Citrus Sinensis ID: 019388
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 341 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XIA9 | 665 | Long chain acyl-CoA synth | yes | no | 0.947 | 0.485 | 0.645 | 1e-126 | |
| Q9T0A0 | 666 | Long chain acyl-CoA synth | no | no | 0.958 | 0.490 | 0.530 | 1e-102 | |
| Q9C7W4 | 665 | Long chain acyl-CoA synth | no | no | 0.953 | 0.488 | 0.538 | 1e-102 | |
| Q9T009 | 666 | Long chain acyl-CoA synth | no | no | 0.953 | 0.487 | 0.539 | 1e-100 | |
| O22898 | 660 | Long chain acyl-CoA synth | no | no | 0.958 | 0.495 | 0.478 | 3e-89 | |
| Q8LKS5 | 700 | Long chain acyl-CoA synth | no | no | 0.800 | 0.39 | 0.383 | 3e-48 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.780 | 0.379 | 0.395 | 1e-46 | |
| Q9JID6 | 698 | Long-chain-fatty-acid--Co | yes | no | 0.788 | 0.385 | 0.348 | 2e-43 | |
| P41216 | 699 | Long-chain-fatty-acid--Co | yes | no | 0.788 | 0.384 | 0.337 | 3e-41 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | yes | no | 0.765 | 0.391 | 0.36 | 4e-41 |
| >sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 209/324 (64%), Positives = 252/324 (77%), Gaps = 1/324 (0%)
Query: 9 VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
VEE RPA PS GPVYRC YAKDGLL+ P ++SPWQFF ++ K+ PN QMLG R +
Sbjct: 11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70
Query: 69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG CGIYG+NCPEWIIAMEAC SQ IT
Sbjct: 71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
YVPLYD+LG NAVEFIINHAEVS+ FVQE + SILSC C LKTIVSF VSS+QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190
Query: 189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
+EA+ VS FSW EF +G LD LP K+KT+I TIMYTSGTTGEPKGV+L N AI
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250
Query: 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
+VLS+D+M VT + C D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310
Query: 308 IQELKPTMFSGVPRVYDRIYTGTI 331
+Q LKPT+F GVPRVYD++Y G +
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIM 334
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/328 (53%), Positives = 236/328 (71%), Gaps = 1/328 (0%)
Query: 3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
+ Y +VEE + +DG+PS GPVYR I+AKDG + G++S W F S ++ PNN ML
Sbjct: 5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64
Query: 63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
G R++ DGK G YVW TYQEVYD ++ G+++RS GV +CGIYG+N PEWII+MEAC
Sbjct: 65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
N+ + VPLYDTLGA+AVEFII+H+EVSI FV+E KI + P Y+KT+VSF
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184
Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
VS QK+EAE G+ ++W+EFL+LG +LP KKK++I TIMYTSGTTG+PKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
N++IV + V ++ + + +D Y S+LPLAHI+D++IE I G +IGFWRGDV
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTG 329
+ L+ED+ ELKPT+F VPRV DR+Y+G
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSG 332
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/327 (53%), Positives = 237/327 (72%), Gaps = 2/327 (0%)
Query: 5 YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
Y V+VE+ + DG PS GPVYR IYAKDG E P L S W F S ++ PNN MLG
Sbjct: 6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65
Query: 64 GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
R++ DGK G YVW TY+EV++ I+ G+++R+ GV GD+CGIYG+N PEWII+MEACN
Sbjct: 66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125
Query: 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
+ + VPLYDTLGA A+EFII HAEVS+AF +ENKI +L P+ YLK IVSF V
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185
Query: 184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
+++Q+ EAE ++ +SW++FL+LG ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245
Query: 243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
++I+ + V ++ + + +D Y S+LPLAHI+D++IE CI++ SIGFWRGDV+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305
Query: 303 YLMEDIQELKPTMFSGVPRVYDRIYTG 329
L+EDI LKPT+F VPRV +RIYTG
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTG 332
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/326 (53%), Positives = 231/326 (70%), Gaps = 1/326 (0%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
+ +VE A+ A DG PS GPVYR +A++G G++S W F + ++ PNN+MLG
Sbjct: 7 FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++S+GK G YVW TY+EVYD I+ G+++RS G+ G++CGIYG NC EWII+MEACN+
Sbjct: 67 REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
+ VPLYDTLGA AVEFII+HAEVSIAFV+E KIP + P Y+KT+VSF V
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
QK+EAE+LG+ SW+EFL+LG ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246
Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
+IV V SE+D Y S+LPLAH++D+ IE I G SIGFWRGDV+
Sbjct: 247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306
Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTG 329
L+ED+ ELKP++F VPRV DR+YTG
Sbjct: 307 LIEDLGELKPSIFCAVPRVLDRVYTG 332
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/328 (47%), Positives = 215/328 (65%), Gaps = 1/328 (0%)
Query: 3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
+++ KVEE DGKPS GPVYR + ++ G + + + W F S ++ P+N ML
Sbjct: 2 KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61
Query: 63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
G R++ D KVGPY+W TY+EVY+ ++ GSA+R+ G PG R GIYG NCP+WIIAMEAC
Sbjct: 62 GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121
Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
+ + VPLYDTLG+ AV++I+ HAE+ FVQ+ KI +L +C LK IVSF N
Sbjct: 122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181
Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
VS +A E+GV +SW +FL +G E P K NI TIMYTSGT+G+PKGVVLT
Sbjct: 182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
+QA+ V+ +D + +D Y SFLPLAHI D++ E + KG S+G++ G++
Sbjct: 242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTG 329
L +DIQELKPT +GVPRV++RI+ G
Sbjct: 302 NVLRDDIQELKPTYLAGVPRVFERIHEG 329
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)). Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 155/284 (54%), Gaps = 11/284 (3%)
Query: 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
F + + N+ LG R SDG +G Y W+TY E GS + GVN GD G+Y
Sbjct: 90 FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149
Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
N PEW++ AC + + VPLYDTLG +AV+F++NHA + F + +LS L
Sbjct: 150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209
Query: 169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
++ IV GV+ S+++ L G P K +I+TI Y
Sbjct: 210 EIP-SIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268
Query: 228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
TSGTTG PKGVVLT+ ++A V SV+ F + D Y S+LPLAHIY++ +
Sbjct: 269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321
Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
++ G ++GF++GDV LM+D L+PT+F VPR+Y+RIY G
Sbjct: 322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDG 365
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 149/273 (54%), Gaps = 7/273 (2%)
Query: 60 QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
+ LG R DG VG Y W+TY E A GS + G+ G GIY N PEW+I
Sbjct: 101 KYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVD 160
Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
AC+S + VPLYDTLG +AV+FI+NHA V F + S+LSCL +V
Sbjct: 161 HACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPSVRLVVVV 220
Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGV 238
+ S + GV S+ L G + + P K +++TI YTSGTTG PKGV
Sbjct: 221 GGLIESLPSLPSSS-GVKVVSYSVLLNQGRSNPQRFFPPKPDDVATICYTSGTTGTPKGV 279
Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
VLT+ ++A V D Y S+LPLAHIY++ + ++ G ++GF++
Sbjct: 280 VLTHANLIANVAGSSFS-----VKFFSSDVYISYLPLAHIYERANQILTVYFGVAVGFYQ 334
Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331
GD L++D+ L+PT+FS VPR+Y+RIY G I
Sbjct: 335 GDNMKLLDDLAALRPTVFSSVPRLYNRIYAGII 367
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 164/287 (57%), Gaps = 18/287 (6%)
Query: 58 NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRG--VNPGDRCGIYGSNCPEW 115
N LG RK PY WL+Y++V D + GSA+ +G +P GI+ N PEW
Sbjct: 105 NGPCLGSRKPDQ----PYEWLSYKQVEDLSECIGSALLQKGFQASPDQFIGIFAQNRPEW 160
Query: 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL--SCLPRCCLY 173
+I +AC + ++ VPLYDTLGA+A+ +I+N AE+S+ F + + IL S +
Sbjct: 161 VIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKARILLESVENKLTPG 220
Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTSGTT 232
LK IV + S ++ ++ GV S + LG + P P + +++ I +TSGTT
Sbjct: 221 LKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRKPKPPEPDDLAVICFTSGTT 280
Query: 233 GEPKGVVLTNQAIVAE----VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI 288
G PKG ++T++ +V++ V + ++ V+ D + SFLPLAH+Y+Q+++ +
Sbjct: 281 GNPKGAMITHKNVVSDCSAFVKATEKALVLNA-----SDIHISFLPLAHMYEQLLQCVML 335
Query: 289 HKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCT 335
G IGF++GD+R LM+D++ L+PT+F VPR+ +R++ Q
Sbjct: 336 CHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIFAQAN 382
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Cavia porcellus (taxid: 10141) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 162/293 (55%), Gaps = 24/293 (8%)
Query: 58 NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEW 115
N LG RK + PY W++Y+EV + A GS + +G P G++ N PEW
Sbjct: 106 NGPCLGSRKPNQ----PYEWISYKEVAELAECIGSGLIQKGFKPCSEQFIGLFSQNRPEW 161
Query: 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-----SCLPRC 170
+I + C S ++ VPLYDTLGA+A+ +I+N AE+S+ F + + +L + L C
Sbjct: 162 VIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKAKLLLEGVENKLTPC 221
Query: 171 CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTS 229
LK IV + S + ++ GV S + LG ++ P P + +++ I +TS
Sbjct: 222 ---LKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVKPKPPEPEDLAIICFTS 278
Query: 230 GTTGEPKGVVLTNQAIVAE----VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
GTTG PKG ++T+Q I+ + + + + F+ S +D SFLPLAH+++ ++E
Sbjct: 279 GTTGNPKGAMITHQNIINDCSGFIKATESAFI-----ASTDDVLISFLPLAHMFETVVEC 333
Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCTHKL 338
+ G IGF++GD+R LM+D++ L+PT+F VPR+ +R++ Q L
Sbjct: 334 VMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQANTSL 386
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 164/275 (59%), Gaps = 14/275 (5%)
Query: 58 NNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116
++ LG R++ +DGK G Y W++Y++ A GSA+ G+N GDR GI+ N PEW+
Sbjct: 67 DSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWV 126
Query: 117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT 176
++ A + ++ V LY TLGANA+E+++NH+E+S+ + + ILS +P +KT
Sbjct: 127 LSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS-MPGTT--IKT 183
Query: 177 IVSFANV-SSSQKKEAEELGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTT 232
IVS+ + ++ K + V + +F +LG + E+P + ++ T++YTSG+T
Sbjct: 184 IVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPE--DLCTLLYTSGST 241
Query: 233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
G PKGV+LT+ +V+EV + F G + ED + S+LPLAH +++ + + + G
Sbjct: 242 GNPKGVMLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYLPLAHSFERAVVSLMCYVGG 297
Query: 293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIY 327
IGF+ G + L DIQ L+PT G PRV+ R++
Sbjct: 298 QIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLH 332
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 341 | ||||||
| 224103487 | 658 | predicted protein [Populus trichocarpa] | 0.970 | 0.503 | 0.785 | 1e-157 | |
| 225428594 | 659 | PREDICTED: long chain acyl-CoA synthetas | 0.970 | 0.502 | 0.761 | 1e-153 | |
| 449455210 | 661 | PREDICTED: long chain acyl-CoA synthetas | 0.982 | 0.506 | 0.752 | 1e-150 | |
| 449474962 | 661 | PREDICTED: long chain acyl-CoA synthetas | 0.982 | 0.506 | 0.747 | 1e-148 | |
| 356544492 | 656 | PREDICTED: long chain acyl-CoA synthetas | 0.961 | 0.5 | 0.744 | 1e-146 | |
| 356523415 | 660 | PREDICTED: long chain acyl-CoA synthetas | 0.964 | 0.498 | 0.744 | 1e-146 | |
| 255556171 | 660 | acyl CoA synthetase, putative [Ricinus c | 0.964 | 0.498 | 0.744 | 1e-145 | |
| 356575070 | 660 | PREDICTED: long chain acyl-CoA synthetas | 0.964 | 0.498 | 0.741 | 1e-144 | |
| 356541119 | 656 | PREDICTED: long chain acyl-CoA synthetas | 0.956 | 0.496 | 0.740 | 1e-144 | |
| 115485907 | 661 | Os11g0558300 [Oryza sativa Japonica Grou | 0.964 | 0.497 | 0.659 | 1e-131 |
| >gi|224103487|ref|XP_002313075.1| predicted protein [Populus trichocarpa] gi|222849483|gb|EEE87030.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 260/331 (78%), Positives = 296/331 (89%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
+ VKVEE+RPA+DGKPS GPVYR IYAKDGL++ PAGLESPWQFF DSA + P N+MLG
Sbjct: 3 FIVKVEESRPASDGKPSAGPVYRSIYAKDGLMDLPAGLESPWQFFSDSALKNPENKMLGR 62
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R+V D KVGPYVWLTY+EVYD+A+R GSAMR RGVNPGDRCGIYGSNCPEWI AMEAC+S
Sbjct: 63 RQVIDSKVGPYVWLTYKEVYDSAMRMGSAMRRRGVNPGDRCGIYGSNCPEWITAMEACDS 122
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
QAITYVPLYDTLG NAVEFIINHAEVSIAFVQENK+ SILSCLP+C LKTIVSF +S
Sbjct: 123 QAITYVPLYDTLGPNAVEFIINHAEVSIAFVQENKLSSILSCLPKCSSNLKTIVSFGKIS 182
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
QKKEA+ELGVSCFSWEEF QLG+LDCELPPK KT++ TIMYTSGTTGEPKGV+LTN A
Sbjct: 183 DMQKKEADELGVSCFSWEEFPQLGSLDCELPPKHKTDVCTIMYTSGTTGEPKGVILTNGA 242
Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
+VAEVLSVDQ+ +T +V +EED+YFSFLPLAH+YDQ+IET+CI+KG SIGFW+GDVRYL
Sbjct: 243 LVAEVLSVDQLLFLTDRVAAEEDSYFSFLPLAHVYDQVIETYCIYKGASIGFWQGDVRYL 302
Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGTICQCT 335
MEDIQELKP++F GVPRVYDRIYTGT+ + +
Sbjct: 303 MEDIQELKPSIFCGVPRVYDRIYTGTLAKVS 333
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428594|ref|XP_002281151.1| PREDICTED: long chain acyl-CoA synthetase 2 [Vitis vinifera] gi|297741400|emb|CBI32531.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/331 (76%), Positives = 293/331 (88%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
YTVKV ++ PA + +PS GPVYRCIYA++GLLE P G+ESPW+FF DS +R P NQMLG
Sbjct: 4 YTVKVADSIPATEERPSAGPVYRCIYAENGLLEVPKGMESPWEFFSDSVERNPKNQMLGR 63
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++ + K GPYVWLTY+E YDAA+R GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS
Sbjct: 64 RQIINSKAGPYVWLTYREAYDAALRMGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 123
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
QAI YVPLYD+LGANAVEFIINHAEVSIAFVQE+KIP++L+CLP+C YLKTI+SF +S
Sbjct: 124 QAIPYVPLYDSLGANAVEFIINHAEVSIAFVQESKIPAMLTCLPKCTSYLKTIISFGKIS 183
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
SSQK+EAEELGVSCFSWEEF LG+LDCELPPK+KT+I TIMYTSGTTGEPKGVVL+N+A
Sbjct: 184 SSQKEEAEELGVSCFSWEEFALLGSLDCELPPKQKTDICTIMYTSGTTGEPKGVVLSNEA 243
Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
I+AEVLS DQ+ + T KV +EEDTYFSFLPLAH++DQI+ET+CI+KG SIGFW DVRYL
Sbjct: 244 IMAEVLSTDQLLLETDKVATEEDTYFSFLPLAHVFDQIMETYCIYKGSSIGFWGADVRYL 303
Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGTICQCT 335
MEDIQELKPT+F GVPRVY+RIY G I + +
Sbjct: 304 MEDIQELKPTIFCGVPRVYERIYGGAIAKIS 334
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455210|ref|XP_004145346.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/336 (75%), Positives = 288/336 (85%), Gaps = 1/336 (0%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
MS +YTV VE P + G+PS GPVYR IYAKDGLL+ P L+SPWQFF DS KR P N
Sbjct: 1 MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60
Query: 61 MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
MLG R+ + D K G YVWLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61 MLGRRQTNGDSKAGSYVWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120
Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180
Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
F NVSS KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240
Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCT 335
D+R+L++DIQELKPT+FSGVPRVYDRIY+G + + +
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVS 336
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449474962|ref|XP_004154333.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/336 (74%), Positives = 286/336 (85%), Gaps = 1/336 (0%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
MS +YTV VE P + G+PS GPVYR IYAKDGLL+ P L+SPWQFF DS KR P N
Sbjct: 1 MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60
Query: 61 MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
MLG R+ + D KV WLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61 MLGRRQTNGDSKVAAIRWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120
Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180
Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
F NVSS KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240
Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCT 335
D+R+L++DIQELKPT+FSGVPRVYDRIY+G + + +
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVS 336
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544492|ref|XP_003540684.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/329 (74%), Positives = 278/329 (84%), Gaps = 1/329 (0%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M E YTVKVEEARPA KPS GPVYRCIYAKD L P+ ESPW+FF D+ R P+N
Sbjct: 1 MPEVYTVKVEEARPATHEKPSAGPVYRCIYAKDALTVLPSHFESPWEFFRDTTTRCPSNP 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSR VNPGDRCGIYGSNCPEWIIAME
Sbjct: 61 MLGRRQKSDSKVGPYEWITYQEAYDAAIRMGSAMRSRDVNPGDRCGIYGSNCPEWIIAME 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ+NK PS+LSCL RC LKT+VSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDNKFPSVLSCLDRCS-SLKTVVSF 179
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
NVS++QKKEAEELG SCFSWEEFLQLG +D +LP K KTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQLGNMDLDLPLKNKTNICTIMYTSGTTGEPKGVII 239
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
N+A + +VLS+DQ+ +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
VR+LMEDIQ LKPT+F VPRVYDR+Y G
Sbjct: 300 VRFLMEDIQALKPTLFCAVPRVYDRVYAG 328
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523415|ref|XP_003530335.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/329 (74%), Positives = 279/329 (84%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M E YTVKVEE RPA D KPS GPVYR IYAKDGLLE P+ ESPW FF DS KR PNN+
Sbjct: 1 MPEVYTVKVEEGRPATDAKPSAGPVYRSIYAKDGLLEVPSDFESPWDFFRDSVKRNPNNK 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+ ++ KVG Y WLTYQ+VYDAA++ GSAMRSRGVNPGDRCGIYGSNCPEWII ME
Sbjct: 61 MLGRRQKTESKVGSYTWLTYQDVYDAALKMGSAMRSRGVNPGDRCGIYGSNCPEWIIVME 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNS A +YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPSILSCL +C LKTIVSF
Sbjct: 121 ACNSCAASYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSILSCLAQCSSNLKTIVSF 180
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+VS++QKKEAEE G SCFSW EFLQLG LD +LP KKK +I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEEHGASCFSWGEFLQLGCLDWDLPSKKKNDICTIMYTSGTTGDPKGVVI 240
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
N+A +AEVLSVD + ++T +V E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVVGEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 300
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
VR+L+ED+Q LKPT+F GVPRV+DRIY G
Sbjct: 301 VRFLLEDVQALKPTIFCGVPRVFDRIYAG 329
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556171|ref|XP_002519120.1| acyl CoA synthetase, putative [Ricinus communis] gi|223541783|gb|EEF43331.1| acyl CoA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/333 (74%), Positives = 285/333 (85%), Gaps = 4/333 (1%)
Query: 1 MSETYTVKVEEARPAA-DGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNN 59
MS Y VKVEE+RPAA DGKPS GPV+R IYAKDGLLE A L+SPWQF DSA + PNN
Sbjct: 1 MSMEYLVKVEESRPAASDGKPSAGPVFRSIYAKDGLLEVSAELDSPWQFLSDSALKNPNN 60
Query: 60 QMLGGRKVSDGKV-GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118
+MLG R V+D KV GPYVWLTY+EVY+ AIR GSAMRSRG+NPGDRCGIYGSNCPEWI A
Sbjct: 61 RMLGRRLVTDSKVAGPYVWLTYKEVYETAIRIGSAMRSRGLNPGDRCGIYGSNCPEWITA 120
Query: 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIV 178
MEAC S AIT+VPLYDTLG NAVEFI+NHAEVS+AFVQE+K+ SIL+CLP+C YLK+
Sbjct: 121 MEACKSHAITFVPLYDTLGPNAVEFIVNHAEVSLAFVQESKLSSILACLPKCSSYLKS-- 178
Query: 179 SFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
+F +VS+ QKKEAEELG SCFSWEEF QLG+LDCELP K K +I TIMYTSGTTGEPKGV
Sbjct: 179 NFGSVSAMQKKEAEELGASCFSWEEFCQLGSLDCELPAKHKGDICTIMYTSGTTGEPKGV 238
Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
+LTN AI+AEVLSVD + +T + +EED+YFSFLPLAH+YDQ+IET+CI KG SIGFWR
Sbjct: 239 LLTNGAIMAEVLSVDHLLFLTDRAATEEDSYFSFLPLAHVYDQVIETYCIQKGASIGFWR 298
Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331
GDVR+L+ED Q LKP++F GVPRVYDRIYTGT+
Sbjct: 299 GDVRFLLEDAQALKPSIFCGVPRVYDRIYTGTM 331
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575070|ref|XP_003555665.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/329 (74%), Positives = 280/329 (85%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M E YTVKVEE R A DGKPS GPVYR IYAKDGLLE P+ +SPW FF DS KR PNN
Sbjct: 1 MPEVYTVKVEEGRLATDGKPSVGPVYRSIYAKDGLLEVPSDFKSPWDFFRDSVKRNPNNN 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+ ++ K+G Y WLTYQ+VYDAA++ GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61 MLGRRQKTESKLGSYTWLTYQDVYDAAMKMGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNS A++YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPS+LSCL +C LKTIVSF
Sbjct: 121 ACNSCAVSYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSVLSCLAQCSSNLKTIVSF 180
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+VS++QKKEAE G SCFSW EFLQLG LD +LP KKKT+I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEGHGASCFSWGEFLQLGCLDWDLPSKKKTDICTIMYTSGTTGDPKGVVI 240
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
N+A +AEVLSVD + ++T +V E+D YFSFLPLAH+YDQI+ET+CI KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVAGEDDVYFSFLPLAHVYDQIMETYCISKGSSIGFWQGD 300
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
VR+L+EDIQELKPT+F GVPRV+DRIY G
Sbjct: 301 VRFLLEDIQELKPTIFCGVPRVFDRIYAG 329
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541119|ref|XP_003539030.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/327 (74%), Positives = 279/327 (85%), Gaps = 1/327 (0%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M E Y+VKVEEARPA KPS GPVYRCIYAKD L + P+ +SPWQFF D+ R P+N
Sbjct: 1 MPELYSVKVEEARPATHEKPSAGPVYRCIYAKDALTQLPSHFQSPWQFFRDTTTRCPSNP 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSRGVNPG RCGIYGSNCPEWIIAM+
Sbjct: 61 MLGRRQKSDSKVGPYQWITYQEAYDAAIRMGSAMRSRGVNPGYRCGIYGSNCPEWIIAMQ 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ++KIPS+LSCL R LKTIVSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDSKIPSVLSCLDRWS-SLKTIVSF 179
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
NVS++QKKEAEELG SCFSWEEFLQ+G +D +LPPKKKTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQMGNIDLDLPPKKKTNICTIMYTSGTTGEPKGVII 239
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
N+A + +VLS+DQ+ +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIY 327
V +LMEDI LKPT+F GVPRVYDR+Y
Sbjct: 300 VGFLMEDILALKPTLFCGVPRVYDRVY 326
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115485907|ref|NP_001068097.1| Os11g0558300 [Oryza sativa Japonica Group] gi|77551497|gb|ABA94294.1| AMP-binding enzyme family protein, expressed [Oryza sativa Japonica Group] gi|113645319|dbj|BAF28460.1| Os11g0558300 [Oryza sativa Japonica Group] gi|215766667|dbj|BAG98895.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616147|gb|EEE52279.1| hypothetical protein OsJ_34263 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 217/329 (65%), Positives = 268/329 (81%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M ETYTVKV EA PAA GKPS GPVYR IY+KDGL++ P + SPW FF + K+ P N+
Sbjct: 1 MEETYTVKVGEATPAAGGKPSAGPVYRSIYSKDGLMKLPEDILSPWDFFSGAVKQYPKNK 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG RKVSDGK G YVWLTY+EVY I+ GSA+RS V PG CGIYGSNCPEW++AM+
Sbjct: 61 MLGQRKVSDGKAGDYVWLTYEEVYQKVIKIGSAIRSLRVKPGGHCGIYGSNCPEWVMAMQ 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNSQ I YVPLYDTLGANAVEFI++HAE+SIAFVQE+KI S+LS + RC ++K IVSF
Sbjct: 121 ACNSQGICYVPLYDTLGANAVEFIMDHAEISIAFVQESKIQSVLSVVKRCRAHIKAIVSF 180
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+V+S K+EAE+LGVSCFSWEEF +G + ELP K+K +I TIMYTSGTTG+PKGV++
Sbjct: 181 GDVTSELKREAEQLGVSCFSWEEFSSMGKQNYELPKKQKDDICTIMYTSGTTGDPKGVII 240
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
TN+A++A V++ + + VT KV +E+D+YFS+LPLAHI+DQ+I +CI KG SIGFW+ D
Sbjct: 241 TNRALIAGVMTTEHLLKVTDKVVAEDDSYFSYLPLAHIFDQVIGNYCISKGASIGFWQAD 300
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
+RYLMED+Q +KPT+F GVPRVYDRIYTG
Sbjct: 301 IRYLMEDVQMMKPTVFCGVPRVYDRIYTG 329
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 341 | ||||||
| TAIR|locus:2010177 | 665 | LACS2 "long-chain acyl-CoA syn | 0.941 | 0.482 | 0.649 | 9.1e-116 | |
| TAIR|locus:2138141 | 666 | LACS4 "long-chain acyl-CoA syn | 0.953 | 0.487 | 0.533 | 3e-94 | |
| TAIR|locus:2014265 | 665 | LACS3 "long-chain acyl-CoA syn | 0.953 | 0.488 | 0.538 | 3.8e-94 | |
| TAIR|locus:2136148 | 666 | AT4G11030 [Arabidopsis thalian | 0.953 | 0.487 | 0.539 | 1e-93 | |
| TAIR|locus:2065195 | 660 | LACS1 "AT2G47240" [Arabidopsis | 0.958 | 0.495 | 0.478 | 8.2e-83 | |
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.771 | 0.375 | 0.415 | 2.6e-47 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.800 | 0.39 | 0.383 | 2.1e-46 | |
| WB|WBGene00022037 | 719 | acs-13 [Caenorhabditis elegans | 0.818 | 0.388 | 0.389 | 3.5e-45 | |
| ZFIN|ZDB-GENE-050809-115 | 697 | acsl1 "acyl-CoA synthetase lon | 0.803 | 0.393 | 0.356 | 1.8e-42 | |
| UNIPROTKB|Q0VCZ8 | 699 | ACSL1 "Acyl-CoA synthetase lon | 0.777 | 0.379 | 0.363 | 2.4e-42 |
| TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 209/322 (64%), Positives = 251/322 (77%)
Query: 9 VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
VEE RPA PS GPVYRC YAKDGLL+ P ++SPWQFF ++ K+ PN QMLG R +
Sbjct: 11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70
Query: 69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG CGIYG+NCPEWIIAMEAC SQ IT
Sbjct: 71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
YVPLYD+LG NAVEFIINHAEVS+ FVQE + SILSC C LKTIVSF VSS+QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190
Query: 189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
+EA+ VS FSW EF +G LD LP K+KT+I TIMYTSGTTGEPKGV+L N AI
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250
Query: 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
+VLS+D+M VT + C D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310
Query: 308 IQELKPTMFSGVPRVYDRIYTG 329
+Q LKPT+F GVPRVYD++Y G
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAG 332
|
|
| TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 174/326 (53%), Positives = 235/326 (72%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
Y +VEE + +DG+PS GPVYR I+AKDG + G++S W F S ++ PNN MLG
Sbjct: 7 YIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLGR 66
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++ DGK G YVW TYQEVYD ++ G+++RS GV +CGIYG+N PEWII+MEACN+
Sbjct: 67 REIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
+ VPLYDTLGA+AVEFII+H+EVSI FV+E KI + P Y+KT+VSF VS
Sbjct: 127 HGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
QK+EAE G+ ++W+EFL+LG +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246
Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
+IV + V ++ + + +D Y S+LPLAHI+D++IE I G +IGFWRGDV+
Sbjct: 247 SIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306
Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTG 329
L+ED+ ELKPT+F VPRV DR+Y+G
Sbjct: 307 LIEDLAELKPTIFCAVPRVLDRVYSG 332
|
|
| TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 176/327 (53%), Positives = 237/327 (72%)
Query: 5 YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
Y V+VE+ + DG PS GPVYR IYAKDG E P L S W F S ++ PNN MLG
Sbjct: 6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65
Query: 64 GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
R++ DGK G YVW TY+EV++ I+ G+++R+ GV GD+CGIYG+N PEWII+MEACN
Sbjct: 66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125
Query: 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
+ + VPLYDTLGA A+EFII HAEVS+AF +ENKI +L P+ YLK IVSF V
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185
Query: 184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
+++Q+ EAE ++ +SW++FL+LG ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245
Query: 243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
++I+ + V ++ + + +D Y S+LPLAHI+D++IE CI++ SIGFWRGDV+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305
Query: 303 YLMEDIQELKPTMFSGVPRVYDRIYTG 329
L+EDI LKPT+F VPRV +RIYTG
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTG 332
|
|
| TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 176/326 (53%), Positives = 231/326 (70%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
+ +VE A+ A DG PS GPVYR +A++G G++S W F + ++ PNN+MLG
Sbjct: 7 FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++S+GK G YVW TY+EVYD I+ G+++RS G+ G++CGIYG NC EWII+MEACN+
Sbjct: 67 REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
+ VPLYDTLGA AVEFII+HAEVSIAFV+E KIP + P Y+KT+VSF V
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
QK+EAE+LG+ SW+EFL+LG ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246
Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
+IV V SE+D Y S+LPLAH++D+ IE I G SIGFWRGDV+
Sbjct: 247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306
Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTG 329
L+ED+ ELKP++F VPRV DR+YTG
Sbjct: 307 LIEDLGELKPSIFCAVPRVLDRVYTG 332
|
|
| TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 157/328 (47%), Positives = 215/328 (65%)
Query: 3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
+++ KVEE DGKPS GPVYR + ++ G + + + W F S ++ P+N ML
Sbjct: 2 KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61
Query: 63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
G R++ D KVGPY+W TY+EVY+ ++ GSA+R+ G PG R GIYG NCP+WIIAMEAC
Sbjct: 62 GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121
Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
+ + VPLYDTLG+ AV++I+ HAE+ FVQ+ KI +L +C LK IVSF N
Sbjct: 122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181
Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
VS +A E+GV +SW +FL +G E P K NI TIMYTSGT+G+PKGVVLT
Sbjct: 182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
+QA+ V+ +D + +D Y SFLPLAHI D++ E + KG S+G++ G++
Sbjct: 242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTG 329
L +DIQELKPT +GVPRV++RI+ G
Sbjct: 302 NVLRDDIQELKPTYLAGVPRVFERIHEG 329
|
|
| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 113/272 (41%), Positives = 154/272 (56%)
Query: 62 LGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
LG R DG VG Y W+TY E A GS + G+ G GIY N PEW+I A
Sbjct: 103 LGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHA 162
Query: 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181
C+S + VPLYDTLG +AV+FI+NHA V F + S+LSCL ++ +V
Sbjct: 163 CSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPS-VRLVVVVG 221
Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE--LPPKKKTNISTIMYTSGTTGEPKGVV 239
+ S GV S+ L G + + PPK +++TI YTSGTTG PKGVV
Sbjct: 222 GLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPKPD-DVATICYTSGTTGTPKGVV 280
Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
LT+ ++A V F V K S D Y S+LPLAHIY++ + ++ G ++GF++G
Sbjct: 281 LTHANLIANVAG--SSFSV--KFFSS-DVYISYLPLAHIYERANQILTVYFGVAVGFYQG 335
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331
D L++D+ L+PT+FS VPR+Y+RIY G I
Sbjct: 336 DNMKLLDDLAALRPTVFSSVPRLYNRIYAGII 367
|
|
| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 2.1e-46, P = 2.1e-46
Identities = 109/284 (38%), Positives = 155/284 (54%)
Query: 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
F + + N+ LG R SDG +G Y W+TY E GS + GVN GD G+Y
Sbjct: 90 FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149
Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
N PEW++ AC + + VPLYDTLG +AV+F++NHA + F + +LS L
Sbjct: 150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209
Query: 169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
++ IV GV+ S+++ L G P K +I+TI Y
Sbjct: 210 EIPS-IRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268
Query: 228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
TSGTTG PKGVVLT+ ++A V SV+ F + D Y S+LPLAHIY++ +
Sbjct: 269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321
Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
++ G ++GF++GDV LM+D L+PT+F VPR+Y+RIY G
Sbjct: 322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDG 365
|
|
| WB|WBGene00022037 acs-13 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 3.5e-45, P = 3.5e-45
Identities = 115/295 (38%), Positives = 170/295 (57%)
Query: 55 RIPNN-QMLGGR-KVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPG--DRCGIYGS 110
R+ NN MLG R K SDG + PYVW +Y + + A A R GV G + GIY
Sbjct: 120 RLSNNGPMLGRRVKQSDGSI-PYVWESYNTILERADNVSVAFRELGVPTGNAENIGIYSK 178
Query: 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE-NKIPSILSCLPR 169
N EWII A + + VP+Y+TLG+ A FI+N AE+ I + +K +L +
Sbjct: 179 NRAEWIITEFATYNYSNVIVPIYETLGSEASIFILNQAEIKIVVCDDISKATGLLKFKEQ 238
Query: 170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG----TLDCELPPKKKTNISTI 225
C L T+V V+ K A LGV ++E+ ++G T +PP + +++TI
Sbjct: 239 CPS-LSTLVVMEPVTDELKTTASSLGVEVLTFEDLEKIGKNAKTRPAHIPPTPE-DLATI 296
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
YTSGTTG PKGV+LT+ ++A+ + +D F +G + D+ SFLPLAH+ +++IE+
Sbjct: 297 CYTSGTTGTPKGVMLTHANVIADGVCMD-FFKHSGIAAT--DSMISFLPLAHMLERVIES 353
Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCTHKLTI 340
C G +GF+RGD+R L EDI+ELKPT+ VPRV +R+Y + + +K T+
Sbjct: 354 VCFCVGAKVGFYRGDIRVLAEDIKELKPTVVPVVPRVLNRLYDKVMSE-VNKSTL 407
|
|
| ZFIN|ZDB-GENE-050809-115 acsl1 "acyl-CoA synthetase long-chain family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 1.8e-42, P = 1.8e-42
Identities = 103/289 (35%), Positives = 166/289 (57%)
Query: 46 WQFFCDSAKRIPNN-QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP-GD 103
++FF R+PNN LG RK PY WL+Y+EV D A GSA+ RG + GD
Sbjct: 93 YEFFLRGL-RVPNNGPCLGSRKAGQ----PYKWLSYKEVADRAEFAGSALLHRGHSQSGD 147
Query: 104 R-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ-ENKIP 161
+ GI+ N PEW I+ AC + ++ VPLYDTLG A+ ++I+ A ++ +K
Sbjct: 148 KYIGIFAQNRPEWTISELACYTYSLVAVPLYDTLGTEAISYVIDKASITTIICDIADKAR 207
Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKT 220
IL C+ + TIV + S +A+ G+ S +E +G + + P P K
Sbjct: 208 LILDCVSGRKHSVTTIVIMESFDSELTAQAQNCGIDIISLKELEAIGKANHKTPIPPKPE 267
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHI 278
+++ I +TSGTTG PKG +LT+ +V+ + +T C ++ D + S+LPLAH+
Sbjct: 268 DLALICFTSGTTGNPKGAMLTHGNVVS---NCSAFIKITEVHCMLNQTDIHISYLPLAHM 324
Query: 279 YDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIY 327
+++++E + G IG+++GD+R LM+D++ LKPT+F VPR+ +R++
Sbjct: 325 FERVVEGVLLCHGAKIGYFQGDIRLLMDDLKNLKPTIFPVVPRLLNRMF 373
|
|
| UNIPROTKB|Q0VCZ8 ACSL1 "Acyl-CoA synthetase long-chain family member 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 2.4e-42, P = 2.4e-42
Identities = 100/275 (36%), Positives = 161/275 (58%)
Query: 58 NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN--PGDRCGIYGSNCPEW 115
N LG RK PY WL+Y++V D A GSA+ +G P GI+ N PEW
Sbjct: 106 NGPCLGSRKPDQ----PYEWLSYKQVEDMAECVGSALLHKGFKAAPDQFIGIFAQNRPEW 161
Query: 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE-NKIPSILSCLPRCCL-Y 173
+I + C + ++ VPLYDTLG A+ +IIN AE+S+ FV + K +L + +
Sbjct: 162 VIIEQGCFTYSMVIVPLYDTLGTEAITYIINKAELSLVFVDKPEKANLLLEGVENKLIPC 221
Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTSGTT 232
LKTIV + S + ++ GV S + LG + + P P +++ I +TSGTT
Sbjct: 222 LKTIVLMDSYGSDLLERGKKCGVEIISMKAMEDLGRANRQKPKPPVPEDLAVICFTSGTT 281
Query: 233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
G PKG ++T++ +V++ + +M T + + +DT SFLPLAH++++++E + G
Sbjct: 282 GNPKGAMITHRNVVSDCSAFVKMTENTF-IPTSDDTLISFLPLAHMFERVVECVMLCHGA 340
Query: 293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIY 327
IGF++GD+R LM+D++ L+PT+F VPR+ +R++
Sbjct: 341 KIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMF 375
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.766 |
| 3rd Layer | 6.2.1.3 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 341 | |||
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-135 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-131 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-100 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 6e-79 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 3e-59 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 4e-51 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 7e-43 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 3e-41 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 3e-34 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 6e-34 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 1e-32 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 4e-31 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 6e-30 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-26 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-25 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 8e-25 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 5e-24 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 2e-22 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-21 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-20 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 3e-20 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-19 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 3e-17 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 6e-16 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 3e-15 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 7e-15 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-14 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 3e-14 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 3e-14 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 6e-14 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-13 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 3e-13 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 6e-13 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 7e-13 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 9e-13 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 3e-12 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 4e-12 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-11 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 2e-11 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 2e-11 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 3e-11 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 3e-11 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 3e-11 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 4e-11 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 4e-11 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 9e-11 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-10 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 2e-10 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-10 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 3e-10 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 4e-10 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 4e-10 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 5e-10 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-09 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 2e-09 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-09 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 3e-09 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 3e-09 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 3e-09 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 3e-09 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 4e-09 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 4e-09 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 5e-09 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 6e-09 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 9e-09 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 9e-09 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-08 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 2e-08 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 4e-08 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 4e-08 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 5e-08 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 5e-08 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 5e-08 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 5e-08 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 7e-08 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 8e-08 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-07 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-07 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 2e-07 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-07 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-07 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-07 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 2e-07 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 3e-07 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 4e-07 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 4e-07 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 4e-07 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 5e-07 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 8e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-06 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-06 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 1e-06 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 3e-06 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 4e-06 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 6e-06 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 7e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-05 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 1e-05 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-05 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-05 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 2e-05 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-05 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 2e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 3e-05 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 3e-05 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 3e-05 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 4e-05 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 4e-05 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 4e-05 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 4e-05 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 6e-05 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 6e-05 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 6e-05 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 7e-05 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 7e-05 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 7e-05 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 7e-05 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 8e-05 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 8e-05 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 8e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 2e-04 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-04 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 2e-04 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 2e-04 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-04 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 4e-04 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 4e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 5e-04 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 5e-04 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 5e-04 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 8e-04 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 9e-04 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.002 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 0.002 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 0.002 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 0.002 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 0.003 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 0.003 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 0.003 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 0.003 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 0.004 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 646 bits (1668), Expect = 0.0
