2pjd_A          273 DGM--QTSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (343)
T ss_dssp             SSS--HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred             cCc--cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence            421  01124567899999999999999999876554

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.47  E-value=1.9e-13  Score=128.46  Aligned_cols=117  Identities=21%  Similarity=0.188  Sum_probs=93.4

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEEC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK  237 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~  237 (343)
                      ...++.+|||+|||+|.++..++..+  ..+++|+|+|+.+++.|++|+...+++++++.++|+.+.+. ...||+|+++
T Consensus       200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~n  279 (354)
T 3tma_A          200 DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILAN  279 (354)
T ss_dssp             TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEEC
T ss_pred             CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEEC
Confidence            34678899999999999999999863  24899999999999999999999998789999999998764 4678999998


Q ss_pred             ccccccccCCCC-hhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIGLHPDG-PLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~~~~~~-~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .++......... ......+++.+.++|||||.+++.+++.
T Consensus       280 pPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          280 PPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             CCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             CCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            876432100000 1123578899999999999999988753

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.47  E-value=5.7e-13  Score=117.07  Aligned_cols=116  Identities=15%  Similarity=0.100  Sum_probs=94.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCC-CccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLER-QFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~-~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..++..+. .+|+|+|+++.+++.|++|+..+++. ++++.++|+.+...++ .||+|+..+.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            5678999999999999999999863 48999999999999999999999985 5999999998865443 7999875443


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                      -.         .....++....+.|+++|+|+++. +.....+.+.+..
T Consensus       100 Gg---------~lI~~IL~~~~~~l~~~~~lIlqp-~~~~~~lr~~L~~  138 (230)
T 3lec_A          100 GG---------RLIADILNNDIDKLQHVKTLVLQP-NNREDDLRKWLAA  138 (230)
T ss_dssp             CH---------HHHHHHHHHTGGGGTTCCEEEEEE-SSCHHHHHHHHHH
T ss_pred             ch---------HHHHHHHHHHHHHhCcCCEEEEEC-CCChHHHHHHHHH
Confidence            21         234567899999999999888775 4556677776664

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.47  E-value=3.9e-13  Score=122.01  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=87.1

Q ss_pred             CCCeEEEEccCc---cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----------cC
Q 019324          164 SSWSVLDIGTGN---GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE  228 (343)
Q Consensus       164 ~~~~VLDiGcG~---G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----------~~  228 (343)
                      ...+|||||||+   |.++..+.+. +..+|+++|+|+.|++.+++++...  .+++++++|+.+..           ++
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--PNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--TTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--CCeEEEEeeCCCchhhhccchhhccCC
Confidence            357999999999   9888776654 2248999999999999999987532  48999999997631           11


Q ss_pred             -CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          229 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       229 -~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                       .+||+|++..+++++.   +  .....+++++.++|+|||+|++......
T Consensus       155 ~~~~d~v~~~~vlh~~~---d--~~~~~~l~~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLS---P--DVVDRVVGAYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             TTSCCEEEETTTGGGSC---T--TTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred             CCCCEEEEEechhhhCC---c--HHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence             4899999999999883   1  1466789999999999999999876653

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.47  E-value=1.3e-13  Score=124.94  Aligned_cols=104  Identities=16%  Similarity=0.263  Sum_probs=82.3

Q ss_pred             CCeEEEEccCccH----HHHHHHhc-C----CCcEEEEeCChHHHHHHHHHHHH-----------------------cC-
Q 019324          165 SWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANR-----------------------DG-  211 (343)
Q Consensus       165 ~~~VLDiGcG~G~----~~~~la~~-g----~~~v~gvD~s~~~i~~a~~~~~~-----------------------~~-  211 (343)
                      +.+|||+|||+|.    +++.|++. +    ..+|+|+|+|+.|++.|+++...                       .+ 
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            5699999999998    66666664 3    12899999999999999986410                       01 


Q ss_pred             --C-----CceEEEEccCCCCcc--CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          212 --F-----SCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       212 --~-----~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                        +     .+|.|.+.|+.+.++  .++||+|+|.+++.++.     +....+++++++++|+|||+|++.
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-----~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-----KTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-----HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-----HHHHHHHHHHHHHHhCCCcEEEEE
Confidence              0     269999999998543  47899999999987772     345578899999999999999984

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.47  E-value=5.6e-13  Score=127.73  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=85.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHH-------HHHHHHcC--CCceEEEEccCCCC--c---c
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLA-------QSLANRDG--FSCIKFLVDDVLDT--K---L  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a-------~~~~~~~~--~~~i~~~~~D~~~~--~---~  227 (343)
                      .++.+|||||||+|.++..+++. |..+|+|+|+++.+++.|       ++++...|  ..+++++++|....  .   .
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~  320 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  320 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence            67889999999999999999986 655899999999999999       88888888  46899999865432  1   1


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .++||+|+++.++ +.       .+....++++.++|||||++++..
T Consensus       321 ~~~FDvIvvn~~l-~~-------~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          321 IPQCDVILVNNFL-FD-------EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             GGGCSEEEECCTT-CC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cCCCCEEEEeCcc-cc-------ccHHHHHHHHHHhCCCCeEEEEee
Confidence            4689999987655 21       355567899999999999999863

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.47  E-value=2.8e-13  Score=125.98  Aligned_cols=110  Identities=15%  Similarity=0.276  Sum_probs=93.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++. +..+++++|++ .+++.++++....++. ++++..+|+.+.+.+..||+|++..++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            45789999999999999999987 22489999999 9999999998887764 699999999886665569999999998


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +++.     ......+++++.++|+|||++++......
T Consensus       243 ~~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          243 HHFD-----VATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             ccCC-----HHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            8762     34567899999999999999998766543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.47  E-value=1.3e-12  Score=123.53  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=90.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++...++ ++++|..+|+.+ +.+..||+|++..++
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~~~D~v~~~~vl  278 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPDGADVYLIKHVL  278 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCSSCSEEEEESCG
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCCCceEEEhhhhh
Confidence            457899999999999999999873 238999999 9999999999988776 579999999984 344489999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++.     ......++++++++|||||++++.....
T Consensus       279 h~~~-----d~~~~~~L~~~~~~L~pgG~l~i~e~~~  310 (369)
T 3gwz_A          279 HDWD-----DDDVVRILRRIATAMKPDSRLLVIDNLI  310 (369)
T ss_dssp             GGSC-----HHHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred             ccCC-----HHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            7762     3445578999999999999999965433

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.47  E-value=2.8e-13  Score=120.80  Aligned_cols=115  Identities=15%  Similarity=0.130  Sum_probs=84.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHc--------CCCceEEEEccCCCC-c--c-CC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRD--------GFSCIKFLVDDVLDT-K--L-ER  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~--------~~~~i~~~~~D~~~~-~--~-~~  229 (343)
                      .++.+|||||||+|.++..++..+. ..|+|+|+|+.+++.+++++..+        +++++.++++|+.+. +  + .+
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            4577999999999999999999853 37999999999999999998776        667899999999873 3  2 56


Q ss_pred             CccEEEECccccccc-cCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          230 QFQLVMDKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~-~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .+|.|+....-.+.. .+.........++.++.++|+|||++++.+...
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~  176 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK  176 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH
Confidence            889888542111100 000000001368899999999999999976554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.46  E-value=1.5e-13  Score=139.87  Aligned_cols=129  Identities=14%  Similarity=0.133  Sum_probs=98.3

Q ss_pred             hhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc--cCCCccEE
Q 019324          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--LERQFQLV  234 (343)
Q Consensus       159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~--~~~~fD~V  234 (343)
                      +....++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++|+..+++.  +++++++|+.+..  ..++||+|
T Consensus       534 l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~I  613 (703)
T 3v97_A          534 LGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLI  613 (703)
T ss_dssp             HHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             HHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEE
Confidence            3334578899999999999999999988767999999999999999999999985  7999999998742  25789999


Q ss_pred             EECcccccccc----CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          235 MDKGTLDAIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       235 ~~~~~l~~i~~----~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      +++...-.-.-    ..........++..+.++|+|||+++++++........+.+.
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~  670 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLA  670 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHH
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHH
Confidence            99764311000    001124556788999999999999998877744333333343

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.46  E-value=5.6e-13  Score=118.05  Aligned_cols=116  Identities=14%  Similarity=0.043  Sum_probs=94.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCC-CccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLER-QFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~-~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+++.+++.|++|+..+++. ++++.++|+.+...++ +||+|+..+.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            5678999999999999999999863 48999999999999999999999985 5999999998865544 5999886433


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                      -.         .....++....+.|+++|+|+++. +.....+.+.+..
T Consensus       100 Gg---------~lI~~IL~~~~~~L~~~~~lIlq~-~~~~~~lr~~L~~  138 (244)
T 3gnl_A          100 GG---------TLIRTILEEGAAKLAGVTKLILQP-NIAAWQLREWSEQ  138 (244)
T ss_dssp             CH---------HHHHHHHHHTGGGGTTCCEEEEEE-SSCHHHHHHHHHH
T ss_pred             ch---------HHHHHHHHHHHHHhCCCCEEEEEc-CCChHHHHHHHHH
Confidence            21         334577899999999999988875 4556667666664

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.46  E-value=1.2e-12  Score=122.68  Aligned_cols=114  Identities=21%  Similarity=0.227  Sum_probs=90.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC------CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF------SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~------~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++...      .+++|+|+++.+++.|+.++...++ ++.+.++|.......+.||+|++
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccccCCccEEEE
Confidence            3567999999999999999887621      4799999999999999999988887 78999999887655678999999


Q ss_pred             Ccccccccc-------C---CCChh-hHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          237 KGTLDAIGL-------H---PDGPL-KRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       237 ~~~l~~i~~-------~---~~~~~-~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +.++.++.-       .   ..+.. ....++..+.+.|+|||++++..++.
T Consensus       208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            998765410       0   00111 11357899999999999999987543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.46  E-value=1.4e-13  Score=124.71  Aligned_cols=102  Identities=10%  Similarity=0.038  Sum_probs=88.3

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      ..++.+|||+|||+|.+++.++..|..+|+++|+|+.+++.+++|++.+++. +++++++|+.++...+.||.|+++...
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~  202 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence            3678999999999999999999998779999999999999999999999985 599999999998777899999986443


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ..           ..+|..+.++|||||++.+..
T Consensus       203 ~~-----------~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          203 RT-----------HEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             SG-----------GGGHHHHHHHEEEEEEEEEEE
T ss_pred             cH-----------HHHHHHHHHHcCCCCEEEEEe
Confidence            22           246788899999999987643

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.46  E-value=3.8e-13  Score=118.80  Aligned_cols=102  Identities=18%  Similarity=0.207  Sum_probs=82.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++. | ..+|+|+|+|+.+++.+.+++..+  +++.++++|+.+..    .+++||+|++
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            56789999999999999999987 3 348999999999998888877765  48999999998842    2578999998


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +..         .+.....++.++.++|||||++++...
T Consensus       154 ~~~---------~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          154 DVA---------QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             CCC---------CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCC---------CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            543         123444567899999999999999544

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.46  E-value=2e-13  Score=130.31  Aligned_cols=121  Identities=18%  Similarity=0.185  Sum_probs=96.0

Q ss_pred             hhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-C-ceEEEEccCCCCcc-----CCCc
Q 019324          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-S-CIKFLVDDVLDTKL-----ERQF  231 (343)
Q Consensus       159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~-~i~~~~~D~~~~~~-----~~~f  231 (343)
                      +....++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.|++|+..+++ + +++++++|+.+...     ..+|
T Consensus       215 l~~~~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~f  294 (396)
T 3c0k_A          215 TRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_dssp             HHHHCTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHhhCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence            334467889999999999999999998766999999999999999999999998 6 89999999887532     4689


Q ss_pred             cEEEECcccccccc--CCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          232 QLVMDKGTLDAIGL--HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       232 D~V~~~~~l~~i~~--~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      |+|+++.+.....-  ..........++..+.++|+|||+++++++....
T Consensus       295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  344 (396)
T 3c0k_A          295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLM  344 (396)
T ss_dssp             EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTC
T ss_pred             CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence            99999765321100  0011134567889999999999999998877654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.45  E-value=4.4e-13  Score=125.68  Aligned_cols=106  Identities=19%  Similarity=0.266  Sum_probs=91.6

Q ss_pred             CCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~~~l  240 (343)
                      +.+|||||||+|.++..+++.. ..+++++|+ +.+++.++++....++ .+++++.+|+.+..  .++.||+|++..++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            7899999999999999999873 348999999 8899999999888776 36999999999876  66789999999998


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++.     ......+++++.++|||||++++....
T Consensus       259 h~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          259 HYFD-----AREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             GGSC-----HHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccCC-----HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            8762     345678999999999999999997643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.45  E-value=5.2e-13  Score=126.20  Aligned_cols=106  Identities=19%  Similarity=0.223  Sum_probs=90.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++...++. +++++++|+.+. .+..||+|++..++
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~D~v~~~~vl  258 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LPVTADVVLLSFVL  258 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc-CCCCCCEEEEeccc
Confidence            567899999999999999999873 238999999 99999999999888774 799999999863 34459999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +++.     ......+++++.++|||||++++...
T Consensus       259 ~~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          259 LNWS-----DEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCC-----HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            8762     23445789999999999999998766

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.45  E-value=2e-13  Score=131.87  Aligned_cols=128  Identities=17%  Similarity=0.158  Sum_probs=99.8

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEEC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDK  237 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~  237 (343)
                      ..++.+|||+|||+|..+..+++.  +...|+|+|+|+.+++.+++|+...|+.++.++++|+....  .++.||+|+++
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            367889999999999999999876  33489999999999999999999999988999999988764  36789999987


Q ss_pred             ccccccccCCCCh---------------hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          238 GTLDAIGLHPDGP---------------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       238 ~~l~~i~~~~~~~---------------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                      ........-...+               .....++.++.++|||||+|++++|....++....+..|
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~  249 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWL  249 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHH
Confidence            6543222111111               112367899999999999999999988776655555433

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.45  E-value=1.5e-13  Score=131.24  Aligned_cols=119  Identities=24%  Similarity=0.284  Sum_probs=95.3

Q ss_pred             hhccC-CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-----CCCc
Q 019324          159 NDKYL-SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----ERQF  231 (343)
Q Consensus       159 l~~~~-~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-----~~~f  231 (343)
                      +.... ++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.|++++..+++. +++++++|+.+...     .++|
T Consensus       211 ~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~f  290 (396)
T 2as0_A          211 LEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF  290 (396)
T ss_dssp             HGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCC
Confidence            33444 78899999999999999999987669999999999999999999999986 89999999877532     4689


Q ss_pred             cEEEECccccccccCCCC----hhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          232 QLVMDKGTLDAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~----~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      |+|+++......  +...    ......++..+.++|+|||++++++++...
T Consensus       291 D~Vi~dpP~~~~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~  340 (396)
T 2as0_A          291 DIVVLDPPAFVQ--HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV  340 (396)
T ss_dssp             EEEEECCCCSCS--SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred             CEEEECCCCCCC--CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCC
Confidence            999997543211  0000    134557889999999999999998887654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.45  E-value=2e-13  Score=121.98  Aligned_cols=104  Identities=15%  Similarity=0.268  Sum_probs=86.0

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--c------CC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--L------ER  229 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~------~~  229 (343)
                      ...++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|++++...++ .+++++++|+.+..  +      .+
T Consensus        76 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~  155 (247)
T 1sui_A           76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG  155 (247)
T ss_dssp             HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred             HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence            3456789999999999999999986 2 24899999999999999999998887 47999999987642  2      47


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +||+|++....          .....+++.+.++|||||++++..
T Consensus       156 ~fD~V~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          156 SYDFIFVDADK----------DNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             CBSEEEECSCS----------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             CEEEEEEcCch----------HHHHHHHHHHHHhCCCCeEEEEec
Confidence            89999986432          234568899999999999999864

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.44  E-value=3.3e-14  Score=124.16  Aligned_cols=104  Identities=13%  Similarity=0.130  Sum_probs=78.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHH----HHHHcCCCceEEEEccCCCCccC-CCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQS----LANRDGFSCIKFLVDDVLDTKLE-RQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~----~~~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.+.+    +....+.+++.++++|+.+.+.. +. |.|+.
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~  104 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV  104 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence            567899999999999999999983 3489999999998886433    33345667899999999997764 44 77663


Q ss_pred             Ccccc-----ccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          237 KGTLD-----AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       237 ~~~l~-----~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .....     ++       .+...+++++.++|||||++++..
T Consensus       105 ~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          105 LMPWGSLLRGVL-------GSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             ESCCHHHHHHHH-------TSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             Eccchhhhhhhh-------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence            22111     22       122467899999999999999964

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.44  E-value=5e-13  Score=117.43  Aligned_cols=101  Identities=17%  Similarity=0.304  Sum_probs=82.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++. |. .+|+|+|+|+.+++.+++++...  ++++++++|+.+..    ..++||+|++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            56789999999999999999977 42 48999999999999999988755  58999999998732    3568999997


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ..+         .+.....++.++.++|||||++++..
T Consensus       150 ~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          150 DVA---------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             CCC---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCC---------CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            643         11233455899999999999999873

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.44  E-value=6.8e-14  Score=123.32  Aligned_cols=110  Identities=13%  Similarity=0.116  Sum_probs=78.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCC-hHHHHHH---HHHHHHcCCCceEEEEccCCCCcc--CCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYS-EDAINLA---QSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s-~~~i~~a---~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~  235 (343)
                      .++.+|||||||+|.++..+++. ...+|+|+|+| +.|++.|   ++++...+++++.+.++|+..++.  ...+|.|.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            56789999999999999999964 22389999999 7777776   888877888889999999988742  23445454


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ++........+.  ......+++++.++|||||++++..
T Consensus       103 ~~~~~~~~~~~~--~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A          103 ILFPWGTLLEYV--IKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             EESCCHHHHHHH--HTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EeCCCcHHhhhh--hcchHHHHHHHHHhcCCCcEEEEEE
Confidence            433221110000  0011357899999999999999943

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.44  E-value=4.8e-14  Score=125.67  Aligned_cols=105  Identities=24%  Similarity=0.286  Sum_probs=87.2

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-------CCC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-------ERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-------~~~  230 (343)
                      ...++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|++++...++. +++++++|+.+...       .++
T Consensus        57 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~  136 (242)
T 3r3h_A           57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQ  136 (242)
T ss_dssp             HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred             hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence            3356789999999999999999985 2 348999999999999999999998874 89999999876422       478


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ||+|++....          .....+++++.++|||||++++...
T Consensus       137 fD~V~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          137 FDFIFIDADK----------TNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             EEEEEEESCG----------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             EeEEEEcCCh----------HHhHHHHHHHHHhcCCCeEEEEECC
Confidence            9999986542          3445688999999999999999644

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.43  E-value=2.7e-13  Score=119.64  Aligned_cols=104  Identities=20%  Similarity=0.306  Sum_probs=87.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc--c--CCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--L--ERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~--~--~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++...++. ++.++++|+.+..  .  +++||+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            467899999999999999999872 348999999999999999999988874 6999999998752  2  478999998


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      .....          ....+++.+.++|+|||++++....
T Consensus       133 ~~~~~----------~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          133 DAAKG----------QYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             EGGGS----------CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             CCCHH----------HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            76542          3456789999999999999997543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.43  E-value=1.9e-13  Score=118.67  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCC-c-cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT-K-LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~-~-~~~~fD~V~~~  237 (343)
                      .++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|++++...++. +++++++|+.+. + .++ ||+|++.
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~  133 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD  133 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence            45789999999999999999987 2 348999999999999999999887764 699999998764 2 345 9999986


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ...          .....+++++.++|||||++++....+
T Consensus       134 ~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~~~  163 (210)
T 3c3p_A          134 CDV----------FNGADVLERMNRCLAKNALLIAVNALR  163 (210)
T ss_dssp             TTT----------SCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred             CCh----------hhhHHHHHHHHHhcCCCeEEEEECccc
Confidence            321          234568899999999999999865433

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.43  E-value=1.4e-12  Score=122.75  Aligned_cols=107  Identities=18%  Similarity=0.159  Sum_probs=90.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++...+++ +++++.+|+.+.+.+. +|+|++..++
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~D~v~~~~vl  266 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCRIL  266 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-CSEEEEESCG
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-CCEEEEechh
Confidence            567899999999999999999873 238999999 99999999999887765 5999999999875543 4999999998


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++.     ......+++++.++|||||++++....
T Consensus       267 h~~~-----d~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          267 YSAN-----EQLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             GGSC-----HHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             ccCC-----HHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            8772     244778999999999999999886643

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.43  E-value=2.5e-13  Score=131.36  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=98.8

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEEC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDK  237 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~  237 (343)
                      ..++.+|||+|||+|..+..+++.  +...|+|+|+|+.+++.+++|+...|+. +.++++|+.+..  .+++||+|+++
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence            367889999999999999999976  2248999999999999999999999987 999999988765  36789999986


Q ss_pred             ccccccc---cCCCCh------------hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          238 GTLDAIG---LHPDGP------------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       238 ~~l~~i~---~~~~~~------------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                      .......   .+++..            .....+++++.++|||||+|++++|....++....+..|
T Consensus       178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~  244 (464)
T 3m6w_A          178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHF  244 (464)
T ss_dssp             CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred             CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHH
Confidence            5432221   122211            112578899999999999999999988766655555444

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.43  E-value=9.4e-13  Score=123.83  Aligned_cols=107  Identities=18%  Similarity=0.301  Sum_probs=90.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++... .+++++|+ +.+++.+++++...++. +++++.+|+.+. .+..||+|++..++
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~D~v~~~~vl  259 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LPRKADAIILSFVL  259 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSSCEEEEEEESCG
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC-CCCCccEEEEcccc
Confidence            5678999999999999999998742 38999999 99999999999888774 799999999863 34459999999998


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++.     ......+++++.++|||||++++....
T Consensus       260 ~~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          260 LNWP-----DHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             GGSC-----HHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCC-----HHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            8762     234467899999999999999997665

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.42  E-value=5.2e-13  Score=124.67  Aligned_cols=111  Identities=17%  Similarity=0.145  Sum_probs=92.0

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      ..++.+|||+|||+|.++.. +. +..+|+|+|+|+.+++.+++|+..+++ .+++++++|+.+..  ++||+|+++...
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~  268 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPK  268 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTT
T ss_pred             cCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcH
Confidence            35788999999999999999 87 556999999999999999999999998 57999999998875  789999986432


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      ..           ..++..+.++|+|||++++.++........+.+.
T Consensus       269 ~~-----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~  304 (336)
T 2yx1_A          269 FA-----------HKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFE  304 (336)
T ss_dssp             TG-----------GGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHH
T ss_pred             hH-----------HHHHHHHHHHcCCCCEEEEEEeecCchHHHHHHH
Confidence            21           1567899999999999999877766454555444

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.42  E-value=1.3e-12  Score=126.63  Aligned_cols=129  Identities=20%  Similarity=0.270  Sum_probs=99.0

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cC-CCccEEE
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQLVM  235 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~-~~fD~V~  235 (343)
                      ...++.+|||+|||+|..+..+++.  +...|+|+|+|+.+++.+++++...|++++.++++|+.+..  +. ++||+|+
T Consensus       256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl  335 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVL  335 (450)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEE
Confidence            3467889999999999999999985  22489999999999999999999999888999999998875  33 6899999


Q ss_pred             ECcccccccc---CCCC-----hhh-------HHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          236 DKGTLDAIGL---HPDG-----PLK-------RIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       236 ~~~~l~~i~~---~~~~-----~~~-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                      ++........   +|+.     +.+       ...+++++.++|||||++++++|.....+....+..|
T Consensus       336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~  404 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWF  404 (450)
T ss_dssp             EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred             EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHH
Confidence            8644322211   1211     011       1467899999999999999999988766544444433

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.42  E-value=4.6e-13  Score=119.64  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=86.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHc-CCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~-~~~~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.+++++... +.+++++.++|+.+.++ +++||+|+++.
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~  174 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDL  174 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEES
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECC
Confidence            67889999999999999999987 4 359999999999999999999877 66689999999988744 47899999832


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .            ....+++++.++|+|||++++..++.
T Consensus       175 ~------------~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          175 M------------EPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             S------------CGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             c------------CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            1            12256799999999999999988765

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.42  E-value=3e-12  Score=123.47  Aligned_cols=127  Identities=19%  Similarity=0.229  Sum_probs=98.1

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--c-CCCccEEEEC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDK  237 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~-~~~fD~V~~~  237 (343)
                      ..++.+|||+|||+|..+..+++.+. .+|+|+|+|+.+++.+++++...++ ++.++++|+.+..  . +++||+|+++
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D  322 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQFDRILLD  322 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccCCCCEEEEe
Confidence            36788999999999999999998742 4899999999999999999999887 6899999998875  2 3689999986


Q ss_pred             cccccccc---CCCC-----hhh-------HHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          238 GTLDAIGL---HPDG-----PLK-------RIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       238 ~~l~~i~~---~~~~-----~~~-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                      ........   +++.     ..+       ...+++++.++|||||++++++|.....+....+..|
T Consensus       323 ~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~  389 (429)
T 1sqg_A          323 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAF  389 (429)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred             CCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHH
Confidence            54332211   1210     011       1478899999999999999999988766555545444

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.42  E-value=2.5e-13  Score=129.09  Aligned_cols=118  Identities=21%  Similarity=0.235  Sum_probs=94.3

Q ss_pred             hhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCcc
Q 019324          158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQ  232 (343)
Q Consensus       158 ~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD  232 (343)
                      .+... ++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++|+..+++++++++++|+.+...     ..+||
T Consensus       204 ~~~~~-~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD  281 (382)
T 1wxx_A          204 YMERF-RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFD  281 (382)
T ss_dssp             HGGGC-CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HHHhc-CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCee
Confidence            34444 6789999999999999999988 45899999999999999999999998789999999987532     56899


Q ss_pred             EEEECccccccccCCCC----hhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          233 LVMDKGTLDAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~----~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      +|+++......  +...    ......++..+.++|+|||+++++++....
T Consensus       282 ~Ii~dpP~~~~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  330 (382)
T 1wxx_A          282 LVVLDPPAFAK--GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM  330 (382)
T ss_dssp             EEEECCCCSCC--STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             EEEECCCCCCC--ChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence            99997543111  1111    134456889999999999999998887654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.41  E-value=7.3e-13  Score=125.99  Aligned_cols=121  Identities=21%  Similarity=0.240  Sum_probs=91.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..++..|.. |+|+|+|+.+++.+++|+..+++. ..+.++|+.+..  ..+.||+|+++...
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHHVLLDPPT  290 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred             cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence            34899999999999999999999874 999999999999999999999874 467799987753  23459999997653


Q ss_pred             cccccCCCC----hhhHHHHHHHHhhccCCCcEEEEEecCCC--hHHHHHHHH
Q 019324          241 DAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNST--KDELVHEVS  287 (343)
Q Consensus       241 ~~i~~~~~~----~~~~~~~l~~~~~~LkpgG~lii~~~~~~--~~~~~~~~~  287 (343)
                      -.-  +...    ......++..+.++|+|||++++.+++..  ...+.+.+.
T Consensus       291 f~~--~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~  341 (393)
T 4dmg_A          291 LVK--RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVAR  341 (393)
T ss_dssp             CCS--SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCC--CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            110  0000    12345788899999999999998887765  334444443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.41  E-value=5.5e-13  Score=120.13  Aligned_cols=97  Identities=20%  Similarity=0.267  Sum_probs=81.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++.     +++.+.++|+...+. +++||+|++..+.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCceeEEEEeCCh
Confidence            35779999999999999999987 2248999999999999999864     478999999988764 5789999986553


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      .              .++++.++|||||++++..++..
T Consensus       159 ~--------------~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          159 C--------------KAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             C--------------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred             h--------------hHHHHHHhcCCCcEEEEEEcCHH
Confidence            2              35899999999999999887764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.41  E-value=2.7e-13  Score=120.30  Aligned_cols=103  Identities=21%  Similarity=0.272  Sum_probs=85.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL------------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~------------  227 (343)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|++++...++. ++.++++|+.+...            
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            56789999999999999999987 2 348999999999999999999888875 49999999865311            


Q ss_pred             -----C-CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          228 -----E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       228 -----~-~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                           + ++||+|++....          .....+++.+.++|+|||++++...
T Consensus       139 ~~f~~~~~~fD~I~~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDADK----------ENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             TTTCCSTTCEEEEEECSCG----------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccccCCCCCcCEEEEeCCH----------HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence                 2 689999987543          2344678999999999999999754

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.41  E-value=2.3e-12  Score=122.07  Aligned_cols=105  Identities=12%  Similarity=0.088  Sum_probs=87.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-Ccc--CCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKL--ERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-~~~--~~~fD~V~~~~  238 (343)
                      .++.+|||+| |+|.++..++..+. .+|+|+|+|+.+++.|++++..+|+.+++++++|+.+ ++.  +++||+|+++.
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            3578999999 99999999998865 5899999999999999999998887789999999988 442  46899999987


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcE-EEEEecC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGL-LVITSCN  276 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~-lii~~~~  276 (343)
                      ++...        ....+++++.++|||||+ ++++...
T Consensus       250 p~~~~--------~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          250 PETLE--------AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CSSHH--------HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             CCchH--------HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            65433        246788999999999994 4555554

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.41  E-value=7.7e-14  Score=133.94  Aligned_cols=103  Identities=20%  Similarity=0.254  Sum_probs=82.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCce--EEEEccCCCCcc-CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI--KFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i--~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++    +.+..  .+...+...++. +++||+|++..+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v  180 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANT  180 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECCh
Confidence            4578999999999999999999976 899999999999999875    22211  122233333222 579999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++|+       .+...+++++.++|||||++++..++.
T Consensus       181 l~h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~  211 (416)
T 4e2x_A          181 LCHI-------PYVQSVLEGVDALLAPDGVFVFEDPYL  211 (416)
T ss_dssp             GGGC-------TTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             HHhc-------CCHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            9998       467789999999999999999987653

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.41  E-value=8.6e-13  Score=121.04  Aligned_cols=112  Identities=15%  Similarity=0.208  Sum_probs=83.5

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHH--cC--CCceEEEEccCCCCc--cCCCccEEEE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DG--FSCIKFLVDDVLDTK--LERQFQLVMD  236 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~--~~--~~~i~~~~~D~~~~~--~~~~fD~V~~  236 (343)
                      .+.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++..  .+  .++++++++|+.+..  .+++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            4679999999999999999988 456999999999999999998754  12  258999999987642  2578999998


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +.....+  .+........+++++.++|||||++++..++.
T Consensus       170 d~~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  208 (296)
T 1inl_A          170 DSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETEDP  208 (296)
T ss_dssp             EC------------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             cCCCccc--CchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence            6432112  11111122578899999999999999986553

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.41  E-value=5.8e-13  Score=129.82  Aligned_cols=118  Identities=19%  Similarity=0.309  Sum_probs=93.5

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECcc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT  239 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~  239 (343)
                      ++.+|||+|||+|..+..+++. + ...|+|+|+|+.+++.+++|+...|+.++.++++|+....  .++.||+|+++..
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            7889999999999999999986 2 2489999999999999999999999888999999998865  3578999998644


Q ss_pred             ccc---cccCCCC-----h-------hhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          240 LDA---IGLHPDG-----P-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       240 l~~---i~~~~~~-----~-------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      ...   +..+++.     +       .....+++++.++|||||++++++|.....+
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~E  253 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEE  253 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTT
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCccc
Confidence            322   2112221     1       1124678999999999999999998765443

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.40  E-value=5.6e-13  Score=118.32  Aligned_cols=105  Identities=19%  Similarity=0.336  Sum_probs=86.8

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc--c------CC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--L------ER  229 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~--~------~~  229 (343)
                      ...++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|++++...++. +++++++|+.+..  .      .+
T Consensus        67 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~  146 (237)
T 3c3y_A           67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG  146 (237)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred             HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence            3466789999999999999999986 2 348999999999999999999988874 6999999987642  2      47


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +||+|++....          .....+++.+.++|+|||++++...
T Consensus       147 ~fD~I~~d~~~----------~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          147 SYDFGFVDADK----------PNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             CEEEEEECSCG----------GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CcCEEEECCch----------HHHHHHHHHHHHhcCCCeEEEEecC
Confidence            89999976432          3445788999999999999998654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.40  E-value=4.9e-13  Score=118.25  Aligned_cols=105  Identities=21%  Similarity=0.266  Sum_probs=85.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc----c-C--CCcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK----L-E--RQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~----~-~--~~fD  232 (343)
                      .++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|++++...++. +++++++|+.+..    . +  ++||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            56789999999999999999986 2 248999999999999999999888874 6999999976531    1 2  7899


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +|++....          .....+++++.++|+|||++++....+
T Consensus       151 ~V~~d~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          151 LIFIDADK----------RNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             EEEECSCG----------GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             EEEECCCH----------HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            99986542          344568899999999999999975543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.40  E-value=2.2e-12  Score=113.83  Aligned_cols=101  Identities=15%  Similarity=0.141  Sum_probs=78.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++. + ...|+|+|+|+.|++.+.+.+...  .|+.++++|+....    ..++||+|++
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~~  152 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLYV  152 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEEe
Confidence            67899999999999999999886 3 348999999999986665554433  48999999998643    2468999998


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +...         +.....+...+.++|||||+|+++.
T Consensus       153 d~a~---------~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          153 DIAQ---------PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             CCCC---------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCC---------hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            7543         1233345567777999999999873

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.40  E-value=2.7e-12  Score=113.93  Aligned_cols=102  Identities=23%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc-cCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~-~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++. ..+|+++|+++.+++.++++....++ +++++..+|+.+.. .++.||+|+++.. 
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-  167 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR-  167 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS-
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc-
Confidence            56789999999999999999988 45999999999999999999988887 58999999998865 4578999998422 


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                                 ....+++++.++|+|||++++..++.
T Consensus       168 -----------~~~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          168 -----------EPWHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             -----------CGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             -----------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence                       12245799999999999999988764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.40  E-value=2.4e-13  Score=135.62  Aligned_cols=108  Identities=23%  Similarity=0.332  Sum_probs=87.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~  239 (343)
                      .++.+|||||||.|.++..|++.|+ .|+|+|.|+.+|+.|+.++...|..+++|.++++.++.   .+++||+|+|..+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            4578999999999999999999997 89999999999999999998887558999999998762   2578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++|+. +    ......+..+.+.|+++|..++....
T Consensus       144 ~ehv~-~----~~~~~~~~~~~~tl~~~~~~~~~~~~  175 (569)
T 4azs_A          144 FHHIV-H----LHGIDEVKRLLSRLADVTQAVILELA  175 (569)
T ss_dssp             HHHHH-H----HHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred             hhcCC-C----HHHHHHHHHHHHHhccccceeeEEec
Confidence            99993 1    11123345677778888776665443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.39  E-value=5.7e-13  Score=111.35  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=84.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------c-CCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-ERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~-~~~f  231 (343)
                      .++.+|||+|||+|.++..+++. |. .+++|+|+|+ +++.          .++++.++|+.+.+        . +++|
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence            56789999999999999999987 43 5999999999 6532          47999999998864        3 4789


Q ss_pred             cEEEECccccccccCCCChhh------HHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          232 QLVMDKGTLDAIGLHPDGPLK------RIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~------~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                      |+|+++.++++....  ....      ...+++++.++|+|||.+++..+... ...+...+.
T Consensus        90 D~i~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~  150 (180)
T 1ej0_A           90 QVVMSDMAPNMSGTP--AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIR  150 (180)
T ss_dssp             EEEEECCCCCCCSCH--HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHH
T ss_pred             eEEEECCCccccCCC--ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHH
Confidence            999998887655210  0011      15788999999999999999766554 344444444

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.39  E-value=1.4e-12  Score=120.08  Aligned_cols=112  Identities=19%  Similarity=0.198  Sum_probs=84.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHH----cCCCceEEEEccCCCCc---cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR----DGFSCIKFLVDDVLDTK---LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~----~~~~~i~~~~~D~~~~~---~~~~fD~V  234 (343)
                      .++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++..    ...++++++++|+.+..   .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            34679999999999999999987 345899999999999999998742    12258999999987754   25789999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++.+....   +........+++++.++|||||++++...+.
T Consensus       174 i~d~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          174 IIDTTDPAG---PASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             EEECC------------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EECCCCccc---cchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            996544221   1111111468899999999999999976553

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.39  E-value=1.1e-12  Score=122.11  Aligned_cols=104  Identities=13%  Similarity=0.177  Sum_probs=88.0

Q ss_pred             CeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccccc
Q 019324          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  243 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i  243 (343)
                      .+|||+|||+|.++..+++. +..+++++|+ +.+++.+++++...++ ++++++.+|+.+ +.++.||+|++..+++++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v~~~~vl~~~  246 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSNGDIYLLSRIIGDL  246 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSSCSEEEEESCGGGC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCCCCEEEEchhccCC
Confidence            89999999999999999987 2348999999 9999999998876554 479999999988 455789999999998766


Q ss_pred             ccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          244 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       244 ~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      .     ......+++++.++|||||++++....
T Consensus       247 ~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          247 D-----EAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             C-----HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             C-----HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            2     345568899999999999999997653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.39  E-value=1.5e-12  Score=112.12  Aligned_cols=110  Identities=23%  Similarity=0.270  Sum_probs=80.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.+++++.     +++++++|+.+.+  ++||+|+++.++++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~--~~~D~v~~~~p~~~  122 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS--GKYDTWIMNPPFGS  122 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC--CCEEEEEECCCC--
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC--CCeeEEEECCCchh
Confidence            4578999999999999999999876579999999999999999874     7899999998863  78999999999877


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHH
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  287 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~  287 (343)
                      ..-     .....+++.+.++|  |+ +++.........+...+.
T Consensus       123 ~~~-----~~~~~~l~~~~~~~--g~-~~~~~~~~~~~~~~~~~~  159 (200)
T 1ne2_A          123 VVK-----HSDRAFIDKAFETS--MW-IYSIGNAKARDFLRREFS  159 (200)
T ss_dssp             ----------CHHHHHHHHHHE--EE-EEEEEEGGGHHHHHHHHH
T ss_pred             ccC-----chhHHHHHHHHHhc--Cc-EEEEEcCchHHHHHHHHH
Confidence            631     11235778888888  44 444433333334444343

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.39  E-value=6.1e-13  Score=116.84  Aligned_cols=105  Identities=18%  Similarity=0.279  Sum_probs=86.1

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--c--C---CC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--L--E---RQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~--~---~~  230 (343)
                      ...++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...++ .+++++++|+.+..  .  .   ++
T Consensus        66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  145 (229)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence            3366789999999999999999986 2 34899999999999999999998887 48999999986542  1  1   68


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ||+|++....          .....+++.+.++|+|||++++...
T Consensus       146 ~D~v~~d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          146 FDVAVVDADK----------ENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             EEEEEECSCS----------TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEECCCH----------HHHHHHHHHHHHHcCCCeEEEEECC
Confidence            9999986542          2345678999999999999999644

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.39  E-value=3.2e-12  Score=110.43  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=82.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.+++++...++ +++++++|+.+.+  ++||+|+++.++..
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN--SRVDIVIMNPPFGS  124 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC--CCCSEEEECCCCSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC--CCCCEEEEcCCCcc
Confidence            45789999999999999999998766899999999999999999988887 8999999998853  58999999988765


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ..     ......+++.+.++|  ||.+++.
T Consensus       125 ~~-----~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          125 QR-----KHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             SS-----TTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             cc-----CCchHHHHHHHHHhc--CcEEEEE
Confidence            42     122245778888888  5544433

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.39  E-value=1.7e-12  Score=117.77  Aligned_cols=113  Identities=17%  Similarity=0.234  Sum_probs=90.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++++...++ +++++.++|+.+...+++||+|+++..
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~~  190 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP  190 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECCc
Confidence            56789999999999999999987 4 35899999999999999999998887 589999999988644568999998421


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHHHHH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS  287 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~~~~  287 (343)
                                  ....+++++.++|+|||++++..+.. ...++.+.+.
T Consensus       191 ------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~  227 (277)
T 1o54_A          191 ------------DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQ  227 (277)
T ss_dssp             ------------CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             ------------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence                        12256799999999999999987754 2333444443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.39  E-value=2.8e-12  Score=115.33  Aligned_cols=111  Identities=17%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CCCeEEEEccCc--cHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCCcc
Q 019324          164 SSWSVLDIGTGN--GLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ  232 (343)
Q Consensus       164 ~~~~VLDiGcG~--G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~fD  232 (343)
                      ....|||||||+  +..+..+++.  +..+|+++|.|+.|++.|++++...+..++.|+++|+.+...       .+.||
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence            346899999997  3344444432  334999999999999999998865433479999999988521       24455


Q ss_pred             -----EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          233 -----LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       233 -----~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                           .|+++.+|+++.    ...+...+++++.+.|+|||+|++++....
T Consensus       158 ~~~p~av~~~avLH~l~----d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVL----DEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             TTSCCEEEEESCGGGSC----GGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             cCCcchHHhhhhHhcCC----chhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence                 688999999983    112256788999999999999999876654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.38  E-value=1.7e-12  Score=119.51  Aligned_cols=110  Identities=20%  Similarity=0.318  Sum_probs=82.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHH--cC--CCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANR--DG--FSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~--~~--~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      .++.+|||||||+|.++..+++.+ ..+|+++|+|+.+++.|++++..  .+  .++++++++|+.+..  .+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            346799999999999999999883 45899999999999999998765  22  258999999987631  357899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++.... +  .+........+++++.++|+|||++++...
T Consensus       174 ~d~~~~-~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          174 TDSSDP-M--GPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             EECC--------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCCC-C--CcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            865422 1  111112234688999999999999999763

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.37  E-value=1.5e-12  Score=112.02  Aligned_cols=114  Identities=15%  Similarity=0.256  Sum_probs=81.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------------  226 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------------  226 (343)
                      .++.+|||+|||+|.++..+++. +  ..+|+|+|+|+.+           ..+++.++++|+.+..             
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~   89 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM   89 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccc
Confidence            56789999999999999999987 3  2489999999832           1257899999998865             


Q ss_pred             ------------c-CCCccEEEECccccccccCCCChh----hHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          227 ------------L-ERQFQLVMDKGTLDAIGLHPDGPL----KRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       227 ------------~-~~~fD~V~~~~~l~~i~~~~~~~~----~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                                  + +++||+|+++..+++...+.....    ....+++++.++|||||.+++..+... ..++...+.
T Consensus        90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~  168 (201)
T 2plw_A           90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLK  168 (201)
T ss_dssp             --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHH
T ss_pred             cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHH
Confidence                        2 468999999877654321100001    112478899999999999999665543 344444443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.37  E-value=1.2e-12  Score=118.53  Aligned_cols=103  Identities=21%  Similarity=0.311  Sum_probs=86.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHc-C--CCceEEEEccCCCCcc-CCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-G--FSCIKFLVDDVLDTKL-ERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~-~--~~~i~~~~~D~~~~~~-~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++... +  .+++++.++|+.+... +++||+|++
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~  177 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL  177 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence            66789999999999999999985 3 348999999999999999999877 5  4689999999988754 578999998


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +..            ....+++++.++|+|||++++..++.
T Consensus       178 ~~~------------~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          178 DML------------APWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             ESS------------CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CCc------------CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            421            11246799999999999999987764

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.37  E-value=3e-12  Score=119.22  Aligned_cols=109  Identities=18%  Similarity=0.376  Sum_probs=84.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc--CC--CceEEEEccCCCCc---cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK---LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~--~~--~~i~~~~~D~~~~~---~~~~fD~V  234 (343)
                      .++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++...  ++  ++++++++|+.+..   .+++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            45789999999999999999987 3458999999999999999988652  22  58999999987642   24689999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +++... ..  ++........+++.+.++|+|||++++..
T Consensus       199 i~d~~~-p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          199 IVDSSD-PI--GPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EECCCC-TT--SGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCC-cc--CcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            986532 11  11111113578899999999999999963

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.36  E-value=6.6e-13  Score=118.72  Aligned_cols=110  Identities=18%  Similarity=0.187  Sum_probs=76.9

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCC---ccC----CCccEE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT---KLE----RQFQLV  234 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~---~~~----~~fD~V  234 (343)
                      ++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|++++..+++. +++++++|+.+.   .+.    ++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            5679999999999999988876 2248999999999999999999988875 499999997652   222    589999


Q ss_pred             EECccccccccC--C---C---ChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          235 MDKGTLDAIGLH--P---D---GPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       235 ~~~~~l~~i~~~--~---~---~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +++.++......  .   .   .......++..+.++|||||.+.+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            999776543200  0   0   0011224567788888888877654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.36  E-value=2.3e-12  Score=120.16  Aligned_cols=104  Identities=18%  Similarity=0.173  Sum_probs=82.1

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcC-----------CCceEEEEccCCCCc--
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDG-----------FSCIKFLVDDVLDTK--  226 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~-----------~~~i~~~~~D~~~~~--  226 (343)
                      ..++.+|||+|||+|.++..+++. |. .+|+|+|+++.+++.|++++...+           ..++++.++|+.+..  
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            367889999999999999999987 54 589999999999999999987532           247999999998863  


Q ss_pred             c-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          227 L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       227 ~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      + +++||+|+++....            ..+++++.++|||||++++..+..
T Consensus       183 ~~~~~fD~V~~~~~~~------------~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          183 IKSLTFDAVALDMLNP------------HVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             -----EEEEEECSSST------------TTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             cCCCCeeEEEECCCCH------------HHHHHHHHHhcCCCcEEEEEeCCH
Confidence            2 46899999853211            125699999999999999877643

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.36  E-value=1.3e-12  Score=112.12  Aligned_cols=113  Identities=12%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--------C----CC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------E----RQ  230 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--------~----~~  230 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+++..           ..++++++++|+.+...        .    ++
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~   91 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEK   91 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred             CCCCEEEEEeecCCHHHHHHHHcC-CcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence            568899999999999999999984 489999999852           23589999999988641        1    48


Q ss_pred             ccEEEECccccccccCC----CChhhHHHHHHHHhhccCCCcEEEEEecCCCh-HHHHHHHH
Q 019324          231 FQLVMDKGTLDAIGLHP----DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHEVS  287 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~----~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~-~~~~~~~~  287 (343)
                      ||+|+++...+....+.    .........++.+.++|||||.|++..+.... ..+...++
T Consensus        92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~  153 (191)
T 3dou_A           92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWR  153 (191)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHG
T ss_pred             ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHH
Confidence            99999986433221000    00122346788899999999999997665543 34544444

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.36  E-value=1.8e-12  Score=118.00  Aligned_cols=109  Identities=20%  Similarity=0.287  Sum_probs=83.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-----------CCCceEEEEccCCCCcc-CCC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-----------GFSCIKFLVDDVLDTKL-ERQ  230 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-----------~~~~i~~~~~D~~~~~~-~~~  230 (343)
                      .++.+|||||||+|.++..+++.+..+|+++|+|+.+++.|++++ ..           ..++++++++|+.+... +++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            346799999999999999999886569999999999999999987 32           22589999999865321 578


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ||+|+++... ..  .+........+++.+.++|+|||++++...
T Consensus       153 fD~Ii~d~~~-~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          153 FDVIIADSTD-PV--GPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             EEEEEEECCC-CC-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEECCCC-CC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            9999986542 11  111111125688999999999999999643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.35  E-value=8.2e-12  Score=120.95  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=90.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--------------CCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--------------GFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK  226 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--------------g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~  226 (343)
                      .++.+|||+|||+|.++..+++.              ....++|+|+++.+++.|+.++...|+.  ++.+.++|....+
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~  249 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE  249 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence            45679999999999999988764              1247999999999999999999888875  6889999998876


Q ss_pred             cCCCccEEEECccccccccCCC----------ChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          227 LERQFQLVMDKGTLDAIGLHPD----------GPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       227 ~~~~fD~V~~~~~l~~i~~~~~----------~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ...+||+|+++.++........          .......+++.+.++|||||++.++.++
T Consensus       250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            6568999999988765421100          0112247889999999999999988764

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.35  E-value=3.5e-12  Score=120.75  Aligned_cols=112  Identities=18%  Similarity=0.188  Sum_probs=86.9

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      ..++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++|+...|+ .++++.++|+.+.+. +++||+|+++.
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            46788999999999999999999864 3899999999999999999999988 589999999999865 47899999988


Q ss_pred             cccccccCCCChhh-HHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLK-RIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~-~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++....-....... ...+++.+.++|  ||.+++.++
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~  330 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT  330 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence            76432111111122 256788899988  555555555

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.35  E-value=3.2e-12  Score=116.02  Aligned_cols=110  Identities=22%  Similarity=0.289  Sum_probs=85.3

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc--C--CCceEEEEccCCCCc--cCCCccEEEE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G--FSCIKFLVDDVLDTK--LERQFQLVMD  236 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~--~--~~~i~~~~~D~~~~~--~~~~fD~V~~  236 (343)
                      .+.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++...  +  .++++++.+|+.+..  ..++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4679999999999999999988 5569999999999999999987541  2  258999999987642  2578999999


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +.... .  .+........+++.+.++|+|||++++...+
T Consensus       155 d~~~~-~--~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          155 DSTEP-V--GPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             SCSSC-C--SCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCC-C--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            65432 2  1111112246889999999999999997654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.34  E-value=1.6e-12  Score=119.55  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--c-CCCccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~-~~~fD~V~~~~~l  240 (343)
                      +.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++.....++++++++|+.+..  . +++||+|++....
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            349999999999999999984 33489999999999999999886544468999999987752  2 4789999986432


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      . .  ..........+++.+.++|+|||++++.....
T Consensus       170 ~-~--~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~  203 (317)
T 3gjy_A          170 G-A--ITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH  203 (317)
T ss_dssp             T-S--CCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             c-c--ccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            2 1  11111122578899999999999999966533

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.33  E-value=2.1e-12  Score=112.32  Aligned_cols=99  Identities=18%  Similarity=0.264  Sum_probs=78.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..++    .+++|+|+|+.               ++.+.++|+.+.+. +++||+|++..+++
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  126 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM  126 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence            567899999999999998873    48999999987               45688999988765 57899999988774


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC---ChHHHHHHHHh
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS---TKDELVHEVSN  288 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~---~~~~~~~~~~~  288 (343)
                      +        .+...+++++.++|+|||.+++..+..   +..++.+.+..
T Consensus       127 ~--------~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~  168 (215)
T 2zfu_A          127 G--------TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTK  168 (215)
T ss_dssp             S--------SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHH
T ss_pred             c--------cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHH
Confidence            2        245678899999999999999986654   34555555553

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.33  E-value=4.7e-12  Score=111.09  Aligned_cols=102  Identities=17%  Similarity=0.098  Sum_probs=84.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||||||.|-++..+.  +...|+|+|+|+.+++.+++++..++ .+..+.++|....+++++||+|++.-++++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            568899999999999999988  44599999999999999999998888 489999999999888889999999988887


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +-     .......+ ++...|+++|+++-.
T Consensus       181 LE-----~q~~~~~~-~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          181 LE-----REQAGSAM-ALLQSLNTPRMAVSF  205 (253)
T ss_dssp             HH-----HHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred             hh-----hhchhhHH-HHHHHhcCCCEEEEc
Confidence            72     01111333 788899999766653

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.33  E-value=1.3e-12  Score=118.75  Aligned_cols=96  Identities=11%  Similarity=0.143  Sum_probs=72.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEE-EEccCCCCc---cC-CCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKF-LVDDVLDTK---LE-RQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~-~~~D~~~~~---~~-~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+|+.|++.+.++.     +++.. ...|+....   ++ .+||+|++.
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~-----~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d  158 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD-----DRVRSMEQYNFRYAEPVDFTEGLPSFASID  158 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC-----TTEEEECSCCGGGCCGGGCTTCCCSEEEEC
T ss_pred             ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cccceecccCceecchhhCCCCCCCEEEEE
Confidence            457799999999999999999998779999999999999854421     23322 223443332   22 349999997


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .++..+          ..++.++.++|||||.+++.
T Consensus       159 ~sf~sl----------~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          159 VSFISL----------NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CSSSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred             eeHhhH----------HHHHHHHHHHcCcCCEEEEE
Confidence            766544          35779999999999999986

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.32  E-value=2.2e-12  Score=119.28  Aligned_cols=112  Identities=21%  Similarity=0.277  Sum_probs=84.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHH--cC---CCceEEEEccCCCCc--cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DG---FSCIKFLVDDVLDTK--LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~--~~---~~~i~~~~~D~~~~~--~~~~fD~V  234 (343)
                      .++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++..  .+   .++++++++|+.+..  .+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            34679999999999999999987 345899999999999999998764  12   358999999987742  35789999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +++.......-.+........+++++.++|||||++++..
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            9975442200001111113578899999999999999964

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.32  E-value=4.4e-13  Score=120.98  Aligned_cols=111  Identities=12%  Similarity=0.008  Sum_probs=77.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH---HcCCCceEEE--EccCCCCccCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN---RDGFSCIKFL--VDDVLDTKLERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~---~~~~~~i~~~--~~D~~~~~~~~~fD~V~~~  237 (343)
                      .++.+|||||||+|.++..+++.  .+|+|+|+++ ++..++++..   ..+ .++.++  ++|+..++ +++||+|+|+
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~-~~~fD~V~sd  147 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP-VERTDVIMCD  147 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC-CCCCSEEEEC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC-CCCCcEEEEe
Confidence            56789999999999999999998  4899999999 5333221110   011 168999  89998875 6789999997


Q ss_pred             ccccccccCCC-ChhhHHHHHHHHhhccCCCc--EEEEEecCCChH
Q 019324          238 GTLDAIGLHPD-GPLKRIMYWDSVSKLVAPGG--LLVITSCNSTKD  280 (343)
Q Consensus       238 ~~l~~i~~~~~-~~~~~~~~l~~~~~~LkpgG--~lii~~~~~~~~  280 (343)
                      .. ++.. ++. .......+++.+.++|||||  .+++........
T Consensus       148 ~~-~~~~-~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~  191 (265)
T 2oxt_A          148 VG-ESSP-KWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSV  191 (265)
T ss_dssp             CC-CCCS-CHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSH
T ss_pred             Cc-ccCC-ccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCCh
Confidence            65 3221 110 00111237899999999999  999976665445

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.31  E-value=4.4e-13  Score=121.66  Aligned_cols=111  Identities=13%  Similarity=0.041  Sum_probs=77.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH---HcCCCceEEE--EccCCCCccCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN---RDGFSCIKFL--VDDVLDTKLERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~---~~~~~~i~~~--~~D~~~~~~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++.  .+|+|+|+|+ |+..++++..   ..+ .++.++  ++|+..++ +++||+|+++
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~-~~~fD~Vvsd  155 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKME-PFQADTVLCD  155 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGCC-CCCCSEEEEC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhCC-CCCcCEEEEC
Confidence            56789999999999999999998  4899999999 5433322110   011 178999  99998865 6789999997


Q ss_pred             ccccccccCCC-ChhhHHHHHHHHhhccCCCc--EEEEEecCCChH
Q 019324          238 GTLDAIGLHPD-GPLKRIMYWDSVSKLVAPGG--LLVITSCNSTKD  280 (343)
Q Consensus       238 ~~l~~i~~~~~-~~~~~~~~l~~~~~~LkpgG--~lii~~~~~~~~  280 (343)
                      .. .+.. ++. .......+++.+.++|||||  .+++..+.....
T Consensus       156 ~~-~~~~-~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~  199 (276)
T 2wa2_A          156 IG-ESNP-TAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSC  199 (276)
T ss_dssp             CC-CCCS-CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSH
T ss_pred             CC-cCCC-chhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCch
Confidence            65 3221 100 00111237899999999999  999876665444

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.31  E-value=2.8e-12  Score=116.96  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=68.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....+. ++++++++|+.+.+.+ .||+|+++.+++
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-~fD~vv~nlpy~  104 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTCVANLPYQ  104 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CCSEEEEECCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-hhcEEEEecCcc
Confidence            5678999999999999999999865 899999999999999999876665 5899999999987654 799999987665


Q ss_pred             cc
Q 019324          242 AI  243 (343)
Q Consensus       242 ~i  243 (343)
                      ..
T Consensus       105 ~~  106 (285)
T 1zq9_A          105 IS  106 (285)
T ss_dssp             GH
T ss_pred             cc
Confidence            43

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.31  E-value=2.5e-12  Score=109.96  Aligned_cols=114  Identities=18%  Similarity=0.261  Sum_probs=80.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CC---------CcEEEEeCChHHHHHHHHHHHHcCCCceEEE-EccCCCCcc----
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GF---------SDLTGVDYSEDAINLAQSLANRDGFSCIKFL-VDDVLDTKL----  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~---------~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~-~~D~~~~~~----  227 (343)
                      .++.+|||+|||+|.++..+++. |.         .+|+|+|+|+.+           ..++++++ ++|+.....    
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence            56789999999999999999987 43         589999999842           22478899 899876431    


Q ss_pred             -----CCCccEEEECccccccccCCCCh----hhHHHHHHHHhhccCCCcEEEEEecCCCh-HHHHHHHH
Q 019324          228 -----ERQFQLVMDKGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHEVS  287 (343)
Q Consensus       228 -----~~~fD~V~~~~~l~~i~~~~~~~----~~~~~~l~~~~~~LkpgG~lii~~~~~~~-~~~~~~~~  287 (343)
                           +++||+|+++..++....+....    .....+++++.++|||||++++..+.... .++...+.
T Consensus        90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~  159 (196)
T 2nyu_A           90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLT  159 (196)
T ss_dssp             HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHH
T ss_pred             HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHH
Confidence                 35899999977554432110000    01147889999999999999998765543 34444444

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.31  E-value=2.8e-11  Score=111.43  Aligned_cols=127  Identities=14%  Similarity=0.147  Sum_probs=94.3

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC----CCccEEE
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE----RQFQLVM  235 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~----~~fD~V~  235 (343)
                      ..++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++++++..|+.++.++++|+.+....    .+||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            367889999999999999999885  3358999999999999999999999988899999999876432    5799999


Q ss_pred             ECccccccc---cCCCC----------hh----hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          236 DKGTLDAIG---LHPDG----------PL----KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       236 ~~~~l~~i~---~~~~~----------~~----~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                      ++.......   .+++.          ..    ....+|+.+.++|+ ||+++.++|.....+....+..|
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~  249 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDA  249 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHH
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHH
Confidence            865432221   12221          11    11356788888887 99999999988766655544443

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.31  E-value=8.2e-12  Score=120.02  Aligned_cols=100  Identities=19%  Similarity=0.264  Sum_probs=81.1

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++|+..+++. ++|+++|+.+.... +||+|+++....
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~-~fD~Vv~dPPr~  364 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK-GFDTVIVDPPRA  364 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT-TCSEEEECCCTT
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc-CCCEEEEcCCcc
Confidence            4678899999999999999999985 48999999999999999999998886 99999999987444 899999976532


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ..       .  ..+++.+. .|+|||+++++.
T Consensus       365 g~-------~--~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          365 GL-------H--PRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             CS-------C--HHHHHHHH-HHCCSEEEEEES
T ss_pred             ch-------H--HHHHHHHH-hcCCCcEEEEEC
Confidence            22       1  12344444 489999988864

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.31  E-value=4.3e-12  Score=115.60  Aligned_cols=111  Identities=15%  Similarity=0.285  Sum_probs=85.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      .++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...+    .++++++++|+.+..  .+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            346799999999999999999873 4599999999999999999876532    258999999987642  257899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +.... .+  ++........+++.+.++|+|||++++...+
T Consensus       157 ~d~~~-~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          157 VDSSD-PI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EECCC-TT--TGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCC-CC--CcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            86432 21  1111111157889999999999999997654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.30  E-value=2.8e-12  Score=118.92  Aligned_cols=112  Identities=17%  Similarity=0.325  Sum_probs=85.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc--C--CCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G--FSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~--~--~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      .++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++...  +  .++++++++|+.+..  .+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            45689999999999999999987 4459999999999999999987652  1  258999999987642  257899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++.. +.+  ++........+++++.++|+|||++++...+.
T Consensus       195 ~d~~-~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  233 (321)
T 2pt6_A          195 VDSS-DPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCESL  233 (321)
T ss_dssp             EECC-CSS--SGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             ECCc-CCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            8653 111  11111111578899999999999999976543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.29  E-value=3.8e-12  Score=112.72  Aligned_cols=106  Identities=15%  Similarity=0.158  Sum_probs=89.5

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      ...++.+|||||||.|-++..++.. +...|+++|+++.+++.++.++..+|+ +.++.+.|.....+.+.||+++++-+
T Consensus       129 ~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~~~~~p~~~~DvaL~lkt  207 (281)
T 3lcv_B          129 HLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADLLEDRLDEPADVTLLLKT  207 (281)
T ss_dssp             GSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCTTTSCCCSCCSEEEETTC
T ss_pred             ccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeecccCCCCCcchHHHHHH
Confidence            3355889999999999999999887 555999999999999999999999997 58999999999888899999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ++++-     .......+ ++...|+|+|+++--
T Consensus       208 i~~Le-----~q~kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          208 LPCLE-----TQQRGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             HHHHH-----HHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred             HHHhh-----hhhhHHHH-HHHHHhCCCCEEEec
Confidence            98882     11112445 899999999987753

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.29  E-value=2e-12  Score=118.97  Aligned_cols=109  Identities=11%  Similarity=0.097  Sum_probs=76.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeC----ChHHHHHHHHHHHHcCCCceEEEEc-cCCCCccCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY----SEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~----s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~~~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++.  .+|+|+|+    ++.+++.++  ....+.+++.++++ |+...+ .++||+|+|+
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~-~~~fD~V~sd  155 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP-PERCDTLLCD  155 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC-CCCCSEEEEC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC-cCCCCEEEEC
Confidence            56789999999999999999998  38999999    554442211  11112247999999 988764 4689999998


Q ss_pred             ccccccccCCC-ChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          238 GTLDAIGLHPD-GPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       238 ~~l~~i~~~~~-~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ..+. .. +.. .......+|..+.++|||||.|++..+...
T Consensus       156 ~~~~-~g-~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~  195 (305)
T 2p41_A          156 IGES-SP-NPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY  195 (305)
T ss_dssp             CCCC-CS-SHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred             Cccc-cC-cchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence            7653 11 110 011112578889999999999999766553

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.29  E-value=2.4e-11  Score=114.17  Aligned_cols=107  Identities=18%  Similarity=0.131  Sum_probs=87.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+..+|||||||+|.++..+++.. ..+++..|. |.+++.++++....+.++|+++.+|+.+.+. ..+|+|++..+++
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-~~~D~~~~~~vlh  255 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-PEADLYILARVLH  255 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-CCCSEEEEESSGG
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-CCceEEEeeeecc
Confidence            446799999999999999999883 337888887 8899999998876666789999999987644 3589999999887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ...     ..+...+|+++++.|+|||++++....
T Consensus       256 ~~~-----d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          256 DWA-----DGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             GSC-----HHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             cCC-----HHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence            662     456678899999999999999997653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.28  E-value=5.4e-12  Score=118.79  Aligned_cols=96  Identities=24%  Similarity=0.284  Sum_probs=74.8

Q ss_pred             CCCCeEEEEccC------ccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------
Q 019324          163 LSSWSVLDIGTG------NGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG------~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------  227 (343)
                      .++.+|||||||      +|..+..+++.  +..+|+|+|+|+.|.        . ..++++|+++|+.+.++       
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-~~~rI~fv~GDa~dlpf~~~l~~~  285 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-DELRIRTIQGDQNDAEFLDRIARR  285 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-CBTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-cCCCcEEEEecccccchhhhhhcc
Confidence            356899999999      67667666654  334899999999973        1 12589999999998653       


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +++||+|++++. ++.       .+....|+++.++|||||++++...
T Consensus       286 d~sFDlVisdgs-H~~-------~d~~~aL~el~rvLKPGGvlVi~Dl  325 (419)
T 3sso_A          286 YGPFDIVIDDGS-HIN-------AHVRTSFAALFPHVRPGGLYVIEDM  325 (419)
T ss_dssp             HCCEEEEEECSC-CCH-------HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred             cCCccEEEECCc-ccc-------hhHHHHHHHHHHhcCCCeEEEEEec
Confidence            479999999754 222       5667889999999999999999643

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.28  E-value=7.4e-12  Score=117.30  Aligned_cols=104  Identities=13%  Similarity=0.183  Sum_probs=79.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .+..+|||||||+|.++..+++... .+++++|++ .++.  +++....+. +++++..+|+.+ +.+ +||+|++..++
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~~D~v~~~~vl  257 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-HADVHVLKRIL  257 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-CCSEEEEESCG
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC-CCC-CCcEEEEehhc
Confidence            5678999999999999999998732 379999994 4444  333322222 479999999973 334 89999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++.     ..+...++++++++|||||++++....
T Consensus       258 h~~~-----d~~~~~~L~~~~~~LkpgG~l~i~e~~  288 (348)
T 3lst_A          258 HNWG-----DEDSVRILTNCRRVMPAHGRVLVIDAV  288 (348)
T ss_dssp             GGSC-----HHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             cCCC-----HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            8772     344468999999999999999997653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.28  E-value=3.5e-12  Score=113.15  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=76.8

Q ss_pred             CCCeEEEEccCccHHHHHHHhc----C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC---c-cC-CCccE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---K-LE-RQFQL  233 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~---~-~~-~~fD~  233 (343)
                      ++.+|||||||+|..+..|++.    + ..+|+|+|+|+.+++.|+.    .. ++++++++|+.+.   + .. .+||+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~-~~v~~~~gD~~~~~~l~~~~~~~fD~  155 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DM-ENITLHQGDCSDLTTFEHLREMAHPL  155 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GC-TTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cC-CceEEEECcchhHHHHHhhccCCCCE
Confidence            4679999999999999999885    2 3489999999999998872    12 5899999999885   3 23 37999


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhh-ccCCCcEEEEEec
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSK-LVAPGGLLVITSC  275 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~-~LkpgG~lii~~~  275 (343)
                      |++...  +    .    ....++.++.+ +|||||++++...
T Consensus       156 I~~d~~--~----~----~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          156 IFIDNA--H----A----NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             EEEESS--C----S----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             EEECCc--h----H----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            997554  1    1    33467899997 9999999999653

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.28  E-value=9.9e-12  Score=117.41  Aligned_cols=100  Identities=13%  Similarity=0.165  Sum_probs=82.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++++      ++++++.+|+.+ +.+.. |+|++..+++
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p~~-D~v~~~~vlh  272 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD-GVPKG-DAIFIKWICH  272 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC-SEEEEESCGG
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC-CCCCC-CEEEEechhh
Confidence            457899999999999999999873 338999999 8888877642      489999999987 34434 9999999988


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++.     ..+...++++++++|||||++++....
T Consensus       273 ~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          273 DWS-----DEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             GBC-----HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             cCC-----HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            773     355668899999999999999997654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.28  E-value=6.5e-12  Score=115.98  Aligned_cols=111  Identities=20%  Similarity=0.343  Sum_probs=82.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc--C--CCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G--FSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~--~--~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      .++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++...  +  .++++++.+|+.+..  .+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            45689999999999999999987 3459999999999999999988643  2  258999999987642  357899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++.. +.+  .+........+++.+.++|+|||++++...+
T Consensus       187 ~d~~-~~~--~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~  224 (314)
T 2b2c_A          187 TDSS-DPV--GPAESLFGQSYYELLRDALKEDGILSSQGES  224 (314)
T ss_dssp             ECCC----------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCC-CCC--CcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence            8653 222  1111111157889999999999999997533

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.28  E-value=5.6e-12  Score=119.22  Aligned_cols=98  Identities=19%  Similarity=0.231  Sum_probs=81.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+..+|||||||+|.++..+++... .+++++|+ +.+++.+++.      ++++++.+|+.+ +.+. ||+|++..+++
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~-~D~v~~~~~lh  278 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------SGIEHVGGDMFA-SVPQ-GDAMILKAVCH  278 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCC-EEEEEEESSGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------CCCEEEeCCccc-CCCC-CCEEEEecccc
Confidence            4578999999999999999998742 37899999 9999887652      479999999987 4444 99999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ++.     ......++++++++|||||++++..
T Consensus       279 ~~~-----d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          279 NWS-----DEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCC-----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            772     2344589999999999999999864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.27  E-value=9.9e-11  Score=112.90  Aligned_cols=100  Identities=17%  Similarity=0.226  Sum_probs=80.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----c-CCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~-~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++|+..+++++++|+++|+.+..    . +++||+|+++
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            467899999999999999999984 589999999999999999999999889999999998742    1 4689999987


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ......       .   .+++.+.+ ++|+++++++.
T Consensus       364 PPr~g~-------~---~~~~~l~~-~~p~~ivyvsc  389 (433)
T 1uwv_A          364 PARAGA-------A---GVMQQIIK-LEPIRIVYVSC  389 (433)
T ss_dssp             CCTTCC-------H---HHHHHHHH-HCCSEEEEEES
T ss_pred             CCCccH-------H---HHHHHHHh-cCCCeEEEEEC
Confidence            654322       1   23444443 68988877653

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.26  E-value=1.3e-11  Score=116.54  Aligned_cols=100  Identities=13%  Similarity=0.189  Sum_probs=82.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++      ++++|+.+|+.+ +.+.. |+|++..+++
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-D~v~~~~vlh  270 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFK-EVPSG-DTILMKWILH  270 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC-SEEEEESCGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCC-CCCCC-CEEEehHHhc
Confidence            56789999999999999999986 3348999999 8888877642      489999999987 44434 9999999887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++.     ..+...+|++++++|||||++++....
T Consensus       271 ~~~-----d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          271 DWS-----DQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             GSC-----HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             cCC-----HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            762     356678999999999999999997654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.25  E-value=1.4e-11  Score=116.43  Aligned_cols=100  Identities=14%  Similarity=0.200  Sum_probs=81.8

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--C--------------
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--E--------------  228 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~--------------  228 (343)
                      +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++|+..+++++++|+++|+.+...  .              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  292 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK  292 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred             CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence            578999999999999999986 45899999999999999999999998899999999876421  1              


Q ss_pred             -CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          229 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       229 -~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                       ..||+|+.+.....+             ..++.+.|+++|.+++.+|+..
T Consensus       293 ~~~fD~Vv~dPPr~g~-------------~~~~~~~l~~~g~ivyvsc~p~  330 (369)
T 3bt7_A          293 SYQCETIFVDPPRSGL-------------DSETEKMVQAYPRILYISCNPE  330 (369)
T ss_dssp             GCCEEEEEECCCTTCC-------------CHHHHHHHTTSSEEEEEESCHH
T ss_pred             cCCCCEEEECcCcccc-------------HHHHHHHHhCCCEEEEEECCHH
Confidence             279999986543222             2566777789999999888753

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.25  E-value=2.6e-11  Score=111.34  Aligned_cols=78  Identities=21%  Similarity=0.270  Sum_probs=64.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...+.++++++++|+.+.+.. +||+|+++.++..
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~-~~D~Vv~n~py~~  118 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP-KFDVCTANIPYKI  118 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC-CCSEEEEECCGGG
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc-cCCEEEEcCCccc
Confidence            5678999999999999999999864 8999999999999999998877777899999999887654 8999999876543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.24  E-value=1.5e-11  Score=115.42  Aligned_cols=100  Identities=13%  Similarity=0.118  Sum_probs=82.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++.      ++++++.+|+.+ +.+ .||+|++..+++
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p-~~D~v~~~~~lh  257 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------NNLTYVGGDMFT-SIP-NADAVLLKYILH  257 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------TTEEEEECCTTT-CCC-CCSEEEEESCGG
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------CCcEEEeccccC-CCC-CccEEEeehhhc
Confidence            45689999999999999999987 2338999999 9999888752      469999999977 344 399999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCC---CcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAP---GGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~Lkp---gG~lii~~~~  276 (343)
                      ++.     ......++++++++|||   ||++++....
T Consensus       258 ~~~-----d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          258 NWT-----DKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             GSC-----HHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             cCC-----HHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            772     23445889999999999   9999997553

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.24  E-value=6.3e-12  Score=111.18  Aligned_cols=97  Identities=9%  Similarity=0.138  Sum_probs=67.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEE-EccCCCCc---cCC-CccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL-VDDVLDTK---LER-QFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~-~~D~~~~~---~~~-~fD~V~~~  237 (343)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+.|++.++++..     ++... ..++....   .+. .||.+.+.
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~D  110 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE-----RVVVMEQFNFRNAVLADFEQGRPSFTSID  110 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT-----TEEEECSCCGGGCCGGGCCSCCCSEEEEC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc-----cccccccceEEEeCHhHcCcCCCCEEEEE
Confidence            4567999999999999999999986699999999999999877542     22111 11111111   111 35666555


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .++..+          ..++.++.++|||||.+++..
T Consensus       111 ~v~~~l----------~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          111 VSFISL----------DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             CSSSCG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEhhhH----------HHHHHHHHHhccCCCEEEEEE
Confidence            444332          357799999999999999864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.24  E-value=7.4e-12  Score=112.74  Aligned_cols=99  Identities=12%  Similarity=0.078  Sum_probs=80.6

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH----cCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR----DGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~----~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      .+.+|||||||+|.++..+++.+ .+|+++|+++.+++.|++++..    ...++++++.+|+.+..  ++||+|++...
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~  148 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQE  148 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESSC
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECCC
Confidence            46799999999999999999886 7999999999999999987532    12258999999998865  78999998621


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                              + +   ..+++.+.++|+|||++++...+.
T Consensus       149 --------d-p---~~~~~~~~~~L~pgG~lv~~~~~~  174 (262)
T 2cmg_A          149 --------P-D---IHRIDGLKRMLKEDGVFISVAKHP  174 (262)
T ss_dssp             --------C-C---HHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             --------C-h---HHHHHHHHHhcCCCcEEEEEcCCc
Confidence                    1 1   137899999999999999965443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.22  E-value=1.2e-10  Score=110.44  Aligned_cols=116  Identities=15%  Similarity=0.211  Sum_probs=92.4

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCC---------------------------------------CcEEEEeCChHHHH
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAIN  201 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~---------------------------------------~~v~gvD~s~~~i~  201 (343)
                      ...++..|||.+||+|.+++.++..+.                                       .+|+|+|+|+.|++
T Consensus       191 ~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~  270 (384)
T 3ldg_A          191 NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVE  270 (384)
T ss_dssp             TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHH
Confidence            336788999999999999998886532                                       25999999999999


Q ss_pred             HHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCC--CcEEEEEecCCC
Q 019324          202 LAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP--GGLLVITSCNST  278 (343)
Q Consensus       202 ~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkp--gG~lii~~~~~~  278 (343)
                      .|++|+...|+. ++++.++|+.+...+.+||+|++|..+..-   .........+.+.+.+.||+  ||.+++.+.+..
T Consensus       271 ~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~r---l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~  347 (384)
T 3ldg_A          271 IARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGER---LLDDKAVDILYNEMGETFAPLKTWSQFILTNDTD  347 (384)
T ss_dssp             HHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTT---TSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTT
T ss_pred             HHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhc---cCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHH
Confidence            999999999985 599999999998776799999999876422   12234555666777777776  999999888665


Q ss_pred             h
Q 019324          279 K  279 (343)
Q Consensus       279 ~  279 (343)
                      .
T Consensus       348 l  348 (384)
T 3ldg_A          348 F  348 (384)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.22  E-value=4.3e-11  Score=113.60  Aligned_cols=116  Identities=17%  Similarity=0.231  Sum_probs=91.3

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCC---------------------------------------CcEEEEeCChHHHHH
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAINL  202 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~---------------------------------------~~v~gvD~s~~~i~~  202 (343)
                      ..++.+|||+|||+|.+++.++..+.                                       ..|+|+|+|+.|++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            35678999999999999998876532                                       269999999999999


Q ss_pred             HHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCC--CcEEEEEecCCCh
Q 019324          203 AQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP--GGLLVITSCNSTK  279 (343)
Q Consensus       203 a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkp--gG~lii~~~~~~~  279 (343)
                      |++|+..+|+. +++|.++|+.+...+.+||+|+++..+..-.   ........+.+.+.+.||+  ||.+++.+.+...
T Consensus       273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl---~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l  349 (385)
T 3ldu_A          273 ARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERL---EDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDF  349 (385)
T ss_dssp             HHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSH---HHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTTH
T ss_pred             HHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCcc---CCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHHH
Confidence            99999999885 7999999999987777999999998763210   1113445566777777766  8999888876654


Q ss_pred             H
Q 019324          280 D  280 (343)
Q Consensus       280 ~  280 (343)
                      .
T Consensus       350 ~  350 (385)
T 3ldu_A          350 E  350 (385)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.21  E-value=2.1e-11  Score=116.95  Aligned_cols=105  Identities=18%  Similarity=0.286  Sum_probs=81.7

Q ss_pred             CCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      ++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|         .+++++++|+......++||+|++|.++.
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~  109 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPGEAFDLILGNPPYG  109 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCSSCEEEEEECCCCC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCccCCCCEEEECcCcc
Confidence            4569999999999999999975  335899999999999877         37899999999876667899999987764


Q ss_pred             ccccC------CCChh----------------hHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLH------PDGPL----------------KRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~------~~~~~----------------~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .....      .....                ....+++.+.++|+|||++++..++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          110 IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             CBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            33210      00110                12267899999999999999987764

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.19  E-value=7.8e-11  Score=112.05  Aligned_cols=116  Identities=15%  Similarity=0.134  Sum_probs=89.5

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCC---------------------------------------CcEEEEeCChHHHH
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAIN  201 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~---------------------------------------~~v~gvD~s~~~i~  201 (343)
                      ...++..|||++||+|.+++.++..+.                                       ..|+|+|+|+.|++
T Consensus       198 ~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~  277 (393)
T 3k0b_A          198 SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIE  277 (393)
T ss_dssp             CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHH
Confidence            336778999999999999988886532                                       25999999999999


Q ss_pred             HHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCC--CcEEEEEecCCC
Q 019324          202 LAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP--GGLLVITSCNST  278 (343)
Q Consensus       202 ~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkp--gG~lii~~~~~~  278 (343)
                      .|++|+...|+. ++++.++|+.+...+.+||+|+++..+..-.   ........+.+.+.+.||+  ||.+++.+.+..
T Consensus       278 ~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl---~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~  354 (393)
T 3k0b_A          278 IAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERL---EDEEAVRQLYREMGIVYKRMPTWSVYVLTSYEL  354 (393)
T ss_dssp             HHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSH---HHHHHHHHHHHHHHHHHHTCTTCEEEEEECCTT
T ss_pred             HHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCcccc---CCchhHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            999999999985 5999999999987777999999997763210   0112344455666666655  999999887665


Q ss_pred             h
Q 019324          279 K  279 (343)
Q Consensus       279 ~  279 (343)
                      .
T Consensus       355 l  355 (393)
T 3k0b_A          355 F  355 (393)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.15  E-value=4.8e-11  Score=112.89  Aligned_cols=100  Identities=20%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc---------------CCCceEEEEccCCCCcc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD---------------GFSCIKFLVDDVLDTKL  227 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~---------------~~~~i~~~~~D~~~~~~  227 (343)
                      ++.+|||+|||+|.+++.++.. +..+|+++|+++.+++.+++|++.+               ++.+++++++|+.....
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            4679999999999999999987 5458999999999999999999998               77669999999876532


Q ss_pred             --CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          228 --ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 --~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                        .+.||+|+.+...           ....+++.+.+.|||||+++++.
T Consensus       127 ~~~~~fD~I~lDP~~-----------~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDPFG-----------SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECCSS-----------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCCCC-----------CHHHHHHHHHHhcCCCCEEEEEe
Confidence              4579999965421           11357789999999999877754

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.15  E-value=7.2e-11  Score=110.97  Aligned_cols=99  Identities=14%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++      .++++++.+|+.+ +.+ .||+|++..+++
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~D~v~~~~vlh  262 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP-SADAVLLKWVLH  262 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC-CCSEEEEESCGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC-CceEEEEccccc
Confidence            356799999999999999999873 237999999 788877764      2479999999987 444 599999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCC---CcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAP---GGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~Lkp---gG~lii~~~  275 (343)
                      ++.     ......+++++.++|||   ||++++...
T Consensus       263 ~~~-----d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          263 DWN-----DEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             GSC-----HHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             CCC-----HHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            772     23455899999999999   999998654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.15  E-value=7.5e-11  Score=116.66  Aligned_cols=115  Identities=12%  Similarity=0.118  Sum_probs=88.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc----C---------------CCcEEEEeCChHHHHHHHHHHHHcCCCc-----eEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ----G---------------FSDLTGVDYSEDAINLAQSLANRDGFSC-----IKFL  218 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g---------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~-----i~~~  218 (343)
                      .++.+|||.|||+|.++..+++.    +               ...++|+|+++.++..|+.++...++.+     +.+.
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~  247 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  247 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence            45679999999999999888753    1               1379999999999999999998888754     8899


Q ss_pred             EccCCCCcc--CCCccEEEECccccccccC-------CCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          219 VDDVLDTKL--ERQFQLVMDKGTLDAIGLH-------PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       219 ~~D~~~~~~--~~~fD~V~~~~~l~~i~~~-------~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++|......  ...||+|++|.++......       .........++..+.+.|||||++.++.++.
T Consensus       248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            999876532  4689999999887543210       0011223468899999999999999987654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.14  E-value=1.6e-11  Score=103.38  Aligned_cols=89  Identities=13%  Similarity=0.190  Sum_probs=73.2

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEEC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDK  237 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~~  237 (343)
                      ..++.+|||+|||.               +++|+|+.|++.|+++..    .++++.++|+.+.+.    +++||+|++.
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~   70 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG----NEGRVSVENIKQLLQSAHKESSFDIILSG   70 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT----TTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc----cCcEEEEechhcCccccCCCCCEeEEEEC
Confidence            36789999999986               239999999999998764    258999999988764    5789999999


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+++++.      .+...++++++++|||||++++..+
T Consensus        71 ~~l~~~~------~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           71 LVPGSTT------LHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             CSTTCCC------CCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             Chhhhcc------cCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            9888771      1235688999999999999999654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.13  E-value=3.1e-10  Score=112.02  Aligned_cols=127  Identities=16%  Similarity=0.098  Sum_probs=95.4

Q ss_pred             cccccchhhhhc---cCCCCeEEEEccCccHHHHHHHhc----CCCcEEEEeCChHHHHHHHHHHHHcCC--CceEEEEc
Q 019324          150 DLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVD  220 (343)
Q Consensus       150 ~~~~~~~~~l~~---~~~~~~VLDiGcG~G~~~~~la~~----g~~~v~gvD~s~~~i~~a~~~~~~~~~--~~i~~~~~  220 (343)
                      .+...+..++..   ..++.+|||.+||+|.++..+++.    +...++|+|+++.++..|+.|+...|+  +++.+.++
T Consensus       204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~g  283 (542)
T 3lkd_A          204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNA  283 (542)
T ss_dssp             HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred             HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEec
Confidence            345555555543   246789999999999998888765    234899999999999999999998887  47899999


Q ss_pred             cCCCC--c--cCCCccEEEECccccccc-----------------cCCCChhhHHHHHHHHhhccC-CCcEEEEEecCC
Q 019324          221 DVLDT--K--LERQFQLVMDKGTLDAIG-----------------LHPDGPLKRIMYWDSVSKLVA-PGGLLVITSCNS  277 (343)
Q Consensus       221 D~~~~--~--~~~~fD~V~~~~~l~~i~-----------------~~~~~~~~~~~~l~~~~~~Lk-pgG~lii~~~~~  277 (343)
                      |....  +  ....||+|++|.++..-.                 +.+.. ..-..++..+.+.|+ |||++.++.++.
T Consensus       284 DtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s-~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          284 DTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKS-KADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             CTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTT-CCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCc-hhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            98875  2  257899999998764210                 00111 112358899999999 999999887765

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.11  E-value=6.3e-11  Score=112.28  Aligned_cols=100  Identities=15%  Similarity=0.098  Sum_probs=82.4

Q ss_pred             CCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCc--eEEEEccCCCCc---cCCCccEEEE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTK---LERQFQLVMD  236 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~--i~~~~~D~~~~~---~~~~fD~V~~  236 (343)
                      ++.+|||++||+|.+++.++..  |..+|+++|+++.+++.+++|++.+++.+  ++++++|+.+..   ..+.||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4679999999999999999985  54689999999999999999999999865  999999986642   2457999998


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +. ..          ....+++.+.+.|+|||+++++.
T Consensus       132 DP-~g----------~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP-FG----------TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC-SS----------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC-Cc----------CHHHHHHHHHHHhCCCCEEEEEe
Confidence            75 11          11247789999999999777764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.07  E-value=4.1e-10  Score=102.48  Aligned_cols=112  Identities=13%  Similarity=0.105  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcc------CccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEE-EEccCCCCccCCCccE
Q 019324          163 LSSWSVLDIGT------GNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF-LVDDVLDTKLERQFQL  233 (343)
Q Consensus       163 ~~~~~VLDiGc------G~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~-~~~D~~~~~~~~~fD~  233 (343)
                      .++.+|||+||      |+|.  ..+++. + ..+|+|+|+|+. +            +++++ +++|+.+..+.++||+
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~~~fD~  126 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTANKWDL  126 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCSSCEEE
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCccCcccE
Confidence            56789999999      4476  333333 3 248999999998 1            36888 9999998766678999


Q ss_pred             EEECccccccc---c-CCCChhhHHHHHHHHhhccCCCcEEEEEecCC-ChHHHHHHHHhh
Q 019324          234 VMDKGTLDAIG---L-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVSNL  289 (343)
Q Consensus       234 V~~~~~l~~i~---~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~~~~~~~~  289 (343)
                      |+++...+...   . +.........+++++.++|||||.|++..+.. ...++...++.+
T Consensus       127 Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~  187 (290)
T 2xyq_A          127 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHF  187 (290)
T ss_dssp             EEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTE
T ss_pred             EEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHc
Confidence            99975422110   0 11122334578899999999999999965443 345666666543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.03  E-value=4.5e-10  Score=102.54  Aligned_cols=76  Identities=24%  Similarity=0.336  Sum_probs=66.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.+++++...  ++++++++|+.+.++ +.+||+|+++..++
T Consensus        49 ~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~--~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A           49 TKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY--NNIEIIWGDALKVDLNKLDFNKVVANLPYQ  125 (295)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC--SSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred             CCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC--CCeEEEECchhhCCcccCCccEEEEeCccc
Confidence            567899999999999999999985 48999999999999999998733  589999999998765 35799999987664

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.02  E-value=7.5e-10  Score=98.52  Aligned_cols=74  Identities=15%  Similarity=0.267  Sum_probs=61.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC--CCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~--~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++....  ++++++++|+.+.++.  ..| .|+++..+
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~--~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy  104 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPKNQSY-KIFGNIPY  104 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCSSCCC-EEEEECCG
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC--CCeEEEEChHHhCCcccCCCe-EEEEeCCc
Confidence            467899999999999999999987 58999999999999999987643  4899999999987654  345 56666554

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.01  E-value=4e-10  Score=111.38  Aligned_cols=124  Identities=16%  Similarity=0.122  Sum_probs=89.2

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc--------C--------CCcEEEEeCChHHHHHHHHHHHHcCCC-
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--------G--------FSDLTGVDYSEDAINLAQSLANRDGFS-  213 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~--------g--------~~~v~gvD~s~~~i~~a~~~~~~~~~~-  213 (343)
                      +..+++.++..  ...+|||.+||+|.++..+++.        +        ...++|+|+++.++..|+.++...|+. 
T Consensus       233 Vv~lmv~ll~p--~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  310 (544)
T 3khk_A          233 IVTLIVEMLEP--YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF  310 (544)
T ss_dssp             HHHHHHHHHCC--CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhc--CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            44455554432  2349999999999998877542        0        237999999999999999999888873 


Q ss_pred             ceEEEEccCCCCcc--CCCccEEEECccccccc-----------------------cCCCChhhHHHHHHHHhhccCCCc
Q 019324          214 CIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIG-----------------------LHPDGPLKRIMYWDSVSKLVAPGG  268 (343)
Q Consensus       214 ~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~-----------------------~~~~~~~~~~~~l~~~~~~LkpgG  268 (343)
                      ++.+.++|....+.  ...||+|++|.++..-.                       +.+.. ..-..++..+.+.|+|||
T Consensus       311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~-~~~~~Fl~~~l~~Lk~gG  389 (544)
T 3khk_A          311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTG-NANFAWMLHMLYHLAPTG  389 (544)
T ss_dssp             BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTT-CTHHHHHHHHHHTEEEEE
T ss_pred             ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCc-chhHHHHHHHHHHhccCc
Confidence            34447888766542  47899999998875321                       11111 122368899999999999


Q ss_pred             EEEEEecCC
Q 019324          269 LLVITSCNS  277 (343)
Q Consensus       269 ~lii~~~~~  277 (343)
                      ++.++.++.
T Consensus       390 r~aiVlP~g  398 (544)
T 3khk_A          390 SMALLLANG  398 (544)
T ss_dssp             EEEEEEETH
T ss_pred             eEEEEecch
Confidence            999987754

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.00  E-value=9.4e-12  Score=110.88  Aligned_cols=102  Identities=16%  Similarity=0.209  Sum_probs=77.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC--CCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~--~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++..  +.++++++++|+.+.++.  ++| .|+++..+
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py  103 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRY-KIVGNIPY  103 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEE-EEEEECCS
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccCCCc-EEEEeCCc
Confidence            467799999999999999999987 589999999999999988775  235899999999987653  578 77777544


Q ss_pred             cccccCCCChhhHHH----------HH----HHHhhccCCCcEEEEEe
Q 019324          241 DAIGLHPDGPLKRIM----------YW----DSVSKLVAPGGLLVITS  274 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~----------~l----~~~~~~LkpgG~lii~~  274 (343)
                      ....      .....          ++    +.+.++|+|||.+.+..
T Consensus       104 ~~~~------~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          104 HLST------QIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             SSCH------HHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             cccH------HHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            3210      11111          22    56888999999877654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.97  E-value=2.2e-09  Score=109.25  Aligned_cols=115  Identities=22%  Similarity=0.189  Sum_probs=85.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-------------------------------------------CCcEEEEeCChHH
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-------------------------------------------FSDLTGVDYSEDA  199 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-------------------------------------------~~~v~gvD~s~~~  199 (343)
                      .++.+|||.+||+|.+++.++..+                                           ...++|+|+++.|
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            567899999999999998877542                                           1379999999999


Q ss_pred             HHHHHHHHHHcCCCc-eEEEEccCCCCccC---CCccEEEECccccccccCCC-ChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          200 INLAQSLANRDGFSC-IKFLVDDVLDTKLE---RQFQLVMDKGTLDAIGLHPD-GPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       200 i~~a~~~~~~~~~~~-i~~~~~D~~~~~~~---~~fD~V~~~~~l~~i~~~~~-~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ++.|++|+...|+.+ ++|.++|+.+...+   ++||+|++|.++..- +... ........+.++.+.+.|||.+++.+
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~R-lg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt  347 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGER-LDSEPALIALHSLLGRIMKNQFGGWNLSLFS  347 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC----CCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcccc-ccchhHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence            999999999999864 99999999887432   389999999887421 1111 11222333455556667899999987


Q ss_pred             cCCC
Q 019324          275 CNST  278 (343)
Q Consensus       275 ~~~~  278 (343)
                      .+..
T Consensus       348 ~~~~  351 (703)
T 3v97_A          348 ASPD  351 (703)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            6543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.94  E-value=2.6e-10  Score=102.34  Aligned_cols=79  Identities=16%  Similarity=0.110  Sum_probs=65.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCCh-------HHHHHHHHHHHHcCCC-ceEEEEccCCCCc--cC---C
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE-------DAINLAQSLANRDGFS-CIKFLVDDVLDTK--LE---R  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~-------~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~--~~---~  229 (343)
                      .++.+|||+|||+|.++..++..|. +|+|+|+|+       .+++.++++...+++. +++++++|+.+..  ..   +
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence            4567999999999999999999875 899999999       9999999988777664 4999999998752  22   6


Q ss_pred             CccEEEECccccc
Q 019324          230 QFQLVMDKGTLDA  242 (343)
Q Consensus       230 ~fD~V~~~~~l~~  242 (343)
                      +||+|+++..+.+
T Consensus       161 ~fD~V~~dP~~~~  173 (258)
T 2r6z_A          161 KPDIVYLDPMYPE  173 (258)
T ss_dssp             CCSEEEECCCC--
T ss_pred             CccEEEECCCCCC
Confidence            8999999876644

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.93  E-value=3.4e-09  Score=95.55  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=64.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC--CCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~--~~fD~V~~~~~l  240 (343)
                      .++ +|||||||+|.++..|++.+ .+|+|+|+|+.+++.+++++..   .+++++++|+.+.+++  ..+|.|++|-.+
T Consensus        46 ~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy  120 (271)
T 3fut_A           46 FTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEVPQGSLLVANLPY  120 (271)
T ss_dssp             CCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGSCTTEEEEEEECS
T ss_pred             CCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhccCccEEEecCcc
Confidence            456 99999999999999999997 4899999999999999998762   4899999999988764  368999998766


Q ss_pred             cc
Q 019324          241 DA  242 (343)
Q Consensus       241 ~~  242 (343)
                      ..
T Consensus       121 ~i  122 (271)
T 3fut_A          121 HI  122 (271)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.92  E-value=2.1e-08  Score=90.93  Aligned_cols=109  Identities=21%  Similarity=0.416  Sum_probs=84.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHH-----cCCCceEEEEccCCCCcc--CCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR-----DGFSCIKFLVDDVLDTKL--ERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~-----~~~~~i~~~~~D~~~~~~--~~~fD~V  234 (343)
                      ..+++||-||.|.|..+..+++. +..+|+.||+++.+++.+++.+..     ...++++++.+|...+-.  .++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            56789999999999999999988 456899999999999999997643     122689999999998743  5789999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +.... +-.  .+....-...+++.+.++|+|||+++...
T Consensus       162 i~D~~-dp~--~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          162 ISDCT-DPI--GPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EESCC-CCC--CTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCC-CcC--CCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            98643 211  11111223468899999999999999853

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.92  E-value=2.5e-09  Score=95.70  Aligned_cols=75  Identities=20%  Similarity=0.323  Sum_probs=63.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~  237 (343)
                      .++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.+++++..  .++++++++|+.+.++     .++|| |++|
T Consensus        28 ~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           28 QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred             CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhccCCCeE-EEec
Confidence            567899999999999999999987 5899999999999999998865  2589999999999865     24677 7776


Q ss_pred             cccc
Q 019324          238 GTLD  241 (343)
Q Consensus       238 ~~l~  241 (343)
                      ..+.
T Consensus       104 lPY~  107 (255)
T 3tqs_A          104 LPYN  107 (255)
T ss_dssp             CCHH
T ss_pred             CCcc
Confidence            6553

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.86  E-value=2.4e-09  Score=101.75  Aligned_cols=76  Identities=12%  Similarity=0.036  Sum_probs=66.5

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc--CCCceEEEEccCCCCc-c--CCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTK-L--ERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~--~~~~i~~~~~D~~~~~-~--~~~fD~V~~~~  238 (343)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|++|+..+  |+.+++++++|+.+.. .  .++||+|+++.
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDP  171 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDP  171 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECC
Confidence            378999999999999999998864 9999999999999999999988  7778999999998852 1  35899999975


Q ss_pred             cc
Q 019324          239 TL  240 (343)
Q Consensus       239 ~l  240 (343)
                      ..
T Consensus       172 Pr  173 (410)
T 3ll7_A          172 AR  173 (410)
T ss_dssp             EE
T ss_pred             CC
Confidence            44

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.85  E-value=4e-09  Score=94.05  Aligned_cols=74  Identities=15%  Similarity=0.199  Sum_probs=60.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCC--ccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ--FQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~--fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+.+++.++++    +..+++++++|+.+.+++..  ...|++|..+
T Consensus        30 ~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~~~~~~vv~NlPy  105 (249)
T 3ftd_A           30 EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSLGKELKVVGNLPY  105 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGSCSSEEEEEECCT
T ss_pred             CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHccCCcEEEEECch
Confidence            46789999999999999999999656999999999999999987    22489999999999875421  2266666554

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.84  E-value=1.4e-08  Score=102.75  Aligned_cols=116  Identities=14%  Similarity=0.027  Sum_probs=82.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC----CCcEEEEeCChHHHHHH--HHHHHH----cCCCceEEEEccCCCCc--cCCC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLA--QSLANR----DGFSCIKFLVDDVLDTK--LERQ  230 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g----~~~v~gvD~s~~~i~~a--~~~~~~----~~~~~i~~~~~D~~~~~--~~~~  230 (343)
                      .++.+|||.|||+|.++..+++..    ...++|+|+++.+++.|  +.++..    .+.....+...|+....  ....
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            357899999999999999998762    13799999999999999  555543    23333466667776633  3468


Q ss_pred             ccEEEECccccccccC------------------C----CChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          231 FQLVMDKGTLDAIGLH------------------P----DGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~------------------~----~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ||+|++|.++......                  +    ........+++.+.++|+|||++.+..++.-
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~  469 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY  469 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence            9999999887321000                  0    0001234578899999999999999887664

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.83  E-value=3.4e-08  Score=84.83  Aligned_cols=98  Identities=12%  Similarity=0.067  Sum_probs=75.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC---CceEEEEccCCCC--------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDT--------------  225 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~---~~i~~~~~D~~~~--------------  225 (343)
                      .+.++|||+|||  ..+..+++....+|+.+|.++...+.++++++..|+   .+++++.+|+.+.              
T Consensus        29 ~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           29 EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            457899999985  677777775235999999999999999999999884   4799999997643              


Q ss_pred             -c--------c--CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          226 -K--------L--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       226 -~--------~--~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                       +        .  .++||+|+..+-.            ...++..+.++|+|||++++..
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~k------------~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGRF------------RVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSSS------------HHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCCC------------chhHHHHHHHhcCCCeEEEEeC
Confidence             1        1  2689999976521            1245567789999999998743

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.82  E-value=5.2e-08  Score=96.05  Aligned_cols=161  Identities=16%  Similarity=0.161  Sum_probs=106.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc----C----------CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g----------~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-  227 (343)
                      .++.+|+|.+||+|.++..+.+.    .          ...++|+|+++.+...|+.|+..+|.....+..+|....+. 
T Consensus       216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~  295 (530)
T 3ufb_A          216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR  295 (530)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred             CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence            55779999999999998877642    1          13699999999999999999988888667788888776542 


Q ss_pred             ----CCCccEEEECccccccc---------cCCCChhhHHHHHHHHhhccC-------CCcEEEEEecCCCh--HHHHHH
Q 019324          228 ----ERQFQLVMDKGTLDAIG---------LHPDGPLKRIMYWDSVSKLVA-------PGGLLVITSCNSTK--DELVHE  285 (343)
Q Consensus       228 ----~~~fD~V~~~~~l~~i~---------~~~~~~~~~~~~l~~~~~~Lk-------pgG~lii~~~~~~~--~~~~~~  285 (343)
                          ...||+|++|.++..-.         ........-..++..+.+.||       |||++.++.++...  ...-..
T Consensus       296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~  375 (530)
T 3ufb_A          296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISAR  375 (530)
T ss_dssp             GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHH
T ss_pred             hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHH
Confidence                35799999998874220         001111223457788888776       79999988775421  111112


Q ss_pred             HHhhhhccccccccchhhhhcccCCCCeeEecccccCCcccccCccCeeEeEEEEeeC
Q 019324          286 VSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN  343 (343)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~p~~~f~g~~g~~v~~v~f~r~  343 (343)
                      ++++-...                   +. +..+-.+|.-.|.+..|..++.+.|.|+
T Consensus       376 iRk~Lle~-------------------~~-l~aII~LP~~~F~~~tgi~t~Il~~~K~  413 (530)
T 3ufb_A          376 IKEELLKN-------------------FN-LHTIVRLPEGVFAPYTDIAGNLLFFDRS  413 (530)
T ss_dssp             HHHHHHHH-------------------SE-EEEEEECCTTTTTTTCCCCEEEEEEESS
T ss_pred             HHHHHhhc-------------------CE-EEEEEECCcccCcCCCCCcEEEEEEECC
Confidence            22211111                   12 2233346777777667888888888763

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.82  E-value=1.5e-08  Score=94.78  Aligned_cols=129  Identities=15%  Similarity=0.051  Sum_probs=97.0

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCC------CceEEEEccCCCCc--cCCCc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGF------SCIKFLVDDVLDTK--LERQF  231 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~------~~i~~~~~D~~~~~--~~~~f  231 (343)
                      ...++.+|||+++|.|.-+..|++.+.. .|+++|+++.-++.+++++...+.      .++.+...|...+.  ..+.|
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f  224 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY  224 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence            4478899999999999999999987533 799999999999999999987654      36888888887764  35789


Q ss_pred             cEEEECccccc---ccc--CCCC-----hh-------hHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          232 QLVMDKGTLDA---IGL--HPDG-----PL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       232 D~V~~~~~l~~---i~~--~~~~-----~~-------~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                      |.|++......   ..+  +++.     ..       ....+|.++.++|||||+|+.++|.-..+|.-..+..|
T Consensus       225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~  299 (359)
T 4fzv_A          225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGA  299 (359)
T ss_dssp             EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHH
T ss_pred             CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHH
Confidence            99998655433   111  1111     11       12367889999999999999999988776655544433

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.80  E-value=6.1e-09  Score=95.36  Aligned_cols=75  Identities=11%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cC----CCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE----RQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~----~~fD~V~  235 (343)
                      .++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|++++..++ .+++++++|+.+++  ..    .+||.|+
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl  103 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGIL  103 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEEE
Confidence            567899999999999999999873 3489999999999999999998877 68999999988764  11    5799999


Q ss_pred             ECc
Q 019324          236 DKG  238 (343)
Q Consensus       236 ~~~  238 (343)
                      ++.
T Consensus       104 ~D~  106 (301)
T 1m6y_A          104 MDL  106 (301)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            754

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.78  E-value=7.1e-09  Score=103.35  Aligned_cols=103  Identities=12%  Similarity=0.165  Sum_probs=75.9

Q ss_pred             CCCeEEEEccCccHHHHHHHh---cCCC--cEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEEC
Q 019324          164 SSWSVLDIGTGNGLLLQELSK---QGFS--DLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDK  237 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~---~g~~--~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~  237 (343)
                      +...|||+|||+|-+....++   .+..  +|+|||-|+. ...+++....++. .+|+++++|+++..+++++|+|++-
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSE  435 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSE  435 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECC
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEE
Confidence            346899999999988444443   3323  6899999985 4567777777777 4799999999999989999999973


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                       .+..+.++.    ....++....|.|||||+++=
T Consensus       436 -wMG~fLl~E----~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          436 -LLGSFADNE----LSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             -CCBTTBGGG----CHHHHHHHHGGGEEEEEEEES
T ss_pred             -cCccccccc----CCHHHHHHHHHhcCCCcEEcc
Confidence             333332211    223567888999999998753

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.73  E-value=1.5e-08  Score=91.87  Aligned_cols=73  Identities=15%  Similarity=0.133  Sum_probs=59.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCc----EEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC-------Cc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSD----LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER-------QF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~----v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~-------~f  231 (343)
                      .++.+|||||||+|.++..|++.+. .    |+|+|+|+.+++.++++.    ..+++++++|+.+.+++.       ..
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~~~~~~~~~~~  115 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFGSIARPGDEPS  115 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGGGGSCSSSSCC
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChhHhcccccCCc
Confidence            5678999999999999999999854 4    999999999999999984    248999999999886532       23


Q ss_pred             cEEEECccc
Q 019324          232 QLVMDKGTL  240 (343)
Q Consensus       232 D~V~~~~~l  240 (343)
                      ..|++|-.+
T Consensus       116 ~~vv~NlPY  124 (279)
T 3uzu_A          116 LRIIGNLPY  124 (279)
T ss_dssp             EEEEEECCH
T ss_pred             eEEEEccCc
Confidence            467776554

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.70  E-value=7.3e-09  Score=92.27  Aligned_cols=123  Identities=15%  Similarity=0.107  Sum_probs=77.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++. +...++|+|++..+....... ...+. ++..+..++....+ +++||+|+|....
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv~~l~~~~~DlVlsD~ap  150 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDIHRLEPVKCDTLLCDIGE  150 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEeccceehhcCCCCccEEEecCcc
Confidence            56789999999999999998876 555789999984431100000 00111 45556666543333 5789999998755


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCC-cEEEEEecC--C-ChHHHHHHHHh
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSCN--S-TKDELVHEVSN  288 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~~--~-~~~~~~~~~~~  288 (343)
                      + ...+..+......+++.+.++|+|| |.|++-.+.  . ...++...++.
T Consensus       151 n-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~  201 (277)
T 3evf_A          151 S-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQR  201 (277)
T ss_dssp             C-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHH
T ss_pred             C-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHH
Confidence            4 2211111112224578889999999 999996665  2 33455555553

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.64  E-value=1.1e-08  Score=91.41  Aligned_cols=73  Identities=15%  Similarity=0.110  Sum_probs=58.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCc--EEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCC------CccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER------QFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~--v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~------~fD~V  234 (343)
                      .++.+|||||||+|.++. +.. + .+  |+|+|+|+.+++.++++....  ++++++++|+.+.++..      ..+.|
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~~~~~~v   94 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRV   94 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEE
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhcccCCceEE
Confidence            567899999999999999 654 4 36  999999999999999877543  48999999999876422      34688


Q ss_pred             EECccc
Q 019324          235 MDKGTL  240 (343)
Q Consensus       235 ~~~~~l  240 (343)
                      ++|..+
T Consensus        95 vsNlPY  100 (252)
T 1qyr_A           95 FGNLPY  100 (252)
T ss_dssp             EEECCT
T ss_pred             EECCCC
Confidence            887665

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.62  E-value=4.4e-08  Score=97.70  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=73.4

Q ss_pred             CCeEEEEccCccHHHHHHHhc----C----------CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc--
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL--  227 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~----g----------~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~--  227 (343)
                      ...|||+|||+|.++...+..    +          ..+|+|||.|+.++..++.+.. ++. .+|+++.+|+++..+  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            468999999999996432221    2          1289999999988877666554 565 369999999999876  


Q ss_pred             ----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          228 ----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       228 ----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                          .++.|+|++- .+..+.   + .+....+|..+.+.|||||+++=
T Consensus       489 ~~~~~ekVDIIVSE-lmGsfl---~-nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          489 KDRGFEQPDIIVSE-LLGSFG---D-NELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             HHTTCCCCSEEEEC-CCBTTB---G-GGSHHHHHHTTGGGSCTTCEEES
T ss_pred             ccCCCCcccEEEEe-cccccc---c-hhccHHHHHHHHHhCCCCcEEEC
Confidence                7899999983 222221   1 12233567888899999998754

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.58  E-value=2.5e-07  Score=86.50  Aligned_cols=112  Identities=21%  Similarity=0.251  Sum_probs=81.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-----CC---CceEEEEccCCCCc-----cCC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-----GF---SCIKFLVDDVLDTK-----LER  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-----~~---~~i~~~~~D~~~~~-----~~~  229 (343)
                      .++++||-||.|.|..+..+++.+..+|+.||+++.+++.|++.+...     ..   ++++++.+|...+-     ..+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            457899999999999999999986679999999999999999875321     11   35899999987653     246


Q ss_pred             CccEEEECccccccccCCC---ChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPD---GPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~---~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +||+|+....-....-.|.   ...-...+++.+.++|+|||+++...
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            8999997532111111111   11233567899999999999998853

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.54  E-value=6.5e-08  Score=86.47  Aligned_cols=109  Identities=13%  Similarity=0.069  Sum_probs=73.6

Q ss_pred             CeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-------cC-C-CceEEEEccCCCCc--cCCCccEE
Q 019324          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG-F-SCIKFLVDDVLDTK--LERQFQLV  234 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-------~~-~-~~i~~~~~D~~~~~--~~~~fD~V  234 (343)
                      .+|||+|||+|..+..++..|. +|+++|.++.++..++++++.       ++ + .+++++++|..+..  ....||+|
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV  168 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence            7999999999999999999976 899999999887777665432       22 2 47999999987642  23579999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                      +++..+..-    ..  .  ..+++..++|++.+     .+.....++++...+
T Consensus       169 ~lDP~y~~~----~~--s--aavkk~~~~lr~l~-----~~~~~~~~ll~~a~~  209 (258)
T 2oyr_A          169 YLDPMFPHK----QK--S--ALVKKEMRVFQSLV-----GPDLDADGLLEPARL  209 (258)
T ss_dssp             EECCCCCCC----CC---------HHHHHHHHHS-----CCCTTGGGGHHHHHH
T ss_pred             EEcCCCCCc----cc--c--hHHHHHHHHHHHhh-----cCCccHHHHHHHHHH
Confidence            998776432    11  1  23345555555544     234445555555543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.52  E-value=1.4e-08  Score=90.50  Aligned_cols=122  Identities=10%  Similarity=-0.010  Sum_probs=76.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc--cCCCCccCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD--DVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~--D~~~~~~~~~fD~V~~~~~  239 (343)
                      .++.+|||||||.|.++..+++. +...|+|+|++..+...+.. ....+ .++..+..  |+..+ ...++|+|+|...
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g-~~ii~~~~~~dv~~l-~~~~~DvVLSDmA  165 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLG-WNLIRFKDKTDVFNM-EVIPGDTLLCDIG  165 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCGGGS-CCCCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCC-CceEEeeCCcchhhc-CCCCcCEEEecCc
Confidence            67789999999999999998865 65689999998653222211 00112 13444443  33222 2578999999876


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCC--cEEEEEecC---CChHHHHHHHHh
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPG--GLLVITSCN---STKDELVHEVSN  288 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~Lkpg--G~lii~~~~---~~~~~~~~~~~~  288 (343)
                      .+ ...+..+......+++-+.++|+||  |.|++-.+.   ....++...++.
T Consensus       166 pn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~  218 (282)
T 3gcz_A          166 ES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQL  218 (282)
T ss_dssp             CC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             cC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHH
Confidence            65 3211111122234578889999999  999996665   234456666653

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.49  E-value=7.1e-08  Score=77.57  Aligned_cols=60  Identities=20%  Similarity=0.258  Sum_probs=50.4

Q ss_pred             CCCCeEEEEccCcc-HHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC--CCccEEEECc
Q 019324          163 LSSWSVLDIGTGNG-LLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G-~~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~--~~fD~V~~~~  238 (343)
                      .++.+|||||||.| ..+..|++ .|+ .|+++|+++.+++               +++.|+.+....  ..||+|++..
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------~v~dDiF~P~~~~Y~~~DLIYsir   97 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------IVRDDITSPRMEIYRGAALIYSIR   97 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------EECCCSSSCCHHHHTTEEEEEEES
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------eEEccCCCCcccccCCcCEEEEcC
Confidence            45689999999999 79999997 776 8999999988766               888999886553  5899998743

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.41  E-value=9.4e-07  Score=82.99  Aligned_cols=114  Identities=12%  Similarity=0.069  Sum_probs=71.7

Q ss_pred             CCCeEEEEccCccHHHHHHHhc------------C---C-CcEEEEeCChHHHHHHHHHHHHcC-----------C-Cce
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ------------G---F-SDLTGVDYSEDAINLAQSLANRDG-----------F-SCI  215 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~------------g---~-~~v~gvD~s~~~i~~a~~~~~~~~-----------~-~~i  215 (343)
                      ++.+|+|+|||+|..+..++..            +   . -+|+..|+..+.-...=+.+....           . .+-
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence            3679999999999988877331            1   1 167777776665433333222110           0 011


Q ss_pred             EEEEccCCCC----ccCCCccEEEECccccccccCCCCh-------------------------------hhHHHHHHHH
Q 019324          216 KFLVDDVLDT----KLERQFQLVMDKGTLDAIGLHPDGP-------------------------------LKRIMYWDSV  260 (343)
Q Consensus       216 ~~~~~D~~~~----~~~~~fD~V~~~~~l~~i~~~~~~~-------------------------------~~~~~~l~~~  260 (343)
                      .|..+....+    -+++++|+|+++.+++++.-.|...                               .+...+|+..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            1333322221    2368999999999999986333211                               1556678999


Q ss_pred             hhccCCCcEEEEEecCC
Q 019324          261 SKLVAPGGLLVITSCNS  277 (343)
Q Consensus       261 ~~~LkpgG~lii~~~~~  277 (343)
                      .+.|+|||+++++....
T Consensus       212 a~eL~pGG~mvl~~~gr  228 (374)
T 3b5i_A          212 AAEVKRGGAMFLVCLGR  228 (374)
T ss_dssp             HHHEEEEEEEEEEEEEC
T ss_pred             HHHhCCCCEEEEEEecC
Confidence            99999999999976644

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.36  E-value=1.5e-06  Score=78.41  Aligned_cols=106  Identities=11%  Similarity=0.006  Sum_probs=80.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc----C--CCcEEEEeCCh--------------------------HHHHHHHHHHHHc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSE--------------------------DAINLAQSLANRD  210 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g--~~~v~gvD~s~--------------------------~~i~~a~~~~~~~  210 (343)
                      ..+..|||+||..|..+..++..    +  ..+|+++|..+                          ..++.++++++..
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            45779999999999988877643    1  34899999642                          1477889999998


Q ss_pred             CC--CceEEEEccCCCCc--c-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          211 GF--SCIKFLVDDVLDTK--L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       211 ~~--~~i~~~~~D~~~~~--~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      |+  ++++++.+|+.+.-  . .++||+|+...-.         ......+++.+...|+|||++++.....
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~---------y~~~~~~Le~~~p~L~pGGiIv~DD~~~  247 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL---------YESTWDTLTNLYPKVSVGGYVIVDDYMM  247 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS---------HHHHHHHHHHHGGGEEEEEEEEESSCTT
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc---------cccHHHHHHHHHhhcCCCEEEEEcCCCC
Confidence            87  58999999987632  2 4679998865421         2334578899999999999999966543

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.24  E-value=3e-06  Score=75.71  Aligned_cols=118  Identities=13%  Similarity=0.166  Sum_probs=74.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+||||||++|.++..++.. |...|+|+|+-..--+.-+ ..+..+..-+.|+.+ |+..... .++|+|+|.-. 
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~l~~-~~~D~ivcDig-  169 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFYRPS-ECCDTLLCDIG-  169 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTSSCC-CCCSEEEECCC-
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhhCCC-CCCCEEEEECc-
Confidence            67789999999999999977766 6668999999755211000 000112123778877 8766654 67999998643 


Q ss_pred             cccccCCCCh---hhHHHHHHHHhhccCCC-cEEEEEecCCChHHHHHHH
Q 019324          241 DAIGLHPDGP---LKRIMYWDSVSKLVAPG-GLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       241 ~~i~~~~~~~---~~~~~~l~~~~~~Lkpg-G~lii~~~~~~~~~~~~~~  286 (343)
                      +.   ++...   ......|+-+.+.|++| |-++|-...+-..+..+.+
T Consensus       170 eS---s~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l  216 (321)
T 3lkz_A          170 ES---SSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKM  216 (321)
T ss_dssp             CC---CSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHH
T ss_pred             cC---CCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHH
Confidence            21   11211   12245777788999999 8888855555334433333

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.23  E-value=5.2e-07  Score=80.96  Aligned_cols=122  Identities=10%  Similarity=-0.031  Sum_probs=73.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~~~~l  240 (343)
                      .++.+||||||++|.++..+++. +...|+|+|+...+...... ....+ .++.....++.... ....+|+|+|....
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~di~~l~~~~~DlVlsD~AP  157 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSNVFTMPTEPSDTLLCDIGE  157 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC-CceEEeecCceeeecCCCCcCEEeecCcC
Confidence            67889999999999999999986 55589999997542110000 00001 13333333222222 24689999997655


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCC-cEEEEEecC--C-ChHHHHHHHH
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSCN--S-TKDELVHEVS  287 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~~--~-~~~~~~~~~~  287 (343)
                      + ...+..+......+++-+.++|+|| |.|++-.+.  . ...++...++
T Consensus       158 n-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk  207 (300)
T 3eld_A          158 S-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQ  207 (300)
T ss_dssp             C-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHH
Confidence            4 3211111112234578889999999 999996655  2 3345555555

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.22  E-value=1.2e-06  Score=75.81  Aligned_cols=113  Identities=13%  Similarity=0.141  Sum_probs=74.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+||++|.++..++.. |...|+|+|+-..-.+.- ...+..|...++|.++ |+..... .++|+|+|...=
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~~~-~~~DtllcDIge  154 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYLPP-EKCDTLLCDIGE  154 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGCCC-CCCSEEEECCCC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeecCC-ccccEEEEecCC
Confidence            67889999999999999977776 666899999975532100 0112334456999999 9765544 679999995321