Identities = 263/331 (79%), Positives = 298/331 (90%)
Query: 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
M+ETYTVKVEE+RPA GKPS GPVYR IYAKDGLL+ PA ++SPWQFF D+ K+ PNNQ
Sbjct: 1 MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQ 60
Query: 61 MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
MLG R+V+D KVGPYVWLTY+EVYDAAIR GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61 MLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120
Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
ACNSQ ITYVPLYDTLGANAVEFIINHAEVSIAFVQE+KI SILSCLP+C LKTIVSF
Sbjct: 121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSF 180
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+VSS QK+EAEELGVSCFSWEEF +G+LDCELPPK+KT+I TIMYTSGTTGEPKGV+L
Sbjct: 181 GDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL 240
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
TN+AI+AEVLS D + VT +V +EED+YFS+LPLAH+YDQ+IET+CI KG SIGFW+GD
Sbjct: 241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGD 300
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331
+RYLMED+Q LKPT+F GVPRVYDRIYTG +
Sbjct: 301 IRYLMEDVQALKPTIFCGVPRVYDRIYTGIM 331
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 399 bits (1025), Expect = e-135
Identities = 174/326 (53%), Positives = 232/326 (71%), Gaps = 1/326 (0%)
Query: 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
+ +VEE + +DG+PS GPVYR I+AKDG G++S W F S ++ PNN MLG
Sbjct: 7 FIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGR 66
Query: 65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
R++ DGK G YVW TYQEVYD I+ G+++RS GV +CGIYG+N PEWII+MEACN+
Sbjct: 67 REIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126
Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
+ VPLYDTLGA AVEFII+H+EVSI FV+E KI + P Y+KT+VSF VS
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
QK+EAE G+ ++W+EFL+LG +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246
Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
+IV + V ++ + +D Y S+LPLAHI+D++IE I G +IGFWRGDV+
Sbjct: 247 SIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306
Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTG 329
L+ED+ ELKPT+F VPRV DR+Y+G
Sbjct: 307 LIEDLGELKPTIFCAVPRVLDRVYSG 332
|
Length = 666 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 388 bits (998), Expect = e-131
Identities = 153/328 (46%), Positives = 220/328 (67%), Gaps = 1/328 (0%)
Query: 3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
+++ +VEE DGKPS GPVYR + +K G + + + W F S ++ P+N+ML
Sbjct: 2 KSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKML 61
Query: 63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
G R++ DGKVGPY+W TY+EVY+ ++ GSA+R+ G PG R GIYGSNCP+WI+AMEAC
Sbjct: 62 GWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEAC 121
Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
+ ++ VPLYDTLG AV++I++HAE+ FVQ+ KI +L + LK IVSF +
Sbjct: 122 AAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTS 181
Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
V+ + +A ++GV +SW +FL +G + E P K +I TIMYTSGT+G+PKGVVLT
Sbjct: 182 VTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT 241
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
++A+ V VD + +D Y SFLPLAHI D++IE + KG S+G++ GD+
Sbjct: 242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDL 301
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTG 329
L +D+ ELKPT+ +GVPRV++RI+ G
Sbjct: 302 NALRDDLMELKPTLLAGVPRVFERIHEG 329
|
Length = 660 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 305 bits (783), Expect = e-100
Identities = 107/258 (41%), Positives = 151/258 (58%), Gaps = 42/258 (16%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
GPY W++Y+EV + A+ GS +R+ G+ PGD+ GI+ N PEWII +AC SQ++ VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
YDTLG A+E+I+N E+SI F K+
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88
Query: 193 ELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
+S+EE +LG + P K +++TIMYTSGTTG PKGV+LT+ IVA V
Sbjct: 89 ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
++++ + D Y S+LPLAHI+++++E C++ G IG++ GD R L DI+EL
Sbjct: 143 INKIV---PEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199
Query: 312 KPTMFSGVPRVYDRIYTG 329
KPT+F GVPRV DRIY G
Sbjct: 200 KPTVFVGVPRVLDRIYKG 217
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 6e-79
Identities = 108/285 (37%), Positives = 157/285 (55%), Gaps = 13/285 (4%)
Query: 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
F + + + + LG R DG VG Y W+TY E A GS + G+ G G+Y
Sbjct: 50 FVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLY 109
Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
N PEW+I AC++ + VPLYDTLG +AV+FI+NHAEV+ F + ++LSCL
Sbjct: 110 FINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS 169
Query: 169 RC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIM 226
+ L IV GV ++ + L G + P K +++TI
Sbjct: 170 EIPSVRL--IVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATIC 227
Query: 227 YTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
YTSGTTG PKGVVLT+ ++A V S+ F + D + S+LPLAHIY+++ +
Sbjct: 228 YTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPS-------DVHISYLPLAHIYERVNQ 280
Query: 285 THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
+H G ++GF++GD LM+D+ L+PT+F VPR+Y+RIY G
Sbjct: 281 IVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDG 325
|
Length = 651 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 3e-59
Identities = 85/264 (32%), Positives = 141/264 (53%), Gaps = 15/264 (5%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
G + +TY+E+Y+ S + S G+ GDR I+ +N PEW IA A + VP+
Sbjct: 41 GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPS-ILSCLPRCCLYLKTIVSFANV------SS 185
Y T + +I+N +E + FV+ ++ +L L C + IV V +
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKA 160
Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI 245
+ + G+S F + L+ + P K +++TI+YTSGTTG PKGV+LT++ +
Sbjct: 161 LVLEVFPDEGISLFL----IDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNL 216
Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
+A+V +D++ G D SFLPLAHI+++ E G ++ D R L+
Sbjct: 217 LAQVAGIDEVLPPIG----PGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLL 272
Query: 306 EDIQELKPTMFSGVPRVYDRIYTG 329
ED++E++PT+ GVPRV++++Y G
Sbjct: 273 EDLKEVRPTVMIGVPRVWEKVYKG 296
|
Length = 613 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 4e-51
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 19/252 (7%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
TY+E+ + A R +A+R+ GV PGDR I N PEW++A+ A YVPL +L A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
+ +I+ +E + + +P +L L + + L I+ + + E L
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLA--- 117
Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
+ + PP +++ I+YTSGTTG+PKGV+LT++ ++A + + F +
Sbjct: 118 --------GASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169
Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF---WRGDVRYLMEDIQELKPTM 315
T D LPL + G ++ + D L++ I++ K T+
Sbjct: 170 T-----PGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224
Query: 316 FSGVPRVYDRIY 327
GVP + +
Sbjct: 225 LYGVPTLLRLLL 236
|
Length = 412 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 7e-43
Identities = 103/330 (31%), Positives = 154/330 (46%), Gaps = 51/330 (15%)
Query: 39 PAGLESPW-------QFFCDSAKRIPNNQMLGGRKV--------SDGK------VGPYVW 77
P +E+PW F S K+ + ++LG RK+ SDG+ +G Y W
Sbjct: 47 PELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEW 106
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY +V++ F S + + G N +R I+ EW+IA++ C Q IT V +Y +LG
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLG 166
Query: 138 ANAVEFIINHAEVSIAFV---QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
A+ +N EV+ Q K+ I S L +K ++ +
Sbjct: 167 EEALCHSLNETEVTTVICDSKQLKKLIDISSQLET----VKRVIYMDDEGVDSDSSLSGS 222
Query: 195 G---VSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
VS FS E L + +D +LP +I+ IMYTSG+TG PKGV++T+ IVA V
Sbjct: 223 SNWTVSSFSEVEKLGKENPVDPDLP--SPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVA 280
Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME---- 306
V M VV + D Y ++LPLAHI + E+ G +IG+ G L +
Sbjct: 281 GV--MTVVPK--LGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNK 334
Query: 307 -------DIQELKPTMFSGVPRVYDRIYTG 329
D LKPT+ + VP + DR+ G
Sbjct: 335 IKKGTKGDASALKPTLMTAVPAILDRVRDG 364
|
Length = 696 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 3e-41
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 42/272 (15%)
Query: 69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
G+ Y T+ +V D A R +A++S G+ PGDR I NC EWIIA A
Sbjct: 1 GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFV--------QENKIPSILSCLPRCCLYLKTIVSF 180
VPLY TL A + +++ H++ FV + +P L + T+
Sbjct: 58 SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIIL--FPYSTLKDH 115
Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+ W++ L P + +++TI+YTSGTTG+PKGV+L
Sbjct: 116 ------------------YKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVML 157
Query: 241 TNQAI--VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFW 297
+ A A+ + D S+LPLAHI + I+E ++ G + F
Sbjct: 158 SFGAFAFAAQGTIEIIGL-------TPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFV 210
Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
+ D+Q +PT+F VPR++ + G
Sbjct: 211 ES-LDTFAADLQRARPTVFFSVPRLWTKFQQG 241
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 66/261 (25%), Positives = 105/261 (40%), Gaps = 33/261 (12%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY+E+ A R +A+++ GV PGDR I N PE++IA A VPL L
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +I+N A + + + + L ++
Sbjct: 99 PRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPI--------- 149
Query: 198 CFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
+ E G D + P +++ ++YTSGTTG PKGVVLT++ ++A +
Sbjct: 150 --TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL 207
Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM----------- 305
G + +D S+LPL HI+ I+ G G L+
Sbjct: 208 ---GGGLTPDDVVLSWLPLFHIFGLIV-------GLLAPLLGGGTLVLLSPEPFDPEEVL 257
Query: 306 EDIQELKPTMFSGVPRVYDRI 326
I++ K T+ SGVP +
Sbjct: 258 WLIEKYKVTVLSGVPTFLREL 278
|
Length = 534 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 6e-34
Identities = 73/268 (27%), Positives = 126/268 (47%), Gaps = 29/268 (10%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
++TY E+++ + FG + G+ G IY EW+ ++ SQ++ +Y
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCL-----PRCCLYLKTIVSFANVSSSQKKE 190
LG +A+ + + E +P++L + P TI+ ++ +S E
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-----TIIYLDSLPASVDTE 234
Query: 191 AEELGVSCFSWEEFLQLGTLD-CELPPKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIV 246
G +W + + G P N ++ IMYTSGTTG+PKGV+ T+ ++
Sbjct: 235 ----GCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLT 290
Query: 247 AEVLSVDQMFV-VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
A +L+++ + G E++TY S+LPLAHI + + + +G IGF G R L
Sbjct: 291 AGILALEDRLNDLIGPP-EEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLT 347
Query: 306 E-------DIQELKPTMFSGVPRVYDRI 326
+ D+ E +P GVPR++D I
Sbjct: 348 DTFARPHGDLTEFRPVFLIGVPRIFDTI 375
|
Length = 700 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 83/268 (30%), Positives = 134/268 (50%), Gaps = 33/268 (12%)
Query: 75 YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA-MEACNSQAITYVPLY 133
+ LTY++ Y+A + A G+ GI G N PEW IA + A + I V +Y
Sbjct: 6 WHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIA-VGIY 64
Query: 134 DTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
T A +++ +E +I V Q KI +I LP LK I+ + ++
Sbjct: 65 TTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPH----LKAIIQY-------RE 113
Query: 190 EAEELGVSCFSWEEFLQLG------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
+E + +SW+EF++LG LD + +K T++YTSGTTG PKGV+L++
Sbjct: 114 PLKEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHD 173
Query: 244 AIV--AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRGD 300
I A+ G+ ++ S+LPL+HI QI++ I G + F + D
Sbjct: 174 NITWTAKAAVKHMDLRTVGQ-----ESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPD 228
Query: 301 VR--YLMEDIQELKPTMFSGVPRVYDRI 326
L++ ++E++PT F GVPRV+++I
Sbjct: 229 ALKGTLVKTLREVRPTAFMGVPRVWEKI 256
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 40/109 (36%), Positives = 72/109 (66%), Gaps = 7/109 (6%)
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
++T++YTSGTTG PKGV+LT++ ++A+ ++ ++ ++ D SFLPLAH+++Q
Sbjct: 90 LATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLS-----PGDRVLSFLPLAHVFEQ 144
Query: 282 IIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
+ + + G + F L+ED++E++PT+F VPRV+++IY G
Sbjct: 145 RLGEYLPLSSGARVNF-AESPETLLEDLREVRPTVFFAVPRVWEKIYAG 192
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 6e-30
Identities = 64/268 (23%), Positives = 103/268 (38%), Gaps = 46/268 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ R +A+ + G+ GDR I+ N P W+IA VPL
Sbjct: 31 LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90
Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
A+ +I+ + FV + S + LP L+ +V + +E +
Sbjct: 91 ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPA----LEHVVIC------ETEEDDPH 140
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT------NQAIVAE 248
++ +FL G P +++ I++TSGTTG PKG +LT N A AE
Sbjct: 141 TEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAE 200
Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--------- 299
L + E D Y + P H++ G + RG
Sbjct: 201 YLGLT-----------EGDRYLAANPFFHVF-------GYKAGVNAPLMRGATILPLPVF 242
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIY 327
D + I+ + T+ G P +Y+ +
Sbjct: 243 DPDEVFRLIETERITVLPGPPTMYNSLL 270
|
Length = 513 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 62/284 (21%), Positives = 106/284 (37%), Gaps = 66/284 (23%)
Query: 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
+A+R P+ L G+ LTY E+ + + RF + ++ GV GDR
Sbjct: 3 DLLERAARRFPDRPAL----TFFGRK-----LTYAELDELSDRFAAYLQQLGVKKGDRVA 53
Query: 107 IYGSNCPEWIIAMEACNSQAITYV-----PLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
+ NCP++ IA V PLY +E +N + + V
Sbjct: 54 LMLPNCPQFPIAYFGI--LKAGAVVVPVNPLYT---PRELEHQLNDSGAKVLIV------ 102
Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
S+E+ L G +
Sbjct: 103 ------------------------------------AISFEDALASGAPLPLPVELSPDD 126
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
++ + YT GTTG PKG +LT++ +VA +V Q+ + ED + + LPL HI+
Sbjct: 127 LAVLQYTGGTTGVPKGAMLTHRNLVA---NVQQIAAWVKDLREGEDRFLTALPLFHIFGL 183
Query: 282 IIE-THCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVY 323
+ + G + ++++I+ + T+F GVP +Y
Sbjct: 184 TVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLY 227
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 25/252 (9%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
TY E+ + R +A+R+ GV GDR ++ N E++ A A P+ L
Sbjct: 33 TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
+ +I+N AE + V +P + + LP+ V V A L
Sbjct: 93 EEIAYILNDAEDRVVLVDSEFVPLLAAILPQL-----PTVRTVIVEGD--GPAAPLAPEV 145
Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
+EE L + + P + + + ++YTSGTTG PKGVVL+++ + L+V +
Sbjct: 146 GEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKL 205
Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHC----IHKGCSI---GFWRGDVRYLMEDIQEL 311
+ +D Y +P+ H++ + G R D L++ I+
Sbjct: 206 S-----RDDVYLVIVPMFHVH----AWGLPYLALMAGAKQVIPR--RFDPENLLDLIETE 254
Query: 312 KPTMFSGVPRVY 323
+ T F VP ++
Sbjct: 255 RVTFFFAVPTIW 266
|
Length = 521 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 12/245 (4%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LT+ ++ A+R +R G+ GD + N E+ C + +
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + + ++ + F +++ + + + I+ S +
Sbjct: 71 PDELAHQLKISKPKLIFCDPDELDKVKEAA-KELGPVVRIIVL----DSAPDGVLRIED- 124
Query: 198 CFSWEEFLQLGTLDCELPPK-KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
E L P K + + ++Y+SGTTG PKGV+L+++ I+A + V
Sbjct: 125 --LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTL 182
Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC-SIGFWRGDVRYLMEDIQELKPTM 315
G S D +FLP H Y + G I + D ++ I++ K T
Sbjct: 183 --KGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTS 240
Query: 316 FSGVP 320
VP
Sbjct: 241 LFLVP 245
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 56/259 (21%), Positives = 92/259 (35%), Gaps = 31/259 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY ++ R +A++ G GDR IY N PE +IA+ A + L
Sbjct: 41 LTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLS 100
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV--SSSQKKEAEELG 195
A AV I + + K I + S LG
Sbjct: 101 AEAVADRIADLGPKVLIADD-------GTFRN----GKEIALLEDADAVLSSVVVVPRLG 149
Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM 255
++E ++ + E P + ++YTSGTTG+PKG+V ++ + E
Sbjct: 150 ---LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRL-TAK 205
Query: 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI----HKGCSIGFWRGDVRY----LMED 307
F D +++ IY + + G + + G Y L E
Sbjct: 206 FHGDLL---PGDRFWNSSDPGWIYGL---WYSVFSPLASGATTVLYDGRPFYSPERLWEA 259
Query: 308 IQELKPTMFSGVPRVYDRI 326
+++ K T+F P R+
Sbjct: 260 LEKYKVTIFGTSPTFLRRL 278
|
Length = 528 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-22
Identities = 45/142 (31%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 188 KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
K++A++LG+S +++ + T + ++ + I++I+YTSGT+G+PKGV+L+N+ +
Sbjct: 272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYN 331
Query: 248 EVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME 306
V+ + T+ S+LP++HIY+++I G +I W D+ Y +
Sbjct: 332 TVVPLCKHSIFKKYNP----KTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387
Query: 307 DIQELKPTMFSGVPRVYDRIYT 328
DI K + +GVP+V++RIYT
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYT 409
|
Length = 746 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 2e-21
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS-QAITYVP 131
G + +T+ E+ + R + + + GV PGDR I N PEW+IA A + A+ VP
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVP-VP 59
Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENK 159
+Y T V +I+N + + FV E+K
Sbjct: 60 IYPTSSPEEVAYILNDSGARVVFV-EDK 86
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
TY E+ A R +A+ G+ GDR G N + + AC +VP+ L
Sbjct: 37 WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLT 96
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +I++H+ V P++ ++ + L +S
Sbjct: 97 GEELAYILDHSGARAFLVD----PALAPTAE---------------AALALLPVDTLILS 137
Query: 198 CF--------SWEEFLQLGTLDCELPPKKKTNIST---IMYTSGTTGEPKGVVLTNQAIV 246
W +F P + I+YTSGT PKG +LT++A++
Sbjct: 138 LVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALI 197
Query: 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
AE +S +V G + S +D LPL H
Sbjct: 198 AEYVSC----IVAGDM-SADDIPLHALPLYH 223
|
Length = 523 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 3e-20
Identities = 61/225 (27%), Positives = 91/225 (40%), Gaps = 35/225 (15%)
Query: 67 VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
VS G TY + Y R +A+ S GV PGDR N + A
Sbjct: 15 VSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFA----- 69
Query: 127 ITYVPLYDTLGANAV-------------EFIINHAEVSIAFVQENKIPSILSCLPRCCLY 173
VP G AV +IINHAE + FV ++ +P + + PR
Sbjct: 70 ---VP-----GMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRL--- 118
Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTG 233
T+ + + E V + EE L+ + + E P + + + YTSGTTG
Sbjct: 119 -PTVKAVVVYDDADMPETSLPNVYAY--EELLEEESPEYEWPELDENTAAGLCYTSGTTG 175
Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
PKGVV +++++V L+ SE DT +P+ H+
Sbjct: 176 NPKGVVYSHRSLVLHTLASAL---PDSLGLSESDTVLPVVPMFHV 217
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 2e-19
Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 10/217 (4%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY + + + S +R G+ G+R IY E + AM +VP+ L
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A V I+ V + ++ + LP C I+ V G
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLII----VGDPAHASEGHPGEE 141
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
SW + L LG D P ++++ I+YTSG+TG PKGVVL+++ +VA SV
Sbjct: 142 PASWPKLLALGDAD-PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI 294
+D + LPL+ Y T + G ++
Sbjct: 201 NR-----PDDRLLAVLPLSFDYGFNQLTTAFYVGATV 232
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 75/283 (26%), Positives = 117/283 (41%), Gaps = 52/283 (18%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYDT 135
TY E+ R + +R+ GV PGDR I NCP+ I+A A V PLY T
Sbjct: 59 TYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLY-T 117
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ-------- 187
F + A V+I + +K+ + L R L+TIVS N+ ++
Sbjct: 118 AHELEHPFEDHGARVAIVW---DKVAPTVERLRRT-TPLETIVS-VNMIAAMPLLQRLAL 172
Query: 188 -------KKEAEELGVSC---FSWEEFLQ---LGTLDCELPPK-KKTNISTIMYTSGTTG 233
+K L WE + G P+ +++ I+YTSGTTG
Sbjct: 173 RLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTG 232
Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGK-----VCSEEDTYFSFLPLAHIYDQIIETHCI 288
+PKG LT++ + A GK + + + LP+ H Y T C+
Sbjct: 233 KPKGAQLTHRNLFANAAQ--------GKAWVPGLGDGPERVLAALPMFHAYGL---TLCL 281
Query: 289 HKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRI 326
SIG D+ +++ +++ PT GVP +Y++I
Sbjct: 282 TLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKI 324
|
Length = 573 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 60/204 (29%), Positives = 88/204 (43%), Gaps = 20/204 (9%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA----CNSQAITYVPLYD 134
TY+E YD R SA+ G+ GD + N P +EA + A+ VPL
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPA---MLEAHFGVPMAGAV-LVPLNT 86
Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
L A+ + FI+NH+E + FV + + L L K I+ + S E E
Sbjct: 87 RLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL--LSTKEIIDTEIIVISPAAEDSEE 144
Query: 195 GVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
G +E+ L G D +PP + + ++ YTSGTTG PKGVV T++ L
Sbjct: 145 G----DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNV 200
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
+ + Y LP+ H
Sbjct: 201 IEWGMPD-----RPVYLWTLPMFH 219
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 29/200 (14%)
Query: 79 TYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
TY+E+ + A R +R+ GV PGDR + E ++A+ A YVPL
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A + FI+ A + + S L+ L + L + A + +
Sbjct: 61 AERLAFILEDAGARLLLTDS-ALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGP 119
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+++ ++YTSG+TG PKGVV+T++++V + + + +
Sbjct: 120 ----------------------DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG 157
Query: 258 VTGKVCSEEDTYFSFLPLAH 277
+ +D F L+
Sbjct: 158 L-----DPDDRVLQFASLSF 172
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 7e-15
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAIT------YV 130
LTY E+ + A R + ++G+ PGD GIY N E++ AM ++A+ YV
Sbjct: 29 LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV 88
Query: 131 P-----LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
L D A A+ + E + ++ +L LP+ L+T+V + S
Sbjct: 89 EDELRYLLDDSDAVAL---VYEREFA------PRVAEVLPRLPK----LRTLVVVEDGS- 134
Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
+L +E+ L G+ + + + ++ ++YT GTTG PKGV+
Sbjct: 135 -----GNDLLPGAVDYEDALAAGSPERDFGERSPDDL-YLLYTGGTTGMPKGVM 182
|
Length = 533 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 41/260 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + R+G+A+R G+ +R + + PE+ A VP+ L
Sbjct: 31 LTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLT 90
Query: 138 ANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
+ + +N + + + E + L P +L+ ++ L
Sbjct: 91 PDDYRYYLNDSRARVLVISEELWEVLKPALQKDP----HLRHVI------VVGGAGPGAL 140
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVD 253
S+ + + + E +++ +Y+SG+TG PKGVV + + V
Sbjct: 141 -----SYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAK 195
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM-------- 305
+ +T E+D FS L Y + G G LM
Sbjct: 196 NVLGIT-----EDDVVFSAAKLFFAYG-------LGNGLYFPLSVGATTVLMPERPTPDA 243
Query: 306 --EDIQELKPTMFSGVPRVY 323
I+ KPT+F GVP +Y
Sbjct: 244 VFATIERYKPTVFFGVPTLY 263
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 3e-14
Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 34/205 (16%)
Query: 72 VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
V LTY E+ A R + S GV PG+ I E ++A+ A YVP
Sbjct: 247 VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306
Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
L A + +I+ + ++ Q + L L + + + +
Sbjct: 307 LDPLYPAERLAYILEDSRPTLLLTQAH-----LRVDDVGLPGLALDDALSEIPDTDPIPQ 361
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
LG ++ I+YTSG+TG+PKGV + ++A+ +
Sbjct: 362 ALLG------------------------DALAYIIYTSGSTGQPKGVRIEHRALANLLND 397
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLA 276
F + +D + L+
Sbjct: 398 AGARFGLD-----ADDRVLALASLS 417
|
Length = 642 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 3e-14
Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 55/257 (21%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
T+Q++ A A++++G+ G R + G N E ++ + AC L
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHAC-------------LLL 47
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
A ++N + EN+ + L L V L S
Sbjct: 48 GAEIAMLNTR------LTENERTNQLEDLD---------VQLL------------LTDSL 80
Query: 199 FSWEEFLQLGTLDCELPPKKKTNIS---------TIMYTSGTTGEPKGVVLTNQAIVAEV 249
++F E + +T++S T+M+TSGTTG+PK V T + A
Sbjct: 81 LEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASA 140
Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQ 309
+ + T E+D + LPL HI I + +G ++ + L+E I
Sbjct: 141 VGSKENLGFT-----EDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQ-LLEMIA 194
Query: 310 ELKPTMFSGVPRVYDRI 326
+ T S VP +R+
Sbjct: 195 NERVTHISLVPTQLNRL 211
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-14
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 20/115 (17%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH--- 277
+ + I+YTSGTTG+PKGVVL+++ ++A ++ Q +T E D S LPL H
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLT-----EGDVLLSVLPLFHVVG 55
Query: 278 ----IYDQIIE--THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRI 326
+ ++ T +++G +E I++ + T+ GVP +YD +
Sbjct: 56 GGSGLLGALLAGGTVVLYEG------FPFPLSFLELIEQYRVTVLFGVPTLYDAL 104
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 72/294 (24%), Positives = 115/294 (39%), Gaps = 66/294 (22%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
T++++ DA R + + GV PGDR GI+ NC EW++ A V +
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 138 ANAVEFIINHAEVS-------------IAFVQE------NKIPSILSC--LPRCCLYLKT 176
A+ +E+ + + V A +QE P L+C LP L+
Sbjct: 106 ASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPE----LRG 161
Query: 177 IVSFANVSSS-----QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGT 231
+VS A + +A VS + E + +LD + P I YTSGT
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAE--RQASLDRDDP-------INIQYTSGT 212
Query: 232 TGEPKGVVLT------NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
TG PKG L+ N VAE L + +E D +PL H + ++
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGL-----------TEHDRLCVPVPLYHCFGMVLAN 261
Query: 286 -HCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCTH 336
C+ G + + D ++ ++E + T GVP ++ I + H
Sbjct: 262 LGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF-------IAELDH 308
|
Length = 558 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 12/170 (7%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY ++ D R+ A + G+ GD + N PE ++A+ A + L+
Sbjct: 38 LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGS 97
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ A +S V L LK +++ V + +L
Sbjct: 98 LDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP-----DGVDL--- 149
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
+ G +I+ + YT GTTG+PKGV+ T+++I
Sbjct: 150 ---LAAAAKFGPAPLV-AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIAT 195
|
Length = 524 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 28/250 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ R + + +RG GD + N E+ + A S
Sbjct: 33 LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYT 92
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + + +A + L L L+ +V S
Sbjct: 93 PAEIAKQVKDSGAKLAITT----SELAEKLAS--LALEPVVLLD----------SADDGS 136
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ L + + K+ +++ + Y+SGTTG KGV+LT++ ++A +V Q+
Sbjct: 137 AAIDDL-LFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA---NVAQLVA 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELK 312
G ED LP+ HIY +I + G ++ F D+ + I++ K
Sbjct: 193 GEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRF---DLEKFLAAIEKYK 249
Query: 313 PTMFSGVPRV 322
T VP +
Sbjct: 250 VTHLPVVPPI 259
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 7e-13
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 38/207 (18%)