Q ss_pred             cccccCCCCh---hhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324          241 DAIGLHPDGP---LKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  282 (343)
Q Consensus       241 ~~i~~~~~~~---~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  282 (343)
                      .    ++...   ....+.|+-+.+.|++ |-+++-...+...+.
T Consensus       155 S----s~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v  194 (267)
T 3p8z_A          155 S----SPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTV  194 (267)
T ss_dssp             C----CSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHH
T ss_pred             C----CCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhH
Confidence            1    11111   1224577888899999 788885444444333

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.18  E-value=1.3e-06  Score=78.06  Aligned_cols=104  Identities=17%  Similarity=0.253  Sum_probs=69.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-------CC------CcEEEEeCCh---HHHH-----------HHHHHHHHc-----
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-------GF------SDLTGVDYSE---DAIN-----------LAQSLANRD-----  210 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-------g~------~~v~gvD~s~---~~i~-----------~a~~~~~~~-----  210 (343)
                      .+..+|||+|||+|..+..+++.       +.      .+++++|..|   ..+.           .+++++...     
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34579999999999887775442       11      2799999887   4433           556655431     


Q ss_pred             ---------CCCceEEEEccCCCCc--cC----CCccEEEECccccccccCCCChhh--HHHHHHHHhhccCCCcEEEE
Q 019324          211 ---------GFSCIKFLVDDVLDTK--LE----RQFQLVMDKGTLDAIGLHPDGPLK--RIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       211 ---------~~~~i~~~~~D~~~~~--~~----~~fD~V~~~~~l~~i~~~~~~~~~--~~~~l~~~~~~LkpgG~lii  272 (343)
                               +..+++++.+|+.+..  .+    ..||+|+..+.      .+....+  ...+++.+.++|+|||+|+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~f------sp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGF------APAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSS------CTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCC------CcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                     1136889999987732  12    27999997541      1111111  24688999999999999885

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.16  E-value=5.3e-06  Score=77.99  Aligned_cols=112  Identities=12%  Similarity=0.019  Sum_probs=74.9

Q ss_pred             CCeEEEEccCccHHHHHHHhc------------------CCCcEEEEeCC-----------hHHHHHHHHHHHHcCC-Cc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ------------------GFSDLTGVDYS-----------EDAINLAQSLANRDGF-SC  214 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~------------------g~~~v~gvD~s-----------~~~i~~a~~~~~~~~~-~~  214 (343)
                      ..+|+|+||++|..+..+...                  +.-+|+..|+.           +.+.+.+++.   .|. .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            578999999999888876653                  11168888887           4444443222   221 13


Q ss_pred             eEEEEccCCCC----ccCCCccEEEECccccccccCCCChh--------------------------------hHHHHHH
Q 019324          215 IKFLVDDVLDT----KLERQFQLVMDKGTLDAIGLHPDGPL--------------------------------KRIMYWD  258 (343)
Q Consensus       215 i~~~~~D~~~~----~~~~~fD~V~~~~~l~~i~~~~~~~~--------------------------------~~~~~l~  258 (343)
                      -.|+.+....+    -+++++|+|+++.+++++.-.|....                                +...+|+
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45666655443    13689999999999999864442211                                2234578


Q ss_pred             HHhhccCCCcEEEEEecCCCh
Q 019324          259 SVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       259 ~~~~~LkpgG~lii~~~~~~~  279 (343)
                      ...+.|+|||+++++......
T Consensus       210 ~Ra~eL~pGG~mvl~~~gr~~  230 (384)
T 2efj_A          210 IHSEELISRGRMLLTFICKED  230 (384)
T ss_dssp             HHHHHEEEEEEEEEEEECCCT
T ss_pred             HHHHHhccCCeEEEEEecCCC
Confidence            889999999999998766544

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.11  E-value=2e-05  Score=73.29  Aligned_cols=96  Identities=14%  Similarity=0.031  Sum_probs=67.2

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      +.++.+|||+||++|.++..++++|. +|+|||+.+-.-..     .  ..+++.++++|.....+ ...+|+|+|..+.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l-----~--~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSL-----M--DTGQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHH-----H--TTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhh-----c--cCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            36789999999999999999999975 89999987532211     1  12589999999998876 4689999996543


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .        +.....++......+..++.++..
T Consensus       281 ~--------p~~~~~l~~~wl~~~~~~~aI~~l  305 (375)
T 4auk_A          281 K--------PAKVAALMAQWLVNGWCRETIFNL  305 (375)
T ss_dssp             C--------HHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred             C--------hHHhHHHHHHHHhccccceEEEEE
Confidence            2        233334445544444444554443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.09  E-value=1.8e-06  Score=75.89  Aligned_cols=118  Identities=12%  Similarity=0.115  Sum_probs=67.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+||+.|.++..+++. +...|.|.++.... ..........|+.-+.|+++ |+.+.. +.++|+|+|...-
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~-~~~~DvVLSDMAP  149 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKP-SEISDTLLCDIGE  149 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSC-CCCCSEEEECCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCC-CCCCCEEEeCCCC
Confidence            67899999999999999999987 22234455444321 00000000012112355557 998743 4579999996432


Q ss_pred             cccccCCC-ChhhHHHHHHHHhhccCCCc-EEEEEecCCChHHHHH
Q 019324          241 DAIGLHPD-GPLKRIMYWDSVSKLVAPGG-LLVITSCNSTKDELVH  284 (343)
Q Consensus       241 ~~i~~~~~-~~~~~~~~l~~~~~~LkpgG-~lii~~~~~~~~~~~~  284 (343)
                      . -. ++. +.......|+-+.++|+||| .|++=.+.....++.+
T Consensus       150 n-SG-~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~  193 (269)
T 2px2_A          150 S-SP-SAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIE  193 (269)
T ss_dssp             C-CS-CHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHH
T ss_pred             C-CC-ccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHH
Confidence            2 11 000 01111225677789999999 8998666654455544

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.05  E-value=5.7e-06  Score=74.11  Aligned_cols=70  Identities=11%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------CCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------~~~fD~V~~  236 (343)
                      .++..+||.+||.|..+..+++.+ .+|+|+|.++.+++.+++ +..   +++.++++|+.++..      .+++|.|++
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~   95 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALGVERVDGILA   95 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcCCCCcCEEEe
Confidence            568899999999999999999984 489999999999999998 643   489999999988641      257999996


Q ss_pred             C
Q 019324          237 K  237 (343)
Q Consensus       237 ~  237 (343)
                      .
T Consensus        96 D   96 (285)
T 1wg8_A           96 D   96 (285)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.95  E-value=1.8e-05  Score=72.59  Aligned_cols=84  Identities=17%  Similarity=0.090  Sum_probs=62.6

Q ss_pred             ccccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc
Q 019324          149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (343)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~  226 (343)
                      +-+.+++++.+. ..++..++|..||.|..+..+++. + ..+|+|+|.++.+++.++ ++  .. .++.+++++..++.
T Consensus        43 pVLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~~-~Rv~lv~~nF~~l~  117 (347)
T 3tka_A           43 TVLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--DD-PRFSIIHGPFSALG  117 (347)
T ss_dssp             CTTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--CC-TTEEEEESCGGGHH
T ss_pred             cccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--cC-CcEEEEeCCHHHHH
Confidence            334444444443 267889999999999999999987 3 348999999999999995 43  22 58999999987763


Q ss_pred             c-------CCCccEEEEC
Q 019324          227 L-------ERQFQLVMDK  237 (343)
Q Consensus       227 ~-------~~~fD~V~~~  237 (343)
                      .       .+++|.|+.+
T Consensus       118 ~~L~~~g~~~~vDgILfD  135 (347)
T 3tka_A          118 EYVAERDLIGKIDGILLD  135 (347)
T ss_dssp             HHHHHTTCTTCEEEEEEE
T ss_pred             HHHHhcCCCCcccEEEEC
Confidence            1       2368988865

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.89  E-value=1.2e-05  Score=74.92  Aligned_cols=114  Identities=14%  Similarity=0.130  Sum_probs=78.9

Q ss_pred             CCCeEEEEccCccHHHHHHHhc------------C---C--CcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ------------G---F--SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDT  225 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~------------g---~--~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~  225 (343)
                      ...+|+|+||++|..++.+...            +   .  -+|+..|+..+....+-+.+..... .+-.|..+....+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3568999999999766654443            1   1  1799999999888887776543110 0234555544432


Q ss_pred             ----ccCCCccEEEECccccccccCCCC--------------------------hhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          226 ----KLERQFQLVMDKGTLDAIGLHPDG--------------------------PLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       226 ----~~~~~fD~V~~~~~l~~i~~~~~~--------------------------~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                          -+++++|+|+++.+++++.--|..                          ..+...+|+...+.|+|||+++++..
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence                236899999999999998533321                          13556778999999999999999755


Q ss_pred             CC
Q 019324          276 NS  277 (343)
Q Consensus       276 ~~  277 (343)
                      ..
T Consensus       211 gr  212 (359)
T 1m6e_X          211 GR  212 (359)
T ss_dssp             EC
T ss_pred             cC
Confidence            33

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.82  E-value=2.6e-05  Score=71.01  Aligned_cols=47  Identities=26%  Similarity=0.237  Sum_probs=43.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~  210 (343)
                      .++..|||++||+|..+..++..|. +++|+|+++.+++.|++++...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            5788999999999999999999875 8999999999999999998764

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.53  E-value=0.00048  Score=63.93  Aligned_cols=75  Identities=13%  Similarity=0.181  Sum_probs=58.4

Q ss_pred             CCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---C-CCccEEEECc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---E-RQFQLVMDKG  238 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---~-~~fD~V~~~~  238 (343)
                      ..+|||+.||.|.++..+...|  +..|.++|+++.+++..+.|+.     +..++++|+.+...   . ..+|+|+...
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            3589999999999999999988  4479999999999999999873     44578899988752   1 2699999987


Q ss_pred             cccccc
Q 019324          239 TLDAIG  244 (343)
Q Consensus       239 ~l~~i~  244 (343)
                      ....+.
T Consensus        77 PCq~fS   82 (343)
T 1g55_A           77 PCQPFT   82 (343)
T ss_dssp             C-----
T ss_pred             CCcchh
Confidence            755553

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.46  E-value=0.00028  Score=63.14  Aligned_cols=109  Identities=10%  Similarity=-0.046  Sum_probs=81.9

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-----ccCCCccEEEECcc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLERQFQLVMDKGT  239 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-----~~~~~fD~V~~~~~  239 (343)
                      +..+||+-+|+|.+++.++..+ .+++.+|.++..++..++|+...  .+++++..|....     +...+||+|+....
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP  168 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS  168 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred             CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence            5578999999999999999965 69999999999999999998753  4799999996542     12357999999776


Q ss_pred             ccccccCCCChhhHHHHHHHHhh--ccCCCcEEEEEecCCChHHHH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSK--LVAPGGLLVITSCNSTKDELV  283 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~--~LkpgG~lii~~~~~~~~~~~  283 (343)
                      +..-       ......++.+.+  .+.|+|++++-.|.-...+..
T Consensus       169 Ye~k-------~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~  207 (283)
T 2oo3_A          169 YERK-------EEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTE  207 (283)
T ss_dssp             CCST-------THHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHH
T ss_pred             CCCC-------cHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHH
Confidence            6421       233444455544  457999999977766655443

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.43  E-value=0.00046  Score=64.85  Aligned_cols=73  Identities=18%  Similarity=0.168  Sum_probs=61.2

Q ss_pred             CeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---------CCCccEEEE
Q 019324          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQFQLVMD  236 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------~~~fD~V~~  236 (343)
                      .++||+.||.|.++..+.+.|+..+.++|+++.+++..+.|.     ++..++++|+.+...         ...+|+|+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g   77 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG   77 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence            489999999999999999999877889999999999999875     367788999988642         357999998


Q ss_pred             Ccccccc
Q 019324          237 KGTLDAI  243 (343)
Q Consensus       237 ~~~l~~i  243 (343)
                      ......+
T Consensus        78 gpPCQ~f   84 (376)
T 3g7u_A           78 GPPCQGF   84 (376)
T ss_dssp             CCCCCTT
T ss_pred             cCCCCCc
Confidence            7765544

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.39  E-value=0.00095  Score=59.66  Aligned_cols=116  Identities=11%  Similarity=0.086  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcc------CccHHHHH-HHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEE
Q 019324          163 LSSWSVLDIGT------GNGLLLQE-LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGc------G~G~~~~~-la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~  235 (343)
                      ..+.+|||+|+      -.|..... +...| ..|+++|+.+-..           ... .++++|+.......+||+|+
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~VLr~~~p~g-~~VVavDL~~~~s-----------da~-~~IqGD~~~~~~~~k~DLVI  174 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTG-TLLVDSDLNDFVS-----------DAD-STLIGDCATVHTANKWDLII  174 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHSCTT-CEEEEEESSCCBC-----------SSS-EEEESCGGGEEESSCEEEEE
T ss_pred             cCCCEEEeCCCCCCCCCCCcHHHHHHhCCCC-cEEEEeeCccccc-----------CCC-eEEEccccccccCCCCCEEE
Confidence            45889999996      66764222 21122 2899999986431           113 45999987765568999999


Q ss_pred             ECcccccccc-CC---CChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH-Hhhhh
Q 019324          236 DKGTLDAIGL-HP---DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV-SNLSQ  291 (343)
Q Consensus       236 ~~~~l~~i~~-~~---~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~-~~~~~  291 (343)
                      +...-..... ..   ....-.+..++-+.++|+|||.|++=.+.....+.+..+ +.|..
T Consensus       175 SDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lrk~F~~  235 (344)
T 3r24_A          175 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSW  235 (344)
T ss_dssp             ECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEE
T ss_pred             ecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHHhhCCe
Confidence            8632211110 11   122345667788899999999999965555444434333 34443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.28  E-value=0.00024  Score=63.25  Aligned_cols=48  Identities=25%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~  211 (343)
                      .++..|||.+||+|..+....+.|. +++|+|+++.+++.+++++...+
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcc
Confidence            6788999999999999999999875 89999999999999999987554

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.19  E-value=0.0012  Score=60.70  Aligned_cols=101  Identities=10%  Similarity=0.086  Sum_probs=71.1

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECcccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~  241 (343)
                      .+.++||+.||.|.++..+...|+..+.++|+++.+++..+.|+...     .  .+|+.+...  -..+|+|+......
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~--~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P--EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C--BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C--cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            35799999999999999999999878999999999999999987421     1  578877643  23699999887766


Q ss_pred             ccccCC------CChhhHHHHHHHHhhccCCCcEEEE
Q 019324          242 AIGLHP------DGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       242 ~i~~~~------~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      .+..-.      +....+..-+-++.+.++|. ++++
T Consensus        83 ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~-~~~~  118 (327)
T 2c7p_A           83 AFSISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFM  118 (327)
T ss_dssp             TTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEE
T ss_pred             CcchhcccCCCcchhhHHHHHHHHHHHhccCc-EEEE
Confidence            654311      11112222234455567887 4444

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.05  E-value=0.0073  Score=54.64  Aligned_cols=106  Identities=17%  Similarity=0.187  Sum_probs=75.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCc--EEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~--v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~  235 (343)
                      ..+.+++|+.||.|.++..+.+.|+..  |.++|+++.+++..+.|.     +...++.+|+.+...     .+.+|+++
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~Dll~   88 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQEWGPFDLVI   88 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcccCCcCEEE
Confidence            556799999999999999999998854  699999999999888775     345678899988753     14799999


Q ss_pred             ECccccccccCC-------CChhhHHHHHHHHhhccCCC-c-----EEEEE
Q 019324          236 DKGTLDAIGLHP-------DGPLKRIMYWDSVSKLVAPG-G-----LLVIT  273 (343)
Q Consensus       236 ~~~~l~~i~~~~-------~~~~~~~~~l~~~~~~Lkpg-G-----~lii~  273 (343)
                      .......++.-.       +....+..-+-++.+.++|. |     ++++.
T Consensus        89 ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~E  139 (295)
T 2qrv_A           89 GGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFE  139 (295)
T ss_dssp             ECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEE
T ss_pred             ecCCCccccccCccccccccccchhHHHHHHHHHHhCcccccCCccEEEEE
Confidence            887666554321       11112222334455666887 2     66664

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.05  E-value=0.0028  Score=58.09  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=71.9

Q ss_pred             eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECccccccc
Q 019324          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~  244 (343)
                      +|||+.||.|.++..+.+.|+.-+.++|+++.+++..+.|..      -.++.+|+.+...  -...|+++.......+.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS   75 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEFPKCDGIIGGPPSQSWS   75 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGSCCCSEEECCCCGGGTE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhCCcccEEEecCCCCCcC
Confidence            799999999999999999898788999999999999988752      3578899988754  24789999876665553


Q ss_pred             c-----CC-CChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          245 L-----HP-DGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       245 ~-----~~-~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .     .. +....+..-+-++.+.++|. ++++.
T Consensus        76 ~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~E  109 (331)
T 3ubt_Y           76 EGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAE  109 (331)
T ss_dssp             ETTEECCTTCGGGHHHHHHHHHHHHHCCS-EEEEE
T ss_pred             CCCCccCCCCchhHHHHHHHHHHhccCCe-EEEee
Confidence            2     11 21222333334556667897 44443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.01  E-value=0.0013  Score=61.08  Aligned_cols=60  Identities=15%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~  226 (343)
                      ++..|||||.|.|.++..|++. ...+|+++|+++..+...++.. .  .++++++.+|+.++.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPYDWS  118 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTTCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCccchh
Confidence            3589999999999999999986 3358999999999999999876 2  258999999997754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.78  E-value=0.0056  Score=56.24  Aligned_cols=74  Identities=11%  Similarity=0.032  Sum_probs=59.0

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCC--CcE-EEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGF--SDL-TGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD  236 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~--~~v-~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~  236 (343)
                      ...+++|+.||.|.++..+.+.|+  ..+ .++|+++.+++..+.|+.     .. ++++|+.+...    ...+|+++.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-----~~-~~~~DI~~~~~~~i~~~~~Dil~g   82 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-----EE-VQVKNLDSISIKQIESLNCNTWFM   82 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-----CC-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-----CC-cccCChhhcCHHHhccCCCCEEEe
Confidence            456999999999999999999885  456 799999999999998873     22 56788888753    236899998


Q ss_pred             Ccccccc
Q 019324          237 KGTLDAI  243 (343)
Q Consensus       237 ~~~l~~i  243 (343)
                      ......+
T Consensus        83 gpPCQ~f   89 (327)
T 3qv2_A           83 SPPCQPY   89 (327)
T ss_dssp             CCCCTTC
T ss_pred             cCCccCc
Confidence            8765555

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.68  E-value=0.00034  Score=80.25  Aligned_cols=103  Identities=16%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-----CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-c-cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-----FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-----~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~-~~~~fD~V  234 (343)
                      .+..+|||||.|+|..+..+.+. +     +.+++.+|+|+...+.+++++...   ++.....|..+. . ....||+|
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC-----CCEE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccCCCCceeEE
Confidence            35679999999999765554432 1     237899999998888888776542   333322343332 1 24579999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++..+++..       .+....+.+++++|||||.+++...
T Consensus      1316 ia~~vl~~t-------~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1316 VCNCALATL-------GDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             EEECC---------------------------CCEEEEEEC
T ss_pred             EEccccccc-------ccHHHHHHHHHHhcCCCcEEEEEec
Confidence            999888655       3455678999999999999988653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.47  E-value=0.0072  Score=55.70  Aligned_cols=73  Identities=11%  Similarity=0.126  Sum_probs=58.7

Q ss_pred             CeEEEEccCccHHHHHHHhcCC--CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEECcc
Q 019324          166 WSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKGT  239 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~--~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~~~~  239 (343)
                      .+++|+.||.|.+...+.+.|.  ..|.++|+++.+++..+.|+.     ...++.+|+.+...    ...+|+++....
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP   78 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP   78 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence            4899999999999999988886  468999999999999998863     44567889888753    236999998766


Q ss_pred             cccc
Q 019324          240 LDAI  243 (343)
Q Consensus       240 l~~i  243 (343)
                      ...+
T Consensus        79 CQ~f   82 (333)
T 4h0n_A           79 CQPF   82 (333)
T ss_dssp             CCCS
T ss_pred             Ccch
Confidence            5544

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.07  E-value=0.009  Score=57.75  Aligned_cols=79  Identities=11%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------------
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------------  227 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------------  227 (343)
                      ...+++|+.||.|.++..+.+.|+..|.++|+++.+++.-+.|+...  +...++.+|+.+...                
T Consensus        87 ~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~  164 (482)
T 3me5_A           87 YAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHIR  164 (482)
T ss_dssp             CSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred             ccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhhh
Confidence            35699999999999999999888877999999999999988876321  244567788876531                


Q ss_pred             --CCCccEEEECccccccc
Q 019324          228 --ERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       228 --~~~fD~V~~~~~l~~i~  244 (343)
                        ...+|+++.......+.
T Consensus       165 ~~~~~~Dvl~gGpPCQ~FS  183 (482)
T 3me5_A          165 QHIPEHDVLLAGFPCQPFS  183 (482)
T ss_dssp             HHSCCCSEEEEECCCCCC-
T ss_pred             hcCCCCCEEEecCCCcchh
Confidence              14689999876655553

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.98  E-value=0.016  Score=55.00  Aligned_cols=62  Identities=21%  Similarity=0.193  Sum_probs=49.7

Q ss_pred             cCCCCeEEEEccCccHHHHHHH-hc-C-CCcEEEEeCChHHHHHHHHHHHH---cCC-CceEEEEccCC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELS-KQ-G-FSDLTGVDYSEDAINLAQSLANR---DGF-SCIKFLVDDVL  223 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la-~~-g-~~~v~gvD~s~~~i~~a~~~~~~---~~~-~~i~~~~~D~~  223 (343)
                      +.++..|+|+||+.|..+..++ .. + ..+|+++|.+|...+.++++...   ++. +++.++..-+.
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            4678999999999999999887 43 3 25899999999999999999987   234 57776654443

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.92  E-value=0.02  Score=53.85  Aligned_cols=106  Identities=17%  Similarity=0.128  Sum_probs=65.0

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-c-------cCCC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-------LERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~-------~~~~  230 (343)
                      ...++.+||-+|||. |.++..+++. |+.+|+++|.++..++.+++    .|.   +++...-.+. .       ....
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~~~~~~~g~g  254 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF---ETIDLRNSAPLRDQIDQILGKPE  254 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC---EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---cEEcCCCcchHHHHHHHHhCCCC
Confidence            346789999999976 7888888775 76589999999998888764    343   2332211111 0       1236


Q ss_pred             ccEEEECccccccccCCC--ChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          231 FQLVMDKGTLDAIGLHPD--GPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~--~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +|+|+....-.... +..  ........++.+.++|++||++++..
T Consensus       255 ~Dvvid~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          255 VDCGVDAVGFEAHG-LGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             EEEEEECSCTTCBC-SGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CCEEEECCCCcccc-ccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            99998743221100 000  00000124588899999999998754

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.83  E-value=0.025  Score=52.63  Aligned_cols=95  Identities=19%  Similarity=0.211  Sum_probs=63.9

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------cCCCcc
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQ  232 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------~~~~fD  232 (343)
                      ...++.+||-+|||. |.++..+++. |+..|+++|.++..++.+++.    |.+  .++..+-.+..      ..+.+|
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~~~~gg~D  260 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--HVINSKTQDPVAAIKEITDGGVN  260 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC--EEecCCccCHHHHHHHhcCCCCc
Confidence            346789999999986 7777788775 765799999999988888753    322  12221111110      123699


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +|+.....             ...++.+.++|+++|++++..
T Consensus       261 ~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          261 FALESTGS-------------PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             EEEECSCC-------------HHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEECCCC-------------HHHHHHHHHHHhcCCEEEEeC
Confidence            99864321             124588899999999998854

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.82  E-value=0.019  Score=52.88  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=63.8

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECc
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      +..++.+||-+|+|. |.++..+++. |+ +|+++|.++.-.+.+++    .|.+.+  + .|...  ....+|+|+...
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~v--~-~~~~~--~~~~~D~vid~~  242 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVKHF--Y-TDPKQ--CKEELDFIISTI  242 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCSEE--E-SSGGG--CCSCEEEEEECC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCCee--c-CCHHH--HhcCCCEEEECC
Confidence            346789999999875 6777777775 76 89999999998888765    343222  2 33222  233799998743


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .-.             ..++.+.++|+|+|++++...
T Consensus       243 g~~-------------~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          243 PTH-------------YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             CSC-------------CCHHHHHTTEEEEEEEEECCC
T ss_pred             CcH-------------HHHHHHHHHHhcCCEEEEECC
Confidence            221             123788899999999998643

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.52  E-value=0.08  Score=48.64  Aligned_cols=103  Identities=16%  Similarity=0.214  Sum_probs=75.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC---------------------CCceEEEEc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG---------------------FSCIKFLVD  220 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~---------------------~~~i~~~~~  220 (343)
                      .+...|+.+|||.......|... +...++-+|+ |..++.-++.+...+                     .++..++.+
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            35679999999999999998875 2226777777 777777777665541                     147899999


Q ss_pred             cCCCCc----------cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          221 DVLDTK----------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       221 D~~~~~----------~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      |+.+..          ......++++-+++.++.     +.....+++.+.+.. |+|.+++
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~-----~~~~~~ll~~ia~~~-~~~~~v~  230 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMH-----NNESQLLINTIMSKF-SHGLWIS  230 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-----HHHHHHHHHHHHHHC-SSEEEEE
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC-----HHHHHHHHHHHHhhC-CCcEEEE
Confidence            998742          124578889989998883     466677888888877 6777654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.51  E-value=0.044  Score=50.69  Aligned_cols=98  Identities=16%  Similarity=0.151  Sum_probs=65.0

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-----cCCC----CccCC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-----DVLD----TKLER  229 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-----D~~~----~~~~~  229 (343)
                      ...++.+||-+|+|. |.++..+++. |+..|+++|.++.-.+.+++. ..   .-+.+...     |+.+    .....
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~---~~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP---EVVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT---TCEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch---hcccccccccchHHHHHHHHHHhCCC
Confidence            346788999999865 6777777776 765699999999999999875 21   12222211     1111    00134


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+|+|+....-.             ..+..+.++|++||++++...
T Consensus       252 g~Dvvid~~g~~-------------~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          252 EPAVALECTGVE-------------SSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CCSEEEECSCCH-------------HHHHHHHHHSCTTCEEEECCC
T ss_pred             CCCEEEECCCCh-------------HHHHHHHHHhcCCCEEEEEcc
Confidence            799999743211             245788899999999998643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.49  E-value=0.025  Score=52.15  Aligned_cols=95  Identities=17%  Similarity=0.158  Sum_probs=63.4

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-------ccCCCc
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLERQF  231 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-------~~~~~f  231 (343)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.++..++.+++.    |..  .++..+-.+.       .....+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~v~~~t~g~g~  236 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT--DIINYKNGDIVEQILKATDGKGV  236 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC--EEECGGGSCHHHHHHHHTTTCCE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc--eEEcCCCcCHHHHHHHHcCCCCC
Confidence            346789999999875 6777777776 665899999999988888763    322  1221111111       012369


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+|+....-.             ..++.+.++|+|||++++..
T Consensus       237 D~v~d~~g~~-------------~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          237 DKVVIAGGDV-------------HTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEECSSCT-------------THHHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCCCh-------------HHHHHHHHHHhcCCEEEEec
Confidence            9999743211             23478889999999998754

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.40  E-value=0.059  Score=50.51  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-Cc-------cCCC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK-------LERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-~~-------~~~~  230 (343)
                      +..++.+||-+|||. |.++..+++. |+..|+++|.++..++.+++    .|.   +.+...-.+ +.       ....
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---EIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC---cEEccCCcchHHHHHHHHhCCCC
Confidence            346789999999865 7778888775 76579999999998888865    343   222211111 00       1236


Q ss_pred             ccEEEECccccccc-----cCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          231 FQLVMDKGTLDAIG-----LHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       231 fD~V~~~~~l~~i~-----~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +|+|+....-....     .|...   ....++.+.++|++||++++..
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEA---PATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBC---TTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCEEEECCCCcccccccccccccc---hHHHHHHHHHHHhcCCEEEEec
Confidence            99999753321100     00000   1124578899999999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.37  E-value=0.025  Score=51.27  Aligned_cols=88  Identities=16%  Similarity=0.231  Sum_probs=58.9

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      ..++.+||-+|+| .|.++..+++. |+ +|++++ ++.-.+.+++.    |.   .....|...  ....+|+|+....
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga---~~v~~d~~~--v~~g~Dvv~d~~g  208 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GV---RHLYREPSQ--VTQKYFAIFDAVN  208 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TE---EEEESSGGG--CCSCEEEEECC--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CC---CEEEcCHHH--hCCCccEEEECCC
Confidence            3678999999996 46777777776 77 899999 98888888763    32   222224211  2567999986321


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      -.              .+....++|+++|++++..
T Consensus       209 ~~--------------~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          209 SQ--------------NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             -------------------TTGGGEEEEEEEEEEC
T ss_pred             ch--------------hHHHHHHHhcCCCEEEEEe
Confidence            11              1256789999999998874

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.32  E-value=0.012  Score=54.02  Aligned_cols=48  Identities=8%  Similarity=-0.044  Sum_probs=43.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~  211 (343)
                      .++..|||..||+|..+....+.|. +.+|+|+++..++.+++++...+
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcc
Confidence            6789999999999999999999875 89999999999999999886554

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.22  E-value=0.29  Score=42.73  Aligned_cols=111  Identities=13%  Similarity=0.032  Sum_probs=73.6

Q ss_pred             CCCCeEEEEccC--cc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG--~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      ..++++|-.|++  .|   .++..|++.|+ +|+.++.++...+.+.+.....+..++.++.+|+.+...          
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            346789999976  33   35677778887 899999988777776666655553478999999998641          


Q ss_pred             -CCCccEEEECcccccc-----ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 -ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                       -+..|+++.+..+...     .+........           ..+++.+...++++|.+++.+
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence             1478999987654320     0011112222           235567778888888888754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.20  E-value=0.061  Score=50.00  Aligned_cols=94  Identities=19%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----------c
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L  227 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----------~  227 (343)
                      ...++.+||-+|+|. |.++..+++. |+..|+++|.++...+.+++.    |.+.  .+  |..+..           .
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~--vi--~~~~~~~~~~i~~~~~~~  250 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GATA--TV--DPSAGDVVEAIAGPVGLV  250 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCSE--EE--CTTSSCHHHHHHSTTSSS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCCE--EE--CCCCcCHHHHHHhhhhcc
Confidence            346789999999865 6777777775 766899999999988888763    3321  11  211110           1


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+.+|+|+.....             ...++.+.++|++||++++...
T Consensus       251 ~gg~Dvvid~~G~-------------~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          251 PGGVDVVIECAGV-------------AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TTCEEEEEECSCC-------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCCC-------------HHHHHHHHHHhccCCEEEEEec
Confidence            2479999974221             1245888999999999988643

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.20  E-value=0.1  Score=46.03  Aligned_cols=103  Identities=12%  Similarity=0.140  Sum_probs=68.6

Q ss_pred             CCeEEEEccCccHHHHHHHhc-------C-CCcEEEEe-----CChH----------------------HHHHH---HHH
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ-------G-FSDLTGVD-----YSED----------------------AINLA---QSL  206 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-------g-~~~v~gvD-----~s~~----------------------~i~~a---~~~  206 (343)
                      +..|+|+||-.|..+..++..       + ..+|+++|     ..+.                      .++..   .++
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            569999999999887776542       2 24899999     3211                      11111   112


Q ss_pred             HHHcCC--CceEEEEccCCCCc-------cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          207 ANRDGF--SCIKFLVDDVLDTK-------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       207 ~~~~~~--~~i~~~~~D~~~~~-------~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ....+.  ++++++.+++.+.-       ...++|+|+..+-.         ......+++.+...|+|||++++...+
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~---------Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL---------YEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC---------HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc---------cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            223343  58999999987642       13468988875421         234456789999999999999997764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.18  E-value=0.05  Score=50.26  Aligned_cols=96  Identities=18%  Similarity=0.159  Sum_probs=63.4

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc---CCCC----c--cCC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD---VLDT----K--LER  229 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D---~~~~----~--~~~  229 (343)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.++.-++.+++    .|.+  .++..+   -.+.    .  ...
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD--LVLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS--EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC--EEEcCcccccchHHHHHHHHhCC
Confidence            346789999999875 7777777775 66589999999988888764    3432  122211   0000    0  024


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+|+|+.....          .   ..+....++|+|||++++...
T Consensus       242 g~D~vid~~g~----------~---~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          242 KPEVTIECTGA----------E---ASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CCSEEEECSCC----------H---HHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCEEEECCCC----------h---HHHHHHHHHhcCCCEEEEEec
Confidence            69999874321          1   234788899999999988543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=95.17  E-value=0.29  Score=44.40  Aligned_cols=107  Identities=9%  Similarity=0.054  Sum_probs=79.9

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC---CceEEEEccCCCCcc----------CCCc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKL----------ERQF  231 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~---~~i~~~~~D~~~~~~----------~~~f  231 (343)
                      ...|++||||-=.....+.......++-+| .|..++..++.+...+.   .+..++.+|+.+ ..          ....
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P  180 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR  180 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred             CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence            357999999988777666532123799999 49999998888875432   468899999987 31          1245


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      -++++-+++.++.     +.....+++.+...+.||+.+++...+..
T Consensus       181 t~~i~Egvl~Yl~-----~~~~~~ll~~l~~~~~~gs~l~~d~~~~~  222 (310)
T 2uyo_A          181 TAWLAEGLLMYLP-----ATAQDGLFTEIGGLSAVGSRIAVETSPLH  222 (310)
T ss_dssp             EEEEECSCGGGSC-----HHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             EEEEEechHhhCC-----HHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence            5778888888873     35667888999999999999999876654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.03  E-value=0.018  Score=52.73  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=41.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCCh---HHHHHHHHHHHHcC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE---DAINLAQSLANRDG  211 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~---~~i~~a~~~~~~~~  211 (343)
                      .++..|||..||+|..+....+.|. +.+|+|+++   ..++.+++++...+
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            6789999999999999999998875 899999999   99999999876543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.03  E-value=0.039  Score=46.23  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCCC
Q 019324          163 LSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQ  230 (343)
Q Consensus       163 ~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~~  230 (343)
                      .++.+||..|+  |.|.....++.. |+ +|+++|.++...+.+++    .+.. . .  .|..+..         ....
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~-~-~--~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE-Y-V--GDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS-E-E--EETTCSTHHHHHHHHTTTCC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC-E-E--eeCCcHHHHHHHHHHhCCCC
Confidence            56889999995  456665555554 76 89999999887776653    2332 1 1  2333221         1236


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +|+++.+..-              ..++.+.++|+|||++++...
T Consensus       108 ~D~vi~~~g~--------------~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          108 VDVVLNSLAG--------------EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             EEEEEECCCT--------------HHHHHHHHTEEEEEEEEECSC
T ss_pred             CeEEEECCch--------------HHHHHHHHHhccCCEEEEEcC
Confidence            8999875321              235788899999999988543

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=94.86  E-value=0.067  Score=54.94  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=38.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC------CCcEEEEeCChHHHHHHHHHH
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG------FSDLTGVDYSEDAINLAQSLA  207 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g------~~~v~gvD~s~~~i~~a~~~~  207 (343)
                      .+..+|||+.||.|.++.-+.+.|      +.-+.++|+++.|++.-+.|+
T Consensus       210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            445799999999999998887765      456899999999999998885

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.81  E-value=0.093  Score=48.55  Aligned_cols=94  Identities=19%  Similarity=0.160  Sum_probs=62.6

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCCc
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQF  231 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~f  231 (343)
                      ...++.+||-+|+|. |.++..+++. |+ +|+++|.++.-++.+++.    |..  .++..+-.+..       ....+
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GAD--HGINRLEEDWVERVYALTGDRGA  258 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CCC--EEEcCCcccHHHHHHHHhCCCCc
Confidence            346789999999875 6677777765 76 899999999988887653    332  12221111110       12379


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |+|+....-.              .+..+.++|+|+|++++...
T Consensus       259 D~vid~~g~~--------------~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          259 DHILEIAGGA--------------GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             EEEEEETTSS--------------CHHHHHHHEEEEEEEEEECC
T ss_pred             eEEEECCChH--------------HHHHHHHHhhcCCEEEEEec
Confidence            9998743211              24778889999999998643

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.77  E-value=0.48  Score=41.75  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=73.4

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC------------hHHHHHHHHHHHHcCCCceEEEEccCCCCcc
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s------------~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~  227 (343)
                      ..+++||-.|++.|   .++..|++.|+ +|+.+|.+            ...++.+.......+ .++.++.+|+.+...
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccCCCHHH
Confidence            45778999998766   35666777787 89999987            666666666665555 479999999988631


Q ss_pred             -----------CCCccEEEECccccccccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 -----------ERQFQLVMDKGTLDAIGLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 -----------~~~fD~V~~~~~l~~i~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                                 -+..|+++.+..+...... ......           ..+++.+...|+.+|.++..+
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAH-LPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTT-CCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCc-CCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence                       1478999988654332211 111221           244566777888888887754

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.75  E-value=0.12  Score=48.34  Aligned_cols=76  Identities=14%  Similarity=0.226  Sum_probs=51.5

Q ss_pred             CCeEEEEccCccHHHHHHHhc--------CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEE
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  236 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~--------g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~  236 (343)
                      +..|+|+|.|.|.++..+++.        ...+++.||+|+...+.-++++...+  ++.+. .++.+.+  ...-+|++
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~--~v~W~-~~l~~lp--~~~~~viA  155 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIR--NIHWH-DSFEDVP--EGPAVILA  155 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCS--SEEEE-SSGGGSC--CSSEEEEE
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCC--CeEEe-CChhhcC--CCCeEEEe
Confidence            457999999999998777642        11279999999998886666554332  45554 2233322  22558888


Q ss_pred             Ccccccccc
Q 019324          237 KGTLDAIGL  245 (343)
Q Consensus       237 ~~~l~~i~~  245 (343)
                      |.++|++.+
T Consensus       156 NE~fDAlPv  164 (387)
T 1zkd_A          156 NEYFDVLPI  164 (387)
T ss_dssp             ESSGGGSCC
T ss_pred             ccccccCce
Confidence            888888854

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.50  E-value=0.18  Score=46.32  Aligned_cols=94  Identities=20%  Similarity=0.199  Sum_probs=61.8

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc-CCCCc------c----
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLDTK------L----  227 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D-~~~~~------~----  227 (343)
                      +..++.+||-+|+|. |.++..+++. |+ +|+++|.++..++.+++    .|.+  .++..+ -.+..      .    
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~--~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD--VTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS--EEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC--EEEcCcccccHHHHHHHHhcccc
Confidence            346789999999874 6677777765 76 59999999998888764    3432  122111 01110      0    


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ...+|+|+......             ..++...++|+++|++++..
T Consensus       238 g~g~D~vid~~g~~-------------~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          238 GDLPNVTIDCSGNE-------------KCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSCCSEEEECSCCH-------------HHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCCCH-------------HHHHHHHHHHhcCCEEEEEe
Confidence            24699998743211             23478889999999998854

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.44  E-value=0.075  Score=48.61  Aligned_cols=92  Identities=18%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCCcc
Q 019324          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ  232 (343)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~fD  232 (343)
                      ..++.+||-+|+|. |.++..+++. |+ +|+++|.++..++.+++    .|.+.  ++  |..+...       .+.+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~--~i--~~~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAEV--AV--NARDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCSE--EE--ETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCCE--EE--eCCCcCHHHHHHHhCCCCC
Confidence            36788999999975 8888888876 76 89999999998888765    34321  12  2222111       13688


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +|+....-             ...++.+.++|+++|++++...
T Consensus       235 ~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          235 GVLVTAVS-------------PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             EEEESSCC-------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEEEeCCC-------------HHHHHHHHHHhccCCEEEEeCC
Confidence            88864321             1245888999999999988643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.26  E-value=0.099  Score=47.60  Aligned_cols=91  Identities=15%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             ccCCCCeEEEEcc--CccHHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-Cc--------cC
Q 019324          161 KYLSSWSVLDIGT--GNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK--------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGc--G~G~~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-~~--------~~  228 (343)
                      ...++.+||-.||  |.|..+..++. .|+ +|+++|.++..++.+++    .+. ..   ..|..+ ..        ..
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~-~~---~~d~~~~~~~~~~~~~~~~  212 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGF-DA---AFNYKTVNSLEEALKKASP  212 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC-SE---EEETTSCSCHHHHHHHHCT
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCC-cE---EEecCCHHHHHHHHHHHhC
Confidence            3467889999998  56666666655 476 89999999988877743    232 11   124333 11        12


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +.+|+++.+..-              ..+..+.++|++||++++..
T Consensus       213 ~~~d~vi~~~g~--------------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          213 DGYDCYFDNVGG--------------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             TCEEEEEESSCH--------------HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCeEEEECCCh--------------HHHHHHHHHHhcCCEEEEEe
Confidence            468999875431              13578889999999998754

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.23  E-value=0.049  Score=50.02  Aligned_cols=95  Identities=17%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCCc
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQF  231 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~f  231 (343)
                      ...++.+||-+|+|. |.++..+++. |..+|+++|.++.-++.+++    .|.+.  ++..+- +..       ....+
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~--~i~~~~-~~~~~v~~~t~g~g~  240 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA--AVKSGA-GAADAIRELTGGQGA  240 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE--EEECST-THHHHHHHHHGGGCE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE--EEcCCC-cHHHHHHHHhCCCCC
Confidence            347789999999875 7777777775 45599999999998888875    34322  221111 110       12379


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |+|+....-.             ..++.+.++|+++|++++...
T Consensus       241 d~v~d~~G~~-------------~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          241 TAVFDFVGAQ-------------STIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             EEEEESSCCH-------------HHHHHHHHHEEEEEEEEECSC
T ss_pred             eEEEECCCCH-------------HHHHHHHHHHhcCCEEEEECC
Confidence            9998743211             245888999999999988643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.17  E-value=0.39  Score=44.74  Aligned_cols=111  Identities=14%  Similarity=0.068  Sum_probs=76.6

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc--eEEEEccCCCCccCCCccEEEECcccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~--i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+.+||.++.+-|.++..++..   .++.+.-|-.+-..++.|+..++++.  +++...  .+ .+...||+|+..-   
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~-~~~~~~~~v~~~l---  108 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYPQQPGVVLIKV---  108 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS-CCCSSCSEEEEEC---
T ss_pred             CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc-ccccCCCEEEEEc---
Confidence            3468999999999999998765   34555447777778888999988853  555432  22 2456799988631   


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHHh
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVSN  288 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~~  288 (343)
                           |.........|..+...|+||+.+++..-+.. .....+.+..
T Consensus       109 -----pk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~  151 (375)
T 4dcm_A          109 -----PKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEK  151 (375)
T ss_dssp             -----CSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHh
Confidence                 23335667788999999999999988665442 2444444443

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.02  E-value=0.077  Score=48.58  Aligned_cols=92  Identities=16%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             ccCCCCeEEEEccC--ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cC
Q 019324          161 KYLSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGcG--~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~  228 (343)
                      ...++.+||-+|||  .|..+..+++. |+ +|+++|.++..++.+++.    |..  ..+  |..+..         ..
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~--~~~--~~~~~~~~~~~~~~~~~  211 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA--YVI--DTSTAPLYETVMELTNG  211 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHTTT
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc--EEE--eCCcccHHHHHHHHhCC
Confidence            33678999999987  56777777765 76 899999999988888763    322  122  222211         12


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..+|+|+....-..              +....++|+++|++++...
T Consensus       212 ~g~Dvvid~~g~~~--------------~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          212 IGADAAIDSIGGPD--------------GNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             SCEEEEEESSCHHH--------------HHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEECCCChh--------------HHHHHHHhcCCCEEEEEee
Confidence            47999987533211              1344589999999988643

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.95  E-value=0.24  Score=45.83  Aligned_cols=94  Identities=17%  Similarity=0.164  Sum_probs=62.7

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----Cc------cC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----TK------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~----~~------~~  228 (343)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.++..++.+++    .|...  ++  |..+    ..      ..
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi--~~~~~~~~~~~~~~~~~~  260 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGATD--FV--NPNDHSEPISQVLSKMTN  260 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCCE--EE--CGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCce--EE--eccccchhHHHHHHHHhC
Confidence            346788999999864 6677777765 66579999999998888864    34321  11  2221    10      02


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~  275 (343)
                      +.+|+|+.....             ...++.+.++|+++ |++++...
T Consensus       261 ~g~D~vid~~g~-------------~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          261 GGVDFSLECVGN-------------VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             SCBSEEEECSCC-------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCCCEEEECCCC-------------HHHHHHHHHHhhcCCcEEEEEcC
Confidence            479999874321             12357889999999 99988543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.88  E-value=0.18  Score=46.76  Aligned_cols=93  Identities=19%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----Cc------cC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----TK------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~----~~------~~  228 (343)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.++..++.+++    .|.+.  ++  |..+    ..      ..
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi--~~~~~~~~~~~~i~~~t~  259 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATE--CL--NPKDYDKPIYEVICEKTN  259 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSE--EE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcE--EE--ecccccchHHHHHHHHhC
Confidence            346789999999864 6677777765 76579999999998888764    34321  12  2211    10      12


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEe
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS  274 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~  274 (343)
                      +.+|+|+....-             ...++.+.++|+++ |++++..
T Consensus       260 gg~Dvvid~~g~-------------~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          260 GGVDYAVECAGR-------------IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             SCBSEEEECSCC-------------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CCCCEEEECCCC-------------HHHHHHHHHHHhcCCCEEEEEc
Confidence            479999974221             12357889999999 9998754

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=93.86  E-value=0.24  Score=51.99  Aligned_cols=77  Identities=13%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC------------C----
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD------------T----  225 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~------------~----  225 (343)
                      ....+++|+.||.|.++..+.+.|+ .-+.++|+++.+++..+.|.     ++..++..|+.+            .    
T Consensus       538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~~  612 (1002)
T 3swr_A          538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQR  612 (1002)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred             CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhhh
Confidence            3456899999999999999988887 56889999999999888875     345566666422            1    


Q ss_pred             -ccCCCccEEEECccccccc
Q 019324          226 -KLERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       226 -~~~~~fD~V~~~~~l~~i~  244 (343)
                       +..+.+|+|+.......+.
T Consensus       613 lp~~~~vDll~GGpPCQ~FS  632 (1002)
T 3swr_A          613 LPQKGDVEMLCGGPPCQGFS  632 (1002)
T ss_dssp             CCCTTTCSEEEECCCCTTCC
T ss_pred             cccCCCeeEEEEcCCCcchh
Confidence             1235789999877665553

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.86  E-value=0.11  Score=48.24  Aligned_cols=94  Identities=21%  Similarity=0.233  Sum_probs=63.6

Q ss_pred             ccCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCC--CCc--------cC
Q 019324          161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL--DTK--------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~--~~~--------~~  228 (343)
                      ...++.+||-+|+| .|.++..+++. |+.+|+++|.++.-++.+++    .|.+.  ++  |..  ...        ..
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi--~~~~~~~~~~~~i~~~~~  261 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVNE--FV--NPKDHDKPIQEVIVDLTD  261 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCCE--EE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCcE--EE--ccccCchhHHHHHHHhcC
Confidence            34678999999996 36777777776 77689999999998888764    34321  12  221  110        13


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~  275 (343)
                      +.+|+|+....-             ...++.+.++|++| |++++...
T Consensus       262 gg~D~vid~~g~-------------~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          262 GGVDYSFECIGN-------------VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             SCBSEEEECSCC-------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCCCEEEECCCC-------------HHHHHHHHHHhhccCCEEEEEcc
Confidence            479999974321             12458889999997 99988643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.75  E-value=0.04  Score=51.26  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=61.8

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc---c-CCCCccCCCccEE
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---D-VLDTKLERQFQLV  234 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~---D-~~~~~~~~~fD~V  234 (343)
                      +..++.+||-+|+|. |.++..+++. |+ +|+++|.++..++.+++    .|...  ++..   | +..  ..+.+|+|
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~--~~~g~Dvv  261 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGADE--VVNSRNADEMAA--HLKSFDFI  261 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCSE--EEETTCHHHHHT--TTTCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCcE--EeccccHHHHHH--hhcCCCEE
Confidence            346789999999974 6777777765 66 69999999998888875    23221  1211   1 111  12579999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +....-..             .++.+.++|+++|++++...
T Consensus       262 id~~g~~~-------------~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          262 LNTVAAPH-------------NLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EECCSSCC-------------CHHHHHTTEEEEEEEEECCC
T ss_pred             EECCCCHH-------------HHHHHHHHhccCCEEEEecc
Confidence            87432211             23678899999999887543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.69  E-value=0.27  Score=45.42  Aligned_cols=93  Identities=19%  Similarity=0.226  Sum_probs=62.4

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----Cc------cC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----TK------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~----~~------~~  228 (343)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.++..++.+++.    |...  ++  |..+    ..      ..
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~~--vi--~~~~~~~~~~~~v~~~~~  258 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GATE--CI--NPQDFSKPIQEVLIEMTD  258 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCSE--EE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCce--Ee--ccccccccHHHHHHHHhC
Confidence            346788999999864 6667777765 765799999999988888753    3321  12  2221    10      12


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEe
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS  274 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~  274 (343)
                      +.+|+|+....-             ...++.+.++|+++ |++++..
T Consensus       259 ~g~D~vid~~g~-------------~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          259 GGVDYSFECIGN-------------VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             SCBSEEEECSCC-------------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCCCEEEECCCc-------------HHHHHHHHHhhccCCcEEEEEe
Confidence            479999874321             12357889999999 9998854

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.68  E-value=1.1  Score=39.83  Aligned_cols=109  Identities=16%  Similarity=0.099  Sum_probs=71.0

Q ss_pred             CCCCeEEEEccCcc-----HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNG-----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G-----~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      ..++++|-.|++.|     .++..|++.|+ +|+.++.++...+.+++.....+  ++.++.+|+.+...          
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHH
Confidence            45789999997633     35667777887 79999999776666665554443  68899999988631          


Q ss_pred             -CCCccEEEECcccccc-----ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 -ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                       -+..|+++.+..+...     .+........           ..+++.+...++.+|.++..+
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence             2478999987654320     0011111221           234566777778888888754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.66  E-value=0.078  Score=49.00  Aligned_cols=94  Identities=21%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCC-CC--ccCCCccEEE
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL-DT--KLERQFQLVM  235 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~-~~--~~~~~fD~V~  235 (343)
                      +..++.+||-+|+|. |.++..+++. |+ +|+++|.++..++.+++.    |...  ++..+-. +.  ...+.+|+|+
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--v~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GADH--YIATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCSE--EEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc----CCCE--EEcCcCchHHHHHhhcCCCEEE
Confidence            346789999999853 6667777765 76 799999999888888752    3221  2211111 11  0124799998


Q ss_pred             ECccc--cccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          236 DKGTL--DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       236 ~~~~l--~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ....-  ..             .++.+.++|++||++++..
T Consensus       249 d~~g~~~~~-------------~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          249 VCASSLTDI-------------DFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             ECCSCSTTC-------------CTTTGGGGEEEEEEEEECC
T ss_pred             ECCCCCcHH-------------HHHHHHHHhcCCCEEEEec
Confidence            75332  11             1266788999999988753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.65  E-value=0.38  Score=37.77  Aligned_cols=95  Identities=9%  Similarity=0.078  Sum_probs=59.8

Q ss_pred             CCeEEEEccCc-cH-HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEEC
Q 019324          165 SWSVLDIGTGN-GL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  237 (343)
Q Consensus       165 ~~~VLDiGcG~-G~-~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~  237 (343)
                      ..+|+=+|||. |. ++..|.+.|. .|+++|.++..++.+++       ..+.++.+|..+...     -..+|+|+..
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~-------~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE-------RGVRAVLGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH-------TTCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH-------cCCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence            45899999964 32 3334445576 89999999998887765       256789999877531     2468888863


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      -.-         .... ..+-...+.+.|+..++....+.
T Consensus        79 ~~~---------~~~n-~~~~~~a~~~~~~~~iiar~~~~  108 (140)
T 3fwz_A           79 IPN---------GYEA-GEIVASARAKNPDIEIIARAHYD  108 (140)
T ss_dssp             CSC---------HHHH-HHHHHHHHHHCSSSEEEEEESSH
T ss_pred             CCC---------hHHH-HHHHHHHHHHCCCCeEEEEECCH
Confidence            211         1111 22234556677888766654433

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.60  E-value=0.64  Score=41.24  Aligned_cols=77  Identities=13%  Similarity=0.113  Sum_probs=56.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-cc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~~-----------  227 (343)
                      ..+++||-.|++.|   .++..|+++|+ +|+.++.++...+.+.+.+...+..++.++.+|+.+. ..           
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            34678888887766   34566667787 8999999998877777666555445799999999986 21           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        89 ~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 FGKLDILVNNAGV  101 (311)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            1479999988754

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.59  E-value=0.17  Score=46.58  Aligned_cols=87  Identities=18%  Similarity=0.291  Sum_probs=57.8

Q ss_pred             CeEEEEccC-ccHHH-HHHH-hc-CCCcEEEEeCChH---HHHHHHHHHHHcCCCceEEEEccCCCCcc------CCCcc
Q 019324          166 WSVLDIGTG-NGLLL-QELS-KQ-GFSDLTGVDYSED---AINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQ  232 (343)
Q Consensus       166 ~~VLDiGcG-~G~~~-~~la-~~-g~~~v~gvD~s~~---~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------~~~fD  232 (343)
                      .+||-+|+| .|.++ ..++ +. |+.+|+++|.++.   -.+.+++    .|.   +..  |..+...      .+.+|
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa---~~v--~~~~~~~~~i~~~~gg~D  244 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA---TYV--DSRQTPVEDVPDVYEQMD  244 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC---EEE--ETTTSCGGGHHHHSCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC---ccc--CCCccCHHHHHHhCCCCC
Confidence            899999985 36677 7777 65 7644999999987   7777764    332   222  3322111      13689


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +|+....-          .   ..++.+.++|+++|++++..
T Consensus       245 vvid~~g~----------~---~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          245 FIYEATGF----------P---KHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             EEEECSCC----------H---HHHHHHHHHEEEEEEEEECC
T ss_pred             EEEECCCC----------h---HHHHHHHHHHhcCCEEEEEe
Confidence            98864221          1   23578889999999998854

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.58  E-value=0.18  Score=45.82  Aligned_cols=91  Identities=25%  Similarity=0.244  Sum_probs=61.9

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCC
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  229 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~  229 (343)
                      ..++.+||-.|+  |.|..+..+++. |+ +|++++.++.-++.+++.    |..  ..+  |..+..         ...
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~--~~~--~~~~~~~~~~~~~~~~~~  208 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GAW--ETI--DYSHEDVAKRVLELTDGK  208 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC--EEE--eCCCccHHHHHHHHhCCC
Confidence            367889999983  567777777765 76 899999999988888753    321  122  222211         124


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+|+|+....-.              .+..+.++|+++|++++...
T Consensus       209 g~Dvvid~~g~~--------------~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          209 KCPVVYDGVGQD--------------TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             CEEEEEESSCGG--------------GHHHHHTTEEEEEEEEECCC
T ss_pred             CceEEEECCChH--------------HHHHHHHHhcCCCEEEEEec
Confidence            799999754322              24788899999999998643

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.57  E-value=0.11  Score=47.59  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=61.5

Q ss_pred             ccCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-cc--------C
Q 019324          161 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KL--------E  228 (343)
Q Consensus       161 ~~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-~~--------~  228 (343)
                      ...++.+||-.||  |.|..+..++.. |+ +|++++.++..++.+++.   .|.. . .+  |..+. ..        .
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g~~-~-~~--d~~~~~~~~~~~~~~~~  223 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FGFD-D-AF--NYKEESDLTAALKRCFP  223 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SCCS-E-EE--ETTSCSCSHHHHHHHCT
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCc-e-EE--ecCCHHHHHHHHHHHhC
Confidence            3467889999997  567777776664 76 899999999888777632   2332 1 11  33221 11        2


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +.+|+|+.+..-              ..++...++|++||++++..
T Consensus       224 ~~~d~vi~~~g~--------------~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          224 NGIDIYFENVGG--------------KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             TCEEEEEESSCH--------------HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCcEEEECCCH--------------HHHHHHHHHHhcCCEEEEEc
Confidence            468999875321              24588899999999998753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.57  E-value=0.11  Score=47.35  Aligned_cols=92  Identities=14%  Similarity=0.173  Sum_probs=61.9

Q ss_pred             ccCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cCC
Q 019324          161 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LER  229 (343)
Q Consensus       161 ~~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~~  229 (343)
                      ...++.+||-.||  |.|..+..+++. |+ +|++++.++..++.+.+.   .|..  ..+  |..+..        ..+
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~---~g~~--~~~--~~~~~~~~~~~~~~~~~  217 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEE---LGFD--GAI--DYKNEDLAAGLKRECPK  217 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---TCCS--EEE--ETTTSCHHHHHHHHCTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCC--EEE--ECCCHHHHHHHHHhcCC
Confidence            3467899999998  567777777665 76 899999999888777332   2321  111  222211        134


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+|+|+.+..-              ..+..+.++|+++|++++..
T Consensus       218 ~~d~vi~~~g~--------------~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          218 GIDVFFDNVGG--------------EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             CEEEEEESSCH--------------HHHHHHHTTEEEEEEEEECC
T ss_pred             CceEEEECCCc--------------chHHHHHHHHhhCCEEEEEe
Confidence            69999874321              24588899999999998853

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.49  E-value=0.47  Score=42.45  Aligned_cols=76  Identities=17%  Similarity=0.162  Sum_probs=58.8

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..+++||-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           -
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG-FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            45678999998876   35666777787 89999999998888877776665 379999999988631           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            478999988654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.46  E-value=0.3  Score=45.79  Aligned_cols=98  Identities=19%  Similarity=0.157  Sum_probs=60.0

Q ss_pred             cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCCC
Q 019324          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQ  230 (343)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~~  230 (343)
                      ..++.+||-+|+|. |.++..+++. |+.+|+++|.++.-++.+++.    |..  .++  |..+..         ....
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi--~~~~~~~~~~i~~~t~g~g  282 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD--HVI--DPTKENFVEAVLDYTNGLG  282 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS--EEE--CTTTSCHHHHHHHHTTTCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC--EEE--cCCCCCHHHHHHHHhCCCC
Confidence            46788999999864 5667777765 766899999999998888753    322  112  222111         1236


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +|+|+....-..        .....+++.+.+.++++|++++...
T Consensus       283 ~D~vid~~g~~~--------~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          283 AKLFLEATGVPQ--------LVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CSEEEECSSCHH--------HHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCEEEECCCCcH--------HHHHHHHHHHHhccCCCcEEEEeCC
Confidence            999997432110        0111222333355599999998643

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.38  E-value=0.31  Score=45.06  Aligned_cols=93  Identities=18%  Similarity=0.178  Sum_probs=62.0

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----Cc------cC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----TK------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~----~~------~~  228 (343)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.++..++.+++    .|...  ++  |..+    ..      ..
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi--~~~~~~~~~~~~~~~~~~  259 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGATE--CV--NPQDYKKPIQEVLTEMSN  259 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSE--EE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCce--Ee--cccccchhHHHHHHHHhC
Confidence            346788999999864 6677777765 66579999999998888764    34321  12  2221    10      12


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEe
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS  274 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~  274 (343)
                      +.+|+|+....-             ...+..+.++|+++ |++++..
T Consensus       260 ~g~D~vid~~g~-------------~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          260 GGVDFSFEVIGR-------------LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             SCBSEEEECSCC-------------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             CCCcEEEECCCC-------------HHHHHHHHHHhhcCCcEEEEec
Confidence            479999874321             12357888999999 9998754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.37  E-value=0.31  Score=45.09  Aligned_cols=94  Identities=16%  Similarity=0.138  Sum_probs=62.5

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC----Cc------cC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----TK------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~----~~------~~  228 (343)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.++..++.+++    .|...  ++  |..+    ..      ..
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi--~~~~~~~~~~~~v~~~~~  263 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATD--CL--NPRELDKPVQDVITELTA  263 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSE--EE--CGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCcE--EE--ccccccchHHHHHHHHhC
Confidence            346788999999863 6677777765 66579999999998888764    34321  11  2221    10      02


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~  275 (343)
                      +.+|+|+....-             ...++.+.++|+++ |++++...
T Consensus       264 ~g~Dvvid~~G~-------------~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          264 GGVDYSLDCAGT-------------AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             SCBSEEEESSCC-------------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CCccEEEECCCC-------------HHHHHHHHHHhhcCCCEEEEECC
Confidence            479999874321             12458889999999 99987543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.37  E-value=0.13  Score=47.20  Aligned_cols=91  Identities=20%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCCc
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQF  231 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~f  231 (343)
                      ..++.+||-.|+  |.|..+..+++. |+ +|++++.++..++.+++.    |..  .++..+ .+..       ....+
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~v~~~~-~~~~~~v~~~~~~~g~  228 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD--IVLPLE-EGWAKAVREATGGAGV  228 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEESS-TTHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc--EEecCc-hhHHHHHHHHhCCCCc
Confidence            367899999997  567777777765 76 899999999888887763    322  122222 1111       12369


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+|+....-.              .+..+.++|+++|++++..
T Consensus       229 Dvvid~~g~~--------------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          229 DMVVDPIGGP--------------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             EEEEESCC----------------CHHHHHHTEEEEEEEEEC-
T ss_pred             eEEEECCchh--------------HHHHHHHhhcCCCEEEEEE
Confidence            9999753321              2477889999999998854

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.27  E-value=0.21  Score=45.76  Aligned_cols=92  Identities=21%  Similarity=0.249  Sum_probs=61.5

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-Ccc--------CC
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKL--------ER  229 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-~~~--------~~  229 (343)
                      ..++.+||-+|+  |.|..+..++.. |+ +|+++|.++..++.+++    .|..  .+  .|..+ ...        .+
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~--~~--~d~~~~~~~~~~~~~~~~~  237 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE--VF--IDFTKEKDIVGAVLKATDG  237 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC--EE--EETTTCSCHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc--eE--EecCccHhHHHHHHHHhCC
Confidence            367889999998  467776666654 76 89999999887777664    2322  11  24432 110        22


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+|+|+.+...             ...++.+.+.|+++|++++...
T Consensus       238 ~~D~vi~~~g~-------------~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          238 GAHGVINVSVS-------------EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             CEEEEEECSSC-------------HHHHHHHTTSEEEEEEEEECCC
T ss_pred             CCCEEEECCCc-------------HHHHHHHHHHHhcCCEEEEEeC
Confidence            68999875431             1245888999999999988543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.22  E-value=0.14  Score=47.72  Aligned_cols=95  Identities=17%  Similarity=0.185  Sum_probs=61.4

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc------CCC----CccCC
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD------VLD----TKLER  229 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D------~~~----~~~~~  229 (343)
                      ..++.+||-+|+| .|.++..+++. |+.+|++++.++..++.+++    .|..  .++..+      +.+    .....
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~~~~v~~~~~g~  266 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD--LTLNRRETSVEERRKAIMDITHGR  266 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc--EEEeccccCcchHHHHHHHHhCCC
Confidence            3568899999976 36667777765 64489999999998888774    3432  122211      100    00123


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+|+|+......             ..+..+.++|+++|++++...
T Consensus       267 g~Dvvid~~g~~-------------~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          267 GADFILEATGDS-------------RALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             CEEEEEECSSCT-------------THHHHHHHHEEEEEEEEECCC
T ss_pred             CCcEEEECCCCH-------------HHHHHHHHHHhcCCEEEEEec
Confidence            699999753211             134778899999999988543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.22  E-value=0.24  Score=45.31  Aligned_cols=90  Identities=22%  Similarity=0.263  Sum_probs=61.8

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------c-CC
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-ER  229 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~-~~  229 (343)
                      ..++.+||-+|+  |.|..+..+++. |+ +|+++|.++..++.+++.    |...  +  .|..+..        . ..
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----ga~~--~--~d~~~~~~~~~~~~~~~~~  234 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----GADE--T--VNYTHPDWPKEVRRLTGGK  234 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCSE--E--EETTSTTHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCCE--E--EcCCcccHHHHHHHHhCCC
Confidence            367889999998  677777777765 76 899999999988888642    3221  1  2332211        1 23


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+|+|+.... ..             .++.+.++|+++|++++..
T Consensus       235 ~~d~vi~~~g-~~-------------~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          235 GADKVVDHTG-AL-------------YFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             CEEEEEESSC-SS-------------SHHHHHHHEEEEEEEEESS
T ss_pred             CceEEEECCC-HH-------------HHHHHHHhhccCCEEEEEe
Confidence            7999997543 11             2477888999999988754

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=93.12  E-value=0.16  Score=45.00  Aligned_cols=113  Identities=12%  Similarity=0.034  Sum_probs=62.3

Q ss_pred             ccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-cCCCceEEE-EccCCCCccCCCccEEEECccccccccC---
Q 019324          172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFL-VDDVLDTKLERQFQLVMDKGTLDAIGLH---  246 (343)
Q Consensus       172 GcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-~~~~~i~~~-~~D~~~~~~~~~fD~V~~~~~l~~i~~~---  246 (343)
                      .++.|.+...+.+.....|..+|..-.   .-.++..- ..++...++ ..|+......+.+|+|+++..-.+-..|   
T Consensus       149 ~~~~~~~~~~~~k~~g~~vl~v~~~~~---~p~k~v~wi~Pi~GAt~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQ  225 (320)
T 2hwk_A          149 EHPQSDFSSFVSKLKGRTVLVVGEKLS---VPGKMVDWLSDRPEATFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQ  225 (320)
T ss_dssp             CCCCCCCHHHHHTSSCSEEEEEESCCC---CTTSEEEEEESSTTCSEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHH
T ss_pred             ccCCCCHHHHHhhCCCcEEEEEecccc---cCCceeEeeccCCCceeecccccCCccccCcCCEEEEcCCCCCCCccccc
Confidence            456666666666652225555553210   00000000 001223344 5666665445779999997654443322   


Q ss_pred             -CCChhhHHHHHHHHhhccCCCcEEEEEecCCC---hHHHHHHHH
Q 019324          247 -PDGPLKRIMYWDSVSKLVAPGGLLVITSCNST---KDELVHEVS  287 (343)
Q Consensus       247 -~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~---~~~~~~~~~  287 (343)
                       .|.......++..+.++|+|||.+++-.+...   .+.+...+.
T Consensus       226 C~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~La  270 (320)
T 2hwk_A          226 CEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIA  270 (320)
T ss_dssp             HHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHH
Confidence             11222334567888999999999999777665   556666665

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=93.12  E-value=0.2  Score=47.40  Aligned_cols=75  Identities=23%  Similarity=0.411  Sum_probs=51.2

Q ss_pred             CCeEEEEccCccHHHHHHHhc----C--CCcEEEEeCChHHHHHHHHHHHHcC--C-CceEEEEccCCCCccCCCcc-EE
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTKLERQFQ-LV  234 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~----g--~~~v~gvD~s~~~i~~a~~~~~~~~--~-~~i~~~~~D~~~~~~~~~fD-~V  234 (343)
                      +..|+|+|.|+|.++..+++.    +  ..+++.||+|+...+.-++++....  + .++.+.. +     ++..+. +|
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~-~-----lP~~~~g~i  211 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD-A-----LPERFEGVV  211 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES-S-----CCSCEEEEE
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc-c-----CCccCceEE
Confidence            468999999999987776542    2  2379999999999888887765421  1 2566642 1     222343 77


Q ss_pred             EECcccccccc
Q 019324          235 MDKGTLDAIGL  245 (343)
Q Consensus       235 ~~~~~l~~i~~  245 (343)
                      ++|.+||++.+
T Consensus       212 iANE~fDAlPv  222 (432)
T 4f3n_A          212 VGNEVLDAMPV  222 (432)
T ss_dssp             EEESCGGGSCC
T ss_pred             EeehhhccCce
Confidence            78888877754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.07  E-value=0.3  Score=44.58  Aligned_cols=93  Identities=18%  Similarity=0.195  Sum_probs=62.2

Q ss_pred             ccCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCCc
Q 019324          161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQF  231 (343)
Q Consensus       161 ~~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~f  231 (343)
                      ...++.+||-+|+| .|..+..+++. |+ +|+++|.++..++.+++    .|...    ..|..+...       .+.+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~----~~d~~~~~~~~~~~~~~~~~  231 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGADL----VVNPLKEDAAKFMKEKVGGV  231 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCSE----EECTTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCCE----EecCCCccHHHHHHHHhCCC
Confidence            34678899999986 46666666665 76 89999999998888764    34321    123332211       1468


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |+|+.....          .   ..++.+.++|+++|++++...
T Consensus       232 d~vid~~g~----------~---~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          232 HAAVVTAVS----------K---PAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             EEEEESSCC----------H---HHHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCC----------H---HHHHHHHHHhhcCCEEEEecc
Confidence            998874321          1   235788899999999987543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.05  E-value=1.1  Score=39.11  Aligned_cols=111  Identities=15%  Similarity=0.090  Sum_probs=74.0

Q ss_pred             CCCCeEEEEccC----cc-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTG----NG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG----~G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      .+++++|--|++    -| .++..|++.|+ +|+.+|.++...+.+.+.+...+-.++.++++|+.+...          
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            568899999964    33 35677888887 899999999988888887766654578999999988531          


Q ss_pred             -CCCccEEEECccccccc-c----CCCChhhHH-----------HHHHHHhhccCCCcEEEEEe
Q 019324          228 -ERQFQLVMDKGTLDAIG-L----HPDGPLKRI-----------MYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i~-~----~~~~~~~~~-----------~~l~~~~~~LkpgG~lii~~  274 (343)
                       -+..|+++.+..+.... +    ......+..           ...+.....++.+|.++..+
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis  146 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT  146 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence             25799999875432110 0    011111111           22344566778899888754

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=92.95  E-value=0.2  Score=45.30  Aligned_cols=103  Identities=15%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             CCCeEEEEccCccHHHHHHH----hcC-CC--cEEEEeCCh--------H-HHHHHHHHHHHcC---CC--ceEEEEccC
Q 019324          164 SSWSVLDIGTGNGLLLQELS----KQG-FS--DLTGVDYSE--------D-AINLAQSLANRDG---FS--CIKFLVDDV  222 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la----~~g-~~--~v~gvD~s~--------~-~i~~a~~~~~~~~---~~--~i~~~~~D~  222 (343)
                      +.-+|||+|-|+|.......    +.+ ..  +++.+|..+        . .-+..+.......   ..  .+++..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            34689999999997543322    122 12  456676421        1 1122222222211   01  356788888


Q ss_pred             CCCc--c-CCCccEEEECccccccccCCCChhhH--HHHHHHHhhccCCCcEEEE
Q 019324          223 LDTK--L-ERQFQLVMDKGTLDAIGLHPDGPLKR--IMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       223 ~~~~--~-~~~fD~V~~~~~l~~i~~~~~~~~~~--~~~l~~~~~~LkpgG~lii  272 (343)
                      .+.-  . ...+|+|+..+    +  .|....++  ..+++.+.++++|||++.-
T Consensus       176 ~~~l~~l~~~~~Da~flDg----F--sP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDA----F--SPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECC----S--CTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHhhhcccceeEEEeCC----C--CcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            6642  2 34799999754    2  22222222  4688999999999998774

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=92.89  E-value=1.1  Score=39.81  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             CCCCeEEEEccCc--c---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~--G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      ..++++|-.|++.  |   .++..|++.|+ +|+.++.++...+.+++.....+  ++.++.+|+.+...          
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            4577899999853  3   25667777887 79999999876666665555444  56889999988631          


Q ss_pred             -CCCccEEEECcccccc-----ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 -ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                       -+..|+++.+..+...     .+......+.           ..+++.+...++.+|.++..+
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence             1478999988654321     0011111221           244566777788888888754

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.78  E-value=0.21  Score=45.42  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=60.7

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCC
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  229 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~  229 (343)
                      ..++.+||-+|+  |.|..+..+++. |+ +|++++.++..++.+++    .|..  .++  |..+..         ...
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~--~~~--~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE--YLI--NASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEE--ETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc--EEE--eCCCchHHHHHHHHhCCC
Confidence            367889999994  556677777665 76 89999999988887765    2322  122  222211         134


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+|+|+....-.              .++.+.++|++||++++..
T Consensus       217 g~D~vid~~g~~--------------~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          217 GVDASFDSVGKD--------------TFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             CEEEEEECCGGG--------------GHHHHHHHEEEEEEEEECC
T ss_pred             CceEEEECCChH--------------HHHHHHHHhccCCEEEEEc
Confidence            699999754321              3477888999999998854

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=92.76  E-value=0.24  Score=45.34  Aligned_cols=91  Identities=20%  Similarity=0.210  Sum_probs=60.3

Q ss_pred             CCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCCCcc
Q 019324          164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQFQ  232 (343)
Q Consensus       164 ~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~~fD  232 (343)
                      ++.+||-+|+|. |..+..+++. |+.+|+++|.++..++.+++.    |...  ++  |..+..         ....+|
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~~--~~--~~~~~~~~~~v~~~~~g~g~D  238 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GADY--VI--NPFEEDVVKEVMDITDGNGVD  238 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCSE--EE--CTTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCE--EE--CCCCcCHHHHHHHHcCCCCCC
Confidence            688999999963 6666666665 765899999999888887742    3221  11  222211         123699


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +|+.....             ...++.+.++|+++|++++...
T Consensus       239 ~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          239 VFLEFSGA-------------PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEECSCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCC-------------HHHHHHHHHHHhcCCEEEEEcc
Confidence            99874321             1235788899999999888543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.67  E-value=1.3  Score=39.32  Aligned_cols=110  Identities=15%  Similarity=0.192  Sum_probs=70.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChH-HHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED-AINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~-~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..+++||-.|++.|   .++..|++.|+ +|+.++.+.. ..+.+.+.....+ .++.++.+|+.+...           
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG-VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT-CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45778999998766   35666777786 8999998865 4444555444444 378999999988531           


Q ss_pred             CCCccEEEECcccccc--ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLDAI--GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i--~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                      -+..|+++.+......  .+......+.           ..+++.+.+.++.+|.++..+
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            1478999987543211  0011111221           245567778888888887754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.63  E-value=0.99  Score=35.07  Aligned_cols=65  Identities=23%  Similarity=0.344  Sum_probs=44.8

Q ss_pred             CCeEEEEccCc-c-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEEC
Q 019324          165 SWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  237 (343)
Q Consensus       165 ~~~VLDiGcG~-G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~  237 (343)
                      ..+|+-+|||. | .++..|.+.|. +|+++|.++..++.+++       ..+.++.+|..+...     -..+|+|+..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLED-------EGFDAVIADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH-------TTCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH-------CCCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence            45799999964 2 23334444576 89999999988877764       246788899877531     2468888863

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=92.61  E-value=0.72  Score=39.96  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=67.4

Q ss_pred             CCeEEEEccCcc---HHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----C------C
Q 019324          165 SWSVLDIGTGNG---LLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------R  229 (343)
Q Consensus       165 ~~~VLDiGcG~G---~~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~------~  229 (343)
                      +++||-.|++.|   .++..|++ .|+ +|++++.++...+.+.+.+...+ .++.++.+|+.+...     .      +
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            567887775544   23445566 676 89999999887776666665544 378999999987531     1      3


Q ss_pred             CccEEEECccccccccCCCC-hhhH-----------HHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDG-PLKR-----------IMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~-~~~~-----------~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+|+|+.+............ ..+.           ..+++.+.+.++++|.+++.+.
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence            78999987643322111111 1111           2345666777777788777543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.49  E-value=0.31  Score=44.12  Aligned_cols=90  Identities=18%  Similarity=0.154  Sum_probs=60.0

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCC
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  229 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~  229 (343)
                      ..++.+||-.|+  |.|..+..++.. |+ +|+++|.++..++.+++.    +.. . .  .|..+..         ...
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~-~-~--~~~~~~~~~~~~~~~~~~~  208 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW-Q-V--INYREEDLVERLKEITGGK  208 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS-E-E--EETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC-E-E--EECCCccHHHHHHHHhCCC
Confidence            366889999994  566666666654 76 899999999888877652    322 1 1  1332221         123


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+|+++.+..-              ..++.+.++|+++|++++..
T Consensus       209 ~~D~vi~~~g~--------------~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          209 KVRVVYDSVGR--------------DTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CEEEEEECSCG--------------GGHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEECCch--------------HHHHHHHHHhcCCCEEEEEe
Confidence            69999876431              13478889999999998754

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.46  E-value=0.19  Score=46.22  Aligned_cols=92  Identities=16%  Similarity=0.284  Sum_probs=60.6

Q ss_pred             ccCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc---------C
Q 019324          161 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E  228 (343)
Q Consensus       161 ~~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------~  228 (343)
                      +..++.+||-.|+  |.|..+..++.. |+ +|++++.++..++.+++    .|..  ..  .|..+...         .
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~--~~--~d~~~~~~~~~~~~~~~~  237 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH--EV--FNHREVNYIDKIKKYVGE  237 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EE--EETTSTTHHHHHHHHHCT
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC--EE--EeCCCchHHHHHHHHcCC
Confidence            3467889999997  556666666654 76 89999999988876654    2322  11  23322211         2


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..+|+|+.+..-              ..+....++|+++|++++...
T Consensus       238 ~~~D~vi~~~G~--------------~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          238 KGIDIIIEMLAN--------------VNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             TCEEEEEESCHH--------------HHHHHHHHHEEEEEEEEECCC
T ss_pred             CCcEEEEECCCh--------------HHHHHHHHhccCCCEEEEEec
Confidence            368999875321              134778899999999988643

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.43  E-value=0.59  Score=40.69  Aligned_cols=107  Identities=17%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++...+..   + .++.++.+|+.+...           -
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            45678999998776   35666777787 8999999988877666544   2 378999999988631           1


Q ss_pred             CCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          229 RQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +..|+++.+..+.... +......+.           ..+.+.+...++++|.++..+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            4789999876442211 011112222           234566677777788887753

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=92.37  E-value=1.1  Score=38.93  Aligned_cols=76  Identities=13%  Similarity=0.155  Sum_probs=57.7

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++...+...+.+...+ .++.++.+|+.+...           -
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45678888888766   35666777787 79999999988888777766665 479999999988631           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        88 g~id~lv~nAg~   99 (256)
T 3gaf_A           88 GKITVLVNNAGG   99 (256)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999988654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.33  E-value=1.9  Score=37.19  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=55.4

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC--CCCcc----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~--~~~~~----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+..++.++..|+  .+...          
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            45778999998766   35666777787 8999999988887776655544323788999999  44320          


Q ss_pred             -CCCccEEEECccc
Q 019324          228 -ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -~~~fD~V~~~~~l  240 (343)
                       -+..|+++.+..+
T Consensus        89 ~~g~id~lv~nAg~  102 (252)
T 3f1l_A           89 NYPRLDGVLHNAGL  102 (252)
T ss_dssp             HCSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence             2478999988654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=92.21  E-value=2.3  Score=36.95  Aligned_cols=77  Identities=17%  Similarity=0.082  Sum_probs=57.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-cCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+.. .+..++.++.+|+.+...           
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45778999998776   35667777787 799999999888777766654 333358999999988531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        85 ~g~id~lvnnAg~   97 (265)
T 3lf2_A           85 LGCASILVNNAGQ   97 (265)
T ss_dssp             HCSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1478999988654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.20  E-value=0.67  Score=40.70  Aligned_cols=77  Identities=21%  Similarity=0.263  Sum_probs=56.0

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC------------hHHHHHHHHHHHHcCCCceEEEEccCCCCcc
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s------------~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.+            +..++...+.....+ .++.++.+|+.+...
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG-SRIVARQADVRDRES   88 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-CCEEEEECCTTCHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcC-CeEEEEeCCCCCHHH
Confidence            45778999998766   35667777787 89999987            666666655555555 379999999988631


Q ss_pred             -----------CCCccEEEECcccc
Q 019324          228 -----------ERQFQLVMDKGTLD  241 (343)
Q Consensus       228 -----------~~~fD~V~~~~~l~  241 (343)
                                 -+..|+++.+..+.
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence                       14789999887653

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.13  E-value=0.43  Score=43.97  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=61.9

Q ss_pred             ccCCCCeEEEEc--cCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cCC
Q 019324          161 KYLSSWSVLDIG--TGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LER  229 (343)
Q Consensus       161 ~~~~~~~VLDiG--cG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~~  229 (343)
                      ...++.+||-+|  .|.|..+..+++. |+ +|++++.++..++.+++    .|..  .++  |..+..        ...
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~--~~~--~~~~~~~~~~~~~~~~~  230 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD--RPI--NYKTEPVGTVLKQEYPE  230 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEE--ETTTSCHHHHHHHHCTT
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc--EEE--ecCChhHHHHHHHhcCC
Confidence            346788999999  4677777777765 76 89999999888887765    3432  122  221111        124


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+|+|+....-              ..++.+.++|+++|++++..
T Consensus       231 g~D~vid~~g~--------------~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          231 GVDVVYESVGG--------------AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             CEEEEEECSCT--------------HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCH--------------HHHHHHHHHHhcCCEEEEEe
Confidence            68999874321              24578889999999988854

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=92.11  E-value=1.2  Score=39.49  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=70.8

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC--hHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s--~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.+  ....+...+.....+ .++.++.+|+.+...          
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG-RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT-CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            35778999998766   35666777787 79999887  344555555555555 378899999987531          


Q ss_pred             -CCCccEEEECcccccc--ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 -ERQFQLVMDKGTLDAI--GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i--~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                       -+..|+++.+......  .+......+.           ..+++.+...++++|.+++.+
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence             1478999987654221  0111111221           245567778888888888754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=92.05  E-value=0.35  Score=44.39  Aligned_cols=92  Identities=18%  Similarity=0.225  Sum_probs=61.5

Q ss_pred             ccCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--------CC
Q 019324          161 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------ER  229 (343)
Q Consensus       161 ~~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--------~~  229 (343)
                      ...++.+||-+|+  |.|..+..+++. |+ +|+++|.++..++.+++.    |..  ..+  |..+...        ..
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~~~--~~~~~~~~~~~~~~~~~  234 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK--RGI--NYRSEDFAAVIKAETGQ  234 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHHSS
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC--EEE--eCCchHHHHHHHHHhCC
Confidence            3467889999953  457777777765 76 899999999988888763    322  112  2222111        34


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+|+|+....-.              .+....++|+++|++++...
T Consensus       235 g~Dvvid~~g~~--------------~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          235 GVDIILDMIGAA--------------YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             CEEEEEESCCGG--------------GHHHHHHTEEEEEEEEECCC
T ss_pred             CceEEEECCCHH--------------HHHHHHHHhccCCEEEEEEe
Confidence            699999754321              24778889999999988643

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=92.03  E-value=0.65  Score=50.11  Aligned_cols=76  Identities=12%  Similarity=0.177  Sum_probs=57.1

Q ss_pred             CCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCC------------CC-----
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL------------DT-----  225 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~------------~~-----  225 (343)
                      ...+++|+.||.|.++..+.+.|+ .-+.++|+++.+++..+.|.     +...++..|+.            ..     
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            456899999999999999998886 46899999999999988875     34455555543            11     


Q ss_pred             ccCCCccEEEECccccccc
Q 019324          226 KLERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       226 ~~~~~fD~V~~~~~l~~i~  244 (343)
                      +..+.+|+|+.......+.
T Consensus       925 p~~~~vDvl~GGpPCQ~FS  943 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQGFS  943 (1330)
T ss_dssp             CCTTTCSEEEECCCCTTTC
T ss_pred             cccCccceEEecCCCcccc
Confidence            1124689999887666664

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.03  E-value=0.15  Score=46.64  Aligned_cols=90  Identities=19%  Similarity=0.197  Sum_probs=58.9

Q ss_pred             CCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--------CCCccE
Q 019324          164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------ERQFQL  233 (343)
Q Consensus       164 ~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--------~~~fD~  233 (343)
                      ++.+||-+|+|. |.++..+++. |+.+|+++|.++..++.+++. .    ..  +  .|..+...        ...+|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a----~~--v--~~~~~~~~~~~~~~~~~~g~D~  234 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A----DR--L--VNPLEEDLLEVVRRVTGSGVEV  234 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C----SE--E--ECTTTSCHHHHHHHHHSSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H----Hh--c--cCcCccCHHHHHHHhcCCCCCE
Confidence            688999999853 6666677665 655899999998877776542 1    11  1  12222110        246899


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |+....-             ...++...++|+++|++++...
T Consensus       235 vid~~g~-------------~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          235 LLEFSGN-------------EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEECSCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence            9874321             1235788899999999887543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.02  E-value=0.07  Score=48.52  Aligned_cols=92  Identities=15%  Similarity=0.193  Sum_probs=57.8

Q ss_pred             CCCC-eEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC-CC---CccCCCccEE
Q 019324          163 LSSW-SVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LD---TKLERQFQLV  234 (343)
Q Consensus       163 ~~~~-~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~-~~---~~~~~~fD~V  234 (343)
                      .++. +||-+|+  |.|.++..+++. |+ +|++++.++.-++.+++    .|...+ +-..+. .+   ....+.+|+|
T Consensus       147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~~~~~~~d~v  220 (328)
T 1xa0_A          147 TPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEV-LAREDVMAERIRPLDKQRWAAA  220 (328)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEE-EECC---------CCSCCEEEE
T ss_pred             CCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCcEE-EecCCcHHHHHHHhcCCcccEE
Confidence            4454 7999997  567777777765 76 79999999887777764    343211 111111 00   0012468988


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +....-.              .+....++|+++|++++..
T Consensus       221 id~~g~~--------------~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          221 VDPVGGR--------------TLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             EECSTTT--------------THHHHHHTEEEEEEEEECS
T ss_pred             EECCcHH--------------HHHHHHHhhccCCEEEEEe
Confidence            8643211              2477889999999998753

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=92.01  E-value=1.2  Score=40.23  Aligned_cols=77  Identities=18%  Similarity=0.252  Sum_probs=57.7

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-----------  227 (343)
                      ..+++||-.|++.|.   ++..|++.|+ +|++++.++..++.+.+.+...+. .++.++.+|+.+...           
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            346789999988763   5666777787 899999999888877776655442 278999999988531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        85 ~g~id~lv~nAg~   97 (319)
T 3ioy_A           85 FGPVSILCNNAGV   97 (319)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             CCCCCEEEECCCc
Confidence            2478999988654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.98  E-value=0.43  Score=43.80  Aligned_cols=92  Identities=18%  Similarity=0.142  Sum_probs=60.2

Q ss_pred             ccCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cC
Q 019324          161 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~  228 (343)
                      ...++.+||-.|+  |.|..+..++.. |+ +|+++|.++..++.+++.    |.. . .  .|..+..         ..
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~-~-~--~~~~~~~~~~~~~~~~~~  229 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GAA-A-G--FNYKKEDFSEATLKFTKG  229 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS-E-E--EETTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCc-E-E--EecCChHHHHHHHHHhcC
Confidence            3467889999984  566666666654 76 899999999888887542    322 1 1  2322211         12


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..+|+++.+..-.              .+....++|+++|++++...
T Consensus       230 ~~~d~vi~~~G~~--------------~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          230 AGVNLILDCIGGS--------------YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             SCEEEEEESSCGG--------------GHHHHHHHEEEEEEEEECCC
T ss_pred             CCceEEEECCCch--------------HHHHHHHhccCCCEEEEEec
Confidence            3689998754321              23677889999999988643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.96  E-value=2.4  Score=37.68  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=55.9

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC------------hHHHHHHHHHHHHcCCCceEEEEccCCCCcc
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s------------~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.+            +..++.+.+.+...+ .++.++.+|+.+...
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-RRIIASQVDVRDFDA  103 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcC-CceEEEECCCCCHHH
Confidence            45778999998877   35667777787 89999987            566666665555555 379999999988531


Q ss_pred             -----------CCCccEEEECccc
Q 019324          228 -----------ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -----------~~~fD~V~~~~~l  240 (343)
                                 -+..|+++.+..+
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence                       1478999987654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=91.95  E-value=1.3  Score=38.41  Aligned_cols=109  Identities=12%  Similarity=0.007  Sum_probs=69.9

Q ss_pred             CCCCeEEEEccC--cc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG--~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      .++++||-.|++  .|   .++..|++.|+ +|+.++.+....+.+++.....+  ++.++.+|+.+...          
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHH
Confidence            568899999975  34   24556667786 89999998776666666555444  58899999988631          


Q ss_pred             -CCCccEEEECcccccc-----c-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 -ERQFQLVMDKGTLDAI-----G-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i-----~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                       -+..|+++.+..+...     . .........           ..+++.+...++++|.+++.+
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence             2478999987654321     0 010122222           234566677777788877754

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=91.90  E-value=0.42  Score=43.41  Aligned_cols=90  Identities=16%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCC
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  229 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~  229 (343)
                      ..++.+||-.|+  |.|..+..++.. |+ +|+++|.++..++.+++.    |.. . .  .|..+..         ...
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~~-~-~--~d~~~~~~~~~i~~~~~~~  213 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GCH-H-T--INYSTQDFAEVVREITGGK  213 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS-E-E--EETTTSCHHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC-E-E--EECCCHHHHHHHHHHhCCC
Confidence            367889999995  567776666654 76 899999999888877652    322 1 1  2333221         024


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+|+++.+..-              ..++.+.++|+++|++++..
T Consensus       214 ~~d~vi~~~g~--------------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          214 GVDVVYDSIGK--------------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CEEEEEECSCT--------------TTHHHHHHTEEEEEEEEECC
T ss_pred             CCeEEEECCcH--------------HHHHHHHHhhccCCEEEEEe
Confidence            68999875432              12478889999999988754

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=91.90  E-value=1  Score=39.41  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=60.1

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++++|+.+...           -
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            56788888888777   35677778887 899999999998888877777764 78899999988631           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        85 G~iDiLVNNAG~   96 (255)
T 4g81_D           85 IHVDILINNAGI   96 (255)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            679999988654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.87  E-value=1.4  Score=38.32  Aligned_cols=110  Identities=11%  Similarity=0.077  Sum_probs=70.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEE-eCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gv-D~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+ +.++...+.+.+.+...+ .++.++.+|+.+...           
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG-RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT-SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45778999998776   35666777787 77777 777777776666665555 378999999988631           


Q ss_pred             CCCccEEEECcccc-cc-ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLD-AI-GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~-~i-~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                      -+..|+++.+.... .. .+........           ..+.+.+...++++|.++..+
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            14789999876432 11 1111122221           244566677777778777753

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.83  E-value=1.1  Score=39.72  Aligned_cols=106  Identities=13%  Similarity=0.109  Sum_probs=72.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+   + .++.++++|+.+...           -
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~  101 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G-GGAVGIQADSANLAELDRLYEKVKAEA  101 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C-TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C-CCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            56788999998887   36777788887 8999999998887665543   3 367889999988631           2


Q ss_pred             CCccEEEECcccccc-ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEE
Q 019324          229 RQFQLVMDKGTLDAI-GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i-~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~  273 (343)
                      +..|+++.+...... .+.....++.           ..+.+.+...|+.+|.++..
T Consensus       102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A          102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            578999987644222 1111222222           24456677888888887765

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=91.74  E-value=0.077  Score=47.65  Aligned_cols=87  Identities=16%  Similarity=0.126  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC-Ccc---CCCccEEE
Q 019324          163 LSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKL---ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~-~~~---~~~fD~V~  235 (343)
                      .++.+||-+|+  |.|..+..+++. |+ +|++++.++..++.+++    .|...  .+  |..+ ...   -+.+|+|+
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~~--~~--~~~~~~~~~~~~~~~d~vi  194 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEE--AA--TYAEVPERAKAWGGLDLVL  194 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSE--EE--EGGGHHHHHHHTTSEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCCE--EE--ECCcchhHHHHhcCceEEE
Confidence            56889999998  567777777765 76 89999999988887764    34321  12  2211 111   14689988


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      . ..-.              .++.+.++|+++|++++.
T Consensus       195 d-~g~~--------------~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          195 E-VRGK--------------EVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             E-CSCT--------------THHHHHTTEEEEEEEEEC
T ss_pred             E-CCHH--------------HHHHHHHhhccCCEEEEE
Confidence            7 3221              247888999999998874

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=91.61  E-value=0.32  Score=43.89  Aligned_cols=89  Identities=19%  Similarity=0.235  Sum_probs=59.2

Q ss_pred             eEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECcccc
Q 019324          167 SVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLD  241 (343)
Q Consensus       167 ~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~~l~  241 (343)
                      +||-.|+  |.|.++..+++. |+ +|++++.++.-.+.+++.    |.+.+ +-..+.....  ..+.+|+|+....  
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~v-i~~~~~~~~~~~~~~~~d~v~d~~g--  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GANRI-LSRDEFAESRPLEKQLWAGAIDTVG--  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TCSEE-EEGGGSSCCCSSCCCCEEEEEESSC--
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCCEE-EecCCHHHHHhhcCCCccEEEECCC--
Confidence            4999997  567888888876 76 899999999988888763    33211 1111111111  1357898876321  


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                               .   ..++.+.++|+++|++++...
T Consensus       221 ---------~---~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          221 ---------D---KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             ---------H---HHHHHHHHTEEEEEEEEECCC
T ss_pred             ---------c---HHHHHHHHHHhcCCEEEEEec
Confidence                     1   156889999999999988643

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=91.56  E-value=0.12  Score=47.47  Aligned_cols=91  Identities=15%  Similarity=0.207  Sum_probs=59.6

Q ss_pred             CCCeEEEEccCc-cHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEE----ccCC-CCccCCCccEE
Q 019324          164 SSWSVLDIGTGN-GLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV----DDVL-DTKLERQFQLV  234 (343)
Q Consensus       164 ~~~~VLDiGcG~-G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~----~D~~-~~~~~~~fD~V  234 (343)
                      ++.+||-+|+|. |.++..+++.   |+ +|+++|.++..++.+++.    |.+.  ++.    .|.. .......+|+|
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~~~~~~~~~~g~g~D~v  242 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GADY--VSEMKDAESLINKLTDGLGASIA  242 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TCSE--EECHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CCCE--EeccccchHHHHHhhcCCCccEE
Confidence            788999999964 6666666654   55 799999999988888753    3221  111    1110 01112379999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +....-.             ..++.+.++|+++|++++..
T Consensus       243 id~~g~~-------------~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          243 IDLVGTE-------------ETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EESSCCH-------------HHHHHHHHHEEEEEEEEECC
T ss_pred             EECCCCh-------------HHHHHHHHHhhcCCEEEEeC
Confidence            9743211             24578889999999998754

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=91.54  E-value=1.4  Score=38.49  Aligned_cols=111  Identities=17%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeC-ChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~-s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..++++|-.|++.|.   ++..|++.|+ +|+.++. +....+...+.+...+ .++.++.+|+.+...           
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG-SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456789988887663   5666777787 7888765 4555666666555555 378999999988531           


Q ss_pred             CCCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEEec
Q 019324          228 ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      -+..|+++.+..+.... +......+.           ..+.+.+.+.++++|.+++.+.
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            14789999876542211 011111222           2445677788888888877543

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=91.52  E-value=0.47  Score=43.71  Aligned_cols=87  Identities=20%  Similarity=0.288  Sum_probs=56.3

Q ss_pred             CCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCCh---HHHHHHHHHHHHcCCCceEEEEccCCC-Ccc-----CCCccE
Q 019324          165 SWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSE---DAINLAQSLANRDGFSCIKFLVDDVLD-TKL-----ERQFQL  233 (343)
Q Consensus       165 ~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~---~~i~~a~~~~~~~~~~~i~~~~~D~~~-~~~-----~~~fD~  233 (343)
                      +.+||-+|+|. |..+..+++. |+ +|+++|.++   ..++.+++.    |.   +.+  | .+ ...     .+.+|+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~----ga---~~v--~-~~~~~~~~~~~~~~~d~  249 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET----KT---NYY--N-SSNGYDKLKDSVGKFDV  249 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH----TC---EEE--E-CTTCSHHHHHHHCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh----CC---cee--c-hHHHHHHHHHhCCCCCE
Confidence            88999999842 4455555554 77 899999998   767766642    32   222  3 22 110     146899


Q ss_pred             EEECccccccccCCCChhhHHHHH-HHHhhccCCCcEEEEEec
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYW-DSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l-~~~~~~LkpgG~lii~~~  275 (343)
                      |+......             ..+ +.+.++|+++|.+++...
T Consensus       250 vid~~g~~-------------~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          250 IIDATGAD-------------VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             EEECCCCC-------------THHHHHHGGGEEEEEEEEECSC
T ss_pred             EEECCCCh-------------HHHHHHHHHHHhcCCEEEEEec
Confidence            98753321             134 778899999999988543

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=91.41  E-value=1.5  Score=38.59  Aligned_cols=76  Identities=14%  Similarity=0.207  Sum_probs=55.2

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeC-ChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~-s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++. ++..++...+.+...+ .++.++.+|+.+...           
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG-ARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT-CCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45678998898776   35666777787 8999995 7776766666665555 379999999998642           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence            1478999987654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=91.32  E-value=0.076  Score=49.20  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=60.8

Q ss_pred             CCCeEEEEc-c-CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCCccE
Q 019324          164 SSWSVLDIG-T-GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQFQL  233 (343)
Q Consensus       164 ~~~~VLDiG-c-G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~fD~  233 (343)
                      ++.+||-+| + |.|.++..+++. +..+|+++|.++.-++.+++    .|.+.  ++  |..+..       ..+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~--vi--~~~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHH--VI--DHSKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSE--EE--CTTSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCE--EE--eCCCCHHHHHHHhcCCCceE
Confidence            578999998 4 458888888885 44599999999998888865    34321  11  211110       1357999


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      |+....-             ...++.+.++|+++|++++.
T Consensus       243 vid~~g~-------------~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTHT-------------DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSCH-------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCCc-------------hhhHHHHHHHhcCCCEEEEE
Confidence            8874221             12458889999999999886

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=91.25  E-value=0.32  Score=44.05  Aligned_cols=92  Identities=23%  Similarity=0.264  Sum_probs=58.7

Q ss_pred             CCCC-eEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC-CC-Cc--cCCCccEE
Q 019324          163 LSSW-SVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LD-TK--LERQFQLV  234 (343)
Q Consensus       163 ~~~~-~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~-~~-~~--~~~~fD~V  234 (343)
                      .++. +||-+||  |.|.++..+++. |+ +|++++.++.-++.+++.    |...+ +-..+. .+ ..  ....+|+|
T Consensus       148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l----Ga~~v-~~~~~~~~~~~~~~~~~~~d~v  221 (330)
T 1tt7_A          148 SPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASEV-ISREDVYDGTLKALSKQQWQGA  221 (330)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSEE-EEHHHHCSSCCCSSCCCCEEEE
T ss_pred             CCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCcEE-EECCCchHHHHHHhhcCCccEE
Confidence            4454 8999997  567777777765 76 799999998878777652    33221 111111 11 11  13468988


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +....-              ..+....++|++||++++..
T Consensus       222 id~~g~--------------~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          222 VDPVGG--------------KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EESCCT--------------HHHHHHHTTEEEEEEEEECC
T ss_pred             EECCcH--------------HHHHHHHHhhcCCCEEEEEe
Confidence            864221              13578889999999998754

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=91.24  E-value=0.5  Score=44.42  Aligned_cols=45  Identities=18%  Similarity=0.111  Sum_probs=38.3

Q ss_pred             CCeEEEEccCccHHHHHHHhcC--CCc----EEEEeCChHHHHHHHHHHHH
Q 019324          165 SWSVLDIGTGNGLLLQELSKQG--FSD----LTGVDYSEDAINLAQSLANR  209 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g--~~~----v~gvD~s~~~i~~a~~~~~~  209 (343)
                      ..+|||+.||.|.+...+.+.|  +.-    |.++|+++.+++.-+.+...
T Consensus        10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            4599999999999999998876  334    88999999999998888753

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=91.13  E-value=0.29  Score=44.96  Aligned_cols=93  Identities=13%  Similarity=0.139  Sum_probs=60.4

Q ss_pred             ccCCC--CeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--------
Q 019324          161 KYLSS--WSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------  227 (343)
Q Consensus       161 ~~~~~--~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--------  227 (343)
                      +..++  .+||-.|+  |.|..+..++.. |+.+|+++|.++..++.+++.   .|.. .   ..|..+...        
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~-~---~~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD-A---AINYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS-E---EEETTTSCHHHHHHHHC
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc-e---EEecCchHHHHHHHHhc
Confidence            34667  89999998  456666666554 655899999998877776642   2322 1   123332211        


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+.+|+++.+..-              ..++.+.++|+++|++++..
T Consensus       228 ~~~~d~vi~~~G~--------------~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          228 PAGVDVYFDNVGG--------------NISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             TTCEEEEEESCCH--------------HHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCEEEECCCH--------------HHHHHHHHHhccCcEEEEEC
Confidence            2368998875331              34578889999999998753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=90.99  E-value=0.84  Score=41.48  Aligned_cols=94  Identities=21%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  229 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~  229 (343)
                      ...++.+||-.|+|. |.++..+++. |+..++++|.++.-++.+++    .|..  ..+  |..+..         ...
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~--~~i--~~~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM--QTF--NSSEMSAPQMQSVLRELR  228 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS--EEE--ETTTSCHHHHHHHHGGGC
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe--EEE--eCCCCCHHHHHHhhcccC
Confidence            336789999999975 4455556655 77678999999998888875    3432  222  222211         124


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .+|+|+.....          .   ..++...++|++||.+++...
T Consensus       229 g~d~v~d~~G~----------~---~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          229 FNQLILETAGV----------P---QTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             SSEEEEECSCS----------H---HHHHHHHHHCCTTCEEEECCC
T ss_pred             Ccccccccccc----------c---chhhhhhheecCCeEEEEEec
Confidence            57888764221          1   245788899999999988644

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=90.90  E-value=0.12  Score=46.40  Aligned_cols=62  Identities=24%  Similarity=0.308  Sum_probs=42.0

Q ss_pred             ceEEEEccCCCCc---cCCCccEEEECccccccc-c--CCCC----------hhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          214 CIKFLVDDVLDTK---LERQFQLVMDKGTLDAIG-L--HPDG----------PLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       214 ~i~~~~~D~~~~~---~~~~fD~V~~~~~l~~i~-~--~~~~----------~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++.++++|+.+..   .+++||+|+++..+.... .  .+..          ......++.++.++|||||.+++...
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            6789999988732   257999999998764221 0  0000          01124567899999999999988654

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=90.70  E-value=1.2  Score=38.93  Aligned_cols=109  Identities=13%  Similarity=0.132  Sum_probs=69.0

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEE-eCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gv-D~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.+ ..++...+...+.....+ .++.++.+|+.+...           -
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAG-GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4678998898776   35667777787 67766 556666666666665555 378999999988531           1


Q ss_pred             CCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          229 RQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +..|+++.+..+.... +........           ..+++.+.+.++++|.++..+
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            4789999876542211 011111111           234566777777888888764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=90.68  E-value=0.41  Score=43.77  Aligned_cols=92  Identities=22%  Similarity=0.321  Sum_probs=60.6

Q ss_pred             ccCCCCeEEEEccC--ccHHHHHHHh-c-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cC
Q 019324          161 KYLSSWSVLDIGTG--NGLLLQELSK-Q-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGcG--~G~~~~~la~-~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~  228 (343)
                      ...++.+||-.|+|  .|..+..++. . |+ +|+++|.++..++.+++.    |.. . ++  |..+..        ..
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~-~-~~--~~~~~~~~~~~~~~~~  237 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GAD-Y-VI--NASMQDPLAEIRRITE  237 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCS-E-EE--ETTTSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCC-E-Ee--cCCCccHHHHHHHHhc
Confidence            34678999999998  4555555554 4 66 899999999888887642    322 1 11  222211        12


Q ss_pred             -CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          229 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       229 -~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                       +.+|+|+....-.             ..++.+.++|+++|++++..
T Consensus       238 ~~~~d~vi~~~g~~-------------~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          238 SKGVDAVIDLNNSE-------------KTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TSCEEEEEESCCCH-------------HHHTTGGGGEEEEEEEEECC
T ss_pred             CCCceEEEECCCCH-------------HHHHHHHHHHhcCCEEEEEC
Confidence             4799998753321             24578889999999998854

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=90.66  E-value=2.8  Score=36.66  Aligned_cols=109  Identities=13%  Similarity=0.145  Sum_probs=69.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC-hHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s-~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.. ....+...+.+...+ .++.++.+|+.+...           
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG-GRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45778999998776   35667777787 78888654 455555555555555 378999999988531           


Q ss_pred             CCCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEE
Q 019324          228 ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~  273 (343)
                      -+..|+++.+..+.... +......+.           ..+++.+.+.|+++|.+++.
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i  164 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI  164 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            14789999876542210 011111211           24556677788888887775

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=90.55  E-value=1.8  Score=37.90  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=56.0

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++...+...+.+...+. ++.++.+|+.+...           -
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            34678888787665   35566777787 899999999888877776666553 78899999987531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       104 g~iD~lvnnAg~  115 (270)
T 3ftp_A          104 GALNVLVNNAGI  115 (270)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=90.52  E-value=0.58  Score=42.69  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=58.9

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCCc
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQF  231 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~f  231 (343)
                      ..++.+||-+|+  |.|.++..+++. |+ +|+++ .++..++.+++.    |.   ..+. +-.+..       ....+
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~l----Ga---~~i~-~~~~~~~~~~~~~~~~g~  217 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDL----GA---TPID-ASREPEDYAAEHTAGQGF  217 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHH----TS---EEEE-TTSCHHHHHHHHHTTSCE
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHc----CC---CEec-cCCCHHHHHHHHhcCCCc
Confidence            367899999994  457777777766 76 89999 888877777652    32   2222 211111       12479


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+|+....-              ..+....++|+++|.+++..
T Consensus       218 D~vid~~g~--------------~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          218 DLVYDTLGG--------------PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             EEEEESSCT--------------HHHHHHHHHEEEEEEEEESC
T ss_pred             eEEEECCCc--------------HHHHHHHHHHhcCCeEEEEc
Confidence            999874321              24578888999999998753

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=90.47  E-value=0.19  Score=48.00  Aligned_cols=93  Identities=13%  Similarity=0.149  Sum_probs=61.2

Q ss_pred             ccCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC------------
Q 019324          161 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT------------  225 (343)
Q Consensus       161 ~~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~------------  225 (343)
                      ...++.+||-+|+  |.|.++..+++. |+ ++++++.++.-++.+++.    |...  ++...-.+.            
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~d~~~~~~~~~~~~~  297 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAM----GAEA--IIDRNAEGYRFWKDENTQDPK  297 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCCE--EEETTTTTCCSEEETTEECHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhh----CCcE--EEecCcCcccccccccccchH
Confidence            3467899999997  467777777776 65 899999999888888653    3221  111111000            


Q ss_pred             ------------ccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          226 ------------KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       226 ------------~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                                  .....+|+|+....-              ..+....++|++||++++..
T Consensus       298 ~~~~~~~~i~~~t~g~g~Dvvid~~G~--------------~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          298 EWKRFGKRIRELTGGEDIDIVFEHPGR--------------ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEEECSCH--------------HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEcCCc--------------hhHHHHHHHhhCCcEEEEEe
Confidence                        012479999864221              24578889999999998854

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=90.27  E-value=1.1  Score=39.61  Aligned_cols=77  Identities=19%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+...+.++.+|+.+...           -
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  109 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF  109 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34678888887665   34556667787 899999999887777665544332346899999988631           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       110 g~iD~lvnnAG~  121 (281)
T 4dry_A          110 ARLDLLVNNAGS  121 (281)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.97  E-value=4.3  Score=35.24  Aligned_cols=63  Identities=17%  Similarity=0.217  Sum_probs=47.0

Q ss_pred             CeEEEEccCccHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          166 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~----~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      .+||-.||  |.++..+++    .|+ +|++++-++........       .+++++.+|+.+.. -..+|+|+....
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~-~~~~d~vi~~a~   72 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS-LDGVTHLLISTA   72 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC-CTTCCEEEECCC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-------CCCeEEEecccccc-cCCCCEEEECCC
Confidence            58999995  777666554    465 89999999876554432       37899999999866 567899987654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=89.84  E-value=3.4  Score=37.08  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=54.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC------------hHHHHHHHHHHHHcCCCceEEEEccCCCCcc
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s------------~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.+            +..++...+.....+ .++.++.+|+.+...
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG-RRIIARQADVRDLAS  121 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHH
Confidence            45678888888766   35667777787 89999986            566666555555555 378999999988531


Q ss_pred             -----------CCCccEEEECccc
Q 019324          228 -----------ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -----------~~~fD~V~~~~~l  240 (343)
                                 -+..|+++.+..+
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence                       1478999988654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=89.76  E-value=1.9  Score=36.85  Aligned_cols=73  Identities=12%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCCcc
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~fD  232 (343)
                      .++++||-.|++.|   .++..|++.|+ +|+.++.++..++...+...    .++.+..+|+.+...       -+..|
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~id   86 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK----DNYTIEVCNLANKEECSNLISKTSNLD   86 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence            56788998888766   35566677786 89999999887776665442    378899999887531       24789


Q ss_pred             EEEECccc
Q 019324          233 LVMDKGTL  240 (343)
Q Consensus       233 ~V~~~~~l  240 (343)
                      +++.+...
T Consensus        87 ~li~~Ag~   94 (249)
T 3f9i_A           87 ILVCNAGI   94 (249)
T ss_dssp             EEEECCC-
T ss_pred             EEEECCCC
Confidence            99987654

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=89.70  E-value=2.2  Score=37.60  Aligned_cols=110  Identities=14%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChH-------HHHHHHHHHHHcCCCceEEEEccCCCCcc-----
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED-------AINLAQSLANRDGFSCIKFLVDDVLDTKL-----  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~-------~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++.       .++.+.+.....+ .++.++.+|+.+...     
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAG-GQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHT-SEEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHH
Confidence            34678999998776   35666777787 8999998875       3444444444444 379999999988531     


Q ss_pred             ------CCCccEEEECccccccc-cCCCChhhHH-----------HHHHHHhhccC--CCcEEEEEe
Q 019324          228 ------ERQFQLVMDKGTLDAIG-LHPDGPLKRI-----------MYWDSVSKLVA--PGGLLVITS  274 (343)
Q Consensus       228 ------~~~fD~V~~~~~l~~i~-~~~~~~~~~~-----------~~l~~~~~~Lk--pgG~lii~~  274 (343)
                            -+..|+++.+..+.... +.........           .+.+.+...|+  .+|.++..+
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~is  151 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLS  151 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence                  14799999876543221 1111222222           34455666665  356766643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=89.61  E-value=1.3  Score=38.82  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=61.0

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|.+.|.   .+..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++++|+.+...           -
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            457889999988874   5677778887 899999999999888888877774 79999999988631           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.|..+
T Consensus        83 G~iDiLVNNAGi   94 (254)
T 4fn4_A           83 SRIDVLCNNAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            579999988643

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=89.40  E-value=2  Score=37.82  Aligned_cols=73  Identities=14%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .+++||-.|++.|   .++..|++.|+ +|++++.++..++...+.+...+..++.++.+|+.+...           -+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4678888887654   24455666786 899999998887776665544443478899999987531           14


Q ss_pred             CccEEEEC
Q 019324          230 QFQLVMDK  237 (343)
Q Consensus       230 ~fD~V~~~  237 (343)
                      .+|+++.+
T Consensus       106 ~iD~li~n  113 (286)
T 1xu9_A          106 GLDMLILN  113 (286)
T ss_dssp             SCSEEEEC
T ss_pred             CCCEEEEC
Confidence            78999987

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=89.34  E-value=0.33  Score=44.66  Aligned_cols=92  Identities=17%  Similarity=0.201  Sum_probs=57.5

Q ss_pred             CCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCCCC-ccCCCccEEEECcc
Q 019324          164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDT-KLERQFQLVMDKGT  239 (343)
Q Consensus       164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~-~~~~~fD~V~~~~~  239 (343)
                      ++.+||-+|+| .|.++..+++. |+ +|+++|.++..++.+++   ..|.+.+  +.. +.... ...+.+|+|+....
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~~v--i~~~~~~~~~~~~~g~D~vid~~g  253 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQ---DLGADDY--VIGSDQAKMSELADSLDYVIDTVP  253 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHT---TSCCSCE--EETTCHHHHHHSTTTEEEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---HcCCcee--eccccHHHHHHhcCCCCEEEECCC
Confidence            78899999975 35566666665 76 89999999887777663   2343221  111 10000 01246999987433


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      -..             .++...++|+++|++++..
T Consensus       254 ~~~-------------~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          254 VHH-------------ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             SCC-------------CSHHHHTTEEEEEEEEECS
T ss_pred             ChH-------------HHHHHHHHhccCCEEEEeC
Confidence            211             1266788999999998854

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=89.10  E-value=2.8  Score=36.26  Aligned_cols=73  Identities=16%  Similarity=0.215  Sum_probs=53.2

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++...+...+..   + .++.++.+|+.+...           -
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---G-PAAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            34678999997766   35666777787 8999999988776655543   2 378899999987531           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        81 g~id~lv~~Ag~   92 (259)
T 4e6p_A           81 GGLDILVNNAAL   92 (259)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999987654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=88.77  E-value=0.28  Score=49.47  Aligned_cols=107  Identities=19%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-----------CC--CcEEEEeCChHHHHHHHH--------------HHHHc-----C
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-----------GF--SDLTGVDYSEDAINLAQS--------------LANRD-----G  211 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-----------g~--~~v~gvD~s~~~i~~a~~--------------~~~~~-----~  211 (343)
                      +.-+|||+|.|+|...+.+.+.           ..  -+++.+|..|-..+.+++              .....     |
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            4569999999999776655442           11  268999995533333332              11111     1


Q ss_pred             C---------CceEEEEccCCCCc--c----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          212 F---------SCIKFLVDDVLDTK--L----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       212 ~---------~~i~~~~~D~~~~~--~----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +         -.+++..+|+.+.-  +    ...+|.++..+.--.-  .|+  .=...++..+.++++|||.+...+
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~--np~--~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK--NPD--MWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC----CCT--TCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC--Chh--hhhHHHHHHHHHHhCCCCEEEecc
Confidence            0         14677788876532  1    3679999975522111  011  112357899999999999866433

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=88.67  E-value=3.7  Score=36.03  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=54.1

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+..   + .++.++.+|+.+...           -
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---G-CGAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---C-SSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---C-CcceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45678898888776   35667777887 8999999988776665544   3 378899999988631           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       102 g~iD~lvnnAg~  113 (277)
T 3gvc_A          102 GGVDKLVANAGV  113 (277)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=88.42  E-value=3.3  Score=36.32  Aligned_cols=110  Identities=16%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChH-HHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED-AINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~-~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++. ..+.+.+.+...+ .++.++.+|+.+...           
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG-SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34678888887655   24555666786 8999998754 3444444444444 378899999987531           


Q ss_pred             CCCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                      -+..|+++.+..+.... +......+.           ..+++.+.+.|+.+|.+++.+
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            14789999876542210 000111222           234466677777778877753

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=88.37  E-value=4.7  Score=35.29  Aligned_cols=73  Identities=21%  Similarity=0.174  Sum_probs=53.2

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++...+..   + .++.++.+|+.+...           -
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---G-SKAFGVRVDVSSAKDAESMVEKTTAKW   99 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            44678998898766   35666777787 8999999987766655442   3 378899999988531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       100 g~iD~lv~nAg~  111 (277)
T 4dqx_A          100 GRVDVLVNNAGF  111 (277)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            478999988654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=88.31  E-value=5.8  Score=34.51  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=53.4

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-----------C
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++||-.|++.|   .++..|++.|+ +|++++.++..++...+.+...+. .++.++.+|+.+...           -
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            4678888887655   24555666786 899999998877776665555443 358889999987531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +.+|+|+.+..+
T Consensus       110 g~iD~vi~~Ag~  121 (279)
T 1xg5_A          110 SGVDICINNAGL  121 (279)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999987653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=88.27  E-value=6.9  Score=29.63  Aligned_cols=95  Identities=14%  Similarity=0.096  Sum_probs=53.3

Q ss_pred             CCeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----c-CCCccEEEEC
Q 019324          165 SWSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMDK  237 (343)
Q Consensus       165 ~~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~-~~~fD~V~~~  237 (343)
                      +.+|+-+|||.=  .++..|.+.|. +|+.+|.++..++.+++.   .   .+.++.+|..+..    . -..+|+|+..
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~---~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I---DALVINGDCTKIKTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHh---c---CcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence            357888888542  12333444565 899999998877655532   1   3556777765432    1 2468988864