Query: 78 LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
+TY+++++ + + + V G+R I N E+I+ + A VPL L
Sbjct: 28 MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRL 87
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS-QKKEAEELG 195
N + F + + ++ FV++ +F N++ S QK +
Sbjct: 88 TENELIFQLKDSGTTVLFVEK---------------------TFQNMALSMQKVSYVQRV 126
Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI----VAEVLS 251
+S S +E + + + I I YTSGTTG+PKG VLT + + + +
Sbjct: 127 ISITSLKEIEDRKIDNFVEKNESASFI--ICYTSGTTGKPKGAVLTQENMFWNALNNTFA 184
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHI 278
+D + D LPL HI
Sbjct: 185 ID---------LTMHDRSIVLLPLFHI 202
|
Length = 496 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 9e-13
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QI 282
I YTSGTTG PKG +LT++ ++ S+ + +T E D +PL H++ +
Sbjct: 6 LIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLT-----EGDRTLVPVPLFHVFGLVL 60
Query: 283 IETHCIHKGCSI---GFWRGDVRYLMEDIQELKPTMFSGVP 320
+ G ++ + D + I+ + T GVP
Sbjct: 61 GVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVP 99
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 28/169 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + A R +R+RGV PGD + PE ++A+ A YVPL
Sbjct: 13 LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A + F++ + + E+ P A++L +
Sbjct: 73 AERLAFMLEDSGARVLLTDESLAPLA--------------------------RADQLPLV 106
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
E + P +++ +MYTSG+TG PKGV + ++ +V
Sbjct: 107 ILEEELDAEDA--GPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 15/207 (7%)
Query: 78 LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
T+ + A A+ G+ R G NC E + + A + PL L
Sbjct: 39 TTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQL 98
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEEL- 194
+ + IINHAE + + L C C+ V F S + A
Sbjct: 99 MNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCV---RAVVFIGPSDADSAAAHMPE 155
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS--- 251
G+ +S+E L + + P +T + I Y++GTTG PKGVV +++++ + LS
Sbjct: 156 GIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRT 215
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHI 278
D + V G+ ++ +P+ H+
Sbjct: 216 TDSLAVTHGE------SFLCCVPIYHV 236
|
Length = 576 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
+ + I+YTSGTTG PKGVVLT+ + A ++ + + T D LPL H++
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWT-----ASDVLLHALPLHHVHG 143
Query: 281 QIIETHCIH-KGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRI 326
HC G S+ F R D + + T+F GVP +Y R+
Sbjct: 144 LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRL 191
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 39/213 (18%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
T++E+ D A+ RGV GDR I N E++ ++ A N VP+ L
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV- 196
+ F+++ + + + A V+++ + L
Sbjct: 103 PPEIAFLVSDCGAHVVVTEA---------------------ALAPVATAVRDIVPLLSTV 141
Query: 197 ---------SCFSWEEFLQLGTLDCELPPKKKTNIST--IMYTSGTTGEPKGVVLTNQAI 245
S +E+ L P N S IMYTSGTTG PKG VLT+ +
Sbjct: 142 VVAGGSSDDSVLGYED--LLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANL 199
Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
+ + + T D F +PL HI
Sbjct: 200 TGQAM----TCLRTNGADINSDVGFVGVPLFHI 228
|
Length = 542 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
TY E+YD R +R GV GDR IY PE +IAM AC + ++
Sbjct: 74 YTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA 133
Query: 138 ANAVEFIINHAE----VSIAF-VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK--- 189
+ + I+ A+ V+ +F ++ ++ + K ++ A + SQ K
Sbjct: 134 SKELASRIDDAKPKLIVTASFGIEPGRV-----------VPYKPLLDKA-LELSQHKPHK 181
Query: 190 ---------EAEELGVSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
A W E + + +DC P + T+ I+YTSGTTG+PKGVV
Sbjct: 182 VLILNRGQVPAPLKPGRDLDWAELMAKARPVDCV--PVESTDPLYILYTSGTTGKPKGVV 239
Query: 240 LTN 242
Sbjct: 240 RDT 242
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 29/164 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+T+ E+++A + + + GV GDR + N E I+ + A V L L
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + ++ AEV ++ L V FA + + K+EAE
Sbjct: 88 REELLWQLDDAEVKCLITDDDFEAK---------LIPGISVKFAELMNGPKEEAEIQ--- 135
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
EEF LD ++TIMYTSGTTG+PKGV+ T
Sbjct: 136 ----EEF----DLD---------EVATIMYTSGTTGKPKGVIQT 162
|
Length = 483 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 24/202 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L YQ + A + + G+ PGDR + +++ A AC + VPL +G
Sbjct: 50 LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMG 109
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
E I +A S P + ++ + N ++ +
Sbjct: 110 FGGRESYIAQLRGMLA-----------SAQPAAIITPDELLPWVNEATHGNP-----LLH 153
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQM 255
S F L D LP +I+ + Y+SG+T P+GV++T++A++A + +S D +
Sbjct: 154 VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL 213
Query: 256 FVVTGKVCSEEDTYFSFLPLAH 277
V G C S+LP H
Sbjct: 214 KVRPGDRC------VSWLPFYH 229
|
Length = 579 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 12/206 (5%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E+ + + RF + +R RGV GDR ++ NCP++ I +VP+
Sbjct: 59 ITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFR 118
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + + +N A + + P + L + S A+V ++ +
Sbjct: 119 EHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLR 178
Query: 198 -----CFSWEEFLQL---GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV 249
+ L T LPP ++ + YT GTTG PKG T + +V
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTA 238
Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPL 275
+ V E+ + SFLP
Sbjct: 239 AA----AYAVAVVGGEDSVFLSFLPE 260
|
Length = 567 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 29/182 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ A +A+R+ GV PGD + E I+A+ YVP+
Sbjct: 13 LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A I+ A + E +
Sbjct: 73 AERRAAILARAGARAVLTD----------------------------PGLAQPEEAPDLL 104
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ + P +++ +++TSG+TGEPKGV++T++A V +L V++ F
Sbjct: 105 VVADDAAAAESPAP-PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFG 163
Query: 258 VT 259
V
Sbjct: 164 VG 165
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 50/256 (19%), Positives = 79/256 (30%), Gaps = 97/256 (37%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LT+QE+ + + + GV GDR + N E+++ A L
Sbjct: 2 LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLAL-------------LR 48
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
AV +N LP+ EE
Sbjct: 49 LGAVVLPLNPR------------------LPQ----------------------EE---- 64
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
++ L D + +TI++TSG+TG+PK VV T +A +
Sbjct: 65 ---LQQQLADLQPDLD-------RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG 114
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-------------DVRYL 304
+T +D + LPL H+ G +I R D +
Sbjct: 115 LT-----PDDNWLLSLPLFHV-----------SGLAI-VMRSLLAGGALVLPDKFDAEAI 157
Query: 305 MEDIQELKPTMFSGVP 320
E ++ T S VP
Sbjct: 158 AEALENHGVTHISLVP 173
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 9e-11
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+++ E+ R +A+R GV PGDR Y N PE +IAM A S + G
Sbjct: 87 ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFG 146
Query: 138 ANAV--EFIINHAEVSIA----------FVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
AV F +V A + KI I+ LP L+ +V +SS
Sbjct: 147 VEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS----LEAVVVVPYLSS 202
Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPK-KKTNIST---IMYTSGTTGEPKGVV 239
+ FS L D P + ++ I+Y+SGTTG PK +V
Sbjct: 203 -----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIV 255
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 29/219 (13%)
Query: 78 LTYQEVYDAAIRF-GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAITYVPLYDT 135
++Y+E+ + A R G + GV GDR +Y N P+++IA A + A+ VP+
Sbjct: 36 ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVV-VPVNPM 94
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN---------VSSS 186
+ + + +A V P + + L + +++ V +
Sbjct: 95 NREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAW 154
Query: 187 QKKEAEELGVSCF---SWEEFLQLGTLDCELPPKKKT----NISTIMYTSGTTGEPKGVV 239
+ E ++ +W+E L L P T +++ + YTSGTTG PKG +
Sbjct: 155 LRAEPPLQALAPGGVVAWKE-----ALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCM 209
Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
T++ ++A + T E + LPL H+
Sbjct: 210 HTHRTVMANAVGSVLWSNSTP-----ESVVLAVLPLFHV 243
|
Length = 546 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 31/204 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ A + +++ G PGDR + +++ A C LY
Sbjct: 24 LTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGC---------LY---- 69
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
A A+ + ++ +IL R +++ + V ++ +
Sbjct: 70 AGAIAVPAPPPRRLGRHLA--RLAAILADAGAR------AVLTTSAVLAALRAALAAPAA 121
Query: 197 SCFSW---EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
++ L D PP +I+ + YTSG+TG PKGV++T+ ++A ++
Sbjct: 122 LLLLLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLA---NLR 178
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
+ G +D S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 10/172 (5%)
Query: 70 GKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY 129
G V Y +Y E+ + R + S G+ GD+ ++ NCPE+I
Sbjct: 33 GVVRRY---SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIM 89
Query: 130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
VP+ L +I+ +++ S+ P L+ I ++
Sbjct: 90 VPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHIC----LTRVALP 145
Query: 190 EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
+ GVS F+ + Q TL C PP + + I++TSGTT PKGVV+T
Sbjct: 146 ADD--GVSSFTQLKAQQPATL-CYAPPLSTDDTAEILFTSGTTSRPKGVVIT 194
|
Length = 517 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 47/199 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYD 134
TY+E + + + G+ GDR GI+ N PEW++ A V P Y
Sbjct: 44 WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYR 103
Query: 135 TLGANAVEFIINHAEVS-------------IAFVQENKIPSILSCLPRCCL-----YLKT 176
+ +E+ +N + +A + E P + +C P L+
Sbjct: 104 L---SELEYALNQSGCKALIAADGFKDSDYVAMLYE-LAPELATCEPGQLQSARLPELRR 159
Query: 177 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT--LDCELPPKKKT-------NISTIMY 227
++ +E +++E L LG D EL ++ T NI Y
Sbjct: 160 VIFL----------GDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQ---Y 206
Query: 228 TSGTTGEPKGVVLTNQAIV 246
TSGTTG PKG LT++ I+
Sbjct: 207 TSGTTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 40/200 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+YQ+++ +R+ GV R + N +W+IA AC I +P+
Sbjct: 3 LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE-AEELGV 196
A + ++N A ++S ++S LG
Sbjct: 60 AQQTQHLLNDAGAD------------------------LLISDDPDAASALHTPFATLGE 95
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
+ P + + I YTSG+TG+PKGV L+ A+ S+ +
Sbjct: 96 DLYIA-------LRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI 148
Query: 257 VVTGKVCSEEDTYFSFLPLA 276
+ E + + LPLA
Sbjct: 149 AIL-----EPERHLCLLPLA 163
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 42/205 (20%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
W TY E+ R + +R RG G+R + N + AC YVPL L
Sbjct: 23 W-TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
A+ ++ ++ AE + + + A +S
Sbjct: 82 SASELDALLQDAEP--RLLLGDDAVAAGRTDV---------EDLAAFIASADALEPADTP 130
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
S +PP++ +S I++TSGT+G+PKGV+L+ + + + F
Sbjct: 131 S----------------IPPER---VSLILFTSGTSGQPKGVMLSERNLQQTAHN----F 167
Query: 257 VVTGKVCSEEDTYFSFL---PLAHI 278
V G+V D + SFL P+ HI
Sbjct: 168 GVLGRV----DAHSSFLCDAPMFHI 188
|
Length = 488 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 24/174 (13%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI-----IAMEACNSQAITYV 130
T+ E Y R SA+ RG+ GD + N P + + M +
Sbjct: 42 RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNT- 100
Query: 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSI---LSCLPRCCLYLKTIVSFANVSSSQ 187
L A ++ F++ H E + V L+ LP K +V +V +
Sbjct: 101 ----RLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPG----PKPLV--IDVDDPE 150
Query: 188 KKEAEELGVSCFSWEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
+G +E FL G LP + I+ + YTSGTTG PKGVV
Sbjct: 151 YPGGRFIGA--LDYEAFLASGDPDFAWTLPADEWDAIA-LNYTSGTTGNPKGVV 201
|
Length = 545 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 5e-10
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
I+YTSGTTG PKGV+LT++ ++A ++ G S D Y PL H +
Sbjct: 6 ILYTSGTTGRPKGVMLTHRNLLANAVNALA-----GVDLSPGDVYLLAAPLYHAAGGLFL 60
Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRI 326
+ G ++ D +++ I+ + T VP ++ R+
Sbjct: 61 LPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRL 103
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
L K + + I++TSG+ G PKGVVL+++ ++A + + + + ED L
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVI-----DLNTEDVLLGAL 193
Query: 274 PLAHIY 279
PL H +
Sbjct: 194 PLFHAF 199
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 60/262 (22%), Positives = 104/262 (39%), Gaps = 23/262 (8%)
Query: 72 VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
G WLTY V A GS + + GV PGD G+ +I AC T +P
Sbjct: 452 SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLP 511
Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE- 190
L + + +I+ ++ + F N + +IL+C R L+T+V S ++
Sbjct: 512 LVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSR---KLETVV---YTHSFYDEDD 563
Query: 191 ---AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV- 246
A +L ++ +E Q G L + T + Y T G A+V
Sbjct: 564 HAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASG---DGLAVVR 620
Query: 247 ---AEVLSVDQMFVVTGKVCS--EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
A+VL V+TG + S ++ F P A +++++ G ++ D
Sbjct: 621 VTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVA--TVDA 678
Query: 302 RYLMEDIQELKPTMFSGVPRVY 323
+L + +PT+ P ++
Sbjct: 679 AHLQRAFVKFQPTILVAAPSLF 700
|
Length = 1452 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 61/266 (22%), Positives = 112/266 (42%), Gaps = 27/266 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA---CNSQAITYVPLYD 134
+T+ +D RF + ++ GV GDR I NCP+ +I + PLY
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 135 TLGANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSS----- 186
+E+ ++ + + + ++ ++ S + + I F +
Sbjct: 110 E---RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPF 166
Query: 187 -QKKEAE-----ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
QKK++ + W + E+P + +++ + YT GTTG PKGV+L
Sbjct: 167 VQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVML 226
Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSE-EDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFW- 297
T++ +V+ L M V C E E+ LP H+Y + I +G +
Sbjct: 227 THKNLVSNTL----MGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP 282
Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVY 323
+ D++ + E I++ K T+F G P +Y
Sbjct: 283 KFDMKMVFEAIKKHKVTLFPGAPTIY 308
|
Length = 563 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 23/106 (21%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
I++TSGTTG PKGV LT++ ++A ++ + +T D + +PL HI+ I+
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLT-----PSDRCLNVMPLFHIHGLIVS 61
Query: 285 T-HCIHKGCSI---------GFWRGDVRYLMEDIQELKPTMFSGVP 320
+ G S+ FW +DI + + T +S VP
Sbjct: 62 LLATLLAGGSVVCPPKFSASKFW--------DDIAKYRVTWYSAVP 99
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 220 TNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
+ + I+YTSGTTG PKGV+LT+ Q + A L+ + +D + LPL HI
Sbjct: 81 VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLL------GLRPDDVLLTPLPLFHI 134
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 17/110 (15%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY- 279
+++ I+YTSG+TGEPKGV+L+++ + A S+ Q +T E+D + LP + Y
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELT-----EDDRILAVLPFSFDYG 57
Query: 280 -DQIIETHCIHKGCSIGFWRGDVRYLM-----EDIQELKPTMFSGVPRVY 323
Q++ T G + + R+ + + + + T F+GVP +
Sbjct: 58 LSQLL-TAFRVGGTLV----LESRFAFPRDVLKHLAKERITGFAGVPTTW 102
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 42/171 (24%), Positives = 62/171 (36%), Gaps = 57/171 (33%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
L+Y E+ + + R + + GV PGDR G+ PE ++A+ A YVPL+
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRT-PELVVAILATWRVGAIYVPLFTAF 59
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
G A+E+ + H+ V N +
Sbjct: 60 GPKAIEYRLGHSG--------------------------AKVVVTNAA------------ 81
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
G LD ++ MYTSGTTG PKGV + A+ A
Sbjct: 82 ---------NRGKLD--------DDLFAQMYTSGTTGLPKGVPVPLNALAA 115
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 62/270 (22%), Positives = 100/270 (37%), Gaps = 64/270 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
TY ++ A+ R + + + GV PGDR + PE + A ++PL
Sbjct: 29 YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+++ I AE P+++ C P FA +S K A G
Sbjct: 89 LAELDYFIGDAE-----------PALVVCDPAN---------FAWLS----KIAAAAGAP 124
Query: 198 CFSWEEFLQLGTLDC-----------------ELPPKKKTNISTIMYTSGTTGEPKGVVL 240
+ TLD E P+ +++ I+YTSGTTG KG +L
Sbjct: 125 --------HVETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAML 176
Query: 241 T--NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI-HKGCSIGFW 297
+ N A L F + +D LP+ H + + T+ G S+ +
Sbjct: 177 SHGNLLSNALTLVDYWRF-------TPDDVLIHALPIFHTHGLFVATNVALLAGASM-IF 228
Query: 298 RGDVRYLMEDIQELKP--TMFSGVPRVYDR 325
++ + + L P T+ GVP Y R
Sbjct: 229 LP--KFDPDAVLALMPRATVMMGVPTFYTR 256
|
Length = 504 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 36/251 (14%)
Query: 41 GLESPWQFFC----DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS 96
GL W C D A RI N+ + R V GP V TY +++D A++ A+
Sbjct: 3 GLMQDWPLLCHRIIDHAARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDR 58
Query: 97 RGVNPGDRCGIYGSNCPE----WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152
G+ GDR N W M AI + + L + +IINHAE +
Sbjct: 59 DGIKLGDRVATIAWNTWRHLEAWYGIM---GIGAICHT-VNPRLFPEQIAWIINHAEDRV 114
Query: 153 AFVQENKIP---SILSCLPRCCLYLKTIVSF---ANVSSSQKKEAEELGVSCFSWEEFLQ 206
+P I LP ++ V A++ + K A ++EE++
Sbjct: 115 VITDLTFVPILEKIADKLPS----VERYVVLTDAAHMPQTTLKNA-------VAYEEWIA 163
Query: 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266
D + + + YTSGTTG+PKGV+ ++++ V L + + G +
Sbjct: 164 EADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAA-- 220
Query: 267 DTYFSFLPLAH 277
DT +PL H
Sbjct: 221 DTMLPVVPLFH 231
|
Length = 542 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 24/78 (30%), Positives = 34/78 (43%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ DAA R +A+ GV PGD N E+++ AC P+
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 138 ANAVEFIINHAEVSIAFV 155
+ FI+ A + FV
Sbjct: 62 ERELGFILRQARARVLFV 79
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 6e-09
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259
++ +F++ E P +++ + YT GTTG PKG +LT+ + + V D +
Sbjct: 172 TYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPS 231
Query: 260 GKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFS 317
+ + LPL HIY +I + +G I R DV + DI+E + T+F
Sbjct: 232 RATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFP 291
Query: 318 GVPRVY 323
GVP ++
Sbjct: 292 GVPTMW 297
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 9e-09
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
TY E+ + R + + + GV PGDR + NCPE++ A A N VP+ L
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 137 GANAVEFIINHAEVSIAFVQENKI 160
+ I++H+ + V I
Sbjct: 63 RGEELAHILDHSGARLIVVDTAAI 86
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY+E++D A RF + +R+ GV+PGDR + + PE + A AC V L L
Sbjct: 11 LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70
Query: 138 ANAVEFIINHAE 149
+E I++ +
Sbjct: 71 PQDLEHILDDSG 82
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
LTY E+ + R A+ + G+ PGDR + E+++ A VPL +
Sbjct: 11 SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70
Query: 137 GANAVEFIINHAEVSIAF 154
A + +I++ ++ S+
Sbjct: 71 PAAELAYILSDSQPSLLV 88
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 33/200 (16%)
Query: 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
Q A++ P L V +V L+Y E+ A R + + GV P G
Sbjct: 516 QLIEAQARQHPERPAL----VFGEQV-----LSYAELNRQANRLAHVLIAAGVGPDVLVG 566
Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
I E ++ + A YVPL + + ++++ + V + Q +L+
Sbjct: 567 IAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQ----SHLLAQ 622
Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
LP A + S E +L + + L P N++ ++
Sbjct: 623 LPVP----------AGLRSLCLDEPADL------LCGYSGHNP-EVALDPD---NLAYVI 662
Query: 227 YTSGTTGEPKGVVLTNQAIV 246
YTSG+TG+PKGV +++ A+
Sbjct: 663 YTSGSTGQPKGVAISHGALA 682
|
Length = 3956 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 59/269 (21%), Positives = 98/269 (36%), Gaps = 39/269 (14%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT--- 135
T+ + Y R SA+ R + PG + N P +A VP+
Sbjct: 47 TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIP--------AMYEAHFGVPMAGAVVN 98
Query: 136 -----LGANAVEFIINHAEVSIAFVQENKIP------SILSCLPRCCLYLKTIVSFANVS 184
L A + F++ H++ + V + IL+ + ++ + +
Sbjct: 99 CVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPT 158
Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCEL---PPKKKTNISTIMYTSGTTGEPKGVVLT 241
K LG +E+FL+ G D E PP + + YTSGTT PKGVVL
Sbjct: 159 CDPKSLQYALGKGAIEYEKFLETG--DPEFAWKPPADEWQSIALGYTSGTTASPKGVVLH 216
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH----IYDQIIETHCIHKGCSIGFW 297
++ LS ++ + +E Y LP+ H + + C G +I
Sbjct: 217 HRGAYLMALSNALIWGM-----NEGAVYLWTLPMFHCNGWCFTWTLAALC---GTNICLR 268
Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRI 326
+ + + I T F P V + I
Sbjct: 269 QVTAKAIYSAIANYGVTHFCAAPVVLNTI 297
|
Length = 567 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 16/203 (7%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
TY E AA A+ + GV GDR + N E++ C VP+ L
Sbjct: 46 RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTAL 105
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
+E I+ ++ + V+ + ++ + P L L + +S
Sbjct: 106 RGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASVSVPAG----- 159
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQM 255
+S L + + + I+YTSGTTG KGV + Q S + +
Sbjct: 160 --WSTAPLPPLDAPAPAAAVQP-GDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL 216
Query: 256 FVVTGKVCSEEDTYFSFLPLAHI 278
+ +D ++ LPL H
Sbjct: 217 EIG------ADDVLYTTLPLFHT 233
|
Length = 542 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 18/182 (9%)
Query: 64 GRKVSDGKVGPYVW------LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117
R V +G+ G + L+Y E+ R G+A+R GV +R + + ++ I
Sbjct: 11 DRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPI 70
Query: 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTI 177
A I V L L A+ +++ + + FV +P I + L + +L+
Sbjct: 71 AFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP-HLEHR 129
Query: 178 VSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKG 237
V + + + AE L E+F + + + + +Y+SG+TG PKG
Sbjct: 130 VVVGRPEAGEVQLAELLATES---EQF--------KPAATQADDPAFWLYSSGSTGMPKG 178
Query: 238 VV 239
VV
Sbjct: 179 VV 180
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
++YTSGTTGEPKGV+ T+ ++AEV S + +T +D PLAHI
Sbjct: 98 LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLT-----PDDVVLMPSPLAHI 146
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 5e-08
Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 23/205 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E+ + R +R+ G+ GD I N PE+ A + Y P+ L
Sbjct: 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71
Query: 138 ANAVEFIINHAEVSIAFVQENKIPS---ILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
A + +I++ + + V + + + LP L + A +
Sbjct: 72 AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVV-------------AGPV 118
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV--LTNQAIVAEVLSV 252
+ + + + P +T + ++Y+SGTTG PKG+ L E +
Sbjct: 119 P----GFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDP-DEAPGM 173
Query: 253 DQMFVVTGKVCSEEDTYFSFLPLAH 277
+ G + Y S PL H
Sbjct: 174 MLALLGFGMYGGPDSVYLSPAPLYH 198
|
Length = 502 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
T+ ++ DA+ R +A+R GV GDR G+Y PE IA A VPL G
Sbjct: 8 TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILS 165
+AVE + + + + P+IL
Sbjct: 68 DAVEHRLRDSGARVLVTDGSDDPAILI 94
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 5e-08
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + A R + + + G GD +YG P+ A+ AC YVPL +
Sbjct: 17 LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPSQP 76
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL 164
A + I+ A + + + IL
Sbjct: 77 AERIAKILEAAGPAALVADPDDLAYIL 103
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPLYDTL 136
TY+E+ + + +F + ++ GV GDR I+ PE + + A + AI PL++
Sbjct: 74 YTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI-VGPLFEAF 132
Query: 137 GANAVEFIINHAE----VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
AV + +E ++ + E K L L K ++ E
Sbjct: 133 MEEAVRDRLEDSEAKVLITTPALLERKPADDLPSL-------KHVLLVG--------EDV 177
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
E G + ++ + + ++ + + + + YTSG+TG+PKGV+ + A++
Sbjct: 178 EEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQ 232
|
Length = 570 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 8e-08
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
P K + +TI+++SG+ GEPKGV+L++ I++ + + +F + +D S L
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLR-----NDDVILSSL 830
Query: 274 PLAH 277
P H
Sbjct: 831 PFFH 834
|
Length = 1146 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 31/227 (13%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
G + +Y E+ + A R + +R+ G+ PGD + +++ A AC VP+
Sbjct: 35 GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL--PRCCLYLKTIVSFANVSSSQK-- 188
N A K+ +I L P + A V++
Sbjct: 95 ----AVPPTYDEPNAAV--------AKLRNIWELLGSPVI------LTDAALVAALAGLR 136
Query: 189 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
A + + EE D L P + + + ++ TSG+TG PK VVLT++ I+A
Sbjct: 137 TRAGLEALRVLAIEELRSAPP-DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILAR 195
Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCS 293
Q+ T +D +++PL H+ I+ H ++ GC
Sbjct: 196 SAGTVQVNGFT-----PDDVSLNWMPLDHV-GGIVMLHLRDVYLGCQ 236
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 32/183 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L Y E+ A R A+ RGV P G+ E ++A+ A YVPL
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A + +++ + V + Q + LP A + V
Sbjct: 597 AERLAYMLEDSGVQLLLSQSHLGRK----LPL---------------------AAGVQVL 631
Query: 198 CF----SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
+W E EL P+ N++ ++YTSG+TG+PKG ++A+ + +
Sbjct: 632 DLDRPAAWLEGYSEENPGTELNPE---NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQ 688
Query: 254 QMF 256
Q +
Sbjct: 689 QAY 691
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 37/201 (18%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y E+ A R +R+RGV P R I E ++A+ A YVPL D
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPL-D--- 2084
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL--- 194
N+ +A++ E+ S A + +Q+ E L
Sbjct: 2085 -------PNYPAERLAYMLED--------------------SGAALLLTQRHLLERLPLP 2117
Query: 195 -GVSCFSWEEFLQLGTLDCELPPKK--KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
GV+ + + P + N++ ++YTSG+TG PKGV +++ A+VA +
Sbjct: 2118 AGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQA 2177
Query: 252 VDQMFVVTGKVCSEEDTYFSF 272
+ + ++ C + FSF
Sbjct: 2178 AGERYELSPADCELQFMSFSF 2198
|
Length = 5163 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 26/207 (12%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
TY + AA R + + ++G+ PGDR E+ I AC VPL +
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 139 NAVEFIIN--HAEVSIA---FVQENKIPSILSC---LPRCCLYLKTIVSFANVSSSQKKE 190
+ +++N A++ A F Q + IL LP L+ IV K
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP----QLQQIVGV-------DKL 159
Query: 191 AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
A S S + + ++ +++TSGT G PKGV+LT+ I+A
Sbjct: 160 APAT--SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS-- 215
Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAH 277
++ + + +D + PL H
Sbjct: 216 --ERAYCARLNLTW-QDVFMMPAPLGH 239
|
Length = 547 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
+TY+E++ RF +A++S GV GDR IY PE +AM AC
Sbjct: 99 ITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143
|
Length = 637 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 54/174 (31%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+YQE+ + + RF + + S GV G+R PE +A Y PL+ G
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
I + E+ A V L P LY +T
Sbjct: 61 PEP---IRDRLELGEAKV--------LITTPE--LYERT--------------------- 86
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
D E P + + +TSGTTG+PKGV+ ++A+VA +
Sbjct: 87 -------------DPEDP-------ALLHFTSGTTGKPKGVLHVHRAVVAHYAT 120
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 22/111 (19%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
I+YTSGTTG PKGVVL+ +AI A++ ++ + + T +D LPL H++ ++
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTA-----DDVLVHGLPLFHVHGLVLG 187
Query: 285 THCIHKGCSIGFWR--GDVRYLMEDIQE-------LKPTMFSGVPRVYDRI 326
+G R + E T++ GVP V+ RI
Sbjct: 188 V--------LGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYFGVPTVWSRI 230
|