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      -..+          .....+..+.+.++++ .+++...+.
T Consensus        77 ~~~~----------~~~~~~~~~~~~~~~~-~ii~~~~~~  105 (140)
T 1lss_A           77 TGKE----------EVNLMSSLLAKSYGIN-KTIARISEI  105 (140)
T ss_dssp             CSCH----------HHHHHHHHHHHHTTCC-CEEEECSST
T ss_pred             eCCc----------hHHHHHHHHHHHcCCC-EEEEEecCH
Confidence            2211          1222344555667775 455443333

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.19  E-value=5.1  Score=32.42  Aligned_cols=93  Identities=18%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             CCeEEEEccCc-cH-HHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----c--CCCccEEE
Q 019324          165 SWSVLDIGTGN-GL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L--ERQFQLVM  235 (343)
Q Consensus       165 ~~~VLDiGcG~-G~-~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~--~~~fD~V~  235 (343)
                      +.+|+-+|||. |. ++..|.+. |. .|+++|.++..++.+++    .   .+.++.+|..+..    .  -..+|+|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~---g~~~~~gd~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----E---GRNVISGDATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----T---TCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----C---CCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence            56899999864 32 33445555 76 89999999988776653    2   3456777775531    1  24678888


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..-.         ...... .+-...+.+.|++.++....
T Consensus       111 ~~~~---------~~~~~~-~~~~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          111 LAMP---------HHQGNQ-TALEQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             ECCS---------SHHHHH-HHHHHHHHTTCCSEEEEEES
T ss_pred             EeCC---------ChHHHH-HHHHHHHHHCCCCEEEEEEC
Confidence            6321         111112 22345556677777776544

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=88.14  E-value=2.2  Score=37.08  Aligned_cols=110  Identities=10%  Similarity=0.117  Sum_probs=67.3

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCCh---HHHHHHHHHHHHcCCCceEEEEccCCCCcc---------
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE---DAINLAQSLANRDGFSCIKFLVDDVLDTKL---------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~---~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~---------  227 (343)
                      ..++++|-.|++.|.   ++..|++.|+ +|+.++.+.   ..++.+.+.+...+ .++.++.+|+.+...         
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQG-AKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTT-CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHH
Confidence            457789988887663   4556666776 788887654   34444444444444 378999999988631         


Q ss_pred             --CCCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 --ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 --~~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                        -+..|+++.+..+.... +........           ..+++.+...|+++|.+++.+
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is  147 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA  147 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence              14789999876532211 011111221           234556667777788887753

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.13  E-value=2  Score=36.71  Aligned_cols=75  Identities=15%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++...+...+.+...+ .++.++.+|+.+...           .+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG-FKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3568888887665   35666677786 89999999988888777776666 379999999987531           24


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999987654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=87.85  E-value=0.69  Score=42.66  Aligned_cols=91  Identities=18%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             CCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEEC
Q 019324          164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDK  237 (343)
Q Consensus       164 ~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~~  237 (343)
                      ++.+||-+|+|. |.++..+++. |+ +|++++.++..++.+++.   .|..  .++  |..+..    ..+.+|+|+..
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~---lGa~--~v~--~~~~~~~~~~~~~~~D~vid~  258 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKN---FGAD--SFL--VSRDQEQMQAAAGTLDGIIDT  258 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHT---SCCS--EEE--ETTCHHHHHHTTTCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh---cCCc--eEE--eccCHHHHHHhhCCCCEEEEC
Confidence            788999999753 5556666654 76 899999998877776532   3332  111  222110    12469999875


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .....             .++...++|+++|+++....
T Consensus       259 ~g~~~-------------~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          259 VSAVH-------------PLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             CSSCC-------------CSHHHHHHEEEEEEEEECCC
T ss_pred             CCcHH-------------HHHHHHHHHhcCCEEEEEcc
Confidence            33211             12567788999999887543

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=87.81  E-value=8.3  Score=33.87  Aligned_cols=61  Identities=15%  Similarity=0.110  Sum_probs=44.0

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEe-CChHHHHHHHHHHH-HcCCCceEEEEccCCCCc
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVD-YSEDAINLAQSLAN-RDGFSCIKFLVDDVLDTK  226 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD-~s~~~i~~a~~~~~-~~~~~~i~~~~~D~~~~~  226 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++ .++..++.+.+.+. ..+ .++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcC-CeeEEEEeecCCcc
Confidence            4567887787665   34556666786 899999 99887776666554 334 37899999998765

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=87.74  E-value=4.7  Score=31.63  Aligned_cols=98  Identities=12%  Similarity=0.095  Sum_probs=57.7

Q ss_pred             CCeEEEEccCccHHHHHH----HhcCCCcEEEEeCC-hHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEE
Q 019324          165 SWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLV  234 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~l----a~~g~~~v~gvD~s-~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V  234 (343)
                      ..+|+=+||  |.++..+    .+.|. .|+.+|.+ +..++..+....    ..+.++.+|..+...     -...|+|
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~----~~~~~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc----CCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence            357888887  5554444    44465 89999997 454444443221    257889999876431     2468888


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      ++.-.-          ......+....+.+.|...++....+...
T Consensus        76 i~~~~~----------d~~n~~~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           76 LALSDN----------DADNAFVVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSC----------HHHHHHHHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEecCC----------hHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence            863211          12223445566677777777665444433

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=87.69  E-value=1.1  Score=40.71  Aligned_cols=88  Identities=19%  Similarity=0.303  Sum_probs=58.5

Q ss_pred             CCCeEEEEc-cC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCCccE
Q 019324          164 SSWSVLDIG-TG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQFQL  233 (343)
Q Consensus       164 ~~~~VLDiG-cG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~fD~  233 (343)
                      ++.+||-+| +| .|.++..+++. |+ +|++++.++.-++.+++.    |.+.  ++  |..+..       ....+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--vi--~~~~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GADI--VL--NHKESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TCSE--EE--CTTSCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCcE--EE--ECCccHHHHHHHhCCCCccE
Confidence            688999994 43 56677777765 76 899999999988888763    3221  11  111110       1346999


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      |+....-             ...++.+.++|+++|+++..
T Consensus       221 v~d~~g~-------------~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          221 VFCTFNT-------------DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEESSCH-------------HHHHHHHHHHEEEEEEEEES
T ss_pred             EEECCCc-------------hHHHHHHHHHhccCCEEEEE
Confidence            9874221             13457888999999999764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=87.57  E-value=1.3  Score=41.83  Aligned_cols=95  Identities=17%  Similarity=0.114  Sum_probs=61.1

Q ss_pred             ccCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCce-EEEEccCCCC-----------
Q 019324          161 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDT-----------  225 (343)
Q Consensus       161 ~~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i-~~~~~D~~~~-----------  225 (343)
                      ...++.+||-.|+  |.|.++..+++. |+ ++++++.++.-++.+++    .|...+ .....|....           
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchh
Confidence            3467899999997  456777777766 65 89999999988888764    343221 1111111100           


Q ss_pred             ----c------cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          226 ----K------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       226 ----~------~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                          .      ....+|+|+....-              ..++...++|++||.+++..
T Consensus       292 ~~~~~~~v~~~~g~g~Dvvid~~G~--------------~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          292 GRKLAKLVVEKAGREPDIVFEHTGR--------------VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHSSCCSEEEECSCH--------------HHHHHHHHHSCTTCEEEESC
T ss_pred             hhHHHHHHHHHhCCCceEEEECCCc--------------hHHHHHHHHHhcCCEEEEEe
Confidence                0      13468999874321              23477888999999998854

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=87.54  E-value=3.8  Score=35.73  Aligned_cols=108  Identities=14%  Similarity=0.071  Sum_probs=62.1

Q ss_pred             CCCeEEEEccC--cc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          164 SSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       164 ~~~~VLDiGcG--~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++||-.|++  .|   .++..|++.|+ +|+.++.++...+.+++.....+  ++.++.+|+.+...           
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            36789999975  33   24455566676 89999988752222222222222  47789999987531           


Q ss_pred             CCCccEEEECcccccc-----ccCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                      -+..|+++.+..+...     .+......+.           ..+++.+...|+++|.++..+
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  144 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS  144 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence            1478999987654221     0111112222           234455666666678877754

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=87.41  E-value=3.9  Score=35.52  Aligned_cols=72  Identities=24%  Similarity=0.233  Sum_probs=50.6

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+   + .++.++.+|+.+...           -+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAAL---E-AEAIAVVADVSDPKAVEAVFAEALEEFG   79 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---C-SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---c-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3568888888665   35566667786 8999999987666554432   2 368899999987531           13


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        80 ~iD~lvnnAg~   90 (263)
T 2a4k_A           80 RLHGVAHFAGV   90 (263)
T ss_dssp             CCCEEEEGGGG
T ss_pred             CCcEEEECCCC
Confidence            68999987654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=87.34  E-value=6.3  Score=34.16  Aligned_cols=74  Identities=14%  Similarity=0.083  Sum_probs=51.5

Q ss_pred             CCeEEEEccCcc---HHHHHHHhcCCCcEEEEeC-ChHHHHHHHHHHHHc-CCCceEEEEccCCCC----cc--------
Q 019324          165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRD-GFSCIKFLVDDVLDT----KL--------  227 (343)
Q Consensus       165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~-s~~~i~~a~~~~~~~-~~~~i~~~~~D~~~~----~~--------  227 (343)
                      ++++|-.|++.|   .++..|++.|+ +|+.++. ++..++.+.+.+... + .++.++.+|+.+.    ..        
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCCccccHHHHHHHHHHH
Confidence            567887777655   24555666786 8999999 887776665555433 4 3789999999987    31        


Q ss_pred             ---CCCccEEEECccc
Q 019324          228 ---ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ---~~~fD~V~~~~~l  240 (343)
                         -+..|+++.+..+
T Consensus        89 ~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           89 FRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence               1368999988654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=87.17  E-value=2.4  Score=37.07  Aligned_cols=75  Identities=15%  Similarity=0.251  Sum_probs=54.7

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------------C
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------E  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------------~  228 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...            .
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG-LNVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678998887665   34556667786 89999999887776666555444 378899999987531            1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        98 g~id~lv~nAg~  109 (273)
T 1ae1_A           98 GKLNILVNNAGV  109 (273)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            678999988654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=87.11  E-value=4  Score=35.40  Aligned_cols=77  Identities=13%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCCcc-------CCCc
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL-------ERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~~~-------~~~f  231 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++...+.+...+ ...+.++.+|+.+...       -+..
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            34678888887665   34566677786 89999999888777666554432 1367888999987531       2578


Q ss_pred             cEEEECccc
Q 019324          232 QLVMDKGTL  240 (343)
Q Consensus       232 D~V~~~~~l  240 (343)
                      |+++.+...
T Consensus        87 d~lv~nAg~   95 (267)
T 3t4x_A           87 DILINNLGI   95 (267)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999987643

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=86.98  E-value=5.7  Score=33.91  Aligned_cols=74  Identities=14%  Similarity=0.188  Sum_probs=50.9

Q ss_pred             CCeEEEEccCcc---HHHHHHHhcCCCcEEEEeC-ChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~-s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      ++++|-.|++.|   .++..|++.|+ +|+.++. ++...+...+.+...+ .++.++.+|+.+...           -+
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKG-VDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            467787777655   34556667786 7888876 5566666666555555 378899999988531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        82 ~id~lv~nAg~   92 (246)
T 3osu_A           82 SLDVLVNNAGI   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.84  E-value=2.1  Score=37.08  Aligned_cols=77  Identities=21%  Similarity=0.281  Sum_probs=58.0

Q ss_pred             CCCCeEEEEcc-Ccc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGT-GNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGc-G~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..+++||-.|+ |.|   .++..|++.|+ +|+.++.++..++.+.+.+...+..++.++.+|+.+...           
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            45778999987 555   35667778887 799999999888877776655543589999999988531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        99 ~g~id~li~~Ag~  111 (266)
T 3o38_A           99 AGRLDVLVNNAGL  111 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCcEEEECCCc
Confidence            1478999988654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=86.84  E-value=1.2  Score=40.80  Aligned_cols=94  Identities=15%  Similarity=0.148  Sum_probs=54.3

Q ss_pred             ccCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChH---HHHHHHHHHHHcCCCceEEEEc------cCCCCccC
Q 019324          161 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSED---AINLAQSLANRDGFSCIKFLVD------DVLDTKLE  228 (343)
Q Consensus       161 ~~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~---~i~~a~~~~~~~~~~~i~~~~~------D~~~~~~~  228 (343)
                      +..++.+||-+|+  |.|.++..+++. |+..+..++.++.   ..+.++    ..|...  ++..      ++.+....
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~~~~~  237 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAEH--VITEEELRRPEMKNFFKD  237 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCSE--EEEHHHHHSGGGGGTTSS
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCcE--EEecCcchHHHHHHHHhC
Confidence            3467899999997  567888888876 7644455555443   233443    345322  2221      12211111


Q ss_pred             -CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          229 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       229 -~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                       ..+|+|+..-.-          .    .+....++|+++|++++..
T Consensus       238 ~~~~Dvvid~~g~----------~----~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          238 MPQPRLALNCVGG----------K----SSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SCCCSEEEESSCH----------H----HHHHHHTTSCTTCEEEECC
T ss_pred             CCCceEEEECCCc----------H----HHHHHHHhhCCCCEEEEEe
Confidence             248998864221          1    1245789999999998863

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=86.76  E-value=3.8  Score=35.41  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=48.0

Q ss_pred             CCCCeEEEEccC--cc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----C----
Q 019324          163 LSSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E----  228 (343)
Q Consensus       163 ~~~~~VLDiGcG--~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~----  228 (343)
                      ..++++|-.|++  .|   .++..|++.|+ +|+.++.++..-+.+++.....+  ++.++.+|+.+...     .    
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~   82 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKE   82 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHHHH
Confidence            346789999986  33   24455566686 79999998752223333222222  47889999987531     1    


Q ss_pred             --CCccEEEECccc
Q 019324          229 --RQFQLVMDKGTL  240 (343)
Q Consensus       229 --~~fD~V~~~~~l  240 (343)
                        +..|+++.+..+
T Consensus        83 ~~g~iD~lv~~Ag~   96 (261)
T 2wyu_A           83 AFGGLDYLVHAIAF   96 (261)
T ss_dssp             HHSSEEEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence              378999987654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.71  E-value=3.1  Score=34.93  Aligned_cols=98  Identities=8%  Similarity=-0.026  Sum_probs=59.0

Q ss_pred             eEEEEccCccHHHHHHH----hcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEEC
Q 019324          167 SVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  237 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la----~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~  237 (343)
                      +|+=+|+  |.++..++    +.|. .|+.+|.++..++...+.      .++.++.+|..+...     -...|+|++.
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKK------LKATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHH------SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH------cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            5677776  55555444    4465 899999999988765542      156789999887531     2568888863


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  283 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~  283 (343)
                      -.-          ......+..+.+.+.|...++....+....+.+
T Consensus        73 ~~~----------d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l  108 (218)
T 3l4b_C           73 TPR----------DEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIF  108 (218)
T ss_dssp             CSC----------HHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHH
T ss_pred             cCC----------cHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHH
Confidence            211          122234455556666666666544444333333

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=86.61  E-value=7.1  Score=37.17  Aligned_cols=95  Identities=17%  Similarity=0.260  Sum_probs=58.8

Q ss_pred             CCeEEEEccCc-c-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-------cC------C--CceEEEEccCCCCcc
Q 019324          165 SWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG------F--SCIKFLVDDVLDTKL  227 (343)
Q Consensus       165 ~~~VLDiGcG~-G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-------~~------~--~~i~~~~~D~~~~~~  227 (343)
                      -.+|.-||+|. | .++..++..|+ .|+.+|.++..++.+++....       .+      .  ....+ ..|...   
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~---  111 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE---  111 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG---
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH---
Confidence            45799999987 3 35566677776 899999999988887653321       01      0  01222 344321   


Q ss_pred             CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      -...|+|+..-.        ........+++++...++|+.+++.
T Consensus       112 ~~~aDlVIeaVp--------e~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          112 LSTVDLVVEAVF--------EDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             GTTCSEEEECCC--------SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HCCCCEEEEcCC--------CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence            235788886321        2222334677888888998876654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=86.57  E-value=3.2  Score=36.03  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=58.5

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           -
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG-RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45778999998777   35667777887 89999999988888777776665 379999999988631           2


Q ss_pred             CCccEEEECcc
Q 019324          229 RQFQLVMDKGT  239 (343)
Q Consensus       229 ~~fD~V~~~~~  239 (343)
                      +..|+++.+..
T Consensus        87 g~id~lv~nAg   97 (264)
T 3ucx_A           87 GRVDVVINNAF   97 (264)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            47899998763

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=86.48  E-value=2.7  Score=36.07  Aligned_cols=76  Identities=16%  Similarity=0.230  Sum_probs=57.9

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..+++||-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+...           -
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35678999998766   35666777787 79999999998888777776655 378999999988531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            378999987654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=86.46  E-value=0.45  Score=43.29  Aligned_cols=64  Identities=17%  Similarity=0.157  Sum_probs=43.6

Q ss_pred             ceEEEEccCCCC-c--cCCCccEEEECcccccccc-CCCC------hhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          214 CIKFLVDDVLDT-K--LERQFQLVMDKGTLDAIGL-HPDG------PLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       214 ~i~~~~~D~~~~-~--~~~~fD~V~~~~~l~~i~~-~~~~------~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ...++++|..+. .  .+++||+|++...+....- +.+.      .......+.++.++|+|||.+++.....
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            578899998653 2  2578999999887643210 0000      1235577889999999999999976543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=86.41  E-value=0.79  Score=45.97  Aligned_cols=108  Identities=18%  Similarity=0.272  Sum_probs=62.9

Q ss_pred             CCCeEEEEccCccHHHHHHHhc------------CC-CcEEEEeC---ChHHHHHHHH-----------HHHHcCC----
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ------------GF-SDLTGVDY---SEDAINLAQS-----------LANRDGF----  212 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~------------g~-~~v~gvD~---s~~~i~~a~~-----------~~~~~~~----  212 (343)
                      +.-+|||+|-|+|.......+.            +. -+++++|.   ++..+..+-.           .......    
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            3469999999999765544332            11 15899999   6666653322           2211110    


Q ss_pred             ----------CceEEEEccCCCCc--c----CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          213 ----------SCIKFLVDDVLDTK--L----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       213 ----------~~i~~~~~D~~~~~--~----~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                                -.+++..+|+.+.-  .    ...||+|+..+.-...  .|  ..=...++..+.++++|||.+...+.
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~--np--~~w~~~~~~~l~~~~~~g~~~~t~~~  220 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK--NP--DMWTQNLFNAMARLARPGGTLATFTS  220 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG--CG--GGSCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC--Ch--hhhhHHHHHHHHHHhCCCCEEEeccC
Confidence                      13556667765431  1    3579999975522111  00  01123678999999999998765433

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=86.40  E-value=2  Score=37.14  Aligned_cols=76  Identities=12%  Similarity=0.099  Sum_probs=58.2

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----C-----C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E-----R  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~-----~  229 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+...     .     +
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG-GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            34678999998877   35667777787 89999999988888777776665 379999999988631     1     4


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        83 ~id~lv~nAg~   93 (252)
T 3h7a_A           83 PLEVTIFNVGA   93 (252)
T ss_dssp             CEEEEEECCCC
T ss_pred             CceEEEECCCc
Confidence            78999987654

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=86.26  E-value=3  Score=36.42  Aligned_cols=76  Identities=17%  Similarity=0.182  Sum_probs=53.0

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHH-------HHHHHHHHHHcCCCceEEEEccCCCCcc-----
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDA-------INLAQSLANRDGFSCIKFLVDDVLDTKL-----  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~-------i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.+...       ++...+.....+ .++.++.+|+.+...     
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAG-GQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHT-SEEEEEECCTTCHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHH
Confidence            34678999998877   35667777887 89999988642       343333343444 378999999988631     


Q ss_pred             ------CCCccEEEECccc
Q 019324          228 ------ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ------~~~fD~V~~~~~l  240 (343)
                            -+..|+++.+..+
T Consensus        82 ~~~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCc
Confidence                  1478999988654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=86.23  E-value=2.7  Score=36.31  Aligned_cols=75  Identities=13%  Similarity=0.204  Sum_probs=54.0

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------------C
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------E  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------------~  228 (343)
                      .+++||-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...            .
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678998887655   34556667786 89999999887776665554444 378899999987531            1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        86 g~id~lv~~Ag~   97 (260)
T 2ae2_A           86 GKLNILVNNAGI   97 (260)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            579999987654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=85.89  E-value=1.9  Score=37.87  Aligned_cols=76  Identities=13%  Similarity=0.151  Sum_probs=56.8

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------CC
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ER  229 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------~~  229 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++...+.+.+.+...+ .++.++.+|+.+...          .+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG-GTAQELAGDLSEAGAGTDLIERAEAIA  108 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT-CCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45678888887766   35666677787 89999999887777776666555 379999999988641          14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+...
T Consensus       109 ~iD~lvnnAg~  119 (275)
T 4imr_A          109 PVDILVINASA  119 (275)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=85.89  E-value=6.5  Score=34.43  Aligned_cols=75  Identities=8%  Similarity=0.075  Sum_probs=51.7

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCCh-HHHHHHHHHHH-HcCCCceEEEEccCCC----Ccc-------
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE-DAINLAQSLAN-RDGFSCIKFLVDDVLD----TKL-------  227 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~-~~i~~a~~~~~-~~~~~~i~~~~~D~~~----~~~-------  227 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++ ..++.+.+.+. ..+ .++.++.+|+.+    ...       
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~~~~~v~~~~~~   99 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERS-NTAVVCQADLTNSNVLPASCEEIINS   99 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcC-CceEEEEeecCCccCCHHHHHHHHHH
Confidence            4567888887665   34556666786 899999987 66655555443 334 378999999998    320       


Q ss_pred             ----CCCccEEEECccc
Q 019324          228 ----ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ----~~~fD~V~~~~~l  240 (343)
                          -+..|+++.+..+
T Consensus       100 ~~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          100 CFRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHhcCCCCEEEECCCC
Confidence                1478999988654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=85.76  E-value=1.7  Score=39.04  Aligned_cols=90  Identities=18%  Similarity=0.096  Sum_probs=56.9

Q ss_pred             ccCCCCeEEEEc-c-CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-c---CCCccE
Q 019324          161 KYLSSWSVLDIG-T-GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-L---ERQFQL  233 (343)
Q Consensus       161 ~~~~~~~VLDiG-c-G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~---~~~fD~  233 (343)
                      +..++.+||-+| + |.|.++..+++. |+ +|++++ ++...+.+++    .|.+.  ++  |..+.. .   -..+|+
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~----lGa~~--~i--~~~~~~~~~~~~~g~D~  218 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA----LGAEQ--CI--NYHEEDFLLAISTPVDA  218 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH----HTCSE--EE--ETTTSCHHHHCCSCEEE
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH----cCCCE--EE--eCCCcchhhhhccCCCE
Confidence            346789999986 4 457778778776 76 899998 4444665554    34321  22  222211 1   246899


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+..-.-              ..+....++|+++|+++...
T Consensus       219 v~d~~g~--------------~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          219 VIDLVGG--------------DVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             EEESSCH--------------HHHHHHGGGEEEEEEEEECC
T ss_pred             EEECCCc--------------HHHHHHHHhccCCCEEEEeC
Confidence            8863221              12278899999999998764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=85.63  E-value=9.1  Score=33.38  Aligned_cols=74  Identities=11%  Similarity=0.032  Sum_probs=47.0

Q ss_pred             CCCeEEEEccC--cc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          164 SSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       164 ~~~~VLDiGcG--~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++||-.|++  .|   .++..|++.|+ +|+.++.++..-+.+++.....+  ++.++.+|+.+...           
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46789988875  33   24455666686 89999998752222332222222  46788999987531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        97 ~g~iD~lv~~Ag~  109 (285)
T 2p91_A           97 WGSLDIIVHSIAY  109 (285)
T ss_dssp             TSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1478999988654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=85.35  E-value=2.6  Score=31.02  Aligned_cols=65  Identities=18%  Similarity=0.200  Sum_probs=44.1

Q ss_pred             CCeEEEEccCccHHHH----HHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEE
Q 019324          165 SWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD  236 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~----~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~  236 (343)
                      ..+|+-+|+  |.++.    .|.+.|..+|+++|.++..++.++.       ..+.+...|+.+..    .-..+|+|+.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR-------MGVATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT-------TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-------CCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence            458999999  44444    4445573489999999887766551       35678888887642    1246899887


Q ss_pred             Cc
Q 019324          237 KG  238 (343)
Q Consensus       237 ~~  238 (343)
                      ..
T Consensus        76 ~~   77 (118)
T 3ic5_A           76 AA   77 (118)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=85.35  E-value=0.61  Score=42.47  Aligned_cols=97  Identities=18%  Similarity=0.115  Sum_probs=58.1

Q ss_pred             cCCCCeEEEEccCcc-HHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCc-eEEEEccCCCC----ccCCCccEE
Q 019324          162 YLSSWSVLDIGTGNG-LLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT----KLERQFQLV  234 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G-~~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~-i~~~~~D~~~~----~~~~~fD~V  234 (343)
                      ..++.+||-+|+|.+ .++..+++ .+..+|+++|.++.-++.+++.    |... +.....|..+.    .....+|.+
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~  236 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GADVTINSGDVNPVDEIKKITGGLGVQSA  236 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCSEEEEC-CCCHHHHHHHHTTSSCEEEE
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCeEEEeCCCCCHHHHhhhhcCCCCceEE
Confidence            367889999999865 34444444 4445999999999887777653    3221 11111121110    012346666


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +....-             ...+....+.|+++|.+++...
T Consensus       237 ~~~~~~-------------~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          237 IVCAVA-------------RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             EECCSC-------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEeccC-------------cchhheeheeecCCceEEEEec
Confidence            653221             1245788899999999888543

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=85.33  E-value=6.6  Score=34.01  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=52.2

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEE-eCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gv-D~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++||-.|++.|   .++..|++.|+ +|+.+ +.++...+...+.+...+ .++.++.+|+.+...           -
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESG-GEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            4567888787665   24556666787 67665 778877777766666555 378999999987531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       103 g~id~li~nAg~  114 (272)
T 4e3z_A          103 GRLDGLVNNAGI  114 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=85.12  E-value=6.5  Score=33.66  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=50.0

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++...+.+   + .++.++.+|+.+...           -+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---G-ERSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---C-TTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---C-CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3567888777655   24555666786 8999999987766554433   3 378899999987531           13


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        80 ~id~lv~~Ag~   90 (253)
T 1hxh_A           80 TLNVLVNNAGI   90 (253)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            67999987654

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=85.06  E-value=14  Score=33.46  Aligned_cols=104  Identities=11%  Similarity=0.100  Sum_probs=66.7

Q ss_pred             CCCeEEEEccCccHHHHHHHhcC--CCcEEEEeCChHHHHHHHHHHHHc-----------------------CCCceEEE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRD-----------------------GFSCIKFL  218 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g--~~~v~gvD~s~~~i~~a~~~~~~~-----------------------~~~~i~~~  218 (343)
                      +...|+-+|||-=.....+...+  ...++=+|+ |..++.=++.+...                       ...+..++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            46789999999988888887652  226777777 44444322222210                       12478899


Q ss_pred             EccCCCCc----------c-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          219 VDDVLDTK----------L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       219 ~~D~~~~~----------~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .+|+.+..          + ....-++++-+++.++.     +.....+++.+.+...+|..+++.
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~-----~~~~~~ll~~ia~~f~~~~~i~yE  229 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMT-----PEQSANLLKWAANSFERAMFINYE  229 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-----HHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCC-----HHHHHHHHHHHHHhCCCceEEEEe
Confidence            99998731          1 23456888888888873     466677888888776554444443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=84.94  E-value=5.5  Score=34.40  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=51.2

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc-CCCceEEEEccCCCCcc-----------C
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~-~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .++++|-.|++.|   .++..|++.|+ +|++++.++...+.+.+.+... .-.++.++.+|+.+...           -
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            3568998887655   34556667786 8999999987666554443321 11368899999987531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        85 g~id~lv~~Ag~   96 (267)
T 2gdz_A           85 GRLDILVNNAGV   96 (267)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999987653

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=84.82  E-value=3.7  Score=35.32  Aligned_cols=72  Identities=13%  Similarity=0.080  Sum_probs=50.3

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++...+.+   + .++.++.+|+.+...           -+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---G-DAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4678898888665   35566677786 8999999987665544332   2 368889999987531           13


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        79 ~iD~lv~nAg~   89 (254)
T 1hdc_A           79 SVDGLVNNAGI   89 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=84.78  E-value=6.1  Score=34.31  Aligned_cols=73  Identities=16%  Similarity=0.141  Sum_probs=53.5

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++...+..   + .++.++.+|+.+...           -
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASV---G-RGAVHHVVDLTNEVSVRALIDFTIDTF   83 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHH---C-TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---C-CCeEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45678999898766   35667777787 8999999987766655543   3 378899999987531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        84 g~id~lv~nAg~   95 (271)
T 3tzq_B           84 GRLDIVDNNAAH   95 (271)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=84.61  E-value=5.4  Score=33.88  Aligned_cols=74  Identities=12%  Similarity=0.137  Sum_probs=50.1

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----C------C
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------R  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~------~  229 (343)
                      ++++||-.|++.|   .++..|++.|+ +|++++.++...+...+.....  .++.++.+|+.+...     .      +
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcc--CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4567887777554   24555666686 8999999987766555443221  378999999987531     1      3


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      .+|+++.+...
T Consensus        82 ~id~li~~Ag~   92 (251)
T 1zk4_A           82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999987654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=84.58  E-value=3.5  Score=32.55  Aligned_cols=98  Identities=14%  Similarity=0.081  Sum_probs=54.3

Q ss_pred             CCCCeEEEEccCc-cH-HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEE
Q 019324          163 LSSWSVLDIGTGN-GL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~-~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~  235 (343)
                      .++.+|+-+|||. |. ++..|...|. +|+++|.++..++.+++   .   ..+.++.+|..+...     -..+|+|+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~---~g~~~~~~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---E---FSGFTVVGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---T---CCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---c---CCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence            5578999999864 32 2333444576 89999999876544331   1   134566677544211     13588888


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..-.-          ......+..+.+.+.+...++....+.
T Consensus        90 ~~~~~----------~~~~~~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           90 AFTND----------DSTNFFISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             ECSSC----------HHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred             EEeCC----------cHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            63221          122223344555556666666554333

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=84.51  E-value=0.65  Score=42.64  Aligned_cols=96  Identities=10%  Similarity=0.079  Sum_probs=54.2

Q ss_pred             cCCC-CeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc------cCCCC----c-
Q 019324          162 YLSS-WSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD------DVLDT----K-  226 (343)
Q Consensus       162 ~~~~-~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~------D~~~~----~-  226 (343)
                      ..++ .+||-+|+  |.|.++..+++. |+ +++++.-++..+...++.+...|...  ++..      |+.+.    . 
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHHHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeE--EEecCccchHHHHHHHHHHhh
Confidence            3567 89999987  467777777776 76 78887655443111112222344322  2211      11110    0 


Q ss_pred             -cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          227 -LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       227 -~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                       ....+|+|+....-          .   .. ....++|+++|++++..
T Consensus       241 ~~~~g~Dvvid~~G~----------~---~~-~~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          241 QSGGEAKLALNCVGG----------K---SS-TGIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HHTCCEEEEEESSCH----------H---HH-HHHHHTSCTTCEEEECC
T ss_pred             ccCCCceEEEECCCc----------h---hH-HHHHHHhccCCEEEEec
Confidence             12468999874221          1   12 36679999999998854

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=84.40  E-value=2  Score=37.61  Aligned_cols=76  Identities=12%  Similarity=0.127  Sum_probs=57.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           -
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVG-HDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45778888887666   35666777787 89999999988888777766655 378999999988631           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       102 g~iD~lv~nAg~  113 (271)
T 4ibo_A          102 IDVDILVNNAGI  113 (271)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999988654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=84.31  E-value=3.3  Score=38.87  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=59.6

Q ss_pred             CCeEEEEccCc-cH-HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEEC
Q 019324          165 SWSVLDIGTGN-GL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  237 (343)
Q Consensus       165 ~~~VLDiGcG~-G~-~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~  237 (343)
                      ..+|+-+|||. |. ++..|...|. .|+++|.++..++.+++       ..+.++.+|..+...     -...|+|++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~-------~g~~vi~GDat~~~~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRK-------FGMKVFYGDATRMDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHH-------TTCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHh-------CCCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence            45788888864 22 2333444565 89999999999988874       246689999988642     2568888763


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      -.         . ......+....+.+.|...++.-.
T Consensus        76 ~~---------~-~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           76 ID---------D-PQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             CS---------S-HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CC---------C-hHHHHHHHHHHHHhCCCCeEEEEE
Confidence            21         1 122234455666778887776643

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=84.21  E-value=3.6  Score=35.04  Aligned_cols=77  Identities=9%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccC--CCCcc----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~--~~~~~----------  227 (343)
                      .+++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+..++.++..|+  .+...          
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            45678888888665   34566677787 8999999999888888777766645788888887  33210          


Q ss_pred             -CCCccEEEECccc
Q 019324          228 -ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -~~~fD~V~~~~~l  240 (343)
                       -+..|+++.+...
T Consensus        91 ~~g~id~lv~nAg~  104 (247)
T 3i1j_A           91 EFGRLDGLLHNASI  104 (247)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence             1478999987654

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=84.16  E-value=2.8  Score=38.51  Aligned_cols=91  Identities=15%  Similarity=0.113  Sum_probs=57.9

Q ss_pred             CCCCeEEEEccC--ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------cCCCccE
Q 019324          163 LSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQL  233 (343)
Q Consensus       163 ~~~~~VLDiGcG--~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------~~~~fD~  233 (343)
                      .++.+||-+|++  .|.++..+++. |+ +|+++. ++.-++.+++    .|..  .++...-.+..      ..+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS----RGAE--EVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS--EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH----cCCc--EEEECCCchHHHHHHHHccCCccE
Confidence            567899999983  78888888876 66 788885 7777776654    3432  12221111110      1345999


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhcc-CCCcEEEEEe
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITS  274 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~L-kpgG~lii~~  274 (343)
                      |+..-.-          .   ..++.+.+.| ++||++++..
T Consensus       235 v~d~~g~----------~---~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALDCITN----------V---ESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEESSCS----------H---HHHHHHHHHSCTTCEEEEESS
T ss_pred             EEECCCc----------h---HHHHHHHHHhhcCCCEEEEEe
Confidence            9874221          1   2347778888 6999998754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=84.00  E-value=3  Score=36.29  Aligned_cols=76  Identities=12%  Similarity=0.163  Sum_probs=55.9

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH-cCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~-~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+.. .+ .++.++.+|+.+...           
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45678888888766   35666777787 799999998888777665544 34 379999999998742           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        96 ~g~id~lv~nAg~  108 (266)
T 4egf_A           96 FGGLDVLVNNAGI  108 (266)
T ss_dssp             HTSCSEEEEECCC
T ss_pred             cCCCCEEEECCCc
Confidence            1478999987643

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=83.90  E-value=3  Score=36.07  Aligned_cols=76  Identities=11%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..+++||-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           -
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG-GEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC-CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            34678888887665   34556666787 79999999988888877776665 378999999987631           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       105 g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 GRCDVLVNNAGV  116 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            468999987654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=83.87  E-value=3.6  Score=36.03  Aligned_cols=76  Identities=13%  Similarity=0.137  Sum_probs=56.0

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           -
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG-HDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34678999998766   35666777787 79999999988887777666555 379999999988531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       100 g~id~lv~nAg~  111 (279)
T 3sju_A          100 GPIGILVNSAGR  111 (279)
T ss_dssp             CSCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            478999987654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.82  E-value=3.1  Score=36.06  Aligned_cols=77  Identities=17%  Similarity=0.144  Sum_probs=57.0

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+..++.++.+|+.+...           -
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            45678888887665   35566677787 899999999888877776665553478999999988531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        87 g~id~lvnnAg~   98 (262)
T 3pk0_A           87 GGIDVVCANAGV   98 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=83.30  E-value=8.4  Score=35.02  Aligned_cols=76  Identities=16%  Similarity=0.181  Sum_probs=53.8

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHH-------HHHHHHHHHHcCCCceEEEEccCCCCcc-----
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDA-------INLAQSLANRDGFSCIKFLVDDVLDTKL-----  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~-------i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----  227 (343)
                      ..+++||-.|++.|   .++..|++.|+ +|+.++.++..       ++.+.+.+...+ .++.++.+|+.+...     
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~  120 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG-GKALPCIVDVRDEQQISAAV  120 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHH
Confidence            45789999998776   35667777786 89999988653       444444444445 378899999988631     


Q ss_pred             ------CCCccEEEECccc
Q 019324          228 ------ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ------~~~fD~V~~~~~l  240 (343)
                            -+..|+++.+..+
T Consensus       121 ~~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence                  1479999988654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=83.09  E-value=2.8  Score=38.59  Aligned_cols=91  Identities=21%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------CCCcc
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQ  232 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------~~~fD  232 (343)
                      ..++.+||-.|+  |.|.++..+++. |+ +|++++ ++...+.+++    .|.+.  ++  |..+...      ...+|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~~--v~--~~~~~~~~~~~~~~~g~D  250 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRK----LGADD--VI--DYKSGSVEEQLKSLKPFD  250 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCSE--EE--ETTSSCHHHHHHTSCCBS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHH----cCCCE--EE--ECCchHHHHHHhhcCCCC
Confidence            467889999993  467777777765 75 899999 6666666543    34321  12  2222111      14689


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +|+....-.            ...+....++|++||++++..
T Consensus       251 ~vid~~g~~------------~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          251 FILDNVGGS------------TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             EEEESSCTT------------HHHHGGGGBCSSSCCEEEESC
T ss_pred             EEEECCCCh------------hhhhHHHHHhhcCCcEEEEeC
Confidence            998743211            013467788999999998754

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=82.98  E-value=5.6  Score=34.71  Aligned_cols=75  Identities=12%  Similarity=0.115  Sum_probs=54.6

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|.   .+..|++.|+ +|+.+|.++...+.+.+... .+ .++.++.+|+.+...           -
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQ-RQ-PRATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHH-HC-TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHh-cC-CCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            568899999998884   5677888887 89999988765554444333 33 378899999988531           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        82 G~iDiLVNnAGi   93 (258)
T 4gkb_A           82 GRLDGLVNNAGV   93 (258)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            689999998754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=82.86  E-value=3.5  Score=35.98  Aligned_cols=74  Identities=16%  Similarity=0.146  Sum_probs=55.9

Q ss_pred             CCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCC
Q 019324          165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ  230 (343)
Q Consensus       165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~  230 (343)
                      ++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           -+.
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG-GTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            567888888766   35666777787 89999999988888777776655 378899999987531           147


Q ss_pred             ccEEEECccc
Q 019324          231 FQLVMDKGTL  240 (343)
Q Consensus       231 fD~V~~~~~l  240 (343)
                      .|+++.+..+
T Consensus        82 iD~lVnnAG~   91 (264)
T 3tfo_A           82 IDVLVNNAGV   91 (264)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999987654

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=82.66  E-value=3  Score=35.72  Aligned_cols=110  Identities=8%  Similarity=0.076  Sum_probs=66.9

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEE-eCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gv-D~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|-.|++.|   .++..|++.|+ +|+.+ .-+....+...+.+...+ .++.++.+|+.+...           
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNG-GSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhcC-CceEEEecCcCCHHHHHHHHHHHHHH
Confidence            34678888888766   35666677786 67664 666666666665555555 378899999987531           


Q ss_pred             ------CCCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEEe
Q 019324          228 ------ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 ------~~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~  274 (343)
                            .+..|+++.+..+.... +........           ..+++.+...|+++|.+++.+
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~is  147 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINIS  147 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeC
Confidence                  02489999876542211 011111221           234455666777788877754

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=82.63  E-value=5.3  Score=35.02  Aligned_cols=77  Identities=10%  Similarity=0.141  Sum_probs=54.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeC-ChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~-s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++. ++..++...+.+....-.++.++.+|+.+...           
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            34678999998766   35666777787 8999998 66666666555544322478999999987531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus       102 ~g~iD~lv~nAg~  114 (281)
T 3v2h_A          102 FGGADILVNNAGV  114 (281)
T ss_dssp             TSSCSEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            2478999987654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=82.61  E-value=5.3  Score=34.13  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=53.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----C------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~------  228 (343)
                      ..+++||-.|++.|   .++..|+++|+ +|++++.++...+...+.+...+ .++.++.+|+.+...     .      
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEG-HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            34678998887655   24555666786 89999999877766655555444 378999999987531     1      


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +.+|+|+.+...
T Consensus        89 ~~id~vi~~Ag~  100 (260)
T 3awd_A           89 GRVDILVACAGI  100 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999987653

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=82.52  E-value=1.5  Score=39.88  Aligned_cols=91  Identities=18%  Similarity=0.116  Sum_probs=52.9

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------cCCCcc
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQ  232 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------~~~~fD  232 (343)
                      ..++.+||-.|+  |.|.++..+++. |...|++++ ++.-.+.++     .|...  ++. +-.+..      ..+.+|
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~~--~~~-~~~~~~~~~~~~~~~g~D  210 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVTH--LFD-RNADYVQEVKRISAEGVD  210 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSSE--EEE-TTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCcE--EEc-CCccHHHHHHHhcCCCce
Confidence            367899999998  356777788776 445899998 554444443     23321  222 111110      135799


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +|+....-.              .+....++|+++|++++...
T Consensus       211 vv~d~~g~~--------------~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          211 IVLDCLCGD--------------NTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             EEEEECC---------------------CTTEEEEEEEEEEC-
T ss_pred             EEEECCCch--------------hHHHHHHHhhcCCEEEEECC
Confidence            999632111              12678899999999998643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=82.49  E-value=5.3  Score=34.71  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=54.5

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..+++||-.|++.|   .++..|++.|+ +|++++.++..++...+.+...+ .++.++.+|+.+...           -
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKAEI  106 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC-CeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            34678998887655   24555666686 89999999887777666665555 378999999987531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +.+|+|+.+...
T Consensus       107 g~iD~li~~Ag~  118 (272)
T 1yb1_A          107 GDVSILVNNAGV  118 (272)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            478999987654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=82.23  E-value=12  Score=32.89  Aligned_cols=107  Identities=20%  Similarity=0.251  Sum_probs=62.6

Q ss_pred             CeEEEEccCcc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc---------CC---------CceEEEEccCCCC
Q 019324          166 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD---------GF---------SCIKFLVDDVLDT  225 (343)
Q Consensus       166 ~~VLDiGcG~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~---------~~---------~~i~~~~~D~~~~  225 (343)
                      .+|.=||+|+=  .++..++..|+ +|+.+|.++..++.+++.....         +.         .++.+ ..|+.+ 
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~-   81 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ-   81 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH-
Confidence            47888888752  34555566676 8999999999988887653211         11         01232 222221 


Q ss_pred             ccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          226 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       226 ~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                       .-...|+|+..-.        ........+++++...++|+.+++-.+......++..
T Consensus        82 -~~~~aDlVi~av~--------~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~  131 (283)
T 4e12_A           82 -AVKDADLVIEAVP--------ESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG  131 (283)
T ss_dssp             -HTTTCSEEEECCC--------SCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH
T ss_pred             -HhccCCEEEEecc--------CcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence             1245788886321        2223445677889999999876654333334444443

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=82.10  E-value=4.6  Score=35.48  Aligned_cols=76  Identities=17%  Similarity=0.171  Sum_probs=56.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+...           -
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG-GQAIALEADVSDELQMRNAVRDLVLKF  103 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34678998898776   35666777787 89999999988887777665544 378999999988531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       104 g~iD~lVnnAg~  115 (283)
T 3v8b_A          104 GHLDIVVANAGI  115 (283)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999987654

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=82.08  E-value=5.9  Score=33.85  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=54.7

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           -+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG-AKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3578998888766   34566677786 89999999887777666555544 378899999987531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+..+
T Consensus        84 ~id~lv~nAg~   94 (247)
T 2jah_A           84 GLDILVNNAGI   94 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=82.04  E-value=6.1  Score=34.31  Aligned_cols=74  Identities=18%  Similarity=0.307  Sum_probs=52.9

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------CCCccE
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQL  233 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------~~~fD~  233 (343)
                      .+++++|--|.+.|.   .+..|++.|+ +|+.+|.+..  +.+.+.....+ .++.++++|+.+...      .+..|+
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~~~g~iDi   82 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDG-GNASALLIDFADPLAAKDSFTDAGFDI   82 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT-CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence            567888888888773   5777888887 8999998753  23334444455 378899999987542      367999


Q ss_pred             EEECccc
Q 019324          234 VMDKGTL  240 (343)
Q Consensus       234 V~~~~~l  240 (343)
                      ++.|..+
T Consensus        83 LVNNAGi   89 (247)
T 4hp8_A           83 LVNNAGI   89 (247)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9988644

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=81.96  E-value=3.9  Score=35.84  Aligned_cols=76  Identities=14%  Similarity=0.120  Sum_probs=57.7

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           -
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVG-GKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45778999998766   35666777787 89999999888887777666655 378899999988631           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       108 g~iD~lvnnAg~  119 (276)
T 3r1i_A          108 GGIDIAVCNAGI  119 (276)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=81.69  E-value=3.1  Score=35.94  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=55.8

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      +++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+...           -+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4678888887665   35666777787 79999999998888777665544 378999999988531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+...
T Consensus        83 ~id~lv~nAg~   93 (257)
T 3imf_A           83 RIDILINNAAG   93 (257)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987653

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=81.56  E-value=5.8  Score=34.58  Aligned_cols=76  Identities=20%  Similarity=0.243  Sum_probs=56.5

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeC-------------ChHHHHHHHHHHHHcCCCceEEEEccCCCCc
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-------------SEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~-------------s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~  226 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.             ++..++.+.+.....+ .++.++.+|+.+..
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG-RKALTRVLDVRDDA   90 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTTCHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHH
Confidence            45778999998776   35667777887 8999998             6777777766666555 37899999998753


Q ss_pred             c-----------CCCccEEEECccc
Q 019324          227 L-----------ERQFQLVMDKGTL  240 (343)
Q Consensus       227 ~-----------~~~fD~V~~~~~l  240 (343)
                      .           -+..|+++.+...
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            1           1478999987654

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=81.51  E-value=5.9  Score=34.17  Aligned_cols=74  Identities=16%  Similarity=0.111  Sum_probs=45.7

Q ss_pred             CCCeEEEEccC--cc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          164 SSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       164 ~~~~VLDiGcG--~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++||-.|++  .|   .++..|++.|+ +|+.++.++...+.+++.....+  +..++.+|+.+...           
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHHHH
Confidence            35689988875  33   24555666786 79999988732222222222222  34788899987531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        85 ~g~iD~lv~~Ag~   97 (265)
T 1qsg_A           85 WPKFDGFVHSIGF   97 (265)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1378999987654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=81.34  E-value=5.9  Score=34.61  Aligned_cols=76  Identities=16%  Similarity=0.221  Sum_probs=55.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCC----------------hHHHHHHHHHHHHcCCCceEEEEccCC
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS----------------EDAINLAQSLANRDGFSCIKFLVDDVL  223 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s----------------~~~i~~a~~~~~~~~~~~i~~~~~D~~  223 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.+                +..++...+.....+ .++.++.+|+.
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~   86 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-RRIVTAEVDVR   86 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTT
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-CceEEEEcCCC
Confidence            45778999998877   35667777887 89999987                566666655555544 37999999998


Q ss_pred             CCcc-----------CCCccEEEECccc
Q 019324          224 DTKL-----------ERQFQLVMDKGTL  240 (343)
Q Consensus       224 ~~~~-----------~~~fD~V~~~~~l  240 (343)
                      +...           -+..|+++.+..+
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            8531           1478999988654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=81.25  E-value=6.2  Score=34.41  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|++++.++..++.+.+.+...+ .++.++.+|+.+...           -+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG-VEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4678998888765   34556667786 89999999887776666555444 378899999987531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      .+|+++.+..+
T Consensus        99 ~iD~lv~~Ag~  109 (277)
T 2rhc_B           99 PVDVLVNNAGR  109 (277)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=81.11  E-value=5.4  Score=34.27  Aligned_cols=77  Identities=12%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc--CCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~--~~~~i~~~~~D~~~~~~----------  227 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...  +..++.++.+|+.+...          
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            34678998898776   35666777787 8999999998887777665543  22478899999988531          


Q ss_pred             -CCCccEEEECccc
Q 019324          228 -ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -~~~fD~V~~~~~l  240 (343)
                       -+..|+++.+..+
T Consensus        84 ~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           84 KYGAVDILVNAAAM   97 (250)
T ss_dssp             HHCCEEEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             1478999987654

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=80.83  E-value=6.1  Score=34.08  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=54.4

Q ss_pred             CCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       164 ~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           -+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG-VEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4678998888766   34556677786 89999999887776666555444 378899999987531           14


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+...
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=80.68  E-value=2.9  Score=37.09  Aligned_cols=77  Identities=18%  Similarity=0.141  Sum_probs=56.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..+++||-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+..++.++.+|+.+...           -
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  117 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF  117 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            45678888887666   35666777787 899999998887777766655543478999999988531           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus       118 g~iD~lvnnAg~  129 (293)
T 3rih_A          118 GALDVVCANAGI  129 (293)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=80.30  E-value=20  Score=31.11  Aligned_cols=74  Identities=12%  Similarity=0.077  Sum_probs=49.1

Q ss_pred             CCCCeEEEEccC----cc-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTG----NG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG----~G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      ..+++||-.|++    .| .++..|++.|+ +|+.++.+. ..+.+++.....  .++.++.+|+.+...          
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~-~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   99 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ-FKDRVEKLCAEF--NPAAVLPCDVISDQEIKDLFVELGK   99 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT-CHHHHHHHHGGG--CCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch-HHHHHHHHHHhc--CCceEEEeecCCHHHHHHHHHHHHH
Confidence            456789999943    33 35677777887 899999987 222222222222  268899999988531          


Q ss_pred             -CCCccEEEECccc
Q 019324          228 -ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -~~~fD~V~~~~~l  240 (343)
                       -+..|+++.+..+
T Consensus       100 ~~g~id~li~nAg~  113 (280)
T 3nrc_A          100 VWDGLDAIVHSIAF  113 (280)
T ss_dssp             HCSSCCEEEECCCC
T ss_pred             HcCCCCEEEECCcc
Confidence             2478999987654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=80.30  E-value=6.5  Score=34.29  Aligned_cols=77  Identities=17%  Similarity=0.152  Sum_probs=57.2

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--CceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~~i~~~~~D~~~~~~----------  227 (343)
                      ..+++||-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+.  .++.++.+|+.+...          
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45678999998766   35666777787 899999999888877776665543  168899999987531          


Q ss_pred             -CCCccEEEECccc
Q 019324          228 -ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -~~~fD~V~~~~~l  240 (343)
                       -+..|+++.+...
T Consensus        88 ~~g~id~lv~nAg~  101 (281)
T 3svt_A           88 WHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence             1478999987654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=80.19  E-value=27  Score=30.67  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=48.5

Q ss_pred             CCCCeEEEEccCccHHHH----HHHhcCCCcEEEEeCChHHHHHHHHHHHH-cCCCceEEE-EccCCCCcc----CCCcc
Q 019324          163 LSSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFL-VDDVLDTKL----ERQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~----~la~~g~~~v~gvD~s~~~i~~a~~~~~~-~~~~~i~~~-~~D~~~~~~----~~~fD  232 (343)
                      .++++||-.|+. |.++.    .|++.|+ +|++++.++...+...+.+.. .+ .++.++ .+|+.+...    -..+|
T Consensus         9 ~~~~~vlVTGat-G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A            9 PEGSLVLVTGAN-GFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYP-GRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHST-TTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCEEEEECCc-cHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCC-CceEEEEecCCcChHHHHHHHcCCC
Confidence            446789988764 44444    4455676 899999987766554443322 12 368888 799887542    23689


Q ss_pred             EEEECccc
Q 019324          233 LVMDKGTL  240 (343)
Q Consensus       233 ~V~~~~~l  240 (343)
                      +|+.....
T Consensus        86 ~vih~A~~   93 (342)
T 1y1p_A           86 GVAHIASV   93 (342)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeCCC
Confidence            99976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	343
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-09
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-07
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	1e-06
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	3e-06
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	7e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	9e-06
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	1e-05
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	2e-05
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	4e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	6e-05
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-04
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	2e-04
d1wxxa2	318	c.66.1.51 (A:65-382) Hypothetical protein TTHA1280	4e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	5e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	6e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	7e-04
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	7e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	0.001
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.002
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	0.003
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.004

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 55.7 bits (133), Expect = 1e-09
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 2/112 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT 225
           SVLD+G G G  L +  + G  +  GVD +E +IN A+  A        + F   D    
Sbjct: 27  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 86

Query: 226 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277
            ++   +      +  +            +   ++++ + PGG  ++T  + 
Sbjct: 87  HMDLGKE-FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 11/145 (7%)

Query: 140 SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 191
           S GH   H E LK +         + +N        VLD+G G G+L    +K G   + 
Sbjct: 3   SYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVL 62

Query: 192 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 251
           GVD SE        +        I  +   + +  L  +   V+     + +G       
Sbjct: 63  GVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIIS---EWMGYFLLFES 119

Query: 252 KRIMYWDSVSKLVAPGGLLVITSCN 276
                  + +K +A GG +    C 
Sbjct: 120 MLDSVLYAKNKYLAKGGSVYPDICT 144

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 10/124 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS---------CIKF 217
            VL    G    +  LS QG+  + G + SE A+    +                     
Sbjct: 23  RVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81

Query: 218 LVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 277
           +     D        +       D   +       R  Y   +  L+      ++ +   
Sbjct: 82  IEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141

Query: 278 TKDE 281
            +  
Sbjct: 142 DQAL 145

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 11/144 (7%)

Query: 140 SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 191
           S  H   H E L+           + +N        VLD+G G G+L    +K G   + 
Sbjct: 6   SYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVI 65

Query: 192 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 251
           GVD S       + +        I  L   + D  L      ++    +    L+     
Sbjct: 66  GVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMD 125

Query: 252 KRIMYWDSVSKLVAPGGLLVITSC 275
             +   D        GGL+    C
Sbjct: 126 TVLYARDHYLV---EGGLIFPDKC 146

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 23/162 (14%)

Query: 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD 220
            +    ++L++G+  G     L +    D+T V+ SE+AI+ AQ               D
Sbjct: 17  PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFED 75

Query: 221 DVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 280
             L  + +      + +   D     P   LKRI         +A GG L +   N    
Sbjct: 76  AQLPRRYDNIVLTHVLEHIDD-----PVALLKRIND-----DWLAEGGRLFLVCPN---- 121

Query: 281 ELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTY 322
                 +N   R+I V       +             H  TY
Sbjct: 122 ------ANAVSRQIAVKMGIISHNSAVT--EAEFAHGHRCTY 155

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.8 bits (102), Expect = 9e-06
 Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 7/139 (5%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           VLDIG G G      S     +  GVD +++ + +A S A   G   ++F          
Sbjct: 20  VLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78

Query: 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287
                   D  T      H     K +     V K     G  ++    + +D ++ E  
Sbjct: 79  PDDS---FDIITCRYAAHHFSDVRKAVREVARVLK---QDGRFLLVDHYAPEDPVLDEFV 132

Query: 288 NLSQRRIGVSQEHEIKDEE 306
           N   R    S   E    E
Sbjct: 133 NHLNRLRDPSHVRESSLSE 151

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG---------FSCIKF 217
            VLD+  G G+    L ++GF  +T VD S+  +  A                      +
Sbjct: 59  RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117

Query: 218 LVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 276
           L  D      +    ++    +   +        +  +   +++ +V PGGLLVI   N
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 38/154 (24%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------------- 213
           +++DIG+G  +     +   F D+T  D+++      +    ++  +             
Sbjct: 54  TLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 113

Query: 214 ----------------------CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 251
                                      + + L   +      V+    ++      D   
Sbjct: 114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR 173

Query: 252 KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285
                  +++ L+ PGG LV T        +V +
Sbjct: 174 A---ALCNLASLLKPGGHLVTTVTLRLPSYMVGK 204

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 7/139 (5%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           VLD+ TG G +    +      +   D +ED + +A++    +G   ++++  D      
Sbjct: 19  VLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 77

Query: 228 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 287
             +   ++          +P   +            +  GG L++   ++ +++      
Sbjct: 78  TDERFHIVTCRIAAHHFPNPASFVSEAYRV------LKKGGQLLLVDNSAPENDAFDVFY 131

Query: 288 NLSQRRIGVSQEHEIKDEE 306
           N  ++    S     K  +
Sbjct: 132 NYVEKERDYSHHRAWKKSD 150

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI 215
           +  N        VLD+G+G G+L    +K G   + G++ S  +    + +        +
Sbjct: 25  MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVV 84

Query: 216 KFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 275
             +   V + +L  +   ++     + +G              +  K +AP GL+     
Sbjct: 85  TIIKGKVEEVELPVEKVDIIIS---EWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA 141

Query: 276 NS 277
             
Sbjct: 142 TL 143

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTK 226
           +LD+G+G+G +L   ++      TG+D S      A+  A        + F+ +D     
Sbjct: 37  ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273
              +  +    G     G             + +++ + PGG+++I 
Sbjct: 97  ANEKCDVAACVGATWIAGGFAG-------AEELLAQSLKPGGIMLIG 136

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 13/148 (8%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLD 224
             VLD+ T  G      +  G  ++ G+D S  AI  A+  A  +G     KF+V    +
Sbjct: 147 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE 206

Query: 225 T-KLERQFQLVMDKGTLDAI--GLHP-DGPLKRIMYWD---SVSKLVAPGGLLVITSCNS 277
             +  ++     D   LD      H  D       Y++   +   LV  GG+LV  SC+ 
Sbjct: 207 EMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266

Query: 278 TKD-----ELVHEVSNLSQRRIGVSQEH 300
             D     +++      + + + + + +
Sbjct: 267 HVDLQMFKDMIIAAGAKAGKFLKMLEPY 294

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 38/212 (17%), Positives = 62/212 (29%), Gaps = 33/212 (15%)

Query: 77  NSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLC 136
            +D    + EG    L L          E    +E      V +  D+            
Sbjct: 83  KNDARTRELEG----LPLYVRPLLGEVPERVQVQEGR----VRYLVDLRAGQ-------- 126

Query: 137 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS 196
                G  L+              +       LD+ +  G     L+     ++  VD S
Sbjct: 127 ---KTGAYLDQ------RENRLYMERFRGERALDVFSYAGGFALHLALGFR-EVVAVDSS 176

Query: 197 EDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM-DKGTLD----AIGLHPDGPL 251
            +A+  A+  A  +G   ++ L  +  D     + +    D   LD    A G       
Sbjct: 177 AEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERA 236

Query: 252 KRIMYW--DSVSKLVAPGGLLVITSCNSTKDE 281
            R          KL+  GG+L   SC+    E
Sbjct: 237 YRAYKEVNLRAIKLLKEGGILATASCSHHMTE 268

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 11/184 (5%)

Query: 145 LNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSK--QGFSDLTGVDYSEDAINL 202
           L + +D  S  V    K      ++D G G G L   L       S  TG+D  E  +  
Sbjct: 8   LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA- 66

Query: 203 AQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSK 262
                 R      +FL  D  + +L  ++ + +    L    LH   P         +  
Sbjct: 67  EARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL----LHMTTPET---MLQKMIH 119

Query: 263 LVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTY 322
            V  GG ++    +   +   + +    Q         +   E   +    +  N     
Sbjct: 120 SVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQR-NGKDGNIGMKI 178

Query: 323 PTFM 326
           P ++
Sbjct: 179 PIYL 182

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 168 VLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR-------DGFSCIKFLV 219
            +D+G+G G  + + + + G +   G +  +DA +L               G        
Sbjct: 220 FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279

Query: 220 DDVLDTKLERQFQLVMDKGTLDAI-GLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 273
                     +   ++ +  +  +     D  L + +    + +    G  ++  
Sbjct: 280 SLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEK--ILQTAKVGCKIISL 332

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 223
             VL+ G G+G L   L +       +   +   D    A     R   S       D  
Sbjct: 98  ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHA-----RRNVSGCYGQPPDNW 152

Query: 224 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 283
              +       +  G++D   L    P +     D+VS+L+  GG+L++     T+   +
Sbjct: 153 RLVVSDLADSELPDGSVDRAVLDMLAPWE---VLDAVSRLLVAGGVLMVYVATVTQLSRI 209

Query: 284 HE 285
            E
Sbjct: 210 VE 211

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 222
           +   SV+D GTGNG+L       G   +T  D   DAI  A+       F          
Sbjct: 47  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV----- 101

Query: 223 LDTKLERQFQLVMDKGTLDAIGLHPDGPLKR 253
             +++  ++   +      ++  H D     
Sbjct: 102 --SEISGKYDTWIMNPPFGSVVKHSDRAFID 130

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 13/120 (10%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 226
            +D+G G G +  EL+ +    +  +D + +AI+  +    R G    +  +  D  +  
Sbjct: 37  AVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95

Query: 227 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 285
            +     + +  G+   +                +   + PGG +++T+          E
Sbjct: 96  CKIPDIDIAVVGGSGGEL----------QEILRIIKDKLKPGGRIIVTAILLETKFEAME 145

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 6/160 (3%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
             LD+  G G L + L  +   +   VD S++ ++ A++     G        D    + 
Sbjct: 40  DYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD---ISN 95

Query: 227 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHE 285
           L    +  +    LD+     D       Y+ +VS  +  GG+ +    +  K  +++  
Sbjct: 96  LNINRKFDLITCCLDSTNYIID-SDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGN 154

Query: 286 VSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTF 325
                             +++        ++     Y  F
Sbjct: 155 NDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 21/132 (15%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-------------- 212
            V     G  + ++  + +G   + GV+ SE  I    +  N                  
Sbjct: 48  RVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK 106

Query: 213 ---SCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGL 269
                I      + D     +  +       D   L    P  R  Y D++  L+     
Sbjct: 107 SSSGNISLYCCSIFDL---PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQ 163

Query: 270 LVITSCNSTKDE 281
            ++   +    +
Sbjct: 164 YLLCVLSYDPTK 175

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 211
           ++DIG+G  +     +   F D+T  D+ E            + 
Sbjct: 58  LIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.84
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.83
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.82
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.82
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.8
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.79
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.79
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.79
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.78
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.78
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.76
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.76
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.76
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.76
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.73
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.72
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.71
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.71
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.69
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.69
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.68
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.68
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.68
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.65
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.64
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.63
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.62
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.62
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.61
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.58
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.55
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.55
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.54
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.52
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.52
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.51
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.51
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.49
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.49
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.49
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.48
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.48
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.48
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.47
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.47
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.46
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.45
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.45
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.44
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.41
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.39
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.39
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.38
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.38
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.36
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.35
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.35
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.31
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.31
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.31
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.3
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.29
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.23
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.22
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.19
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.12
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.11
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.09
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.09
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.95
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.94
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.91
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.87
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.87
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.85
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.84
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.82
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.79
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.76
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.76
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.74
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.73
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.69
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.64
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.63
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.6
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.58
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.57
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.57
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.56
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.53
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.47
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.46
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.35
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.32
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.14
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.09
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.03
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.35
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.12
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.05
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.99
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.96
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.93
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.82
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.8
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.74
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.67
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.6
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.56
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.31
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.07
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.04
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.03
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.78
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.66
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.59
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.31
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.06
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.01
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.0
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.0
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.95
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.82
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.78
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.69
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.65
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.64
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.61
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.94
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.91
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.8
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.73
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.56
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.35
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.24
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.24
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.05
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.61
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.22
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.2
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.05
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.98
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	91.92
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.73
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.67
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.61
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.52
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.4
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.82
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.7
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.63
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.48
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.43
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.34
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.19
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.71
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	89.62
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	89.52
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.16
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.91
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.45
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	88.38
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.19
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.64
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	87.58
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	87.46
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	87.36
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	87.08
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.04
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.73
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.91
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	85.35
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.12
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	84.81
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	84.68
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	84.4
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	83.79
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.5
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.21
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	82.65
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	82.6
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	82.55
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.36
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	81.9
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.37
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	81.14
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	81.09
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	80.59
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	80.06

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.84  E-value=7.9e-21  Score=165.82  Aligned_cols=113  Identities=15%  Similarity=0.326  Sum_probs=99.5

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .+.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+.++++|.++|+.++++ +++||+|++..+
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~   90 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA   90 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccc
Confidence            447789999999999999999999975 899999999999999999999888899999999999875 689999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      ++|+       .+...+++++.++|||||++++..+......
T Consensus        91 l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~  125 (231)
T d1vl5a_          91 AHHF-------PNPASFVSEAYRVLKKGGQLLLVDNSAPEND  125 (231)
T ss_dssp             GGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSH
T ss_pred             cccc-------CCHHHHHHHHHHhcCCCcEEEEEeCCCCCCH
Confidence            9998       4667889999999999999999765544333

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=1.5e-20  Score=164.90  Aligned_cols=113  Identities=18%  Similarity=0.287  Sum_probs=99.9

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~  239 (343)
                      .++++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+.+++.++++|+.+.++ +++||+|+|..+
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~   91 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA   91 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeece
Confidence            447899999999999999999999874 899999999999999999998888899999999999875 689999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      ++++       .+...+++++.++|||||++++.........
T Consensus        92 l~~~-------~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~  126 (234)
T d1xxla_          92 AHHF-------SDVRKAVREVARVLKQDGRFLLVDHYAPEDP  126 (234)
T ss_dssp             GGGC-------SCHHHHHHHHHHHEEEEEEEEEEEECBCSSH
T ss_pred             eecc-------cCHHHHHHHHHHeeCCCcEEEEEEcCCCCCH
Confidence            9988       4567889999999999999999755444333

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=6.5e-20  Score=161.91  Aligned_cols=108  Identities=24%  Similarity=0.411  Sum_probs=94.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEEC-cccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK-GTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~-~~l~  241 (343)
                      .++.+|||||||+|.++..|++.|+ +|+|+|+|+.|++.|++++...+. +++++++|+.+++++++||+|+|. .++.
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~~~fD~I~~~~~~~~  117 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc-cchheehhhhhcccccccchHhhhhhhhh
Confidence            5567999999999999999999987 899999999999999999988775 899999999999888899999996 4555


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++     ...+...+|++++++|||||++++..++.
T Consensus       118 ~~-----~~~~~~~~L~~~~~~LkpgG~lii~~~~~  148 (251)
T d1wzna1         118 YF-----DEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (251)
T ss_dssp             GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             cC-----ChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence            54     23567789999999999999999976654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=4.8e-21  Score=169.63  Aligned_cols=164  Identities=20%  Similarity=0.190  Sum_probs=121.0

Q ss_pred             HHhHHHHHHHHHHhhhhcCCcceEEeCCchhHHHHHHHhhhhhccccCcccCcccc-ccccchhhhhcc-CCCCeEEEEc
Q 019324           95 QSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDIG  172 (343)
Q Consensus        95 ~~~Wd~~y~~~~~~f~~~~~~~~~wf~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~VLDiG  172 (343)
                      .+.|...|+++...+.    .+..|.-.+....   -.....+.+.+++.++++.| ++++|++.+... .++.+|||+|
T Consensus        56 ~~dW~~~w~~~~~p~~----~~~~~v~~~~~~~---~~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiG  128 (254)
T d2nxca1          56 DEDWLEAWRRDLKPAL----APPFVVLAPWHTW---EGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLG  128 (254)
T ss_dssp             HHHHHHHHHHHCCCEE----ETTEEEECTTCCC---CSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEET
T ss_pred             cchHHHHHHhhCCCEE----ECCEEEEeccccC---CCcceEEEEccccccCccccchhhHHHHHHHhhcCccCEEEEcc
Confidence            4568888877655443    2222211111000   01234467889999999999 889999888765 7889999999


Q ss_pred             cCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccccCCCChhh
Q 019324          173 TGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLK  252 (343)
Q Consensus       173 cG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~  252 (343)
                      ||+|.+++.+++.|. +|+|+|+|+.|++.|++|++.+++ +++++++|+.+....++||+|+++...+.          
T Consensus       129 cGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~~~~~~fD~V~ani~~~~----------  196 (254)
T d2nxca1         129 TGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAALPFGPFDLLVANLYAEL----------  196 (254)
T ss_dssp             CTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHHGGGCCEEEEEEECCHHH----------
T ss_pred             cchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccccccccccchhhhcccccc----------
Confidence            999999999999886 899999999999999999999997 67899999876545689999999755433          


Q ss_pred             HHHHHHHHhhccCCCcEEEEEecCC
Q 019324          253 RIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       253 ~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ...+++.+.++|||||+++++....
T Consensus       197 l~~l~~~~~~~LkpGG~lilSgil~  221 (254)
T d2nxca1         197 HAALAPRYREALVPGGRALLTGILK  221 (254)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred             HHHHHHHHHHhcCCCcEEEEEecch
Confidence            3467799999999999999975533

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.1e-20  Score=160.07  Aligned_cols=109  Identities=21%  Similarity=0.224  Sum_probs=92.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-----------------CCceEEEEccCCCC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----------------FSCIKFLVDDVLDT  225 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-----------------~~~i~~~~~D~~~~  225 (343)
                      .++.+|||+|||+|..+..|++.|+ +|+|+|+|+.||+.|+++....+                 ..+++++++|+...
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            5678999999999999999999998 89999999999999998764321                 13789999999887


Q ss_pred             cc--CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          226 KL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       226 ~~--~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..  .+.||+|++..+++++.     +.....+++++.++|||||++++.+.+.
T Consensus       123 ~~~~~~~fd~i~~~~~l~~~~-----~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         123 PRTNIGKFDMIWDRGALVAIN-----PGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             GGSCCCCEEEEEESSSTTTSC-----GGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             cccccCceeEEEEEEEEEecc-----chhhHHHHHHHHhhcCCcceEEEEEccc
Confidence            53  57899999999998873     4567788999999999999988876544

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=2.9e-19  Score=154.82  Aligned_cols=107  Identities=25%  Similarity=0.405  Sum_probs=94.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+. ++.++++|+.+.+. +++||+|++..+++
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  113 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFEDKTFDYVIFIDSIV  113 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc-cccccccccccccccCcCceEEEEecchh
Confidence            4578999999999999999999876 899999999999999999887774 78899999999875 68999999999998


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++.     ..+..++++++.++|||||++++...+
T Consensus       114 ~~~-----~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         114 HFE-----PLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             GCC-----HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hCC-----hhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            872     356778999999999999999987654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=3.1e-19  Score=152.42  Aligned_cols=110  Identities=16%  Similarity=0.286  Sum_probs=98.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||||||+|..+..++++|+ +|+|+|+|+.|++.++++....+++++.+...|+....++++||+|++..++++
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~  107 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF  107 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence            3456999999999999999999987 899999999999999999999998889999999999888899999999999988


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      +.     +.....+++++.++|+|||++++......
T Consensus       108 ~~-----~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  138 (198)
T d2i6ga1         108 LE-----AQTIPGLIANMQRCTKPGGYNLIVAAMDT  138 (198)
T ss_dssp             SC-----TTHHHHHHHHHHHTEEEEEEEEEEEEBC-
T ss_pred             CC-----HHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            72     24566889999999999999999766543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.5e-19  Score=154.77  Aligned_cols=110  Identities=16%  Similarity=0.250  Sum_probs=95.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|++++...+.++++|+++|+.++++ +++||+|++..+++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            55789999999999999998877666899999999999999999888776789999999999875 68999999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      |+.     ..+...+++++.++|||||.+++.....
T Consensus       139 h~~-----~~~~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         139 HLT-----DQHLAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cch-----hhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence            883     2445679999999999999999975433

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2e-19  Score=158.65  Aligned_cols=108  Identities=20%  Similarity=0.251  Sum_probs=95.8

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      .+.++.+|||||||+|.++..+++. | .+|+|+|+|+.|++.|+++....|+. +++|.++|+.+...+++||+|++..
T Consensus        30 ~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~  108 (245)
T d1nkva_          30 RMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVG  108 (245)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEES
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEe
Confidence            3478899999999999999999886 5 48999999999999999999999874 6999999999986788999999999


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +++++       .+...+++++.++|||||++++..+.
T Consensus       109 ~~~~~-------~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         109 ATWIA-------GGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             CGGGT-------SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             hhhcc-------CCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            99988       34567889999999999999997553

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.78  E-value=3.9e-19  Score=156.77  Aligned_cols=107  Identities=21%  Similarity=0.294  Sum_probs=94.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEEC-cccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK-GTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~-~~l~  241 (343)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++....+. +++++++|+.++.++++||+|+|. .++.
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc-cceeeccchhhhcccccccccceeeeeee
Confidence            4467999999999999999999986 899999999999999999988875 899999999998888899999985 4666


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++    ....++..++++++++|||||.+++...
T Consensus       114 ~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         114 YI----IDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             GC----CSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cc----CCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            55    3456788899999999999999998654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.76  E-value=2e-18  Score=152.83  Aligned_cols=112  Identities=22%  Similarity=0.277  Sum_probs=96.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc--cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~--~~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|..+..+++.+..+|+|+|+|+.|++.|+++....+. .++.|.++|+....  ..++||+|+|..+
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            56789999999999999999998877899999999999999999887665 37999999997654  3678999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ++++.   ....+...+++++.++|||||+++++.++.
T Consensus       103 l~~~~---~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_         103 FHYAF---STSESLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             eeecC---CCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence            98873   334566789999999999999999988764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.76  E-value=4.8e-19  Score=159.50  Aligned_cols=106  Identities=14%  Similarity=0.287  Sum_probs=94.9

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-CCCccEEEECc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      +.++.+|||||||+|.++..|+++ |+ +|+|+|+|+.+++.|+++....|+. +++|.++|+.++++ +++||+|++..
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence            367899999999999999999987 54 8999999999999999999988874 79999999999875 58999999999


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +++|+       .+...+++++.++|||||++++..+
T Consensus       144 ~l~h~-------~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         144 AFLHS-------PDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             CGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhhc-------cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            99988       3556789999999999999999654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.76  E-value=1.1e-18  Score=152.05  Aligned_cols=105  Identities=23%  Similarity=0.334  Sum_probs=92.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++..    .++.++++|+.+..++++||+|++..+++|
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~~~fD~I~~~~vleh   93 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVLTHVLEH   93 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----cccccccccccccccccccccccccceeEe
Confidence            4577999999999999999999875 89999999999999998753    379999999998888899999999999999


Q ss_pred             cccCCCChhhHHHHHHHHh-hccCCCcEEEEEecCCCh
Q 019324          243 IGLHPDGPLKRIMYWDSVS-KLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~-~~LkpgG~lii~~~~~~~  279 (343)
                      +       .+...++.++. ++|||||.+++..++...
T Consensus        94 ~-------~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~  124 (225)
T d2p7ia1          94 I-------DDPVALLKRINDDWLAEGGRLFLVCPNANA  124 (225)
T ss_dssp             C-------SSHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred             c-------CCHHHHHHHHHHHhcCCCceEEEEeCCccc
Confidence            8       45667889997 899999999999887653

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=2.5e-18  Score=150.71  Aligned_cols=101  Identities=23%  Similarity=0.352  Sum_probs=85.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEEC-ccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK-GTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~-~~l  240 (343)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++..      ..++++|+.++++ +++||+|++. .++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~------~~~~~~~~~~l~~~~~~fD~ii~~~~~~  113 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV------KNVVEAKAEDLPFPSGAFEAVLALGDVL  113 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC------SCEEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred             CCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc------cccccccccccccccccccceeeecchh
Confidence            4578999999999999999999986 89999999999999998632      2367889998876 5899999986 578


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +|+       .+...+++++.++|||||++++..++.
T Consensus       114 ~~~-------~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         114 SYV-------ENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             HHC-------SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             hhh-------hhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            887       355678899999999999999987654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.73  E-value=6.7e-18  Score=151.89  Aligned_cols=106  Identities=20%  Similarity=0.225  Sum_probs=94.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++. + ..+|+|+|+|+.+++.|+++....+. +++|.++|+.+.+++++||+|++..++
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~~~fD~v~~~~~l  104 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHAFL  104 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccccCCceEEEEehhh
Confidence            56789999999999999999885 2 23799999999999999999988775 899999999998777899999999999


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +|+       .+...+++++.++|||||.+++..+.
T Consensus       105 ~~~-------~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1         105 LHM-------TTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             GGC-------SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcC-------CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            998       35567899999999999999998765

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.72  E-value=6.9e-18  Score=142.76  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=92.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC------------CceEEEEccCCCCcc--C
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF------------SCIKFLVDDVLDTKL--E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~------------~~i~~~~~D~~~~~~--~  228 (343)
                      .++.+|||+|||+|..+..|+++|+ +|+|+|+|+.|++.|++++...+.            .++.++++|+.+...  .
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~   97 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   97 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence            6788999999999999999999997 899999999999999998754321            256899999988764  4


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..||+|++..++.++.     ......+++++.++|||||.+++.....
T Consensus        98 ~~~D~i~~~~~l~~l~-----~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          98 GHCAAFYDRAAMIALP-----ADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             HSEEEEEEESCGGGSC-----HHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             cceeEEEEEeeeEecc-----hhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            6899999999998873     3456788999999999999988865443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.71  E-value=3.8e-17  Score=138.90  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=93.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++++.+++.  ++++..+|+.+...+++||+|+++.++
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~  129 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI  129 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCS
T ss_pred             CCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcccE
Confidence            678899999999999999999875 48999999999999999999988874  589999999886557899999999887


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++.      ......+++++.++|||||++++......
T Consensus       130 ~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  161 (194)
T d1dusa_         130 RAG------KEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             TTC------HHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             Eec------chhhhhHHHHHHHhcCcCcEEEEEEeCcC
Confidence            544      24456789999999999999988665554

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.71  E-value=2.5e-17  Score=143.13  Aligned_cols=111  Identities=17%  Similarity=0.251  Sum_probs=92.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc---CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKG  238 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~  238 (343)
                      .++.+|||||||+|..+..|++.   +..+|+|+|+|+.|++.|++++...+. .++.+..+|+.+.+. ..+|+|++..
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~i~~~~  116 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF  116 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-CSEEEEEEES
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-ccceeeEEee
Confidence            67889999999999999999874   233899999999999999999877664 368888888887644 5789999998


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      +++++.     ..+...++++++++|||||.+++.......
T Consensus       117 ~l~~~~-----~~d~~~~l~~i~~~LkpgG~li~~~~~~~~  152 (225)
T d1im8a_         117 TLQFLP-----PEDRIALLTKIYEGLNPNGVLVLSEKFRFE  152 (225)
T ss_dssp             CGGGSC-----GGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred             eccccC-----hhhHHHHHHHHHHhCCCCceeecccccccc
Confidence            887763     356678999999999999999997665443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=5.7e-17  Score=146.43  Aligned_cols=114  Identities=23%  Similarity=0.271  Sum_probs=89.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC----ceEEEEccCCCC----ccCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS----CIKFLVDDVLDT----KLERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~----~i~~~~~D~~~~----~~~~~fD~V  234 (343)
                      .++.+|||+|||+|.++..|++.|+ +|+|+|+|+.||+.|+++....+..    ...+...|+...    +..+.||+|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v  133 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  133 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence            4467999999999999999999986 8999999999999999988766542    344555555432    245789999


Q ss_pred             EECc-cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          235 MDKG-TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       235 ~~~~-~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +|.+ ++.|+.-......+...+|+++.++|||||+|++...+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  177 (292)
T d1xvaa_         134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  177 (292)
T ss_dssp             EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence            9854 788874323334677889999999999999999987653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=2.9e-17  Score=140.77  Aligned_cols=98  Identities=18%  Similarity=0.241  Sum_probs=85.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..+.     +++|+|+|+.+++.++++       ++.++++|+.+.+. +++||+|++..+++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------ccccccccccccccccccccccccccccc
Confidence            456789999999999988773     578999999999999873       68999999998875 58999999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCCh
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  279 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~  279 (343)
                      |+       .+...+++++.++|+|||.+++..++...
T Consensus       103 h~-------~d~~~~l~~~~~~L~pgG~l~i~~~~~~~  133 (208)
T d1vlma_         103 FV-------DDPERALKEAYRILKKGGYLIVGIVDRES  133 (208)
T ss_dssp             GS-------SCHHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred             cc-------cccccchhhhhhcCCCCceEEEEecCCcc
Confidence            98       35667899999999999999998887754

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.7e-17  Score=142.34  Aligned_cols=112  Identities=18%  Similarity=0.171  Sum_probs=85.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCc----------------------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC----------------------------  214 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~----------------------------  214 (343)
                      .++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|++++...+...                            
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            4577999999999999888887766689999999999999999886544210                            


Q ss_pred             -e-EEEEccCCCC-----ccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          215 -I-KFLVDDVLDT-----KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       215 -i-~~~~~D~~~~-----~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                       + .....+....     ...++||+|++..+++++.   ....+...+++++.++|||||.+++..+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~---~~~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC---CSLDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhc---ccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence             0 1222222221     1257899999999999983   334567788999999999999999976644

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.68  E-value=9.9e-17  Score=142.03  Aligned_cols=106  Identities=13%  Similarity=0.210  Sum_probs=91.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l~  241 (343)
                      .++.+|||+|||+|.++..|+..++..|+++|+|+.|++.|+++....  ++++|+++|+.++.+ +++||+|++..+++
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~  169 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccCCCccceEEeecccc
Confidence            467799999999999999988775668999999999999999887543  468999999999876 57899999999999


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |+.     ..+...+++++.++|||||++++...
T Consensus       170 hl~-----d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         170 YLT-----DADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccc-----hhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            983     34567889999999999999999654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.68  E-value=5e-17  Score=137.21  Aligned_cols=115  Identities=15%  Similarity=0.214  Sum_probs=94.6

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-C
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-E  228 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~  228 (343)
                      ++..++..+ ...++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|++|++.+++ ++++++++|+.+... .
T Consensus        21 ir~~il~~l-~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~   98 (186)
T d1l3ia_          21 VRCLIMCLA-EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI   98 (186)
T ss_dssp             HHHHHHHHH-CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred             HHHHHHHhc-CCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc
Confidence            444444443 44789999999999999999999875 4899999999999999999999998 589999999887644 4


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..||+|++.+...++          ..+++.+.++|||||++++.....
T Consensus        99 ~~~D~v~~~~~~~~~----------~~~~~~~~~~LkpgG~lvi~~~~~  137 (186)
T d1l3ia_          99 PDIDIAVVGGSGGEL----------QEILRIIKDKLKPGGRIIVTAILL  137 (186)
T ss_dssp             CCEEEEEESCCTTCH----------HHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             CCcCEEEEeCccccc----------hHHHHHHHHHhCcCCEEEEEeecc
Confidence            789999998765433          357899999999999998876543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=4.7e-16  Score=139.37  Aligned_cols=106  Identities=12%  Similarity=0.228  Sum_probs=91.7

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      +.++.+|||||||.|.++..+++. |. +|+|+|+|+.+++.|++++...++. ++.+...|..+.  +++||.|++..+
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~~~fD~i~si~~  126 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEA  126 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--CCCCSEEEEESC
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--ccchhhhhHhhH
Confidence            378999999999999999999887 65 8999999999999999999998874 577887787653  578999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++|+.     ......+++++.++|||||++++.+.
T Consensus       127 ~eh~~-----~~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         127 FEHFG-----HENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             GGGTC-----GGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             HHHhh-----hhhHHHHHHHHHhccCCCceEEEEEe
Confidence            99984     24556889999999999999999653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=3.8e-16  Score=139.27  Aligned_cols=97  Identities=20%  Similarity=0.273  Sum_probs=84.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++.+|||||||+|.++..+++.+. ..++|+|+|+.|++.|+++.     +++.|.++|+.++++ +++||+|++..++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~  157 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP  157 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhccCCCCCEEEEeecCCH
Confidence            4678999999999999999998843 38999999999999998764     489999999999886 6899999987765


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      .++              +++.|+|||||++++++++..
T Consensus       158 ~~~--------------~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         158 CKA--------------EELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             CCH--------------HHHHHHEEEEEEEEEEEECTT
T ss_pred             HHH--------------HHHHHHhCCCcEEEEEeeCCc
Confidence            543              789999999999999988764

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=5.8e-16  Score=137.73  Aligned_cols=146  Identities=18%  Similarity=0.247  Sum_probs=110.6

Q ss_pred             CcccCccccccccchhhhhcc-CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEE
Q 019324          142 GHMLNHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV  219 (343)
Q Consensus       142 ~~~~~~~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~  219 (343)
                      ..+..+++.++.++...+... ..+.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|+..+++++++|++
T Consensus        85 ~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~  164 (274)
T d2b3ta1          85 PATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ  164 (274)
T ss_dssp             TTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred             ccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeee
Confidence            334445566666665555544 55678999999999999999876 4459999999999999999999999988899999


Q ss_pred             ccCCCCccCCCccEEEECcccccc----------ccCC--------CChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          220 DDVLDTKLERQFQLVMDKGTLDAI----------GLHP--------DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       220 ~D~~~~~~~~~fD~V~~~~~l~~i----------~~~~--------~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                      +|+.+.....+||+|++|.++-..          ...|        ++......+++.+.++|+|||.+++.....+...
T Consensus       165 ~d~~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~  244 (274)
T d2b3ta1         165 SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEA  244 (274)
T ss_dssp             CSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHH
T ss_pred             cccccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHH
Confidence            999876556799999999764211          1111        1123445788999999999999999876666666


Q ss_pred             HHHHHH
Q 019324          282 LVHEVS  287 (343)
Q Consensus       282 ~~~~~~  287 (343)
                      +.+.+.
T Consensus       245 v~~~l~  250 (274)
T d2b3ta1         245 VRQAFI  250 (274)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666555

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.8e-15  Score=135.96  Aligned_cols=114  Identities=11%  Similarity=0.223  Sum_probs=94.5

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      +.++.+|||||||.|.++..+++. |+ +|+|+++|+..++.+++++...++. ++.+...|...  .+++||.|++.+.
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--~~~~fD~i~sie~  135 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--FDEPVDRIVSLGA  135 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--CCCCCSEEEEESC
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc--cccccceEeechh
Confidence            378999999999999999999876 75 9999999999999999999998874 68888888653  4679999999999


Q ss_pred             ccccccCC--CChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          240 LDAIGLHP--DGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       240 l~~i~~~~--~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++|+.-..  ........+++++.++|||||++++.+....
T Consensus       136 ~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~  176 (291)
T d1kpia_         136 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  176 (291)
T ss_dssp             GGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred             HHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence            99984110  1124567899999999999999999766543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.3e-15  Score=136.48  Aligned_cols=107  Identities=14%  Similarity=0.313  Sum_probs=92.9

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      +.++.+|||||||.|.++..+++. |+ +|+|+++|+..++.|+++....++ .++++...|....  +++||.|++.+.
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~fD~i~si~~  136 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DEPVDRIVSIGA  136 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--CCCCSEEEEESC
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--cccccceeeehh
Confidence            478999999999999999998877 75 999999999999999999888776 5799999998765  478999999999


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++|+.     ......+++++.++|||||++++.+..
T Consensus       137 ~eh~~-----~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         137 FEHFG-----HERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             GGGTC-----TTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hhhcC-----chhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            99984     133457899999999999999996554

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.9e-16  Score=139.68  Aligned_cols=110  Identities=19%  Similarity=0.221  Sum_probs=83.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-----------------------------
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-----------------------------  213 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-----------------------------  213 (343)
                      .++.+|||+|||+|.++...+..+..+|+|+|+|+.|++.+++++......                             
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            568899999999998876656554558999999999999999876543210                             


Q ss_pred             -ceEEEEccCCCCc-------cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          214 -CIKFLVDDVLDTK-------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       214 -~i~~~~~D~~~~~-------~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                       ......+|+....       .+++||+|++..+++++.   ....+...+++++.++|||||+|++...
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~---~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS---PDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHc---cCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence             1234556765532       145799999999999983   2345677889999999999999999654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=9.7e-16  Score=131.94  Aligned_cols=100  Identities=19%  Similarity=0.287  Sum_probs=86.7

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      +.++.+|||||||+|.++..+++. + ...|+++|+++.+++.|+++++..++.++.++++|..+..+ .++||+|++.+
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~  152 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhc
Confidence            478999999999999999999876 3 23799999999999999999999998899999999887544 57899999999


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .++++.             +.+.+.|||||++++..
T Consensus       153 ~~~~~p-------------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         153 GVDEVP-------------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             BBSCCC-------------HHHHHHEEEEEEEEEEB
T ss_pred             cHHHhH-------------HHHHHhcCCCcEEEEEE
Confidence            887763             45678899999998853

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.4e-15  Score=132.32  Aligned_cols=109  Identities=16%  Similarity=0.183  Sum_probs=82.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc------CC-CcEEEEeCChHHHHHHHHHHHHcC-CCceEE--EEccCCC-------C
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ------GF-SDLTGVDYSEDAINLAQSLANRDG-FSCIKF--LVDDVLD-------T  225 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~------g~-~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~--~~~D~~~-------~  225 (343)
                      .+..+|||||||+|.++..++..      +. ..++|+|+|+.|++.+++++.... +.++.+  ...++..       .
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            44558999999999998877653      11 268999999999999999876543 234444  3333321       1


Q ss_pred             ccCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          226 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       226 ~~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ..+++||+|++..+++++       .+...+++++.++|+|||.+++...+..
T Consensus       119 ~~~~~fD~I~~~~~l~~~-------~d~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             SSCCCEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             CCCCceeEEEEccceecC-------CCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            236899999999999998       4566889999999999999999876654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=7.6e-15  Score=129.57  Aligned_cols=108  Identities=17%  Similarity=0.306  Sum_probs=90.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++++....++ .+++++.+|+.+. .+.+||+|++..++
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~~~~D~v~~~~vl  156 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LPRKADAIILSFVL  156 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSSCEEEEEEESCG
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-cccchhheeecccc
Confidence            556799999999999999999873 348999998 6789999999988876 4799999999764 34679999999998


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +++.     ..+...+|++++++|||||++++.....
T Consensus       157 h~~~-----d~~~~~~L~~~~~~LkPGG~l~i~e~~~  188 (253)
T d1tw3a2         157 LNWP-----DHDAVRILTRCAEALEPGGRILIHERDD  188 (253)
T ss_dssp             GGSC-----HHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred             ccCC-----chhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence            8762     3556688999999999999999976543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-15  Score=130.63  Aligned_cols=108  Identities=13%  Similarity=0.103  Sum_probs=83.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~  239 (343)
                      .++.+|||||||+|..+..+++.+..+|+|+|+|+.+++.|+++....+. ++.++..|+....   .+++||.|+...+
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccccccccccceeeccc
Confidence            45789999999999999999988545899999999999999999887663 7888888765432   3578999986433


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .....+  ....+...+++++.|+|||||+|++.
T Consensus       131 ~~~~~~--~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         131 PLSEET--WHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCBGGG--TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccc--ccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            222111  11246677899999999999999874

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=126.36  Aligned_cols=114  Identities=16%  Similarity=0.276  Sum_probs=90.9

Q ss_pred             ccccchhhhh-ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-----CceEEEEccC
Q 019324          151 LKSEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-----SCIKFLVDDV  222 (343)
Q Consensus       151 ~~~~~~~~l~-~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-----~~i~~~~~D~  222 (343)
                      +...++++|. .+.++.+|||||||+|..+..|++. + ..+|+++|+++.+++.|++++...++     .++.+.++|+
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            3344444443 4478899999999999999988876 3 33899999999999999999887553     4789999998


Q ss_pred             CCCcc-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          223 LDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       223 ~~~~~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..... .++||+|++.+.++++.             +.+.+.|||||++++.....
T Consensus       142 ~~~~~~~~~fD~I~~~~~~~~ip-------------~~l~~~LkpGG~LV~pv~~~  184 (224)
T d1i1na_         142 RMGYAEEAPYDAIHVGAAAPVVP-------------QALIDQLKPGGRLILPVGPA  184 (224)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEESCT
T ss_pred             ccccchhhhhhhhhhhcchhhcC-------------HHHHhhcCCCcEEEEEEccC
Confidence            87654 57899999999887763             56788999999999965443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.54  E-value=1.6e-14  Score=123.13  Aligned_cols=113  Identities=16%  Similarity=0.152  Sum_probs=88.5

Q ss_pred             CCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~l  240 (343)
                      ...|||||||+|..+..+|+.. ...++|+|+++.++..+.+++...+++|+.++++|+..+.   .++++|.|+...+.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            4579999999999999999873 3489999999999999999999999999999999987653   36889999986654


Q ss_pred             ccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .+..- |.........+++.+.++|||||.|++.+-..
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~  147 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR  147 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECCh
Confidence            43310 00000011368899999999999999976433

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.52  E-value=2.2e-14  Score=125.83  Aligned_cols=105  Identities=15%  Similarity=0.174  Sum_probs=87.7

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCCccCCCccEEEEC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDK  237 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~~~~~~fD~V~~~  237 (343)
                      .+.++.+|||+|||+|.++..|++. + ..+|+++|+++.+++.|++|++..+ ..++++..+|+.+...++.||.|+++
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld  161 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD  161 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec
Confidence            4478999999999999999999986 3 3489999999999999999998764 46899999999987667899999874


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..            +...+++++.++|||||++++..++.
T Consensus       162 ~p------------~p~~~l~~~~~~LKpGG~lv~~~P~i  189 (250)
T d1yb2a1         162 IP------------DPWNHVQKIASMMKPGSVATFYLPNF  189 (250)
T ss_dssp             CS------------CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             CC------------chHHHHHHHHHhcCCCceEEEEeCCc
Confidence            21            22246799999999999999877753

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=3e-14  Score=122.01  Aligned_cols=102  Identities=16%  Similarity=0.140  Sum_probs=81.0

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CC---CccEEEE
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ER---QFQLVMD  236 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~---~fD~V~~  236 (343)
                      +.|+.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.++++++..+  ++.++..|+..... ..   .+|+|+.
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQ  131 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEEEEe
Confidence            378999999999999999999986 44589999999999999999988764  89999999988643 22   3444443


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .  +.+.       .+...++.++.++|||||++++..
T Consensus       132 ~--~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         132 D--IAQK-------NQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             C--CCST-------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--ccCh-------hhHHHHHHHHHHHhccCCeEEEEE
Confidence            2  2111       355678899999999999999864

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.51  E-value=1.8e-14  Score=117.22  Aligned_cols=111  Identities=18%  Similarity=0.168  Sum_probs=88.6

Q ss_pred             hhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc--cCCCccEEE
Q 019324          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      +....++.+|||+|||+|.+++.++.+|+.+|+++|.++.+++.++++++..++. +++++++|+.+..  ..++||+|+
T Consensus         9 l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf   88 (152)
T d2esra1           9 IGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVF   88 (152)
T ss_dssp             HCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             HHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeE
Confidence            3333568999999999999999999999889999999999999999999999874 5999999987752  367899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHH--hhccCCCcEEEEEecCC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSV--SKLVAPGGLLVITSCNS  277 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~--~~~LkpgG~lii~~~~~  277 (343)
                      +..++..        ......++.+  .++|+|||++++.+...
T Consensus        89 ~DPPy~~--------~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          89 LDPPYAK--------ETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             ECCSSHH--------HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             echhhcc--------chHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence            8765432        2333445544  46799999999875443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.51  E-value=3.1e-14  Score=123.59  Aligned_cols=103  Identities=9%  Similarity=0.056  Sum_probs=83.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~  239 (343)
                      .++.+|||+|||+|..+..+++.+ ...|+|+|+|+.|++.+++++...  +++..+..|......  +..+|++++...
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~~i~~~  150 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccccccceeEEeecc
Confidence            789999999999999999999874 348999999999999999987655  478889998887653  456777666444


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +.+.       .+...++.++.+.|||||.+++..
T Consensus       151 ~~~~-------~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         151 VAQP-------NQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CCST-------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccch-------HHHHHHHHHHHHhcccCceEEEEe
Confidence            4333       466678899999999999998863

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=5.3e-14  Score=128.77  Aligned_cols=105  Identities=24%  Similarity=0.307  Sum_probs=87.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++++|||||||+|.++..+++.|+.+|+|+|.|+ +++.|+++...++. .++.++++|+.+... +++||+|++....
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            45889999999999999999999988999999997 66888888888876 479999999999875 5789999997666


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      ..+.    .......++..+.++|||||+++-
T Consensus       116 ~~~~----~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         116 YFLL----YESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTBS----TTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeec----cchhHHHHHHHHHhccCCCeEEEe
Confidence            5442    223445677888999999999863

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.49  E-value=1.2e-13  Score=117.55  Aligned_cols=114  Identities=17%  Similarity=0.194  Sum_probs=88.1

Q ss_pred             CCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECccc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGTL  240 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~~l  240 (343)
                      ...|||||||+|.++..+|+. +...++|+|+++.++..|.+++...+++|+.++.+|+..+.   .+.++|.|+++.+-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            458999999999999999987 34489999999999999999999999999999999988754   36789999876543


Q ss_pred             ccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          241 DAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       241 ~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      .+.-- |.....-...+++.+.++|||||.+++.+-+..
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~  150 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG  150 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCcc
Confidence            22200 000000114688999999999999999765433

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.49  E-value=3.2e-14  Score=122.76  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=83.5

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      +.++.+|||||||+|.++..|++.+ .+|+++|+++.+++.|+++....  .|+.++.+|.....+ .++||.|++.+.+
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~  144 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLGYEEEKPYDRVVVWATA  144 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred             hcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc--cccccccCchhhcchhhhhHHHHHhhcch
Confidence            4789999999999999999999885 48999999999999999987654  589999999876543 5789999999888


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .++.             ..+.+.|||||++++...
T Consensus       145 ~~ip-------------~~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         145 PTLL-------------CKPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             SSCC-------------HHHHHTEEEEEEEEEEEC
T ss_pred             hhhh-------------HHHHHhcCCCCEEEEEEc
Confidence            7763             556788999999998544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.48  E-value=1.3e-13  Score=121.68  Aligned_cols=106  Identities=19%  Similarity=0.221  Sum_probs=89.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++...+. .++.+..+|+.+. .+..||+|++..++
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~p~~~D~v~~~~vL  157 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LPVTADVVLLSFVL  157 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCCEEEEEEESCG
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-ccccchhhhccccc
Confidence            456799999999999999999873 338999998 7899999999988876 4799999998874 45579999999998


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +++.     ..+...+|++++++|||||++++...
T Consensus       158 h~~~-----d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         158 LNWS-----DEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccC-----cHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            8762     45667889999999999999998764

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=4e-14  Score=124.96  Aligned_cols=114  Identities=21%  Similarity=0.314  Sum_probs=90.8

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHc---CCCceEEEEccCCCCcc-CCCccEE
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRD---GFSCIKFLVDDVLDTKL-ERQFQLV  234 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~---~~~~i~~~~~D~~~~~~-~~~fD~V  234 (343)
                      .+.++.+|||+|||+|.++..|++. |. .+|+++|+++.+++.|++|+...   ...++.+.++|+.+..+ +++||.|
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV  172 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA  172 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceE
Confidence            3488999999999999999999987 43 48999999999999999998764   23589999999988764 6899999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHH
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEV  286 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~  286 (343)
                      ++.     +       .+...++.++.++|||||++++..++.+ .....+.+
T Consensus       173 ~ld-----l-------p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l  213 (264)
T d1i9ga_         173 VLD-----M-------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEAL  213 (264)
T ss_dssp             EEE-----S-------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred             EEe-----c-------CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHH
Confidence            862     2       1223567999999999999998776653 33444444

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=7.1e-14  Score=127.28  Aligned_cols=105  Identities=18%  Similarity=0.279  Sum_probs=85.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++++|||||||+|.++..+++.|+.+|+|+|.|+.+ ..++++...+++ .++.++++|+.+... .++||+|++....
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            4578999999999999999999987789999999865 667777777776 469999999999875 4799999997655


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      +.+    ........++..+.++|||||.++-
T Consensus       111 ~~l----~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         111 YCL----FYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTB----TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eee----ccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            444    1223455778999999999999874

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=125.57  Aligned_cols=105  Identities=19%  Similarity=0.198  Sum_probs=83.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-~~~fD~V~~~~~l  240 (343)
                      .++++|||||||+|.++..+++.|+.+|+|+|.|+.++.. +++...++. .++.++++|+.+... .++||+|++....
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a-~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQA-MDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHH-HHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHH-HHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence            5688999999999999999999998899999999998764 444445544 589999999999875 5799999997555


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      +.+    ........++....++|||||+++.
T Consensus       113 ~~~----~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         113 YFL----LFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTB----TTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eec----ccccccHHHHHHHHhcCCCCcEEec
Confidence            443    2223455667788899999999874

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=3.4e-14  Score=129.32  Aligned_cols=122  Identities=21%  Similarity=0.224  Sum_probs=95.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----cCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++|+..+|+.+++++++|+.+..     ..++||+|+++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            56889999999999999998865 4599999999999999999999999989999999987742     25689999998


Q ss_pred             ccccccccCCCCh----hhHHHHHHHHhhccCCCcEEEEEecCCC--hHHHHHHHH
Q 019324          238 GTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLVITSCNST--KDELVHEVS  287 (343)
Q Consensus       238 ~~l~~i~~~~~~~----~~~~~~l~~~~~~LkpgG~lii~~~~~~--~~~~~~~~~  287 (343)
                      ......  .....    .....++..+.++|||||+|++++|+..  ..++.+.+.
T Consensus       223 pP~~~~--~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~  276 (318)
T d1wxxa2         223 PPAFAK--GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVA  276 (318)
T ss_dssp             CCCSCC--STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCcccc--chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHH
Confidence            653222  11111    2234677889999999999999988764  344444443

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=9.1e-14  Score=126.86  Aligned_cols=123  Identities=23%  Similarity=0.246  Sum_probs=96.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCc-----cCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-----LERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~-----~~~~fD~V~~  236 (343)
                      .++.+|||+|||+|.++..++..|+.+|+++|+|+.+++.+++|+..+|+ .+++++++|+.+..     ...+||+|++
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            67899999999999999999999877999999999999999999999998 47999999987642     2468999999


Q ss_pred             CccccccccCCCCh----hhHHHHHHHHhhccCCCcEEEEEecCCC--hHHHHHHHH
Q 019324          237 KGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLVITSCNST--KDELVHEVS  287 (343)
Q Consensus       237 ~~~l~~i~~~~~~~----~~~~~~l~~~~~~LkpgG~lii~~~~~~--~~~~~~~~~  287 (343)
                      +.....-  +....    .....++..+.++|+|||+|++++|...  .+++.+.+.
T Consensus       224 DpP~~~~--~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~  278 (324)
T d2as0a2         224 DPPAFVQ--HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMII  278 (324)
T ss_dssp             CCCCSCS--SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCccccC--CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHH
Confidence            7654221  11111    1234578889999999999999888764  344444443

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=9.6e-14  Score=122.64  Aligned_cols=101  Identities=10%  Similarity=0.035  Sum_probs=86.8

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCccCCCccEEEECccc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      ..++.+|||+|||+|.+++.++..|..+|+++|+++.+++.+++|++.+++. +++++++|+.+....+.||.|+++..-
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~  184 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  184 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence            3678999999999999999999988669999999999999999999999985 599999999998777889999875332


Q ss_pred             cccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          241 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       241 ~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      ..           ..++..+.++|++||++.+.
T Consensus       185 ~~-----------~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         185 RT-----------HEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             SG-----------GGGHHHHHHHEEEEEEEEEE
T ss_pred             ch-----------HHHHHHHHhhcCCCCEEEEE
Confidence            11           24568889999999998664

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.45  E-value=1.1e-13  Score=118.65  Aligned_cols=110  Identities=15%  Similarity=0.266  Sum_probs=91.8

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cC
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LE  228 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~  228 (343)
                      +...+++.+ .+.++.+|||||||+|..+..|+.. | .+|+++|.++.+++.+++++...+..|+.++++|..... ..
T Consensus        66 ~~a~ml~~L-~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~  143 (215)
T d1jg1a_          66 MVAIMLEIA-NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK  143 (215)
T ss_dssp             HHHHHHHHH-TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             hHHHHHHhh-ccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc
Confidence            334444444 3478999999999999999999876 5 379999999999999999999999999999999998754 46


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ++||.|++.+.+..+.             ..+.+.|||||++++...
T Consensus       144 ~pfD~Iiv~~a~~~ip-------------~~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         144 APYDVIIVTAGAPKIP-------------EPLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             CCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEEC
T ss_pred             CcceeEEeecccccCC-------------HHHHHhcCCCCEEEEEEc
Confidence            8999999998887773             457778999999998543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=1.2e-13  Score=122.33  Aligned_cols=105  Identities=17%  Similarity=0.245  Sum_probs=86.4

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEEC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDK  237 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~  237 (343)
                      .+.++.+|||+|||+|.++..|++. + ..+|+++|+++.+++.|++++...++ .++.+...|+........||.|+..
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d  179 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD  179 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEec
Confidence            4488999999999999999999986 3 34899999999999999999999887 5788999998665456788988752


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                           +    .   +...+++++.++|||||++++..++.
T Consensus       180 -----~----p---~p~~~l~~~~~~LKpGG~lv~~~P~~  207 (266)
T d1o54a_         180 -----V----P---DPWNYIDKCWEALKGGGRFATVCPTT  207 (266)
T ss_dssp             -----C----S---CGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             -----C----C---CHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence                 2    1   22356799999999999999876643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.41  E-value=3e-13  Score=122.79  Aligned_cols=128  Identities=11%  Similarity=0.087  Sum_probs=97.4

Q ss_pred             hccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc-----cCCCcc
Q 019324          160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-----LERQFQ  232 (343)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~-----~~~~fD  232 (343)
                      ....++.+|||++||+|.+++.++..|+..|+++|+|+.+++.+++|++.+++.  +++++++|+.+.-     ..++||
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            344678999999999999999998888878999999999999999999999873  7999999997652     246899


Q ss_pred             EEEECcccccccc--CCCChhhHHHHHHHHhhccCCCcEEEEEecCCC--hHHHHHHHH
Q 019324          233 LVMDKGTLDAIGL--HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST--KDELVHEVS  287 (343)
Q Consensus       233 ~V~~~~~l~~i~~--~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~--~~~~~~~~~  287 (343)
                      +|++..+.-.-.-  -.........++..+.++|+|||+|++++|...  .+++...+.
T Consensus       220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~  278 (317)
T d2b78a2         220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIE  278 (317)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHH
Confidence            9998754211000  001113445688999999999999999888754  344444443

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.2e-13  Score=121.47  Aligned_cols=105  Identities=13%  Similarity=0.137  Sum_probs=83.2

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc-------CC--CceEEEEccCCCCccC-C-
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-------GF--SCIKFLVDDVLDTKLE-R-  229 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~-------~~--~~i~~~~~D~~~~~~~-~-  229 (343)
                      +.++.+|||||||+|.++..++.. ++.+++|+|+|+.+++.|+++....       |.  .+++|+++|+.+.+.. . 
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~  228 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI  228 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence            477899999999999999998876 6668999999999999998765432       22  4799999999987542 1 


Q ss_pred             -CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 -QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 -~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                       ..|+|+++... +.       .+....+.++.+.|||||++++..
T Consensus       229 ~~advi~~~~~~-f~-------~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         229 ANTSVIFVNNFA-FG-------PEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHCSEEEECCTT-TC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             CcceEEEEccee-cc-------hHHHHHHHHHHHhCCCCcEEEEec
Confidence             35788876543 22       466678899999999999998753

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=2e-13  Score=114.42  Aligned_cols=117  Identities=9%  Similarity=-0.033  Sum_probs=92.7

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cC
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE  228 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~  228 (343)
                      .++.++.++.....+.+|||++||+|.+++.++.+|+.+|+++|.++.+++.+++|++..+..++.++..|+.+..  ..
T Consensus        30 vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~  109 (183)
T d2fpoa1          30 VRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKG  109 (183)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCC
T ss_pred             HHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccc
Confidence            4455555555546688999999999999999999998899999999999999999999888888999999987653  35


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHh--hccCCCcEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~--~~LkpgG~lii~~~  275 (343)
                      .+||+|++..++..        ......+..+.  .+|+++|++++.+.
T Consensus       110 ~~fDlIf~DPPY~~--------~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         110 TPHNIVFVDPPFRR--------GLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             CCEEEEEECCSSST--------TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             cccCEEEEcCcccc--------chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            78999999876532        12334445554  47999999998643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=9.4e-13  Score=113.75  Aligned_cols=102  Identities=16%  Similarity=0.276  Sum_probs=81.9

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEE
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVM  235 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~  235 (343)
                      +.++.+|||+|||+|..+..|++. |. ..|+|+|+|+.+++.++++++..+  ++..+..|......    ...+|+|+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~  148 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEE
Confidence            378999999999999999999987 43 489999999999999999876553  78888888876532    36788887


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +...  +       +.+...++.++.+.|||||+++++.
T Consensus       149 ~d~~--~-------~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         149 EDVA--Q-------PTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             ECCC--S-------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcc--c-------cchHHHHHHHHHHhcccCCeEEEEE
Confidence            6321  1       2455678899999999999999864

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.38  E-value=4.3e-13  Score=112.18  Aligned_cols=124  Identities=14%  Similarity=0.121  Sum_probs=98.0

Q ss_pred             cCccccccccchhhhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCC
Q 019324          145 LNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVL  223 (343)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~  223 (343)
                      .++.+..++.++.++.....+.+|||++||+|.+++.++.+|+.+|+++|.++.+++.+++|+...+.. +++++++|+.
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~  101 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN  101 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch
Confidence            334444666667777766789999999999999999999999889999999999999999999988774 7999999987


Q ss_pred             CCc-----cCCCccEEEECccccccccCCCChhhHHHHHHHHh--hccCCCcEEEEEecC
Q 019324          224 DTK-----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCN  276 (343)
Q Consensus       224 ~~~-----~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~--~~LkpgG~lii~~~~  276 (343)
                      +.-     ...+||+|++..++..        ......+..+.  .+|+|+|++++.+..
T Consensus       102 ~~l~~~~~~~~~fDlIflDPPY~~--------~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         102 RALEQFYEEKLQFDLVLLDPPYAK--------QEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCGGG--------CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhhhhcccCCCcceEEechhhhh--------hHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            642     2458999999877532        22334556664  479999999886543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=7.4e-13  Score=114.16  Aligned_cols=112  Identities=14%  Similarity=0.233  Sum_probs=87.7

Q ss_pred             ccccchhhhh-ccCCCCeEEEEccCccHHHHHHHhc----CC---CcEEEEeCChHHHHHHHHHHHHc-----CCCceEE
Q 019324          151 LKSEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ----GF---SDLTGVDYSEDAINLAQSLANRD-----GFSCIKF  217 (343)
Q Consensus       151 ~~~~~~~~l~-~~~~~~~VLDiGcG~G~~~~~la~~----g~---~~v~gvD~s~~~i~~a~~~~~~~-----~~~~i~~  217 (343)
                      +...+++.+. .+.++.+|||||||+|.++..|++.    |.   .+|+++|+++.+++.++++....     +..++.+
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            3344444443 4578899999999999998888764    21   27999999999999999886543     3358999


Q ss_pred             EEccCCCCcc-CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          218 LVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       218 ~~~D~~~~~~-~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .++|...... .++||.|++.+.++.+.             +.+.+.|||||++++...
T Consensus       146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-------------~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         146 VEGDGRKGYPPNAPYNAIHVGAAAPDTP-------------TELINQLASGGRLIVPVG  191 (223)
T ss_dssp             EESCGGGCCGGGCSEEEEEECSCBSSCC-------------HHHHHTEEEEEEEEEEES
T ss_pred             EecccccccccccceeeEEEEeechhch-------------HHHHHhcCCCcEEEEEEe
Confidence            9999887644 57899999999887763             467889999999998654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.35  E-value=1.4e-12  Score=117.18  Aligned_cols=114  Identities=17%  Similarity=0.190  Sum_probs=88.6

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCCCCc-----cCCCccE
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-----LERQFQL  233 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~~~~-----~~~~fD~  233 (343)
                      ...++.+|||++||+|.++..++..|+ +|++||.|+.+++.|++|+..+++.  +++|+++|+.+..     ....||+
T Consensus       129 ~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             HSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             hccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            445688999999999999999999887 8999999999999999999999874  5999999998752     2578999


Q ss_pred             EEECccccccccCCCC-----hhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          234 VMDKGTLDAIGLHPDG-----PLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~-----~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      |+++..--..  .+..     ......++..+.++|+|||.+++.+++.
T Consensus       208 IilDPP~f~~--~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         208 ILTDPPKFGR--GTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             EEECCCSEEE--CTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             EEECCCcccc--cccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence            9997552111  1111     1334456678899999999766655443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=118.04  Aligned_cols=115  Identities=19%  Similarity=0.188  Sum_probs=85.7

Q ss_pred             ccCCCCeEEEEccCccHHHHHHHhc-CC-CcEEEEeCChHHHHHHHHHHHHcC-----------CCceEEEEccCCCCcc
Q 019324          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDG-----------FSCIKFLVDDVLDTKL  227 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~-~~v~gvD~s~~~i~~a~~~~~~~~-----------~~~i~~~~~D~~~~~~  227 (343)
                      .+.++.+|||+|||+|.++..|++. |. .+|+++|+++.+++.|++|++..+           ..++.+...|+.....
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            4488999999999999999999986 43 389999999999999999987532           2479999999987642


Q ss_pred             ---CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC-hHHHHHHHH
Q 019324          228 ---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  287 (343)
Q Consensus       228 ---~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~-~~~~~~~~~  287 (343)
                         ...||.|++.     +    +   ....++.++.++|||||++++..++-+ ....++.++
T Consensus       175 ~~~~~~fD~V~LD-----~----p---~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~  226 (324)
T d2b25a1         175 DIKSLTFDAVALD-----M----L---NPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIR  226 (324)
T ss_dssp             ------EEEEEEC-----S----S---STTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             ccCCCCcceEeec-----C----c---CHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHH
Confidence               4679998862     1    1   112357999999999999998665543 234444443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=4.7e-12  Score=104.67  Aligned_cols=106  Identities=20%  Similarity=0.188  Sum_probs=78.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-----ccCCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-----~~~~~fD~V~~~  237 (343)
                      .++.+|||+|||+|.+++.++.+|. +++++|.|+.+++.+++|++.+++. .++...+....     ....+||+|+++
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLG-ARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCC-CEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccc-cceeeeehhcccccccccCCccceeEEc
Confidence            5688999999999999999999986 8999999999999999999998873 34454444321     124689999998


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      .++..     +-......+++  ..+|+|||++++.+...
T Consensus       118 PPY~~-----~~~~~l~~l~~--~~ll~~~g~ivie~~~~  150 (171)
T d1ws6a1         118 PPYAM-----DLAALFGELLA--SGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CCTTS-----CTTHHHHHHHH--HTCEEEEEEEEEEEETT
T ss_pred             ccccc-----CHHHHHHHHHH--cCCcCCCeEEEEEecCC
Confidence            76532     11122222222  36899999999876443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=5.1e-12  Score=107.19  Aligned_cols=78  Identities=17%  Similarity=0.235  Sum_probs=69.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ..+.+|||+|||+|.++..++..|..+|+|+|+|+.+++.+++|+..++. +++++.+|+...  +++||+|+++..+..
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~--~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF--NSRVDIVIMNPPFGS  121 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC--CCCCSEEEECCCCSS
T ss_pred             CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh--CCcCcEEEEcCcccc
Confidence            56889999999999999999988877999999999999999999998886 789999998774  568999999988754


Q ss_pred             c
Q 019324          243 I  243 (343)
Q Consensus       243 i  243 (343)
                      .
T Consensus       122 ~  122 (201)
T d1wy7a1         122 Q  122 (201)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=9.2e-12  Score=115.83  Aligned_cols=104  Identities=14%  Similarity=0.149  Sum_probs=77.4

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcC-------C--CceEE-EEccCCCCcc---
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------F--SCIKF-LVDDVLDTKL---  227 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~-------~--~~i~~-~~~D~~~~~~---  227 (343)
                      +.++.+|||||||+|.++..++.. |+.+++|||+|+.+++.|+++....+       .  ..+.+ ..++......   
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~  293 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE  293 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence            478899999999999999999877 66689999999999999999876532       1  12333 3344443321   


Q ss_pred             -CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          228 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       228 -~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                       -..+|+|+++..+ +.       .+....+.++.+.|||||++++.
T Consensus       294 ~~~~adVV~inn~~-f~-------~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         294 LIPQCDVILVNNFL-FD-------EDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             HGGGCSEEEECCTT-CC-------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccceEEEEeccc-Cc-------hHHHHHHHHHHHhcCCCcEEEEe
Confidence             1357888876532 22       56677889999999999999874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.30  E-value=2.8e-12  Score=108.01  Aligned_cols=74  Identities=27%  Similarity=0.416  Sum_probs=63.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ..+++|||+|||+|.++..++..|..+|+|+|+++.+++.|++|.     .+++++++|+.+.  +++||+|++|.++..
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l--~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEI--SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGC--CCCEEEEEECCCC--
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhc--CCcceEEEeCcccch
Confidence            468899999999999999999998778999999999999999986     4789999999774  578999999988754


Q ss_pred             c
Q 019324          243 I  243 (343)
Q Consensus       243 i  243 (343)
                      .
T Consensus       120 ~  120 (197)
T d1ne2a_         120 V  120 (197)
T ss_dssp             -
T ss_pred             h
Confidence            3

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=1.5e-11  Score=108.60  Aligned_cols=136  Identities=16%  Similarity=0.139  Sum_probs=95.5

Q ss_pred             ccCccccccccchhhhhcc--CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEc
Q 019324          144 MLNHVEDLKSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVD  220 (343)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~  220 (343)
                      +..+++.++.++..++...  .+..+|||+|||+|..+..++..+..+|+++|+|+.+++.|++|++.+++. ++.+..+
T Consensus        88 vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~  167 (271)
T d1nv8a_          88 VFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG  167 (271)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES
T ss_pred             ccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeec
Confidence            3344555555555444422  446689999999999999998776569999999999999999999999885 5778888


Q ss_pred             cCCCCcc--CCCccEEEECccccc----------------cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHH
Q 019324          221 DVLDTKL--ERQFQLVMDKGTLDA----------------IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  282 (343)
Q Consensus       221 D~~~~~~--~~~fD~V~~~~~l~~----------------i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~  282 (343)
                      |+.+...  .++||+|++|.+.--                +.-+.++.....   +-+.++|+|||++++.....+.+.+
T Consensus       168 ~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r---~i~~~~L~~~G~l~~Eig~~Q~~~v  244 (271)
T d1nv8a_         168 EFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYR---EFFGRYDTSGKIVLMEIGEDQVEEL  244 (271)
T ss_dssp             STTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHH---HHHHHCCCTTCEEEEECCTTCHHHH
T ss_pred             ccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHH---HHHHHhcCCCCEEEEEECHHHHHHH
Confidence            8877543  378999999965310                000122222222   2256789999999998766554444

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=1.1e-10  Score=106.11  Aligned_cols=114  Identities=21%  Similarity=0.242  Sum_probs=87.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc----C--CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g--~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~  236 (343)
                      .++.+|||.|||+|.++..+.++    +  ...++|+|+++.++..|+.++...+. +..+...|........+||+|++
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhcccccccccccccccccc
Confidence            56679999999999999888653    1  12799999999999999999888775 67788888877666789999999


Q ss_pred             Ccccccccc-----------CCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          237 KGTLDAIGL-----------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       237 ~~~l~~i~~-----------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +.++.....           ..........++..+.+.|+|||++.+..+..
T Consensus       195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            988743210           00111123457899999999999988876644

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=2.1e-11  Score=102.34  Aligned_cols=132  Identities=15%  Similarity=0.196  Sum_probs=97.4

Q ss_pred             ccchhhhhccCCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----
Q 019324          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----  227 (343)
Q Consensus       153 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----  227 (343)
                      ..++..+. ..++..+||++||+|..+..+++. +..+|+|+|.++.|++.+++++...+ .++.++++++.+...    
T Consensus        13 ~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          13 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHH
Confidence            33444442 267889999999999999999886 34589999999999999999998776 489999998876531    


Q ss_pred             --CCCccEEEECcccccccc--CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHH
Q 019324          228 --ERQFQLVMDKGTLDAIGL--HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  286 (343)
Q Consensus       228 --~~~fD~V~~~~~l~~i~~--~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~  286 (343)
                        .++||.|+..-.+....+  ...+.......+..+.++|+|||.+++.++....++.+..+
T Consensus        91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~  153 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKET  153 (192)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHH
Confidence              468999886533321111  11123455678899999999999999988777666555543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.19  E-value=2.9e-12  Score=107.16  Aligned_cols=124  Identities=14%  Similarity=0.066  Sum_probs=92.2

Q ss_pred             CccccccccchhhhhccCCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC--ceEEEEccCC
Q 019324          146 NHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVL  223 (343)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~--~i~~~~~D~~  223 (343)
                      ++.+.+++.++..+.....+.+|||+.||+|.+++..+.+|+..|+.||.+..+++.+++|++..++.  ...+...|+.
T Consensus        25 Pt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~  104 (183)
T d2ifta1          25 PTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL  104 (183)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred             cCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccc
Confidence            34444555556666554567899999999999999999999999999999999999999999988764  3666777654


Q ss_pred             CCc----cCCCccEEEECccccccccCCCChhhHHHHHHHHh--hccCCCcEEEEEecCC
Q 019324          224 DTK----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNS  277 (343)
Q Consensus       224 ~~~----~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~--~~LkpgG~lii~~~~~  277 (343)
                      +..    ...+||+|++..++..        ......++.+.  .+|+++|++++.+...
T Consensus       105 ~~l~~~~~~~~fDlIFlDPPY~~--------~~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         105 DFLKQPQNQPHFDVVFLDPPFHF--------NLAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             HHTTSCCSSCCEEEEEECCCSSS--------CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             ccccccccCCcccEEEechhHhh--------hhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            421    2457999999877643        23334556654  5799999999976543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=7e-11  Score=100.97  Aligned_cols=111  Identities=15%  Similarity=0.125  Sum_probs=84.7

Q ss_pred             hhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-----
Q 019324          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----  227 (343)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-----  227 (343)
                      +..+....++++|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...|+. +++++.+|..+.-.     
T Consensus        48 L~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~  127 (214)
T d2cl5a1          48 MDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK  127 (214)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHH
T ss_pred             HHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhc
Confidence            333334466789999999999999999975 2 248999999999999999999998884 69999999876421     


Q ss_pred             --CCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          228 --ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       228 --~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                        .+.||+|+..+.-+.        ......+.+..++|||||++++..
T Consensus       128 ~~~~~~D~ifiD~~~~~--------~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         128 YDVDTLDMVFLDHWKDR--------YLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             SCCCCEEEEEECSCGGG--------HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             ccccccceeeecccccc--------cccHHHHHHHhCccCCCcEEEEeC
Confidence              357999997643221        122234677889999999988743

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.11  E-value=2.2e-10  Score=96.25  Aligned_cols=106  Identities=14%  Similarity=0.185  Sum_probs=76.3

Q ss_pred             CCCCeEEEEccCccH----HHHHHHhc----CCC-cEEEEeCChHHHHHHHHHH------------------HHcCC---
Q 019324          163 LSSWSVLDIGTGNGL----LLQELSKQ----GFS-DLTGVDYSEDAINLAQSLA------------------NRDGF---  212 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~----~~~~la~~----g~~-~v~gvD~s~~~i~~a~~~~------------------~~~~~---  212 (343)
                      .++.+||++|||+|.    +++.+.+.    +.. +|+|+|+|+.+++.|++..                  ...+.   
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            456799999999997    34444432    111 6999999999999998521                  00000   


Q ss_pred             ----------CceEEEEccCCCCc--cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          213 ----------SCIKFLVDDVLDTK--LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       213 ----------~~i~~~~~D~~~~~--~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                                ..+.+...+.....  ..+.||+|+|.+++.++.     +.....+++++.+.|+|||+|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-----~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-----KTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-----HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-----HHHHHHHHHHHHHHhCCCcEEEEe
Confidence                      13556666666543  257899999999998873     355678899999999999998874

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1e-10  Score=100.12  Aligned_cols=114  Identities=16%  Similarity=0.243  Sum_probs=91.1

Q ss_pred             cccchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc--
Q 019324          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--  226 (343)
Q Consensus       152 ~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~--  226 (343)
                      ...++..+....++++|||||||+|..+.++++. + ..+|+++|.++...+.|++++...|+. +++++.+|+.+..  
T Consensus        47 ~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~  126 (219)
T d2avda1          47 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE  126 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchh
Confidence            3445556666688999999999999999999986 2 248999999999999999999999884 6999999976632  


Q ss_pred             -----cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          227 -----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       227 -----~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                           ..++||+|+...--          .....+++.+.++|+|||++++...
T Consensus       127 ~~~~~~~~~fD~ifiD~dk----------~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         127 LLAAGEAGTFDVAVVDADK----------ENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             HHHTTCTTCEEEEEECSCS----------TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             hhhhcccCCccEEEEeCCH----------HHHHHHHHHHHHHhcCCcEEEEeCC
Confidence                 24689999975321          2334677899999999999999644

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.3e-09  Score=95.14  Aligned_cols=126  Identities=15%  Similarity=0.021  Sum_probs=87.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc-------cCCCccE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-------LERQFQL  233 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~-------~~~~fD~  233 (343)
                      .+..+|||+|||+|.++..|+.. ...+++|+|+|+.+++.|++|++.+++. ++.+...+.....       ..++||+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            44579999999999999998887 2349999999999999999999999884 5888776554322       1467999


Q ss_pred             EEECcccccccc------------CCC-------C---------hhhHHHHHHHHhhccCCCcEEEEEecC-CChHHHHH
Q 019324          234 VMDKGTLDAIGL------------HPD-------G---------PLKRIMYWDSVSKLVAPGGLLVITSCN-STKDELVH  284 (343)
Q Consensus       234 V~~~~~l~~i~~------------~~~-------~---------~~~~~~~l~~~~~~LkpgG~lii~~~~-~~~~~~~~  284 (343)
                      |+||.++..-.-            +++       .         ..-...++++..+.++..|.+.+.... ....++.+
T Consensus       140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~  219 (250)
T d2h00a1         140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKE  219 (250)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHH
T ss_pred             EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHH
Confidence            999987643210            000       0         012345667777888888888665443 34455666


Q ss_pred             HHHh
Q 019324          285 EVSN  288 (343)
Q Consensus       285 ~~~~  288 (343)
                      .+++
T Consensus       220 ~L~~  223 (250)
T d2h00a1         220 ELRI  223 (250)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.2e-08  Score=93.39  Aligned_cols=102  Identities=21%  Similarity=0.272  Sum_probs=79.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEEC
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  237 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~  237 (343)
                      .++.+|||+.||+|.++..|++.+ .+|+|+|.++.+++.|++|+..+++.|+.|+.+|+.+...     ...+|+|+..
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence            567899999999999999999984 5999999999999999999999999999999999877531     3678999875


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..=...          ...++.+.+. +|.-+++ ++|++
T Consensus       290 PPR~G~----------~~~~~~l~~~-~~~~ivY-VSCnp  317 (358)
T d1uwva2         290 PARAGA----------AGVMQQIIKL-EPIRIVY-VSCNP  317 (358)
T ss_dssp             CCTTCC----------HHHHHHHHHH-CCSEEEE-EESCH
T ss_pred             CCCccH----------HHHHHHHHHc-CCCEEEE-EeCCH
Confidence            443221          2345666554 6765554 45654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.94  E-value=8e-10  Score=94.89  Aligned_cols=111  Identities=14%  Similarity=0.209  Sum_probs=88.6

Q ss_pred             cchhhhhccCCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCc----
Q 019324          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK----  226 (343)
Q Consensus       154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~----  226 (343)
                      .++..+....++++||||||++|..+.++++. + ..+++.+|.++...+.|++++...|+. +++++.+|+.+.-    
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~  128 (227)
T d1susa1          49 QFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI  128 (227)
T ss_dssp             HHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHH
Confidence            34455555577899999999999999999875 2 249999999999999999999999884 6999999987642    


Q ss_pred             ----cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          227 ----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       227 ----~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                          ..++||+|+..+-=          .....+++.+.++|+|||++++..
T Consensus       129 ~~~~~~~~fD~iFiDa~k----------~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         129 KDEKNHGSYDFIFVDADK----------DNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             HCGGGTTCBSEEEECSCS----------TTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             hccccCCceeEEEeccch----------hhhHHHHHHHHhhcCCCcEEEEcc
Confidence                14589999975321          234467889999999999999963

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.91  E-value=9.8e-10  Score=95.55  Aligned_cols=99  Identities=19%  Similarity=0.231  Sum_probs=76.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      ....+|||||||+|.++..++++ +..+++.+|+ |..++.+.      ...+++++.+|+.+..+  ..|++++..+++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~ri~~~~gd~~~~~p--~~D~~~l~~vLh  150 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP------PLSGIEHVGGDMFASVP--QGDAMILKAVCH  150 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CCTTEEEEECCTTTCCC--CEEEEEEESSGG
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC------CCCCeEEecCCcccccc--cceEEEEehhhh
Confidence            44579999999999999999987 3338999998 44443221      22589999999986533  459999988887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..     ..++...+|+++++.|+|||++++...
T Consensus       151 ~~-----~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         151 NW-----SDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hC-----CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            65     356778899999999999999999653

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=2e-08  Score=89.00  Aligned_cols=131  Identities=20%  Similarity=0.222  Sum_probs=98.4

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhcCC-CcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--cCCCccEEEECc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG  238 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~-~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--~~~~fD~V~~~~  238 (343)
                      ..++.+|||+++|.|.=+..+++.+. ..|+++|.++.-++.++++++..|+.++.....|.....  ..+.||.|++..
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da  179 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  179 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence            37789999999999999999887643 379999999999999999999999866655555544322  256899999865


Q ss_pred             cccccc---cCCCC--------h----hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhhc
Q 019324          239 TLDAIG---LHPDG--------P----LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQR  292 (343)
Q Consensus       239 ~l~~i~---~~~~~--------~----~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~  292 (343)
                      .....+   -+|+-        .    .....+|.++.+.|||||+++.++|.-..+|.-..+..|-.+
T Consensus       180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~  248 (284)
T d1sqga2         180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR  248 (284)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHh
Confidence            443332   12221        1    112478889999999999999999999888877777665443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.87  E-value=2.3e-09  Score=96.34  Aligned_cols=111  Identities=22%  Similarity=0.319  Sum_probs=83.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc-----CCCceEEEEccCCCCc--cCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-----GFSCIKFLVDDVLDTK--LERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~-----~~~~i~~~~~D~~~~~--~~~~fD~V  234 (343)
                      ..+++||.||+|.|..+..+++. +..+|++||+++.+++.|++.+...     .-++++++.+|+...-  .+++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            55789999999999999999887 3458999999999999999976432     1258999999998753  35789999


Q ss_pred             EECcccccccc-CCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          235 MDKGTLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       235 ~~~~~l~~i~~-~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      +...+ +.... .+........+++.+.+.|+|||++++..
T Consensus       156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            96432 11100 01111223568899999999999999843

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.85  E-value=3.9e-09  Score=93.32  Aligned_cols=109  Identities=22%  Similarity=0.329  Sum_probs=82.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc----------CCCceEEEEccCCCCc-cCCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----------GFSCIKFLVDDVLDTK-LERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~----------~~~~i~~~~~D~~~~~-~~~~f  231 (343)
                      .++.+||.||+|.|..+..+++++..+|+++|+++.+++.|++.+...          ..++++++.+|+.... ..++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            567899999999999999998886668999999999999999865322          1268999999987642 25789


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+|+.... +..  .+........+++.+.+.|+|||++++..
T Consensus       151 DvIi~D~~-~~~--~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         151 DVIIADST-DPV--GPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEEEECC-CCC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeCC-CCC--CCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            99997543 212  12222233578999999999999999854

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=5.4e-09  Score=92.94  Aligned_cols=113  Identities=14%  Similarity=0.190  Sum_probs=83.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc----CCCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~----~~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      ..+++||-||.|.|..+..++++ +..+|+++|+++.+++.|++.+...    ..++++++.+|+...-  .+++||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            45789999999999999999987 3458999999999999999876432    1258999999988753  257899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ....-...  .+........+++.+.+.|+|||++++...+.
T Consensus       168 ~D~~dp~~--~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         168 IDSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             EEC------------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EcCCCCCc--CchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            75332111  01111223578899999999999999966543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.8e-08  Score=84.93  Aligned_cols=107  Identities=18%  Similarity=0.122  Sum_probs=90.0

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ++.+|||+|||.|.-++.++-. +..+++.+|.+..-+...++.....++.|+++++..+.+.....+||+|++.++.  
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~--  142 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA--  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence            4569999999999998888865 3348999999999999999999999998999999999988767789999997653  


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHH
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  281 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~  281 (343)
                               ....+++-+...++++|.+++.-.....++
T Consensus       143 ---------~~~~ll~~~~~~l~~~g~~~~~KG~~~~eE  172 (207)
T d1jsxa_         143 ---------SLNDMVSWCHHLPGEQGRFYALKGQMPEDE  172 (207)
T ss_dssp             ---------SHHHHHHHHTTSEEEEEEEEEEESSCCHHH
T ss_pred             ---------CHHHHHHHHHHhcCCCcEEEEECCCCHHHH
Confidence                     233577888999999999999876555444

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.79  E-value=1e-08  Score=96.17  Aligned_cols=171  Identities=15%  Similarity=0.180  Sum_probs=113.4

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc----C----------CCcEEEEeCChHHHHHHHHHHHHcCCC--c
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFS--C  214 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~----g----------~~~v~gvD~s~~~i~~a~~~~~~~~~~--~  214 (343)
                      +..+++.++.. .++.+|||.+||+|.++..+.+.    +          ...++|+|+++.+...|+.++...+..  +
T Consensus       150 Iv~~mv~ll~~-~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~  228 (425)
T d2okca1         150 LIQAMVDCINP-QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR  228 (425)
T ss_dssp             HHHHHHHHHCC-CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred             hhHhhheeccC-cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence            33444444432 55789999999999999888764    1          125999999999999999998887763  4


Q ss_pred             eEEEEccCCCCccCCCccEEEECccccccccC----------CCChhhHHHHHHHHhhccCCCcEEEEEecCCCh--HHH
Q 019324          215 IKFLVDDVLDTKLERQFQLVMDKGTLDAIGLH----------PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK--DEL  282 (343)
Q Consensus       215 i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~~~----------~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~--~~~  282 (343)
                      ..+...|.........||+|++|.++..-...          ......-..++..+.+.|++||++.+..++...  ...
T Consensus       229 ~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~  308 (425)
T d2okca1         229 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGA  308 (425)
T ss_dssp             CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTH
T ss_pred             ceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhh
Confidence            67888888877667899999999987432110          011122346889999999999998887664321  111


Q ss_pred             HHHHHhhhhccccccccchhhhhcccCCCCeeEecccccCCcccccCccCeeEeEEEEeeC
Q 019324          283 VHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN  343 (343)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~p~~~f~g~~g~~v~~v~f~r~  343 (343)
                      ...++++-...                   +. +..+-.+|.-.|.+ .|..++.+.|.|+
T Consensus       309 ~~~iR~~Ll~~-------------------~~-i~aIi~LP~~~F~~-t~v~t~Ilil~K~  348 (425)
T d2okca1         309 GETIRKRLLQD-------------------FN-LHTILRLPTGIFYA-QGVKANVLFFSKG  348 (425)
T ss_dssp             HHHHHHHHHHH-------------------EE-EEEEEECCSSSSSS-TTCCEEEEEEEES
T ss_pred             HHHHHHHHHHh-------------------cc-hhHhhcCCcccccC-CCCCeEEEEEECC
Confidence            12222221111                   22 23344467667766 6777888888763

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.1e-07  Score=84.40  Aligned_cols=128  Identities=15%  Similarity=0.164  Sum_probs=95.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~  236 (343)
                      .++.+|||++||.|.-+..++..  +...|+++|+++.-++.+++++...|+.++.+...|......    .+.||.|++
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~  172 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  172 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence            67889999999999988888765  334899999999999999999999999999999999877643    267999998


Q ss_pred             Ccccccccc---CCCC----------hhh----HHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhhhh
Q 019324          237 KGTLDAIGL---HPDG----------PLK----RIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ  291 (343)
Q Consensus       237 ~~~l~~i~~---~~~~----------~~~----~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~  291 (343)
                      .......+.   +++.          ...    ...++..+. .|+|||+++.++|.-..+|.-..+..|-.
T Consensus       173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~  243 (293)
T d2b9ea1         173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQ  243 (293)
T ss_dssp             CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHT
T ss_pred             cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHH
Confidence            755333221   1110          011    123555566 47999999999999988887777765543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.76  E-value=3.3e-09  Score=90.31  Aligned_cols=106  Identities=19%  Similarity=0.295  Sum_probs=77.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-C-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l  240 (343)
                      .++.+|||.|||+|.++..+.+. + ...++|+|+++.++..++         +..++++|.........||+|+++..+
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---------~~~~~~~~~~~~~~~~~fd~ii~npP~   88 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---------WAEGILADFLLWEPGEAFDLILGNPPY   88 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---------TEEEEESCGGGCCCSSCEEEEEECCCC
T ss_pred             CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---------cceeeeeehhccccccccceecccCcc
Confidence            56789999999999999888765 2 337999999988654432         467788888877667899999999876


Q ss_pred             cccccCCC----------------------ChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          241 DAIGLHPD----------------------GPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       241 ~~i~~~~~----------------------~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ........                      .......++..+.+.|+|||++.+..++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          89 GIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             CCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             ccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            44321100                      00123467788999999999998876644

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.74  E-value=1.3e-08  Score=88.34  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      ....+|||||||+|.++..+++. +..+++..|+ |..++.+.      ..++++++.+|+.+..  ..+|++++..+++
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~~~--p~aD~~~l~~vLH  149 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFTSI--PNADAVLLKYILH  149 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTTCC--CCCSEEEEESCGG
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCcccCC--CCCcEEEEEeecc
Confidence            34568999999999999999887 3348999998 44444332      1258999999998753  3579999998887


Q ss_pred             ccccCCCChhhHHHHHHHHhhccCCC---cEEEEEe
Q 019324          242 AIGLHPDGPLKRIMYWDSVSKLVAPG---GLLVITS  274 (343)
Q Consensus       242 ~i~~~~~~~~~~~~~l~~~~~~Lkpg---G~lii~~  274 (343)
                      ..     ..++..++|+++++.|+||   |++++..
T Consensus       150 dw-----~d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         150 NW-----TDKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             GS-----CHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             cC-----ChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            65     3567788999999999998   6777754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.73  E-value=3.1e-08  Score=88.96  Aligned_cols=128  Identities=15%  Similarity=0.172  Sum_probs=98.1

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-CCCccEEEECc
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-~~~fD~V~~~~  238 (343)
                      ..++.+|||++||.|.=+..++..  +...++++|.++.-++.+++++...++.++.+...|...... ...||.|++..
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa  193 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  193 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence            478899999999999988888765  223799999999999999999999998888888888776643 67899999865


Q ss_pred             cccccc---cCCCC-----h-------hhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          239 TLDAIG---LHPDG-----P-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       239 ~l~~i~---~~~~~-----~-------~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                      .....+   .+|+.     .       .....++.++.+.|||||+++.++|.-..+|.-..+..|
T Consensus       194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~  259 (313)
T d1ixka_         194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWA  259 (313)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred             ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHH
Confidence            433332   12221     1       112367889999999999999999999887766666544

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.69  E-value=1.9e-08  Score=89.83  Aligned_cols=112  Identities=18%  Similarity=0.293  Sum_probs=82.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc----CCCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~----~~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      ..+++||-||.|.|..+..++++ +..+|+++|+++.+++.|++.+...    ..++++++.+|....-  ..++||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            56789999999999999999997 3458999999999999999976432    1258999999988753  257899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ....- -.  .+........+++.+.+.|+|||+++....+.
T Consensus       185 ~D~~d-p~--~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         185 TDSSD-PV--GPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             ECCC----------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             EcCCC-CC--CcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            86432 12  22222344578899999999999999965433

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.64  E-value=3.5e-08  Score=84.88  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC-CCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~~~~l~  241 (343)
                      .++++|||||||+|.++..|++.+. +|+++|+++.+++.++++....  ++++++.+|+.+..+. .....|++|-.+.
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~--~n~~i~~~D~l~~~~~~~~~~~vv~NLPYn   96 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPKNQSYKIFGNIPYN   96 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCSSCCCEEEEECCGG
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc--cchhhhhhhhhhccccccccceeeeeehhh
Confidence            6789999999999999999999864 8999999999999999887544  5899999999998753 3334577776653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.8e-08  Score=86.36  Aligned_cols=111  Identities=20%  Similarity=0.330  Sum_probs=82.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHH----cCCCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR----DGFSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~----~~~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      ..+++||-||.|.|..+..+.+. +..+++++|+++.+++.|++.+..    ..-++++++.+|+...-  ..++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            45789999999999999999987 456999999999999999987643    12268999999987753  257899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +... +-.  .+........+++.+.+.|+|||++++...+
T Consensus       157 ~D~~-~p~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         157 TDSS-DPM--GPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EECC--------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EcCC-CCC--CcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            8632 212  1222233346889999999999999996543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=4.5e-08  Score=86.16  Aligned_cols=111  Identities=23%  Similarity=0.310  Sum_probs=85.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc----CCCceEEEEccCCCCc--cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTK--LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~----~~~~i~~~~~D~~~~~--~~~~fD~V~  235 (343)
                      ..+++||-||.|.|..+..++++ +..+|+.+|+++.+++.|++.+...    .-++++++.+|+...-  .+++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            55789999999999999999987 4569999999999999999976431    2258999999987753  357899999


Q ss_pred             ECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          236 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       236 ~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ...+- ...  +....-...+++.+.++|+|||+++....+
T Consensus       154 ~D~~~-p~~--~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         154 VDSTE-PVG--PAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             ESCSS-CCS--CCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCC-CCC--cchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            86432 121  111122346889999999999999986544

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.58  E-value=4.2e-08  Score=80.97  Aligned_cols=118  Identities=17%  Similarity=0.260  Sum_probs=87.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc------CCCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~------~~~fD~V~~  236 (343)
                      .++..++|..||.|..+..+++.+ .+|+|+|.++.+++.+++..    .+++.+++.+..+...      .+.+|.|+.
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~   91 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAALGVERVDGILA   91 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHHcCCCccCEEEE
Confidence            778999999999999999999985 48999999999999998742    2589999998877531      367998887


Q ss_pred             CccccccccCC--CChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHH
Q 019324          237 KGTLDAIGLHP--DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  285 (343)
Q Consensus       237 ~~~l~~i~~~~--~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~  285 (343)
                      .-.+....++.  .+.......|....+.|+|||.+++.++....+..+..
T Consensus        92 DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~  142 (182)
T d1wg8a2          92 DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKR  142 (182)
T ss_dssp             ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHH
T ss_pred             EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHH
Confidence            54332221111  11233445788899999999999999887655544443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=9.4e-08  Score=78.76  Aligned_cols=115  Identities=22%  Similarity=0.281  Sum_probs=81.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCCCc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~~f  231 (343)
                      .++.+||||||+.|.++..+.+.  ....++++|+.+.           ..++++.++++|+.+..         ...++
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcce
Confidence            67889999999999999998875  3348999998762           23468999999998753         14689


Q ss_pred             cEEEECccccccccCC----CChhhHHHHHHHHhhccCCCcEEEEEec-CCChHHHHHHHHh
Q 019324          232 QLVMDKGTLDAIGLHP----DGPLKRIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSN  288 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~----~~~~~~~~~l~~~~~~LkpgG~lii~~~-~~~~~~~~~~~~~  288 (343)
                      |+|++.+..+.-....    .........+.-+.++|++||.+++=.+ ......+...+..
T Consensus        90 DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~  151 (180)
T d1ej0a_          90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             eEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence            9999987654432100    0011223556667899999999999444 4445666666663

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.57  E-value=1.3e-07  Score=81.82  Aligned_cols=98  Identities=13%  Similarity=0.206  Sum_probs=73.2

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~  242 (343)
                      ...+|||||||+|.++..+++. +..+++++|+.+. ++.++      ..+++.+..+|+.+..+  ..|+++...+++ 
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~------~~~r~~~~~~d~~~~~P--~ad~~~l~~vlh-  150 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP------SYPGVEHVGGDMFVSIP--KADAVFMKWICH-  150 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC------CCTTEEEEECCTTTCCC--CCSCEECSSSST-
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc------cCCceEEecccccccCC--CcceEEEEEEee-
Confidence            3568999999999999999988 3348999999653 32222      11589999999977533  356666665554 


Q ss_pred             cccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          243 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       243 i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                          .....+...+|+++++.|+|||.+++...
T Consensus       151 ----~~~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         151 ----DWSDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             ----TSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             ----cCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence                34457788899999999999999888643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.56  E-value=6.8e-08  Score=85.61  Aligned_cols=112  Identities=18%  Similarity=0.329  Sum_probs=85.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHc----CCCceEEEEccCCCCc--c-CCCccEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTK--L-ERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~----~~~~i~~~~~D~~~~~--~-~~~fD~V  234 (343)
                      ..+++||-||-|.|..+..+++. +..+++++|+++.+++.+++.+...    ..++++++.+|....-  . .++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            45789999999999999999988 4458999999999999999966331    1258999999987653  2 4589999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      +.... +-.  .+....-...+++.+.+.|+|||++++...+.
T Consensus       159 i~D~~-dp~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         159 IVDSS-DPI--GPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             EECCC-CTT--SGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCC-CCC--CcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            97533 211  11222334578899999999999999975544

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=1.5e-07  Score=90.36  Aligned_cols=170  Identities=12%  Similarity=0.114  Sum_probs=106.6

Q ss_pred             ccccchhhhhccCCCCeEEEEccCccHHHHHHHhc----CC---------------CcEEEEeCChHHHHHHHHHHHHcC
Q 019324          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ----GF---------------SDLTGVDYSEDAINLAQSLANRDG  211 (343)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~----g~---------------~~v~gvD~s~~~i~~a~~~~~~~~  211 (343)
                      +.++++.++.. .++.+|+|.+||+|.++..+.+.    ..               ..++|+|+++.+...|+.++...+
T Consensus       152 Iv~~mv~ll~~-~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~  230 (524)
T d2ar0a1         152 LIKTIIHLLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD  230 (524)
T ss_dssp             HHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred             hhHhhhhcccC-ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence            33444444433 55779999999999998876553    10               158999999999999999887776


Q ss_pred             CC-----ceEEEEccCCCCc--cCCCccEEEECcccccccc-------CCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          212 FS-----CIKFLVDDVLDTK--LERQFQLVMDKGTLDAIGL-------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       212 ~~-----~i~~~~~D~~~~~--~~~~fD~V~~~~~l~~i~~-------~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      ..     .-.+...+.....  ....||+|++|.++..-..       .+.....-..++..+.+.|+|||++.++.+..
T Consensus       231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence            52     1234444444322  2367999999988743210       01111223468999999999999998876643


Q ss_pred             Ch--HHHHHHHHhhhhccccccccchhhhhcccCCCCeeEecccccCCcccccCccCeeEeEEEEee
Q 019324          278 TK--DELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR  342 (343)
Q Consensus       278 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~p~~~f~g~~g~~v~~v~f~r  342 (343)
                      ..  ...-..++++-..                   .+. +..+-.+|.-.|.+ .|..++.+.|.|
T Consensus       311 ~Lf~~~~~~~iR~~Ll~-------------------~~~-i~aII~LP~~~F~~-t~i~t~Il~l~K  356 (524)
T d2ar0a1         311 VLFEGGKGTDIRRDLMD-------------------KCH-LHTILRLPTGIFYA-QGVKTNVLFFTK  356 (524)
T ss_dssp             HHHCCTHHHHHHHHHHH-------------------HEE-EEEEEECCSSCSSS-CSCCEEEEEEEE
T ss_pred             HhhhhhhhHHHHHHHHH-------------------cCC-ceEEEECCCCcCCC-CCCCeEEEEEEC
Confidence            21  1111122222111                   122 33444567777877 678888888876

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=3.2e-07  Score=78.60  Aligned_cols=110  Identities=18%  Similarity=0.227  Sum_probs=88.7

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEEECc
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKG  238 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~~~~  238 (343)
                      ...+|+|||+|.|.-++.++-. +..+++-+|.+..-+...+......++.++.++...+....    ..+.||+|++.+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            4679999999999988888763 44589999999999999999999999999999998776542    246899999976


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                      +.           ....+++-+...+++||.+++.-.....+++..
T Consensus       150 va-----------~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~  184 (239)
T d1xdza_         150 VA-----------RLSVLSELCLPLVKKNGLFVALKAASAEEELNA  184 (239)
T ss_dssp             CS-----------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHH
T ss_pred             hh-----------CHHHHHHHHhhhcccCCEEEEECCCChHHHHHH
Confidence            53           334677899999999999999877665555544

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.46  E-value=9e-09  Score=89.19  Aligned_cols=76  Identities=20%  Similarity=0.323  Sum_probs=63.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC-CCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~-~~fD~V~~~~~l~  241 (343)
                      .++.+|||||||+|.++..|++.+. +|+++|+++.+++.+++++...  ++++++.+|+.+.+.+ ..++.|+++-.++
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~--~n~~ii~~D~l~~~~~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLN--TRVTLIHQDILQFQFPNKQRYKIVGNIPYH  104 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTC--SEEEECCSCCTTTTCCCSSEEEEEEECCSS
T ss_pred             CCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhc--cchhhhhhhhhccccccceeeeEeeeeehh
Confidence            5788999999999999999999964 8999999999999998776533  5899999999998764 5566777776653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.35  E-value=2.8e-07  Score=84.45  Aligned_cols=100  Identities=19%  Similarity=0.109  Sum_probs=77.4

Q ss_pred             CCCeEEEEccCccHHHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCc---------------eEEEEccCCCCc-
Q 019324          164 SSWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSC---------------IKFLVDDVLDTK-  226 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~---------------i~~~~~D~~~~~-  226 (343)
                      ++.+|||..||+|..++..+. .|...|++.|+|+.+++.+++|++.++..+               +.+.+.|+.... 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            477999999999999997655 466689999999999999999999887532               556666655432 


Q ss_pred             -cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          227 -LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       227 -~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                       ....||+|.... +          .....+++.+.+.++.||+|.++.
T Consensus       125 ~~~~~fDvIDiDP-f----------Gs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDP-F----------GSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECC-S----------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCC-C----------CCcHHHHHHHHHHhccCCEEEEEe
Confidence             245799888643 1          223468899999999999999863

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.6e-06  Score=74.55  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=65.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .++..|||||+|.|.++..|++.+. +|+++++++.+++..++.+..... .+++++.+|+.+..++ .+..|++|-.+.
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-~~~~vV~NLPY~   97 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTCVANLPYQ   97 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CCSEEEEECCGG
T ss_pred             CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-hhhhhhcchHHH
Confidence            5688999999999999999999974 999999999999999998866543 4899999999998765 356788876664

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=5.4e-07  Score=77.99  Aligned_cols=76  Identities=14%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccC------CCccEEEE
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE------RQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~------~~fD~V~~  236 (343)
                      .++..|||||||.|.++..|++.+ .+|+++|+++.+++..+++....  ++++++.+|+.+.++.      +..-.|+.
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~l~~~~~~~~~~~~~~~~vvg   96 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRVFG   96 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhc--cchhHHhhhhhhhcccccccccCCCeEEEe
Confidence            568899999999999999999986 48999999999999998755333  4899999999987542      22236667


Q ss_pred             Ccccc
Q 019324          237 KGTLD  241 (343)
Q Consensus       237 ~~~l~  241 (343)
                      |-.++
T Consensus        97 NlPY~  101 (252)
T d1qyra_          97 NLPYN  101 (252)
T ss_dssp             ECCTT
T ss_pred             cchHH
Confidence            66554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.09  E-value=2.7e-06  Score=72.51  Aligned_cols=99  Identities=21%  Similarity=0.336  Sum_probs=65.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHh----cC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCcc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSK----QG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~----~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD  232 (343)
                      .++++|||||++.|..+..++.    .+ ..+++|+|+++........     ..++++++++|..+...     ...+|
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----~~~~I~~i~gDs~~~~~~~~l~~~~~d  153 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSDLTTFEHLREMAHP  153 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----GCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----cccceeeeecccccHHHHHHHHhcCCC
Confidence            4578999999999987766553    22 3489999998754433221     12589999999876532     34678


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +|+..+.  |.    .  .....-+ +...+|++||++++...
T Consensus       154 lIfID~~--H~----~--~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         154 LIFIDNA--HA----N--TFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             EEEEESS--CS----S--HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             EEEEcCC--cc----h--HHHHHHH-HHhcccCcCCEEEEEcC
Confidence            7775432  11    1  2222223 35689999999999643

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.03  E-value=2.1e-06  Score=72.99  Aligned_cols=122  Identities=9%  Similarity=0.091  Sum_probs=72.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~  241 (343)
                      .+..+|+|+|||.|.++..++.+. ...|.|+++--..-+ ........+..-+.+...+-.....+...|+|+|...-.
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~es  143 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGES  143 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccccccccchhhhhHHhcCCCcCCEEEeeCCCC
Confidence            667899999999999999999873 236788887422000 000001111112444444333333467899999974321


Q ss_pred             ccccCCCC---hhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHhh
Q 019324          242 AIGLHPDG---PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  289 (343)
Q Consensus       242 ~i~~~~~~---~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~  289 (343)
                          .+..   ......+++-+.+.|+|||-+++=.......+..+.++.+
T Consensus       144 ----s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~l  190 (257)
T d2p41a1         144 ----SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEAL  190 (257)
T ss_dssp             ----CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHH
T ss_pred             ----CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHH
Confidence                1111   1233467788889999999999865555555555555433

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.35  E-value=0.00013  Score=62.35  Aligned_cols=76  Identities=14%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc---C------CCceEEEEccCCCCc--cCCCccE
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD---G------FSCIKFLVDDVLDTK--LERQFQL  233 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~---~------~~~i~~~~~D~~~~~--~~~~fD~  233 (343)
                      ..+|||+-||.|..+..++..|+ +|+++|-++......+..+...   .      ..+++++.+|..++.  ....||+
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv  167 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence            45899999999999999999986 8999999998877777654332   1      137999999976643  3567999


Q ss_pred             EEECcccc
Q 019324          234 VMDKGTLD  241 (343)
Q Consensus       234 V~~~~~l~  241 (343)
                      |+....+.
T Consensus       168 IYlDPMFp  175 (250)
T d2oyra1         168 VYLDPMFP  175 (250)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCc
Confidence            99887764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.12  E-value=0.00088  Score=53.81  Aligned_cols=97  Identities=22%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC-------ccCCCc
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLERQF  231 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~-------~~~~~f  231 (343)
                      +..++.+||-+|||. |.++..+++. |+.+|+++|.++.-++.+++.    |..  .++...-.+.       .....+
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~--~~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT--DILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS--EEECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc--ccccccchhHHHHHHHHhhccCc
Confidence            347789999999986 7778888876 766899999999999988863    321  2221111111       012459


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      |+|+..-.-.             ..++...++|+|+|.+++....
T Consensus        98 D~vid~~g~~-------------~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          98 DRVIMAGGGS-------------ETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             EEEEECSSCT-------------THHHHHHHHEEEEEEEEECCCC
T ss_pred             ceEEEccCCH-------------HHHHHHHHHHhcCCEEEEEeec
Confidence            9998743211             2347888999999999996543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.05  E-value=0.0013  Score=52.24  Aligned_cols=95  Identities=19%  Similarity=0.172  Sum_probs=64.2

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----------cC
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE  228 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----------~~  228 (343)
                      ..++.+||-+||| .|.++..+++. |+ +|+++|.++.-++.+++.    +. ...+ ..+-....           ..
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga-~~~~-~~~~~~~~~~~~~~~~~~~~g   96 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GA-DVTL-VVDPAKEEESSIIERIRSAIG   96 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TC-SEEE-ECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CC-cEEE-eccccccccchhhhhhhcccc
Confidence            3678899999998 56666666665 65 899999999999999873    22 2222 22221111           13


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ..+|+|+....-          .   ..++.+.++|+|+|++++....
T Consensus        97 ~g~D~vid~~g~----------~---~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          97 DLPNVTIDCSGN----------E---KCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             SCCSEEEECSCC----------H---HHHHHHHHHSCTTCEEEECSCC
T ss_pred             cCCceeeecCCC----------h---HHHHHHHHHHhcCCceEEEecC
Confidence            568999864221          1   3458888999999999986543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00057  Score=54.51  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=63.0

Q ss_pred             cCCCCeEEEEccC-ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc-cCCCC--ccCCCccEEEE
Q 019324          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDT--KLERQFQLVMD  236 (343)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~-D~~~~--~~~~~fD~V~~  236 (343)
                      ..++.+||-+||| .|.++..+++. |+ +|+++|.++..++.+++.    |.+  .++.. +-.+.  ...+.+|+|+.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~--~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD--HYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc--EEeeccchHHHHHhhhcccceEEE
Confidence            3678999999998 66777777765 76 899999999999988863    322  22221 11111  12467998886


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      .-....    .       ..+....++|+|+|++++...
T Consensus        98 ~~~~~~----~-------~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          98 CASSLT----D-------IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             CCSCST----T-------CCTTTGGGGEEEEEEEEECCC
T ss_pred             EecCCc----c-------chHHHHHHHhhccceEEEecc
Confidence            321110    0       012567889999999988643

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.96  E-value=0.0027  Score=55.34  Aligned_cols=99  Identities=15%  Similarity=0.159  Sum_probs=69.7

Q ss_pred             eEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECccccccc
Q 019324          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l~~i~  244 (343)
                      +|||+.||.|.+...+.+.|+.-+.++|+++.+++..+.|.      ...++.+|+.+...  -...|+++.......+.
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS   75 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISSDEFPKCDGIIGGPPCQSWS   75 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC------CSEEEESCTTTSCGGGSCCCSEEEECCCCTTTS
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC------CCCCccCChhhCCHhHcccccEEeecccccccc
Confidence            79999999999999998889877789999999999888875      23567899998754  24789999876655543


Q ss_pred             c---C--CCCh-hhHHHHHHHHhhccCCCcEEEE
Q 019324          245 L---H--PDGP-LKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       245 ~---~--~~~~-~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      .   .  ..+. ....--+-++.+.++|. ++++
T Consensus        76 ~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk-~~~l  108 (324)
T d1dcta_          76 EGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLA  108 (324)
T ss_dssp             SSSCCCCSSSHHHHHHHHHHHHHHHHCCS-EEEE
T ss_pred             cccccccccccccchHHHHHHHHHhhCCc-eeec
Confidence            2   1  1111 12222233456777897 4444

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.93  E-value=0.0024  Score=52.19  Aligned_cols=106  Identities=18%  Similarity=0.145  Sum_probs=67.3

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  229 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~  229 (343)
                      +..++.+||-+|||. |.++..+++. |...|+++|.++.-++.|++.    |   ..... +-.+..         ...
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G---a~~~~-~~~~~~~~~~i~~~t~g~   93 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G---FEIAD-LSLDTPLHEQIAALLGEP   93 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T---CEEEE-TTSSSCHHHHHHHHHSSS
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c---ccEEE-eCCCcCHHHHHHHHhCCC
Confidence            347799999999998 5566666654 777999999999999988863    3   22222 211111         134


Q ss_pred             CccEEEECccccccccCCC--ChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPD--GPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~--~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+|+++.....+.......  ........++.+.++++|||++.+..
T Consensus        94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            6899997433221100000  00111246799999999999999864

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00094  Score=59.15  Aligned_cols=59  Identities=15%  Similarity=0.120  Sum_probs=50.6

Q ss_pred             CCCeEEEEccCccHHHHHHHhcC-CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~  225 (343)
                      .+.+|||||.|.|.++..|++.+ ..+|+++|+++..++..++....   .++.++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---SPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---SSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---CCcEEEeCchhhc
Confidence            57799999999999999999873 45899999999999999987642   4789999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.00066  Score=54.82  Aligned_cols=91  Identities=19%  Similarity=0.269  Sum_probs=62.1

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC------------ccC
Q 019324          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT------------KLE  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~------------~~~  228 (343)
                      .++.+||-+|||. |.++..+++. |+.+|+++|.++..++.+++.    |..  .++  |..+.            ...
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi--~~~~~~~~~~~~~i~~~~~~   98 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD--LTL--NRRETSVEERRKAIMDITHG   98 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS--EEE--ETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce--EEE--eccccchHHHHHHHHHhhCC
Confidence            6689999999983 6677777766 766899999999999988763    321  122  22111            113


Q ss_pred             CCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          229 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      ..+|+|+..-.-.             ..++...++|+|||++++..
T Consensus        99 ~g~Dvvid~vG~~-------------~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          99 RGADFILEATGDS-------------RALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             SCEEEEEECSSCT-------------THHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEeecCCch-------------hHHHHHHHHhcCCCEEEEEe
Confidence            4689988632111             23478889999999998764

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.74  E-value=0.0021  Score=54.55  Aligned_cols=111  Identities=15%  Similarity=0.087  Sum_probs=77.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCC-----------------------------------------CcEEEEeCChHHHH
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGF-----------------------------------------SDLTGVDYSEDAIN  201 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-----------------------------------------~~v~gvD~s~~~i~  201 (343)
                      ..+..++|..||+|.+.+..+....                                         ..++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            4566899999999999887654200                                         13679999999999


Q ss_pred             HH---HHHHHHcCCC-ceEEEEccCCCCcc------CCCccEEEECcccccccc-CCC-ChhhHHHHHHHHhhccCCCcE
Q 019324          202 LA---QSLANRDGFS-CIKFLVDDVLDTKL------ERQFQLVMDKGTLDAIGL-HPD-GPLKRIMYWDSVSKLVAPGGL  269 (343)
Q Consensus       202 ~a---~~~~~~~~~~-~i~~~~~D~~~~~~------~~~fD~V~~~~~l~~i~~-~~~-~~~~~~~~l~~~~~~LkpgG~  269 (343)
                      .|   ++|+...|+. .+.+.+.|+.+...      +...++|++|.....-.- ... .......++..+.++|.....
T Consensus       129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~  208 (249)
T d1o9ga_         129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  208 (249)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence            98   4688888874 69999999877542      456899999987754321 111 123455677778888865555


Q ss_pred             EEEE
Q 019324          270 LVIT  273 (343)
Q Consensus       270 lii~  273 (343)
                      ++++
T Consensus       209 ~~it  212 (249)
T d1o9ga_         209 IAVT  212 (249)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.67  E-value=0.0031  Score=55.31  Aligned_cols=102  Identities=11%  Similarity=0.077  Sum_probs=71.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc--CCCccEEEECccc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTL  240 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~--~~~fD~V~~~~~l  240 (343)
                      ..+.+|||+.||.|.++..|.+.|+.-+.++|+++.+++..+.|..     +.  .++|+.+...  -..+|+++.....
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-----~~--~~~Di~~~~~~~~~~~Dll~ggpPC   81 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-----EK--PEGDITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-----CC--CBSCGGGSCGGGSCCCSEEEEECCC
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-----CC--CcCchhcCchhhcceeeeeeccccc
Confidence            4578999999999999999999898778889999999999998873     21  2478877653  2478999987655


Q ss_pred             cccccC------CCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          241 DAIGLH------PDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       241 ~~i~~~------~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      ..+..-      .+........+-++.+.++|. ++++
T Consensus        82 q~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~-~~~l  118 (327)
T d2c7pa1          82 QAFSISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFM  118 (327)
T ss_dssp             TTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEE
T ss_pred             chhhhhhhhcCCcccchhHHHHHHHHHhccCCc-EEec
Confidence            444321      011112333334566777897 4444

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.60  E-value=0.0053  Score=49.01  Aligned_cols=97  Identities=18%  Similarity=0.165  Sum_probs=66.3

Q ss_pred             cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cCCCc
Q 019324          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LERQF  231 (343)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~~~f  231 (343)
                      ..++.+||-+|||. |.++..+++. |+..|+.+|.++.-++.+++.    |..  .++...-.+..        ..+.+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~~G~   99 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT--DCLNPRELDKPVQDVITELTAGGV   99 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC--cccCCccchhhhhhhHhhhhcCCC
Confidence            47789999999987 7777777776 777899999999988888863    322  22221111111        14678


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEecCC
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSCNS  277 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~~~~  277 (343)
                      |+++..-..             ...++...+.|++| |.+++.....
T Consensus       100 d~vie~~G~-------------~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2         100 DYSLDCAGT-------------AQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             SEEEESSCC-------------HHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             cEEEEeccc-------------chHHHHHHHHhhcCCeEEEecCCCC
Confidence            999864221             13458899999996 9998865443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0057  Score=48.43  Aligned_cols=96  Identities=18%  Similarity=0.129  Sum_probs=63.5

Q ss_pred             CCCCeEEEEccCccH-HHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCCCc
Q 019324          163 LSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQF  231 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~-~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~~f  231 (343)
                      .++.+||-+|||... ++..+++. |+.+|+++|.++.-++.|++.    |.+.  ++..+-.+..         ....+
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~~--~~~~~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GADL--VLQISKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCSE--EEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCcc--cccccccccccccccccccCCCCc
Confidence            678899999998654 44445544 776899999999999988863    3221  2221111110         13578


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      |+|+....-             ...++...+++++||++++.....
T Consensus        99 Dvvid~~G~-------------~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          99 EVTIECTGA-------------EASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             SEEEECSCC-------------HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             eEEEeccCC-------------chhHHHHHHHhcCCCEEEEEecCC
Confidence            999874321             134588999999999999865433

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.011  Score=51.83  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCC--cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----CCCccEEEECc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKG  238 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~--~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----~~~fD~V~~~~  238 (343)
                      +.+|+|+.||.|.+...|...|..  -+.++|+++.+++..+.|+     ++..++.+|+.+...    ...+|+++...
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp   76 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence            568999999999999888777764  3789999999999988875     355677888887653    23689999877


Q ss_pred             cccccc
Q 019324          239 TLDAIG  244 (343)
Q Consensus       239 ~l~~i~  244 (343)
                      ....+.
T Consensus        77 PCq~fS   82 (343)
T d1g55a_          77 PCQPFT   82 (343)
T ss_dssp             C-----
T ss_pred             cccccc
Confidence            665553

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0043  Score=49.34  Aligned_cols=90  Identities=17%  Similarity=0.293  Sum_probs=62.7

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCC
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  229 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~  229 (343)
                      +.++.+||-.|+  |.|..+..+++. |+ +|++++-++...+.+++    .|.+.  ++  |..+..         ...
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~~--vi--~~~~~~~~~~i~~~t~~~   96 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAHE--VF--NHREVNYIDKIKKYVGEK   96 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSE--EE--ETTSTTHHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCccc--cc--ccccccHHHHhhhhhccC
Confidence            367889999997  567777777776 66 89999999887777765    34332  22  332221         145


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+|+|++...           .   ..++...++|+|+|+++...
T Consensus        97 g~d~v~d~~g-----------~---~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          97 GIDIIIEMLA-----------N---VNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             CEEEEEESCH-----------H---HHHHHHHHHEEEEEEEEECC
T ss_pred             CceEEeeccc-----------H---HHHHHHHhccCCCCEEEEEe
Confidence            6999997421           1   24588889999999999863

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.07  E-value=0.003  Score=53.19  Aligned_cols=45  Identities=27%  Similarity=0.244  Sum_probs=41.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  208 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~  208 (343)
                      .++..|||..||+|..+.+..+.|- +.+|+|+++..++.|++++.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            6789999999999999999999874 89999999999999999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.04  E-value=0.0066  Score=47.72  Aligned_cols=93  Identities=15%  Similarity=0.222  Sum_probs=58.3

Q ss_pred             cCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------cCCCccE
Q 019324          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQL  233 (343)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------~~~~fD~  233 (343)
                      ..++.+||-+|||. |.++..+++. |. +|+++|.++.-++.+++.    |..  .++...-.+..      ..+.++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKL----GAS--LTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhcc----Ccc--ccccccchhHHHHHHHhhcCCccc
Confidence            36788999999974 4556666665 64 899999999999888763    322  22322211110      1223344


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |++...           .   ..++...++|+|||++++...
T Consensus        98 i~~~~~-----------~---~~~~~~~~~l~~~G~iv~~G~  125 (166)
T d1llua2          98 LVTAVS-----------N---SAFGQAIGMARRGGTIALVGL  125 (166)
T ss_dssp             EECCSC-----------H---HHHHHHHTTEEEEEEEEECCC
T ss_pred             cccccc-----------c---hHHHHHHHHhcCCcEEEEEEe
Confidence            443221           1   235788899999999988643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.03  E-value=0.0022  Score=55.75  Aligned_cols=46  Identities=9%  Similarity=-0.065  Sum_probs=42.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHH
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR  209 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~  209 (343)
                      .++..|||..||+|..+.+..+.|- +.+|+|+++..++.|++++..
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence            6889999999999999999999975 899999999999999988754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.97  E-value=0.0078  Score=47.45  Aligned_cols=95  Identities=20%  Similarity=0.251  Sum_probs=63.1

Q ss_pred             cCCCCeEEEEccC--ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCCc
Q 019324          162 YLSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQF  231 (343)
Q Consensus       162 ~~~~~~VLDiGcG--~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~f  231 (343)
                      ..++.+||-+||+  .|.++..+++. |...|+++|.++.-++.+++.    |.+  .++..+-.+..       ....+
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD--YVINASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc--eeeccCCcCHHHHHHHHhhcccc
Confidence            3678899999973  55556655554 767999999999988888864    322  22222222111       13569


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      |+|+....-             ...++.+.++|+|||++++...
T Consensus        99 d~vid~~g~-------------~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          99 DAVIDLNNS-------------EKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             EEEEESCCC-------------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             hhhhccccc-------------chHHHhhhhhcccCCEEEEecc
Confidence            999974321             1234778899999999988644

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.78  E-value=0.016  Score=45.93  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             cCCCCeEEEEccCccH-HHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------cCCCccE
Q 019324          162 YLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQL  233 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~-~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------~~~~fD~  233 (343)
                      ..++.+||-+|||.-. ++..+++. |...|+.+|.++.-++.+++.    |..  .++..+-.+..      .++.+|+
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~--~~i~~~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--HVINSKTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe--EEEeCCCcCHHHHHHHHcCCCCcE
Confidence            3778999999997543 45555544 777889999999999988864    322  33332222111      1457999


Q ss_pred             EEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          234 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       234 V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      |+..-.-             ...++...++++|+|++++..
T Consensus       100 vid~~G~-------------~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         100 ALESTGS-------------PEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEECSCC-------------HHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEcCCc-------------HHHHHHHHhcccCceEEEEEe
Confidence            9864221             134588899999999998854

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.66  E-value=0.015  Score=45.98  Aligned_cols=94  Identities=20%  Similarity=0.147  Sum_probs=62.1

Q ss_pred             CCCCeEEEEccCccHH-HHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC------ccCCCccEE
Q 019324          163 LSSWSVLDIGTGNGLL-LQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT------KLERQFQLV  234 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~-~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~------~~~~~fD~V  234 (343)
                      .++.+||-+|||.... +..+++. |...|+++|.++.-++.+++.    +..  .++..+-...      .....+|+|
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~--~~i~~~~~~~~~~~~~~~~~g~d~v  104 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD--HVVDARRDPVKQVMELTRGRGVNVA  104 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS--EEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc--eeecCcccHHHHHHHhhCCCCceEE
Confidence            6788999999986544 4555554 777899999999988888863    221  2332221100      013468988


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +....-.             ..++...+.|++||++++...
T Consensus       105 id~~g~~-------------~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         105 MDFVGSQ-------------ATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EESSCCH-------------HHHHHGGGGEEEEEEEEECCC
T ss_pred             EEecCcc-------------hHHHHHHHHHhCCCEEEEEeC
Confidence            8743221             245889999999999998653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.59  E-value=0.0055  Score=52.13  Aligned_cols=47  Identities=17%  Similarity=0.056  Sum_probs=43.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHc
Q 019324          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~  210 (343)
                      .++..|||..||+|..+.+..+.|- +.+|+|+++..++.|++++...
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            6889999999999999999998874 9999999999999999998754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.12  Score=43.34  Aligned_cols=77  Identities=14%  Similarity=0.230  Sum_probs=61.1

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCC-ceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~-~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+.+ ++.++++|+.+...           
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            56889999999988   36777788887 8999999999999988877766543 68899999988531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+...
T Consensus        87 ~g~iD~lVnnAg~   99 (257)
T d1xg5a_          87 HSGVDICINNAGL   99 (257)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             cCCCCEEEecccc
Confidence            2579999987644

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.22  E-value=0.022  Score=44.38  Aligned_cols=93  Identities=18%  Similarity=0.217  Sum_probs=58.2

Q ss_pred             cCCCCeEEEEccCccH-HHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cCCCc
Q 019324          162 YLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LERQF  231 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~-~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~~~f  231 (343)
                      ..++.+||-.|||.-. +...+++. |. +|+++|.++.-++.+++    .|..   .... ..+..        ..+.+
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~----~Ga~---~~~~-~~~~~~~~~~~~~~~~~~   95 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVN-PLKEDAAKFMKEKVGGVH   95 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEEC-TTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh----cCcc---eecc-cccchhhhhcccccCCCc
Confidence            3678999999998654 44455555 55 89999999999888876    3332   2222 21111        12334


Q ss_pred             cEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCC
Q 019324          232 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  277 (343)
Q Consensus       232 D~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~  277 (343)
                      |+|++...           .   ..+....++|+|+|.+++.....
T Consensus        96 ~~v~~~~~-----------~---~~~~~a~~~l~~~G~i~~~g~~~  127 (168)
T d1rjwa2          96 AAVVTAVS-----------K---PAFQSAYNSIRRGGACVLVGLPP  127 (168)
T ss_dssp             EEEESSCC-----------H---HHHHHHHHHEEEEEEEEECCCCS
T ss_pred             eEEeecCC-----------H---HHHHHHHHHhccCCceEeccccc
Confidence            44433211           1   34588999999999999864433

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.06  E-value=0.058  Score=42.05  Aligned_cols=103  Identities=21%  Similarity=0.263  Sum_probs=63.1

Q ss_pred             eEEEEccCc-c-HHHHHHHhcCCC-cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcccccc
Q 019324          167 SVLDIGTGN-G-LLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  243 (343)
Q Consensus       167 ~VLDiGcG~-G-~~~~~la~~g~~-~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i  243 (343)
                      +|+=||||. | .++..|.+.|+. +|+|+|.++..++.+++.-      .+.....+.... .....|+|+..-..   
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~------~~~~~~~~~~~~-~~~~~dlIila~p~---   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG------IIDEGTTSIAKV-EDFSPDFVMLSSPV---   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT------SCSEEESCGGGG-GGTCCSEEEECSCH---
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh------cchhhhhhhhhh-hccccccccccCCc---
Confidence            588899985 3 345566666653 8999999999999988741      122222222211 22457888874332   


Q ss_pred             ccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHHHHHh
Q 019324          244 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  288 (343)
Q Consensus       244 ~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~  288 (343)
                             .....++.++...++++.+++-.  ...+....+.+..
T Consensus        73 -------~~~~~vl~~l~~~~~~~~ii~d~--~s~k~~~~~~~~~  108 (171)
T d2g5ca2          73 -------RTFREIAKKLSYILSEDATVTDQ--GSVKGKLVYDLEN  108 (171)
T ss_dssp             -------HHHHHHHHHHHHHSCTTCEEEEC--CSCCTHHHHHHHH
T ss_pred             -------hhhhhhhhhhhcccccccccccc--ccccHHHHHHHHH
Confidence                   34556778999999988655433  3333444444443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.01  E-value=0.0048  Score=49.05  Aligned_cols=88  Identities=16%  Similarity=0.134  Sum_probs=59.0

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEE
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLV  234 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V  234 (343)
                      ..++.+||-.|.  |.|.++..+++. |+ +|++++-++.-.+.+++    .|.+.+  +  |..+..    ....+|+|
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~~--i--~~~~~~~~~~~~~g~D~v   95 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEEA--A--TYAEVPERAKAWGGLDLV   95 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSEE--E--EGGGHHHHHHHTTSEEEE
T ss_pred             CCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----ccccee--e--ehhhhhhhhhcccccccc
Confidence            367889999884  346777777776 65 89999999988877775    343322  1  222211    24679998


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +.... .              .+....++|+|+|++++.
T Consensus        96 ~d~~G-~--------------~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          96 LEVRG-K--------------EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EECSC-T--------------THHHHHTTEEEEEEEEEC
T ss_pred             ccccc-h--------------hHHHHHHHHhcCCcEEEE
Confidence            86211 1              136778999999999874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.039  Score=43.47  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=62.3

Q ss_pred             cCCCCeEEEEccC--ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCC
Q 019324          162 YLSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  229 (343)
Q Consensus       162 ~~~~~~VLDiGcG--~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~  229 (343)
                      +.++.+||-.|+|  .|.++..+++. |+ +|++++.|+.-.+.+++.    |.+  .++  |..+..         -..
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l----Ga~--~vi--~~~~~d~~~~v~~~t~g~   96 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW--QVI--NYREEDLVERLKEITGGK   96 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--EEE--ETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc----CCe--EEE--ECCCCCHHHHHHHHhCCC
Confidence            3678899998665  56778888877 65 899999999999988863    332  222  222221         145


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEe
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  274 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~  274 (343)
                      .+|+|+....-+              .+.....+|+++|++++..
T Consensus        97 g~d~v~d~~g~~--------------~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          97 KVRVVYDSVGRD--------------TWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             CEEEEEECSCGG--------------GHHHHHHTEEEEEEEEECC
T ss_pred             CeEEEEeCccHH--------------HHHHHHHHHhcCCeeeecc
Confidence            789988743322              2378889999999987743

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.00  E-value=0.072  Score=41.67  Aligned_cols=94  Identities=16%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEcc-CCCCc-------cCCC
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLDTK-------LERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D-~~~~~-------~~~~  230 (343)
                      +..++.+||-.|||. |.++..+++. |+..|+++|.++.-.+.+++.    |.+  .++... -.+..       ..+.
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~--~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT--ECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc--EEEeCCchhhHHHHHHHHHcCCC
Confidence            347889999999873 3445555554 777999999999999888864    322  122111 11110       1457


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +|+|+..-.-.             ..++.+..++++||.+++.
T Consensus        99 ~D~vid~~G~~-------------~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          99 VDYSFECIGNV-------------KVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             BSEEEECSCCH-------------HHHHHHHHTBCTTTCEEEE
T ss_pred             CcEeeecCCCH-------------HHHHHHHHhhcCCceeEEE
Confidence            99999743211             3457888999999777654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.016  Score=45.56  Aligned_cols=94  Identities=16%  Similarity=0.251  Sum_probs=61.6

Q ss_pred             ccCCCCeEEEEccCc-cHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEE
Q 019324          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLV  234 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~-G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V  234 (343)
                      +..++.+||-+|||. |.++..+++. |+ +++++|.++.-.+.+++.    |..  .++  |..+..    ..+.+|++
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----Gad--~~i--~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD--EVV--NSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEE--ETTCHHHHHTTTTCEEEE
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----CCc--EEE--ECchhhHHHHhcCCCcee
Confidence            347789999999974 5666677765 65 788999999888877753    322  222  222211    13579998


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      +..-.-..             .++...++|+++|++++....
T Consensus        98 id~~g~~~-------------~~~~~~~~l~~~G~iv~~G~~  126 (168)
T d1uufa2          98 LNTVAAPH-------------NLDDFTTLLKRDGTMTLVGAP  126 (168)
T ss_dssp             EECCSSCC-------------CHHHHHTTEEEEEEEEECCCC
T ss_pred             eeeeecch-------------hHHHHHHHHhcCCEEEEeccC
Confidence            86422111             137788999999999986543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.82  E-value=0.069  Score=41.44  Aligned_cols=86  Identities=14%  Similarity=0.181  Sum_probs=56.1

Q ss_pred             eEEEEccC--ccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECccccccc
Q 019324          167 SVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG  244 (343)
Q Consensus       167 ~VLDiGcG--~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~l~~i~  244 (343)
                      +|.=||+|  -+.++..|.+.|+ +|+++|.++..++.+++.    +.  +.....+..   .-...|+|+..-..    
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~----~~--~~~~~~~~~---~~~~~DiIilavp~----   67 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----QL--VDEAGQDLS---LLQTAKIIFLCTPI----   67 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TS--CSEEESCGG---GGTTCSEEEECSCH----
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh----hc--cceeeeecc---cccccccccccCcH----
Confidence            57778887  3345667777787 899999999988887653    21  112222222   12467988863322    


Q ss_pred             cCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          245 LHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                            .....+++++...|+++-+++-
T Consensus        68 ------~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          68 ------QLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             ------HHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ------hhhhhhhhhhhhhcccccceee
Confidence                  3456778999999888876543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.78  E-value=0.0059  Score=48.88  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCC---CccCCCccEEEE
Q 019324          163 LSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD---TKLERQFQLVMD  236 (343)
Q Consensus       163 ~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~---~~~~~~fD~V~~  236 (343)
                      .++.+||--|+  |.|.++..+++. |+ +|+++--++.-.+.+++.    |.+.+--...+..+   ..-.+.+|+|+.
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~gvD~vid  104 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDKQRWAAAVD  104 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT----TCSEEEECC---------CCSCCEEEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhccCcCEEEE
Confidence            45778999885  566788888876 65 899999999988888763    33221111111111   112468999987


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      .-.-              ..+....++|+|||++++....
T Consensus       105 ~vgg--------------~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         105 PVGG--------------RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CSTT--------------TTHHHHHHTEEEEEEEEECSCC
T ss_pred             cCCc--------------hhHHHHHHHhCCCceEEEeecc
Confidence            5321              1348899999999999986543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.69  E-value=0.1  Score=41.13  Aligned_cols=45  Identities=20%  Similarity=0.213  Sum_probs=35.7

Q ss_pred             cCCCCeEEEEccCccH-HHHHHHhc-CCCcEEEEeCChHHHHHHHHH
Q 019324          162 YLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~-~~~~la~~-g~~~v~gvD~s~~~i~~a~~~  206 (343)
                      .+++.+||-+|||... ++..+++. |+.+|+++|.++.-++.|++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            3778999999998654 44444544 767999999999999999975

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.65  E-value=0.17  Score=42.12  Aligned_cols=76  Identities=12%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++.+|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++++|+.+...           -
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45788888898777   34666667786 899999999999988888877663 78999999988531           3


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        86 g~iDilvnnag~   97 (251)
T d2c07a1          86 KNVDILVNNAGI   97 (251)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceeeeecccc
Confidence            689999987644

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.64  E-value=0.064  Score=47.66  Aligned_cols=77  Identities=14%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             CCCeEEEEccCccHHHHHHHhc-C-------CCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEE
Q 019324          164 SSWSVLDIGTGNGLLLQELSKQ-G-------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  235 (343)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g-------~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~  235 (343)
                      ++.+|+|+|+|+|.++..++.. .       ...++-+|.|+...+.-++++..  ..++.++ .++...+  ...-+|+
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~~~i~w~-~~~~~~~--~~~g~ii  153 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--IRNIHWH-DSFEDVP--EGPAVIL  153 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--CSSEEEE-SSGGGSC--CSSEEEE
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--cccceec-cChhhcc--cCCeEEE
Confidence            4568999999999998776553 1       12589999999988877776653  2355543 3333322  2346899


Q ss_pred             ECcccccccc
Q 019324          236 DKGTLDAIGL  245 (343)
Q Consensus       236 ~~~~l~~i~~  245 (343)
                      +|..+|++++
T Consensus       154 aNE~fDAlPv  163 (365)
T d1zkda1         154 ANEYFDVLPI  163 (365)
T ss_dssp             EESSGGGSCC
T ss_pred             ecccCccccc
Confidence            9999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.61  E-value=0.11  Score=40.93  Aligned_cols=96  Identities=17%  Similarity=0.066  Sum_probs=59.2

Q ss_pred             ccCCCCeEEEEccCccH-HHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cCCC
Q 019324          161 KYLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~-~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~~~  230 (343)
                      +..++.+||-+|||... ++..+++. |+..|+++|.++.-++.+++.    |..  .++...-.+..        ..+.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~--~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT--ECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCc--EEEcCCCchhHHHHHHHHhcCCC
Confidence            34789999999998654 44445554 777899999999999999863    322  22211111110        1356


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccC-CCcEEEEEec
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVA-PGGLLVITSC  275 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lk-pgG~lii~~~  275 (343)
                      +|+|+......             ..+......++ ++|.+++...
T Consensus        98 ~d~vid~~g~~-------------~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          98 VDYAVECAGRI-------------ETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             BSEEEECSCCH-------------HHHHHHHHTBCTTTCEEEECCC
T ss_pred             CcEEEEcCCCc-------------hHHHHHHHHHHHhcCceEEEEE
Confidence            89988643211             23355555554 5688888543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.94  E-value=0.088  Score=41.58  Aligned_cols=92  Identities=15%  Similarity=0.208  Sum_probs=62.3

Q ss_pred             ccCCCCeEEEEccC--ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-------cCCC
Q 019324          161 KYLSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG--~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-------~~~~  230 (343)
                      ++.++.+||-.|++  .|..+..+++. |+ +|++++-++..++.+++.    |.+  ..+..+-.+..       ....
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~----Ga~--~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI----GFD--AAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS--EEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhh----hhh--hhcccccccHHHHHHHHhhcCC
Confidence            34678999988875  45677788777 65 999999999888777763    322  22222212111       1456


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +|+|+..-.-              ..++...++|+|+|.+++.
T Consensus        99 vd~v~D~vG~--------------~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          99 YDCYFDNVGG--------------EFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEEEESSCH--------------HHHHHHGGGEEEEEEEEEC
T ss_pred             CceeEEecCc--------------hhhhhhhhhccCCCeEEee
Confidence            9999874221              2458999999999999985

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.91  E-value=0.017  Score=45.52  Aligned_cols=98  Identities=13%  Similarity=0.186  Sum_probs=63.1

Q ss_pred             CCCCeEEEEccCccH-HHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-cCCCccEEEECcc
Q 019324          163 LSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~-~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-~~~~fD~V~~~~~  239 (343)
                      .++.+|+-||+|+-. .+...+.. |. +|+.+|.++..++..+....    .++++...+-.... .-...|+|+....
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~l~~~~~~aDivI~aal  104 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG----SRVELLYSNSAEIETAVAEADLLIGAVL  104 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc----ccceeehhhhhhHHHhhccCcEEEEeee
Confidence            468899999999754 45555554 65 99999999999988887654    24555544432221 1246899997533


Q ss_pred             ccccccCCCChhhHHHHHHHHhhccCCCcEEEE
Q 019324          240 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  272 (343)
Q Consensus       240 l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii  272 (343)
                      +.-    ...+.   .+-+++.+.+|||.+++=
T Consensus       105 ipG----~~aP~---lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         105 VPG----RRAPI---LVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             CTT----SSCCC---CBCHHHHTTSCTTCEEEE
T ss_pred             cCC----cccCe---eecHHHHhhcCCCcEEEE
Confidence            211    11111   123789999999987653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.80  E-value=0.051  Score=42.88  Aligned_cols=89  Identities=16%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             cCCCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---------cCC
Q 019324          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  229 (343)
Q Consensus       162 ~~~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---------~~~  229 (343)
                      ..++.+||-.|.  |.|.++..+++. |+ ++++++-++.-.+.+++    .|...  .+  |..+..         ...
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~Ga~~--vi--~~~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVEY--VG--DSRSVDFADEILELTDGY   93 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCSE--EE--ETTCSTHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc----ccccc--cc--cCCccCHHHHHHHHhCCC
Confidence            366889998773  466777777776 65 88888888877777764    34322  22  222221         135


Q ss_pred             CccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          230 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .+|+|++.-.-              ..++.+.++|+++|+++..
T Consensus        94 g~d~v~d~~g~--------------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          94 GVDVVLNSLAG--------------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CEEEEEECCCT--------------HHHHHHHHTEEEEEEEEEC
T ss_pred             CEEEEEecccc--------------hHHHHHHHHhcCCCEEEEE
Confidence            79999974221              2347788999999999885

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.17  Score=42.08  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      ..++++|--|++.|   .++..+++.|+ +|+.+|.++..++...+.+...+ .++.++.+|+.+...           -
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            55788999999988   46778888897 89999999999998888887776 489999999998631           3


Q ss_pred             CCccEEEECcccc
Q 019324          229 RQFQLVMDKGTLD  241 (343)
Q Consensus       229 ~~fD~V~~~~~l~  241 (343)
                      +..|+++.+..+.
T Consensus        83 g~idilinnag~~   95 (244)
T d1yb1a_          83 GDVSILVNNAGVV   95 (244)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCceeEeecccc
Confidence            6799999876543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.56  E-value=0.21  Score=38.92  Aligned_cols=95  Identities=16%  Similarity=0.098  Sum_probs=58.3

Q ss_pred             ccCCCCeEEEEccCccH-HHHHHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEE-ccCCCCc-------cCCC
Q 019324          161 KYLSSWSVLDIGTGNGL-LLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV-DDVLDTK-------LERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~-~~~~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~-~D~~~~~-------~~~~  230 (343)
                      +.+++.+||-+|||.+. +...++. .|...|+++|.++.-.+.+++.    |..  .++. .+-.+..       ..+.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~~G   98 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT--ECVNPQDYKKPIQEVLTEMSNGG   98 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe--eEEecCCchhHHHHHHHHHhcCC
Confidence            34788999999997544 3333333 3667999999999999988864    221  1221 1211211       1457


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEEe
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS  274 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~~  274 (343)
                      +|+|+......             ..++.....++++ |.+++..
T Consensus        99 ~D~vid~~G~~-------------~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          99 VDFSFEVIGRL-------------DTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             BSEEEECSCCH-------------HHHHHHHHHBCTTTCEEEECS
T ss_pred             CCEEEecCCch-------------hHHHHHHHHHhcCCcceEEec
Confidence            99999753322             2236677778776 5555543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.35  E-value=0.21  Score=36.98  Aligned_cols=85  Identities=14%  Similarity=0.093  Sum_probs=54.8

Q ss_pred             eEEEEccCccHHHHHHHh----cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEEC
Q 019324          167 SVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  237 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la~----~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~  237 (343)
                      +|+=+|+  |.++..+++    .|. .|+.+|.++..++.+++..      ++.++.+|..+...     -...|.+++.
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh------hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            5677776  556555554    465 8999999999998876532      56789999987642     2568888863


Q ss_pred             ccccccccCCCChhhHHHHHHHHhhccCCCcEE
Q 019324          238 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLL  270 (343)
Q Consensus       238 ~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~l  270 (343)
                      ..-          .....+...+.+.+.+..++
T Consensus        73 t~~----------d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          73 TGK----------EEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             CSC----------HHHHHHHHHHHHHTTCCCEE
T ss_pred             CCc----------HHHHHHHHHHHHHcCCceEE
Confidence            211          12223445566677777443

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.24  E-value=0.12  Score=45.51  Aligned_cols=50  Identities=16%  Similarity=0.283  Sum_probs=36.7

Q ss_pred             cCCCccEEEECccccccccCC-----------------CC---------hhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          227 LERQFQLVMDKGTLDAIGLHP-----------------DG---------PLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       227 ~~~~fD~V~~~~~l~~i~~~~-----------------~~---------~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      ++++.+++++...++++.--|                 ..         ..+...+|+.=.+-|+|||+++++...
T Consensus       136 P~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g  211 (359)
T d1m6ex_         136 PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             CCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            357899999998888874211                 11         235567888889999999999996543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.24  Score=41.30  Aligned_cols=76  Identities=14%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|.+.|.   ++..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++++|+.+...           -
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            567889988887763   5667777787 899999999999988888877763 78899999988531           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        87 g~iDilvnnAG~   98 (255)
T d1fmca_          87 GKVDILVNNAGG   98 (255)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEeeeCCcC
Confidence            589999987654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.05  E-value=0.25  Score=41.43  Aligned_cols=75  Identities=13%  Similarity=0.159  Sum_probs=57.5

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|-.|++.|.   ++..|++.|+ +|+.+|.++..++.+.+.+...+  ++.++.+|+.+...           -
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            568899999988873   5667778887 89999999998888777664433  68889999987531           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        81 g~iD~lVnnAG~   92 (268)
T d2bgka1          81 GKLDIMFGNVGV   92 (268)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcceecccccc
Confidence            579999987644

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.61  E-value=0.15  Score=40.39  Aligned_cols=87  Identities=13%  Similarity=0.133  Sum_probs=57.1

Q ss_pred             CeEEEEc--cCccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cCCCccEE
Q 019324          166 WSVLDIG--TGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LERQFQLV  234 (343)
Q Consensus       166 ~~VLDiG--cG~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~~~fD~V  234 (343)
                      .+||-.|  .|.|.++..+++. |+..|+++.-++.....+.+.   .|.+  .++  |..+..        .+..+|+|
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~gad--~vi--~~~~~~~~~~~~~~~~~GvDvv  104 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGFD--AAV--NYKTGNVAEQLREACPGGVDVY  104 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCCS--EEE--ETTSSCHHHHHHHHCTTCEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccce--EEe--eccchhHHHHHHHHhccCceEE
Confidence            6799877  4788999999986 776788888776655544432   2322  122  222221        14569999


Q ss_pred             EECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          235 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       235 ~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      +..-.           .   ..++...++|+++|+++..
T Consensus       105 ~D~vG-----------g---~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         105 FDNVG-----------G---DISNTVISQMNENSHIILC  129 (187)
T ss_dssp             EESSC-----------H---HHHHHHHTTEEEEEEEEEC
T ss_pred             EecCC-----------c---hhHHHHhhhccccccEEEe
Confidence            86421           1   2458899999999999874

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.6  Score=39.01  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             CCeEE-EEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CC
Q 019324          165 SWSVL-DIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       165 ~~~VL-DiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      +++|. -=|++.|.   ++..|++.+...|+.++.++..++.+.+.+...+. ++.++.+|+.+...           -+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            45664 44655553   34556665334899999999999988888877763 78999999988631           25


Q ss_pred             CccEEEECccccccccCCCC-hhhH-----------HHHHHHHhhccCCCcEEEEEec
Q 019324          230 QFQLVMDKGTLDAIGLHPDG-PLKR-----------IMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       230 ~fD~V~~~~~l~~i~~~~~~-~~~~-----------~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      ..|+++.|..+......... ..+.           ..+.+.+...|+++|.++..+.
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            89999998755322111111 1111           2456777888899999877643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.20  E-value=0.52  Score=39.37  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=73.5

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCC-hHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s-~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|--|++.|.   ++..|+++|+ +|+.+|.+ +..++.+.+.+...+. ++.++++|+.+...           
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            568899999998873   6777888887 79999887 5666767666666664 78999999988531           


Q ss_pred             CCCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEE
Q 019324          228 ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~  273 (343)
                      .+..|+++.+....... ++.......           ..+.+.+...|+.+|..++.
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i  151 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM  151 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence            25789998875432221 111111121           24456777888877776664

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.05  E-value=0.52  Score=36.36  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=56.6

Q ss_pred             ccCCCCeEEEEccCccHHHH-HHHh-cCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc--------cCCC
Q 019324          161 KYLSSWSVLDIGTGNGLLLQ-ELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LERQ  230 (343)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~-~la~-~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~--------~~~~  230 (343)
                      +.+++.+||-+|||.+..+. .++. .+...|+++|.++.-++.+++    .|.+  .++...-.+..        ....
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GAd--~~in~~~~~~~~~~~~~~~~~~G   98 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT--DFVNPNDHSEPISQVLSKMTNGG   98 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC--EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH----cCCc--EEEcCCCcchhHHHHHHhhccCC
Confidence            34788999999999865433 3333 366689999999998888886    3322  22221111110        1356


Q ss_pred             ccEEEECccccccccCCCChhhHHHHHHHHhhccCCC-cEEEEE
Q 019324          231 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVIT  273 (343)
Q Consensus       231 fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~Lkpg-G~lii~  273 (343)
                      +|+|+..-.-.             ..+..+.+++++| |++++.
T Consensus        99 ~d~vid~~G~~-------------~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2          99 VDFSLECVGNV-------------GVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             BSEEEECSCCH-------------HHHHHHHHTBCTTTCEEEEC
T ss_pred             cceeeeecCCH-------------HHHHHHHHHhhCCCcceeEE
Confidence            89998743221             2346666776665 555544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.49  Score=39.51  Aligned_cols=78  Identities=14%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|-.|++.|   .++..|+++|+ +|+.++.++..++.+.+.........+.+...|..+...           .
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            45889999999988   46777888887 899999999999888776554433467888888776421           2


Q ss_pred             CCccEEEECcccc
Q 019324          229 RQFQLVMDKGTLD  241 (343)
Q Consensus       229 ~~fD~V~~~~~l~  241 (343)
                      +..|+++.+....
T Consensus        91 g~~~~li~nag~~  103 (269)
T d1xu9a_          91 GGLDMLILNHITN  103 (269)
T ss_dssp             TSCSEEEECCCCC
T ss_pred             CCccccccccccc
Confidence            5788888876543

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=91.92  E-value=1.5  Score=37.09  Aligned_cols=108  Identities=9%  Similarity=0.030  Sum_probs=74.9

Q ss_pred             CCeEEEEccCccHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC---CceEEEEccCCCCcc---------CCCcc
Q 019324          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKL---------ERQFQ  232 (343)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~---~~i~~~~~D~~~~~~---------~~~fD  232 (343)
                      ...|+.+|||-=.-...+...+...++=+|+ |.+++.-++.+...+.   .+..++..|+.+...         ....-
T Consensus        90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt  168 (297)
T d2uyoa1          90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART  168 (297)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred             CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence            3457779999877666653222226777774 7777777777766553   256788888876321         23455


Q ss_pred             EEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCC
Q 019324          233 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  278 (343)
Q Consensus       233 ~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~  278 (343)
                      ++++-+++.++.     ......+++.+.++..||+.+++...+..
T Consensus       169 l~i~EGvl~YL~-----~~~~~~ll~~i~~~~~~GS~l~~d~~~~~  209 (297)
T d2uyoa1         169 AWLAEGLLMYLP-----ATAQDGLFTEIGGLSAVGSRIAVETSPLH  209 (297)
T ss_dssp             EEEECSCGGGSC-----HHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             EEEEccccccCC-----HHHHHHHHHHHHHhCCCCCEEEEEecccc
Confidence            777788888773     46778899999999999999999765544

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.73  E-value=0.1  Score=40.83  Aligned_cols=93  Identities=23%  Similarity=0.274  Sum_probs=61.7

Q ss_pred             CCCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCC----ccCCCccEEEE
Q 019324          164 SSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVMD  236 (343)
Q Consensus       164 ~~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~----~~~~~fD~V~~  236 (343)
                      ++.+||--|+  |.|.++..+++. |+ +|+++.-++.-.+.+++.    |.+.+ +...|....    ...+.+|+|+.
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad~v-i~~~~~~~~~~~~~~~~gvd~vid   96 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASEV-ISREDVYDGTLKALSKQQWQGAVD   96 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSEE-EEHHHHCSSCCCSSCCCCEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----cccce-EeccchhchhhhcccCCCceEEEe
Confidence            3557887774  567788888887 76 899999998888888764    33222 111221111    12467999886


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecC
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  276 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~  276 (343)
                      .-.           .   ..+.+..++|+|+|++++....
T Consensus        97 ~vg-----------g---~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          97 PVG-----------G---KQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             SCC-----------T---HHHHHHHTTEEEEEEEEECCCS
T ss_pred             cCc-----------H---HHHHHHHHHhccCceEEEeecc
Confidence            421           1   2458899999999999886443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.67  E-value=0.55  Score=38.64  Aligned_cols=73  Identities=16%  Similarity=0.219  Sum_probs=54.9

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+.    .++.++.+|+.+...           -
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG----ANGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence            35778888888777   35667778887 89999999988887766543    367889999987531           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        77 g~iDilVnnAg~   88 (243)
T d1q7ba_          77 GEVDILVNNAGI   88 (243)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCcceehhhhhh
Confidence            689999987543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.61  E-value=0.53  Score=39.03  Aligned_cols=106  Identities=15%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+   + .+..++.+|+.+...           -
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~   78 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---G-ERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---C-TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence            45788998888777   45667777887 8999999998887766544   3 367888999987531           2


Q ss_pred             CCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccC-CCcEEEEE
Q 019324          229 RQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVA-PGGLLVIT  273 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~Lk-pgG~lii~  273 (343)
                      +..|+++.+....... +......+.           ..+.+.+...|+ .+|.++..
T Consensus        79 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~i  136 (253)
T d1hxha_          79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINM  136 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecc
Confidence            5789999886543221 111122222           133455666665 47887765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.52  E-value=0.37  Score=40.18  Aligned_cols=76  Identities=16%  Similarity=0.304  Sum_probs=60.9

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------------c
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------L  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------------~  227 (343)
                      .+++++|-.|+..|   .++..|++.|+ +|+.++.++..++.+.+.+...+. ++.++.+|+.+..            .
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHh
Confidence            56889999999877   46777788887 899999999998888888877774 7889999998763            1


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      .+..|+++.+...
T Consensus        82 ~g~idilinnag~   94 (258)
T d1ae1a_          82 DGKLNILVNNAGV   94 (258)
T ss_dssp             TSCCCEEEECCCC
T ss_pred             CCCcEEEeccccc
Confidence            3578898876543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.40  E-value=0.34  Score=40.42  Aligned_cols=75  Identities=16%  Similarity=0.265  Sum_probs=60.2

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|.+.|.   ++..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++.+|+.+...           -
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            457899999988773   6777888887 899999999999999888877764 78899999987531           2


Q ss_pred             CCccEEEECcc
Q 019324          229 RQFQLVMDKGT  239 (343)
Q Consensus       229 ~~fD~V~~~~~  239 (343)
                      +..|+++.+..
T Consensus        81 g~iDilVnnaG   91 (260)
T d1zema1          81 GKIDFLFNNAG   91 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCeehhhhc
Confidence            57999998754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.82  E-value=0.55  Score=38.90  Aligned_cols=74  Identities=15%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             CCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCC
Q 019324          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ  230 (343)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~  230 (343)
                      ++.+|--|++.|.   ++..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++++|+.+...           -+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            3456777877663   5667778887 899999999999988888877764 78999999988631           268


Q ss_pred             ccEEEECccc
Q 019324          231 FQLVMDKGTL  240 (343)
Q Consensus       231 fD~V~~~~~l  240 (343)
                      .|+++.+..+
T Consensus        80 iDilVnnAG~   89 (257)
T d2rhca1          80 VDVLVNNAGR   89 (257)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEecccc
Confidence            9999987543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.70  E-value=0.55  Score=38.91  Aligned_cols=71  Identities=24%  Similarity=0.334  Sum_probs=55.5

Q ss_pred             eEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCcc
Q 019324          167 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ  232 (343)
Q Consensus       167 ~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~fD  232 (343)
                      .+|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++.+|+.+...           -+..|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            3577788766   35667778887 899999999999988888877764 78899999988631           26899


Q ss_pred             EEEECcc
Q 019324          233 LVMDKGT  239 (343)
Q Consensus       233 ~V~~~~~  239 (343)
                      +++.+..
T Consensus        81 ilVnnAG   87 (255)
T d1gega_          81 VIVNNAG   87 (255)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9998754

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.63  E-value=0.96  Score=37.01  Aligned_cols=108  Identities=21%  Similarity=0.190  Sum_probs=70.2

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|-.|++.|   .++..|++.|+ +|+.++.+...++...+   ..+ .++.++++|+.+...           -
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVA---ALE-AEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---TCC-SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HcC-CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            46889999999887   36777788887 89999999887665544   334 378899999987531           1


Q ss_pred             CCccEEEECccccccc-cCCCChhhH-----------HHHHHHHhhccCCCcEEEEEec
Q 019324          229 RQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       229 ~~fD~V~~~~~l~~i~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~lii~~~  275 (343)
                      +..|+++.+....... +........           ..+.+.+...++.++.+++.+.
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss  136 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS  136 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence            5799999876443221 111111121           2334556677777777766544

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.48  E-value=0.28  Score=38.85  Aligned_cols=74  Identities=11%  Similarity=0.077  Sum_probs=55.1

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc----cCCCccEEE
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM  235 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~----~~~~fD~V~  235 (343)
                      .++++||-.|++.|   .++..+++.|+ +|+.++.++..++.+.+.+....  ++.+...|+.+..    .-+..|+++
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHHHhcCcCeee
Confidence            67899999998776   35667788887 89999999988888777665432  4556777776643    135789999


Q ss_pred             ECcc
Q 019324          236 DKGT  239 (343)
Q Consensus       236 ~~~~  239 (343)
                      .+..
T Consensus        98 n~Ag  101 (191)
T d1luaa1          98 TAGA  101 (191)
T ss_dssp             ECCC
T ss_pred             ecCc
Confidence            8754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.43  E-value=0.37  Score=35.49  Aligned_cols=60  Identities=20%  Similarity=0.318  Sum_probs=40.3

Q ss_pred             eEEEEccCccHHHHHHH----hcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEE
Q 019324          167 SVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD  236 (343)
Q Consensus       167 ~VLDiGcG~G~~~~~la----~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~  236 (343)
                      +++-+|+  |.++..++    +.|. .|+.+|.++..++.++.       .....+.+|..+...     -...|.+++
T Consensus         2 ~~iIiG~--G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~-------~~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           2 QFAVIGL--GRFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS-------YATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTT-------TCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHH-------hCCcceeeecccchhhhccCCccccEEEE
Confidence            3555566  55555444    4465 89999999999988763       234678899887642     245777665

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.34  E-value=1  Score=37.08  Aligned_cols=70  Identities=16%  Similarity=0.281  Sum_probs=52.0

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++...+.+++.       +..++++|+.+...           -
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~   74 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI-------GGAFFQVDLEDERERVRFVEEAAYAL   74 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH-------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-------CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence            45889999998777   35667778887 899999998876655432       45678899988531           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      ++.|+++.+..+
T Consensus        75 G~iDiLVnnAG~   86 (248)
T d2d1ya1          75 GRVDVLVNNAAI   86 (248)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeEEEeCcC
Confidence            689999987543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.19  E-value=0.53  Score=39.12  Aligned_cols=76  Identities=16%  Similarity=0.283  Sum_probs=60.4

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------------c
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------L  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------------~  227 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++.+|+.+..            +
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            56889999998877   35777788887 899999999999988888777663 7889999998752            1


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      ....|+++.+...
T Consensus        84 ~~~idilvnnAG~   96 (259)
T d2ae2a_          84 HGKLNILVNNAGI   96 (259)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCceEEEECCce
Confidence            2478999987543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.58  Score=38.52  Aligned_cols=72  Identities=19%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCCcc
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~fD  232 (343)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+..     .++..++.|+.+...       -++.|
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence            56889999999887   46777888887 8999999988877666543     367889999987531       26899


Q ss_pred             EEEECccc
Q 019324          233 LVMDKGTL  240 (343)
Q Consensus       233 ~V~~~~~l  240 (343)
                      +++.+...
T Consensus        79 ilVnnAg~   86 (244)
T d1pr9a_          79 LLVNNAAV   86 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99987644

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=89.62  E-value=0.67  Score=39.04  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=57.9

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHH-HcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-RDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~-~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+. ..+ .++.++.+|+.+...           
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g-~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC-CceEEEEecccChHHHHHHhhhhhhh
Confidence            67899999999887   46777778887 89999999988777665443 334 478899999987531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      .+..|+++.+...
T Consensus       101 ~g~iDilvnnAg~  113 (294)
T d1w6ua_         101 AGHPNIVINNAAG  113 (294)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             ccccchhhhhhhh
Confidence            3689999987543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=89.52  E-value=0.65  Score=36.48  Aligned_cols=95  Identities=11%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             cCCCCeEEEEccC---ccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEc---cCCCCc--------
Q 019324          162 YLSSWSVLDIGTG---NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLDTK--------  226 (343)
Q Consensus       162 ~~~~~~VLDiGcG---~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~---D~~~~~--------  226 (343)
                      +.++.+||-+.+|   .|..+..+++. |+ +|+++--++...+...+.+...|.+.  ++..   |..+..        
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~--vi~~~~~~~~~~~~~v~~~~~  102 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEWIK  102 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccE--EEeccccchhHHHHHHHHHHh
Confidence            3667788887333   45677777776 76 78877655555555555555556432  2222   222111        


Q ss_pred             -cCCCccEEEECccccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          227 -LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       227 -~~~~fD~V~~~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                       ....+|+|+..     +.      .   ..+....++|+|+|+++..
T Consensus       103 ~~g~~vdvv~D~-----vg------~---~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2         103 QSGGEAKLALNC-----VG------G---KSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             HHTCCEEEEEES-----SC------H---HHHHHHHHTSCTTCEEEEC
T ss_pred             hccCCceEEEEC-----CC------c---chhhhhhhhhcCCcEEEEE
Confidence             13568888863     21      1   2347778999999999875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.16  E-value=0.5  Score=39.59  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=60.1

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--CceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~~i~~~~~D~~~~~~----------  227 (343)
                      .+++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+.  .++.++++|+.+...          
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            45788999898877   46777888887 899999999999998888876654  368999999987531          


Q ss_pred             -CCCccEEEECcc
Q 019324          228 -ERQFQLVMDKGT  239 (343)
Q Consensus       228 -~~~fD~V~~~~~  239 (343)
                       -+..|+++.+..
T Consensus        82 ~~g~iDilvnnAG   94 (272)
T d1xkqa_          82 QFGKIDVLVNNAG   94 (272)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCceEEEeCCc
Confidence             257899998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.91  E-value=0.91  Score=33.10  Aligned_cols=94  Identities=11%  Similarity=-0.029  Sum_probs=61.3

Q ss_pred             cCccHHHHHHHhc--CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEECcccccccc
Q 019324          173 TGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKGTLDAIGL  245 (343)
Q Consensus       173 cG~G~~~~~la~~--g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~~~~l~~i~~  245 (343)
                      ||-|..+..+++.  +. .++.+|.++..++.++.       .++.++.+|..+...     -...+.+++...      
T Consensus         6 ~G~g~~g~~l~~~L~~~-~i~vi~~d~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~------   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGS-EVFVLAEDENVRKKVLR-------SGANFVHGDPTRVSDLEKANVRGARAVIVNLE------   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGG-GEEEEESCTTHHHHHHH-------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCS------
T ss_pred             ECCCHHHHHHHHHHcCC-CCEEEEcchHHHHHHHh-------cCccccccccCCHHHHHHhhhhcCcEEEEecc------
Confidence            5667788888876  33 79999999998887654       367899999887541     246777775221      


Q ss_pred             CCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHHH
Q 019324          246 HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  284 (343)
Q Consensus       246 ~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~  284 (343)
                        +  ......+-...+.+.|...++.........+.+.
T Consensus        72 --~--d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~  106 (129)
T d2fy8a1          72 --S--DSETIHCILGIRKIDESVRIIAEAERYENIEQLR  106 (129)
T ss_dssp             --S--HHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHH
T ss_pred             --c--hhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHH
Confidence              1  1122233455667889888777655554444444

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.45  E-value=0.64  Score=38.65  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc------------c
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------L  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~------------~  227 (343)
                      .+++++|--|++.|.   ++..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++.+|+.+..            +
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            568899999988874   6777888887 899999999999888887777663 7999999998753            1


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      .+..|+++.+...
T Consensus        84 ~g~idilvnnAG~   96 (259)
T d1xq1a_          84 GGKLDILINNLGA   96 (259)
T ss_dssp             TTCCSEEEEECCC
T ss_pred             CCCcccccccccc
Confidence            3578999987543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=88.38  E-value=2  Score=34.96  Aligned_cols=74  Identities=18%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             CCCCeEEEEccCc--c---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc-----------
Q 019324          163 LSSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------  226 (343)
Q Consensus       163 ~~~~~VLDiGcG~--G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~-----------  226 (343)
                      .++++||--|++.  |   .++..|++.|+ +|+.++.++...+.+.+.....+  +..+...|..+..           
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcC--CcceeecccchHHHHHHHHHHhhh
Confidence            4588999998865  5   36778888897 79999999888888877666654  4556677765532           


Q ss_pred             cCCCccEEEECcc
Q 019324          227 LERQFQLVMDKGT  239 (343)
Q Consensus       227 ~~~~fD~V~~~~~  239 (343)
                      ..+..|+++.+..
T Consensus        80 ~~~~~d~~v~~a~   92 (258)
T d1qsga_          80 VWPKFDGFVHSIG   92 (258)
T ss_dssp             TCSSEEEEEECCC
T ss_pred             cccccceEEEeec
Confidence            1367888887653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.19  E-value=0.64  Score=38.93  Aligned_cols=76  Identities=21%  Similarity=0.285  Sum_probs=60.0

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--CceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~~i~~~~~D~~~~~~----------  227 (343)
                      .+++++|--|++.|.   ++..|++.|+ +|+.+|.++..++.+.+.+...+.  .++.++++|+.+...          
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            357889988988773   5677788887 899999999999988888777654  368999999988631          


Q ss_pred             -CCCccEEEECcc
Q 019324          228 -ERQFQLVMDKGT  239 (343)
Q Consensus       228 -~~~fD~V~~~~~  239 (343)
                       -+..|+++.+..
T Consensus        81 ~~G~iDilVnnAG   93 (274)
T d1xhla_          81 KFGKIDILVNNAG   93 (274)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCceEEEeecc
Confidence             257899998754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.64  E-value=0.72  Score=38.33  Aligned_cols=76  Identities=12%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC--CceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~--~~i~~~~~D~~~~~~----------  227 (343)
                      .+++.+|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+.  .++.++++|+.+...          
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            45778888888877   35677778887 899999999999988887776654  268999999987631          


Q ss_pred             -CCCccEEEECcc
Q 019324          228 -ERQFQLVMDKGT  239 (343)
Q Consensus       228 -~~~fD~V~~~~~  239 (343)
                       -+..|+++.+..
T Consensus        82 ~~g~iDilvnnAG   94 (264)
T d1spxa_          82 KFGKLDILVNNAG   94 (264)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCCCEeecccc
Confidence             257999998754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.58  E-value=0.98  Score=36.98  Aligned_cols=71  Identities=17%  Similarity=0.205  Sum_probs=53.5

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-------CCCcc
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ  232 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-------~~~fD  232 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+..     .++..+++|+.+...       -++.|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVD   76 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence            45789999998877   35677778887 8999999987776655433     367889999987531       26899


Q ss_pred             EEEECcc
Q 019324          233 LVMDKGT  239 (343)
Q Consensus       233 ~V~~~~~  239 (343)
                      +++.+..
T Consensus        77 ilVnnAg   83 (242)
T d1cyda_          77 LLVNNAA   83 (242)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9998754

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=87.46  E-value=0.61  Score=41.48  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=42.2

Q ss_pred             cCCCCeEEEEccCccHHHHHHHhc--C-CCcEEEEeCChHHHHHHHHHHHHcCC
Q 019324          162 YLSSWSVLDIGTGNGLLLQELSKQ--G-FSDLTGVDYSEDAINLAQSLANRDGF  212 (343)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g-~~~v~gvD~s~~~i~~a~~~~~~~~~  212 (343)
                      ..++..++|+|+-.|..+..++..  + ..+|+++|.++...+..++++..+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            467889999999999888776653  2 34899999999999999999887653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=87.36  E-value=0.29  Score=38.67  Aligned_cols=44  Identities=23%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             CCCCeEEEEccCccHH-HHHHHhc-CCCcEEEEeCChHHHHHHHHHH
Q 019324          163 LSSWSVLDIGTGNGLL-LQELSKQ-GFSDLTGVDYSEDAINLAQSLA  207 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~~-~~~la~~-g~~~v~gvD~s~~~i~~a~~~~  207 (343)
                      .++.+||-||+|+-.+ +...+.. |+ .|+.+|.++..++..+...
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTT
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhh
Confidence            4688999999997554 4455544 65 9999999999999888753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=87.08  E-value=2.1  Score=32.67  Aligned_cols=97  Identities=11%  Similarity=0.099  Sum_probs=57.6

Q ss_pred             CeEEEEccCccH--HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEcc--CCCCcc--CCCccEEEECc
Q 019324          166 WSVLDIGTGNGL--LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDD--VLDTKL--ERQFQLVMDKG  238 (343)
Q Consensus       166 ~~VLDiGcG~G~--~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D--~~~~~~--~~~fD~V~~~~  238 (343)
                      ++|--||+|.-.  ++..|++.|+ +|+.+|.++.-++..++.-.... .+........  ......  -...|+|+..-
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            578889998764  4556677786 89999999988887765421100 0011111111  111000  14678888632


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEE
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~  273 (343)
                      .          ......+++++...|+++-.+++.
T Consensus        81 ~----------~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          81 P----------AIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             C----------GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             c----------hhHHHHHHHHhhhccCCCCEEEEe
Confidence            1          134456789999999999866543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.04  E-value=0.92  Score=37.41  Aligned_cols=76  Identities=16%  Similarity=0.128  Sum_probs=57.3

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHH-HHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~-~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+ +..+ .++.++.+|+.+...           
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG-VETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45789999998877   36777888887 8999999988877666544 4445 378899999987531           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        81 ~g~iDiLVnnAG~   93 (251)
T d1vl8a_          81 FGKLDTVVNAAGI   93 (251)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2579999987643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.73  E-value=1.2  Score=36.78  Aligned_cols=77  Identities=21%  Similarity=0.248  Sum_probs=59.0

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCC-CceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~-~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|--|++.|.   ++..|++.|+ +|+.+|.++..++.+.+.....+. .++.++++|+.+...           
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            357789999998873   6778888897 899999999988887776554432 368889999988631           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+..+
T Consensus        81 ~G~iDiLVnnAG~   93 (258)
T d1iy8a_          81 FGRIDGFFNNAGI   93 (258)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCCEEEECCcc
Confidence            2679999987643

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.91  E-value=1.2  Score=36.62  Aligned_cols=73  Identities=11%  Similarity=0.138  Sum_probs=56.4

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+.    .++.++++|+.+...           -
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh----CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            56889999999887   46677888887 89999999988777666543    368899999988631           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        79 g~idilinnAG~   90 (244)
T d1nffa_          79 GGLHVLVNNAGI   90 (244)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            578999987644

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=85.35  E-value=0.83  Score=37.66  Aligned_cols=75  Identities=13%  Similarity=0.124  Sum_probs=57.1

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...  .++.++.+|+.+...           -
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45788888888777   35677778887 8999999998888877765432  378999999988631           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        81 G~iDiLVnnAg~   92 (251)
T d1zk4a1          81 GPVSTLVNNAGI   92 (251)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            679999987644

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.12  E-value=3.4  Score=33.82  Aligned_cols=74  Identities=15%  Similarity=0.046  Sum_probs=52.8

Q ss_pred             CCCCeEEEEccC----cc-HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTG----NG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG----~G-~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      .+++++|-.|++    -| ..+..|++.|+ +|+.++.++...+.+++.....+  .+.+...|+.....          
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCC--ceeEeeecccchhhHHHHHHHHHH
Confidence            568899999963    33 35677777887 89999999876666666554433  56778888876531          


Q ss_pred             -CCCccEEEECcc
Q 019324          228 -ERQFQLVMDKGT  239 (343)
Q Consensus       228 -~~~fD~V~~~~~  239 (343)
                       -+..|+++.+..
T Consensus        80 ~~g~id~lV~nag   92 (274)
T d2pd4a1          80 DLGSLDFIVHSVA   92 (274)
T ss_dssp             HTSCEEEEEECCC
T ss_pred             HcCCCCeEEeecc
Confidence             367898887654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.81  E-value=2.8  Score=34.12  Aligned_cols=72  Identities=17%  Similarity=0.091  Sum_probs=50.4

Q ss_pred             eEEEEccCcc---HHHHHHHhcCCCcEEEEeC-ChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------CCCc
Q 019324          167 SVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF  231 (343)
Q Consensus       167 ~VLDiGcG~G---~~~~~la~~g~~~v~gvD~-s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~~~f  231 (343)
                      .||--|++.|   .++..|++.|+ +|+..|. ++..++.+.+.+...+. ++.++.+|+.+...           -+..
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4555566655   24556677787 7877665 67778888777776663 78899999988631           2689


Q ss_pred             cEEEECccc
Q 019324          232 QLVMDKGTL  240 (343)
Q Consensus       232 D~V~~~~~l  240 (343)
                      |+++.+...
T Consensus        81 DiLVnnAg~   89 (244)
T d1edoa_          81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             Ccccccccc
Confidence            999987643

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.68  E-value=1.4  Score=36.26  Aligned_cols=72  Identities=15%  Similarity=0.158  Sum_probs=55.4

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+..     .++.++++|+.+...           -
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence            46889999998877   35677778887 8999999998887766543     368899999987531           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        78 g~iDilVnnAG~   89 (250)
T d1ydea1          78 GRLDCVVNNAGH   89 (250)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            579999987653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.40  E-value=2.5  Score=35.61  Aligned_cols=77  Identities=10%  Similarity=0.132  Sum_probs=57.7

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC----CCceEEEEccCCCCcc--------
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTKL--------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~----~~~i~~~~~D~~~~~~--------  227 (343)
                      .+++++|--|++.|.   ++..|++.|+ +|+.+|.++..++.+.+.+....    -.++.++.+|+.+...        
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            678999999988873   5667778887 89999999988877766554321    1378899999998631        


Q ss_pred             ---CCCccEEEECccc
Q 019324          228 ---ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ---~~~fD~V~~~~~l  240 (343)
                         -+..|+++.+...
T Consensus        89 ~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          89 LDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCeEEEEeeccc
Confidence               2579999987643

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.79  E-value=0.34  Score=38.03  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=57.4

Q ss_pred             CCeEEEEcc--CccHHHHHHHhc-CCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCc---cCCCccEEEECc
Q 019324          165 SWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKG  238 (343)
Q Consensus       165 ~~~VLDiGc--G~G~~~~~la~~-g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~---~~~~fD~V~~~~  238 (343)
                      +.+||-.|.  |.|.++..+++. |+ +|+++.-++...+.+++.    |.+  .++.-+-.+..   ....+|.|+.  
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~l----Gad--~vi~~~~~~~~~~l~~~~~~~vvD--  102 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSL----GAS--RVLPRDEFAESRPLEKQVWAGAID--  102 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TEE--EEEEGGGSSSCCSSCCCCEEEEEE--
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhh----ccc--cccccccHHHHHHHHhhcCCeeEE--
Confidence            457776653  466778888877 66 899999999988888753    221  22222211111   2355787764  


Q ss_pred             cccccccCCCChhhHHHHHHHHhhccCCCcEEEEEec
Q 019324          239 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  275 (343)
Q Consensus       239 ~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~  275 (343)
                         .+.      .   ..+....+.|+++|++++...
T Consensus       103 ---~Vg------g---~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         103 ---TVG------D---KVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             ---SSC------H---HHHHHHHHTEEEEEEEEECCC
T ss_pred             ---Ecc------h---HHHHHHHHHhccccceEeecc
Confidence               331      1   346889999999999998643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.50  E-value=1.7  Score=35.67  Aligned_cols=75  Identities=16%  Similarity=0.177  Sum_probs=56.3

Q ss_pred             CCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcC-CCceEEEEccCCCCcc-----------CC
Q 019324          165 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL-----------ER  229 (343)
Q Consensus       165 ~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~-~~~i~~~~~D~~~~~~-----------~~  229 (343)
                      ++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+.... -.++.++.+|+.+...           -+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            678888898877   35667777887 89999999988887776654332 1378999999988631           25


Q ss_pred             CccEEEECccc
Q 019324          230 QFQLVMDKGTL  240 (343)
Q Consensus       230 ~fD~V~~~~~l  240 (343)
                      ..|+++.+...
T Consensus        82 ~iDilVnnAg~   92 (254)
T d2gdza1          82 RLDILVNNAGV   92 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcCeecccccc
Confidence            79999987654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.21  E-value=1.4  Score=36.00  Aligned_cols=71  Identities=24%  Similarity=0.276  Sum_probs=53.5

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|.   ++..|++.|+ +|+.+|.++..++.+.+..      ++.++.+|+.+...           -
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~   75 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV------GAHPVVMDVADPASVERGFAEALAHL   75 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc------CCeEEEEecCCHHHHHHHHHHHHHhc
Confidence            357889999998873   5667778887 8999999998877766532      56788999987631           1


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        76 g~iDilVnnAG~   87 (242)
T d1ulsa_          76 GRLDGVVHYAGI   87 (242)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCceEEEECCcc
Confidence            579999987543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=82.65  E-value=1.6  Score=30.28  Aligned_cols=69  Identities=16%  Similarity=0.297  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcc-Ccc--HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCccCCCccEEEECcc
Q 019324          163 LSSWSVLDIGT-GNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (343)
Q Consensus       163 ~~~~~VLDiGc-G~G--~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~~~~fD~V~~~~~  239 (343)
                      ...++|.=||. |+|  .++..|.++|+ .|+|.|......-  + .+...   .+.+..+.-... . ...|+|+....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~--~-~L~~~---Gi~v~~g~~~~~-i-~~~d~vV~S~A   76 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVT--Q-RLAQA---GAKIYIGHAEEH-I-EGASVVVVSSA   76 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHH--H-HHHHT---TCEEEESCCGGG-G-TTCSEEEECTT
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhh--h-HHHHC---CCeEEECCcccc-C-CCCCEEEECCC
Confidence            44677888864 344  55677788898 8999998743222  1 22223   345555544332 2 35788887654


Q ss_pred             c
Q 019324          240 L  240 (343)
Q Consensus       240 l  240 (343)
                      +
T Consensus        77 I   77 (96)
T d1p3da1          77 I   77 (96)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=82.60  E-value=1.7  Score=35.86  Aligned_cols=73  Identities=14%  Similarity=0.097  Sum_probs=55.2

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|.+.|   .++..|++.|+ +|+.+|.++..++...+.+   + .++.++++|+.+...           -
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---G-DAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---G-GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            46789999999888   46777888887 8999999987776555433   3 378999999987531           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        78 g~iDilVnnAg~   89 (254)
T d1hdca_          78 GSVDGLVNNAGI   89 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCccEEEecCcc
Confidence            579999887544

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.55  E-value=1.6  Score=35.89  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=71.9

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEE-EeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTG-VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~g-vD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      ..++++|-.|.+.|   .++..|++.|+ +|+. .+-++..++.+.+.+...+. ++.++.+|+.+...           
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHH
Confidence            55789998887766   56677777887 5665 56788888888888888774 88999999987531           


Q ss_pred             CCCccEEEECccccccc-cCCCChhh-----------HHHHHHHHhhccCCCcEEEEE
Q 019324          228 ERQFQLVMDKGTLDAIG-LHPDGPLK-----------RIMYWDSVSKLVAPGGLLVIT  273 (343)
Q Consensus       228 ~~~fD~V~~~~~l~~i~-~~~~~~~~-----------~~~~l~~~~~~LkpgG~lii~  273 (343)
                      -+..|+++.+....... +.......           ...+.+.+...|+.+|.+++.
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence            25799999876543221 01111111           124456667777777666553

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.36  E-value=0.91  Score=37.56  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHH-HHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~-~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|--|.+.|   .++..|++.|+ +|+.+|.++..++.+.+.. +..+ .++.++++|+.+...           
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT-CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC-CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            56789999998777   35677778887 8999999987665554433 4445 378899999988631           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+...
T Consensus        85 ~g~iDilVnnAg~   97 (260)
T d1h5qa_          85 LGPISGLIANAGV   97 (260)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             hCCCcEecccccc
Confidence            3689999987643

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=81.90  E-value=1.2  Score=36.72  Aligned_cols=76  Identities=13%  Similarity=0.237  Sum_probs=54.7

Q ss_pred             CCCCeEEEEccCccH---HHHHHHhcCCCcEEEEeCC-hHHHHHHHHHHH-HcCCCceEEEEccCCCCcc----------
Q 019324          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLAN-RDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~v~gvD~s-~~~i~~a~~~~~-~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      .+++++|--|++.|.   .+..|++.|+ +|+.++.+ +..++.+.+... ..+ .++.++.+|+.+...          
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHG-VKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHT-SCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            357788888888773   5667888887 89999997 556666655443 334 378899999998631          


Q ss_pred             -CCCccEEEECccc
Q 019324          228 -ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -~~~fD~V~~~~~l  240 (343)
                       -+..|+++.+...
T Consensus        80 ~~G~iDiLVnnAG~   93 (260)
T d1x1ta1          80 QMGRIDILVNNAGI   93 (260)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HhCCCcEEEeeccc
Confidence             2679999987643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.37  E-value=1.6  Score=35.92  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=55.4

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+   + .++.++.+|+.+...           -
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~-~~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G-PAACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            35788999998877   45777778887 8999999988777665543   4 478899999988631           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+...
T Consensus        78 g~iDilVnnAg~   89 (256)
T d1k2wa_          78 GSIDILVNNAAL   89 (256)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCccEEEeeccc
Confidence            579999987654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=81.14  E-value=2.5  Score=34.29  Aligned_cols=73  Identities=12%  Similarity=0.176  Sum_probs=55.3

Q ss_pred             eEEEEccCccH---HHHHHHhcCCC------cEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc----------
Q 019324          167 SVLDIGTGNGL---LLQELSKQGFS------DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (343)
Q Consensus       167 ~VLDiGcG~G~---~~~~la~~g~~------~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~----------  227 (343)
                      .||--|++.|.   ++..|++.|+.      .|+.++.++..++.+.+.+...+. ++.++.+|+.+...          
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHH
Confidence            35667887773   56677777863      299999999999988887777663 78899999988631          


Q ss_pred             -CCCccEEEECccc
Q 019324          228 -ERQFQLVMDKGTL  240 (343)
Q Consensus       228 -~~~fD~V~~~~~l  240 (343)
                       -+..|+++.+..+
T Consensus        82 ~~g~iDilvnnAg~   95 (240)
T d2bd0a1          82 RYGHIDCLVNNAGV   95 (240)
T ss_dssp             HTSCCSEEEECCCC
T ss_pred             HcCCcceeeccccc
Confidence             2679999987644

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=81.09  E-value=2.4  Score=35.22  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=54.7

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------C
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------~  228 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++...+..   + .++.++.+|+.+...           -
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~---~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDH---G-DNVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C-CCeeEEecccccHHHHHHHHHHHHHHh
Confidence            35789999998777   35677778887 8999999988777665543   2 378899999988631           2


Q ss_pred             CCccEEEECccc
Q 019324          229 RQFQLVMDKGTL  240 (343)
Q Consensus       229 ~~fD~V~~~~~l  240 (343)
                      +..|+++.+..+
T Consensus        78 g~idilvnnAG~   89 (276)
T d1bdba_          78 GKIDTLIPNAGI   89 (276)
T ss_dssp             SCCCEEECCCCC
T ss_pred             CCcccccccccc
Confidence            578999977543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=80.59  E-value=4.1  Score=30.15  Aligned_cols=102  Identities=9%  Similarity=0.025  Sum_probs=59.3

Q ss_pred             CeEEEEccCccHHHHHH----HhcCCCcEEEEeCChHHHHHHHHHHHHcCCCceEEEEccCCCCcc-----CCCccEEEE
Q 019324          166 WSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD  236 (343)
Q Consensus       166 ~~VLDiGcG~G~~~~~l----a~~g~~~v~gvD~s~~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~V~~  236 (343)
                      .+|+=+|+|  .++..+    .+.|. .++.+|.++.......+....   .++.++.+|..+...     -...|.|++
T Consensus         4 nHiII~G~g--~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~---~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGHS--ILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhc---CCcEEEEccCcchHHHHHhccccCCEEEE
Confidence            467777775  444444    44465 899999998654433333222   368899999988642     256788876


Q ss_pred             CccccccccCCCChhhHHHHHHHHhhccCCCcEEEEEecCCChHHHH
Q 019324          237 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  283 (343)
Q Consensus       237 ~~~l~~i~~~~~~~~~~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~  283 (343)
                      ...        +  ...........+-+.|...++.........+.+
T Consensus        78 ~~~--------~--d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l  114 (153)
T d1id1a_          78 LSD--------N--DADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKI  114 (153)
T ss_dssp             CSS--------C--HHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHH
T ss_pred             ccc--------c--HHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHH
Confidence            321        1  111223344556667887777665544444333

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=80.06  E-value=2.2  Score=35.14  Aligned_cols=76  Identities=14%  Similarity=0.081  Sum_probs=56.6

Q ss_pred             CCCCeEEEEccCcc---HHHHHHHhcCCCcEEEEeCCh-HHHHHHHHHHHHcCCCceEEEEccCCCCcc-----------
Q 019324          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (343)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~v~gvD~s~-~~i~~a~~~~~~~~~~~i~~~~~D~~~~~~-----------  227 (343)
                      .+++++|--|++.|   .++..|++.|+ +|+.++.+. ..++.+.+.+...+. ++.++++|+.+...           
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45788888888877   35677788887 899999874 566766666666663 78899999987631           


Q ss_pred             CCCccEEEECccc
Q 019324          228 ERQFQLVMDKGTL  240 (343)
Q Consensus       228 ~~~fD~V~~~~~l  240 (343)
                      -+..|+++.+...
T Consensus        83 ~G~iDiLVnnAG~   95 (261)
T d1geea_          83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEeecccee
Confidence            2578999987643