Length = 471 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 29/209 (13%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN---SQAITYVPLYD 134
TY +V + R + + G+ GD + NCPE+++A + + T P Y
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFY- 109
Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
E I A+ S A K+ SC Y+ + A ++
Sbjct: 110 ----TPAE-IAKQAKASGA-----KLIITQSC------YVDKLKGLAEDDGVTVVTIDDP 153
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
C + E Q + ++ + Y+SGTTG PKGV+LT++ +V SV Q
Sbjct: 154 PEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT---SVAQ 210
Query: 255 MFVVTGKV----CSEEDTYFSFLPLAHIY 279
V G+ +D LP+ HIY
Sbjct: 211 Q--VDGENPNLYFHSDDVILCVLPMFHIY 237
|
Length = 537 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV----VTGKVCSEED 267
P K+ +++ IMY+SGTTG KGVVLT++ ++A V ++FV + ++
Sbjct: 190 VPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMV----ELFVRFEASQYEYPGSDN 245
Query: 268 TYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRV 322
Y + LP+ HIY + + G +I R D +++ I K T F VP +
Sbjct: 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPI 302
|
Length = 560 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E+ + R ++ +GV GDR +Y N P+++IA A VP+
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 138 ANAVEFIINHAEVSIAFV 155
+E I+N + + V
Sbjct: 62 EAELEHILNDSGARVLIV 79
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
I+ I ++SG+TGEPKGV+LT++ ++ + + ++ + ED + S++PL H
Sbjct: 108 IAFIQFSSGSTGEPKGVILTHKNLLTNIEA-----IIEAAEITSEDVFLSWMPLTH 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
+I+ + YT GTTG KG +LT++ +VA + Q TGK+ + + LPL HI+
Sbjct: 209 DIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFA 268
Query: 281 QIIETHCIHK--GCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRI 326
K GC+ I R D+ ++++++ + T F+GV +++ +
Sbjct: 269 LTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGVNTLFNGL 317
|
Length = 560 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
L+Y E+ + + + + +R+ GV PGDR G+ + + A+ A YVPL +
Sbjct: 12 TLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSY 71
Query: 137 GANAVEFIINHAEVSI 152
A +++++ AE ++
Sbjct: 72 PAERLQYMLEDAEPAL 87
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 23/253 (9%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN-SQAITYVPLYDTLG 137
TY++ A + A+ + GV PGDR G N + A + S A+ + + L
Sbjct: 41 TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHT-INPRLF 99
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +I+NHAE +P + + P+C + + ++ + A +
Sbjct: 100 PEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQC----PNVKGWVAMTDAAHLPAGSTPLL 155
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV----AEVLSVD 253
C+ E + D + P + S++ YTSGTTG PKG + ++++ V L D
Sbjct: 156 CY--ETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALP-D 212
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
M S D +P+ H+ + G + G D + L E I+
Sbjct: 213 AM------GLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVL-PGPDLDGKSLYELIEA 265
Query: 311 LKPTMFSGVPRVY 323
+ T +GVP V+
Sbjct: 266 ERVTFSAGVPTVW 278
|
Length = 539 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
DG V + TY E+ R S + + G+ GDR GIY PE ++A+ A
Sbjct: 2 DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQE 157
VP++ G +AV + AE + +
Sbjct: 59 AVPIFSGFGPDAVATRLQDAEAKVLITAD 87
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 29/195 (14%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y E+ A R + RGV P G+ E ++ + A YVPL
Sbjct: 3083 LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYP 3142
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ + + Q + + + L + E
Sbjct: 3143 EERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDL---------------DRGDENYA-- 3185
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
E + T+ N++ ++YTSG+TG+PKGV + + A+ + + Q +
Sbjct: 3186 ----EANPAIRTM--------PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG 3233
Query: 258 VTGKVCSEEDTYFSF 272
+ + T FSF
Sbjct: 3234 LGVGDRVLQFTTFSF 3248
|
Length = 5163 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 1e-06
Identities = 12/39 (30%), Positives = 28/39 (71%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259
+++ ++YTSG+TG PKGV++ ++ +V + + + + +T
Sbjct: 94 DLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLT 132
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTYQ++ + + R + ++ R + +YG P ++A Y+P+ ++
Sbjct: 26 LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +E II A + ++ ++ S ++AE G
Sbjct: 86 SERIEMIIEAAGPE-LVIHTAELSIDAVGTQI-------------ITLSALEQAETSG-- 129
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
G + + K N I YTSG+TG PKGV
Sbjct: 130 ----------GPVSFDHAVKGDDNYYII-YTSGSTGNPKGV 159
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
T+ E+ + + R + ++ GV GDR + PE + C ++P LG
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 139 NAVEFIINHAE 149
+ + + A
Sbjct: 62 KDIRYRLERAG 72
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 27/161 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY ++ + + + + S + ++G PE + Y+P+ +
Sbjct: 28 LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSP 87
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A +E II A+ S+ E IL +++ +
Sbjct: 88 AERIEMIIEVAKPSLIIATEELPLEILGI---------PVITLDELK------------- 125
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
+ F D + K N I +TSGTTG+PKGV
Sbjct: 126 ----DIFATGNPYDFDHAVKGDDNYYII-FTSGTTGKPKGV 161
|
Length = 503 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
+TY+E++ RF + ++S GV GDR IY PE IAM AC
Sbjct: 89 ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
+TY+E+Y RF + ++S GV GDR IY PE IAM AC
Sbjct: 79 ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 7e-06
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 11/182 (6%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+T+ E+ +A+R+ GV PGDR Y N P+ ++AM A S + G
Sbjct: 115 VTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFG 174
Query: 138 ANAVEFIINHAEVSIAFVQE-----NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
A V E + F + K + L T+ + ++ +E E
Sbjct: 175 ARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETE 234
Query: 193 ELGV-SCFSWEEFL---QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
+ E+F Q L E P + I+++SGTTG PK +V + + +
Sbjct: 235 APKIDGALDLEDFTAAAQAAELVFEQLP--FDHPLWILFSSGTTGLPKCIVHSAGGTLVQ 292
Query: 249 VL 250
L
Sbjct: 293 HL 294
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 31/198 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ A R A+ +RGV P GI E ++ + A YVPL
Sbjct: 4577 LTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYP 4636
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ + ++ Q + +L LP ++S E+
Sbjct: 4637 RERLAYMMEDSGAALLLTQSH----LLQRLP----------IPDGLASLALDRDED---- 4678
Query: 198 CFSWEEFLQLGTLDCELPPKKKT---NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
WE F P + N++ ++YTSG+TG PKGV +++ ++V + + +
Sbjct: 4679 ---WEGF-------PAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGE 4728
Query: 255 MFVVTGKVCSEEDTYFSF 272
+ +T + FSF
Sbjct: 4729 RYELTPDDRVLQFMSFSF 4746
|
Length = 5163 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-05
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 67 VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
+ G+ GP L++ E+ +A+R+ GV PGDR Y N PE ++AM A S
Sbjct: 104 IFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATAS 161
|
Length = 655 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 32/204 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRC--GIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
+++E + +A+R+R ++P G+ N PE+ + + A I V L T
Sbjct: 29 TSWREHIRGSAARAAALRAR-LDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPT 87
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
A+ I HA+ + + + P V NV S
Sbjct: 88 RRGAALARDIAHADCQLVLTESAHAELLDGLDPG--------VRVINVDSPA-------- 131
Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIM--YTSGTTGEPKGVVLTNQAIVAEVLSVD 253
W + L D E P + M +TSGT+G+PK V T++ + + + +
Sbjct: 132 -----WADELA-AHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLA 185
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
Q F + +D + +PL H
Sbjct: 186 QRFGL-----GPDDVCYVSMPLFH 204
|
Length = 529 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 42/238 (17%), Positives = 77/238 (32%), Gaps = 70/238 (29%)
Query: 46 WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
+A R P+ + G R+ LTY+E+ A R + + + G+ PGD
Sbjct: 18 GDLLAANAARHPDRTAVVDGPRR-----------LTYRELDAAVDRLAAGLLALGIGPGD 66
Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163
R + N E++I A V A+ + +E + A++ ++
Sbjct: 67 RVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSE-AKAYIIADRFSG- 124
Query: 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIS 223
+A ++ +E ++ QL
Sbjct: 125 --------------FDYAALARELLEELPDVA--------LFQL---------------- 146
Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV--TGKVC--SEEDTYFSFLPLAH 277
+ GTTG PK + T+ D ++ + + C Y + LP AH
Sbjct: 147 ----SGGTTGLPKLIPRTH---------NDYLYSARASAEACGLDPGTVYLAVLPAAH 191
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC----SEEDTYFSFLPLA 276
+ I +TSGTTG PKGV +++ A++ + L+ K+ E+D Y PL
Sbjct: 173 DAVLICFTSGTTGRPKGVTISHSALIVQSLA---------KIAIVGYGEDDVYLHTAPLC 223
Query: 277 HI 278
HI
Sbjct: 224 HI 225
|
Length = 563 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 20/117 (17%)
Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
+ ++YTSGTTG PKG ++ + V + D ++ +PL H
Sbjct: 90 AALIYTSGTTGLPKGCAISWRR-----TLVTSNPLSHDLNLQFPDRTYTCMPLYHGTAAF 144
Query: 283 IET-HCIHKGCSIG---------FWRGDVR----YLMEDIQELKPTMFSGVPRVYDR 325
+ +C+ G ++ FW+ DVR +++ + EL + + P YDR
Sbjct: 145 LGLCYCLGSGGTLCLSRKFSASQFWK-DVRDSEATIIQYVGELCRYLLATPPSPYDR 200
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 204 FLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM-- 255
+++ LD + P+ + + + YTSG+T P GV+++++ ++A + +Q+
Sbjct: 138 VIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA---NFEQLMS 194
Query: 256 --FVVTGKVCSEEDTYFSFLPLAH 277
F TG V + T S+LP H
Sbjct: 195 DYFGDTGGVPPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
I YTSGTTG PKG + T++ ++A + +T + +FLPL H+
Sbjct: 89 IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLT-----PDSVLLAFLPLFHV 137
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 24/161 (14%)
Query: 83 VYDAAIRFGSAM-RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAV 141
+ I + M +RG+ GD + N ++ A + ++P+ L A+ V
Sbjct: 32 EFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEV 91
Query: 142 EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201
+I+ A + V E + L IV A + ++
Sbjct: 92 AYILGDAGAKLLLVDEE-----FDAIV--ALETPKIVIDAAAQADSRR------------ 132
Query: 202 EEFLQLGTLDC-ELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
L G L+ T++ +MYTSGTT PKGV+ +
Sbjct: 133 ---LAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHS 170
|
Length = 497 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIV 246
I++TSG+TG PKGV++ AIV
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIV 624
|
Length = 1296 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 9/44 (20%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSV---------DQMFVVT 259
++YTSG+TG+PKGV ++++A+V +LS+ D++ VT
Sbjct: 98 VIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVT 141
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 4e-05
Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 22/187 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
T+ + YD R +++ S + D + N P A P+ L
Sbjct: 40 FTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLD 99
Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFAN-VSSSQKKEAEE 193
A ++ I+ HA+ I FV + P +L L L V F + + ++ +EE
Sbjct: 100 ATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEE 159
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM---------YTSGTTGEPKGVVLTNQA 244
L +E +Q G E P + I YTSGTT +PKGVV++++
Sbjct: 160 L-----DYECLIQRG----EPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRG 210
Query: 245 IVAEVLS 251
LS
Sbjct: 211 AYLSTLS 217
|
Length = 579 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279
+++ + YT GTTG KG +LT++ +VA +L + + + + + LPL HIY
Sbjct: 208 DVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRAL--MGSNLNEGCEILIAPLPLYHIY 264
|
Length = 562 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 55/240 (22%)
Query: 78 LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
+TY EV + + A+ + G+ PGD + N P ++
Sbjct: 4 VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFL-------------------- 43
Query: 137 GANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKK---EAE 192
+ + AF+ N + S+L C RCC + +V+ + + ++
Sbjct: 44 ---WIWLGLAKLGCPTAFLNTNIRSGSLLHCF-RCC-GARVLVADPELLEAVEEILPALR 98
Query: 193 ELGVSCF---------SWEEFLQL--GTLDCELPPKKKTNISTIM------YTSGTTGEP 235
+GV F L D E P + +I YTSGTTG P
Sbjct: 99 AMGVRVFYLSHTSPPEGVISLLAKVDAASD-EPVPASLRSGVSIRSTALYIYTSGTTGLP 157
Query: 236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSI 294
K +++ VL M + G + +D ++ LPL H ++ CI G ++
Sbjct: 158 KAARISHL----RVLQCSGMLSLCG--VTADDVVYTTLPLYHSSGALLGIVGCIGLGATL 211
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
T+++++D R + +RS GV GDR IY E AM AC
Sbjct: 85 YTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC 129
|
Length = 629 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
LTY++++ F SA+R+ GV GDR IY E + AM AC
Sbjct: 84 LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLAC 128
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 47/233 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLY- 133
+TY E+ + + + ++SRG+ G R I N ++ +A+ A V PLY
Sbjct: 49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108
Query: 134 ---------DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK-TIVSFANV 183
D+ GA A+ + N A + + + ++ L K IV+F V
Sbjct: 109 PRELEHQLKDS-GAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNF--V 165
Query: 184 SSSQKK--EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
KK A L + + L G + +++ + YT GTTG KG L
Sbjct: 166 VRRVKKMVPAWSLP-GHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATL 224
Query: 241 TNQAIVAEVLS--------------VDQMFVVTGKVCSEEDTYFSFLPLAHIY 279
++ IVA VL DQ+ V LPL HI+
Sbjct: 225 LHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA------------LPLYHIF 265
|
Length = 557 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 32/206 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + + +RGV P R + N + +IA+ A + + L
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 138 ANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEEL 194
+ +I E++ A + + + +I L L +V L
Sbjct: 89 PAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDLV--------------GL 134
Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
G + E PP++ + + YTSGTTG PKG V+ +A + VL
Sbjct: 135 GEPESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVL---- 182
Query: 255 MFVVT--GKVCSEEDTYFSFLPLAHI 278
F+ T G + +PL H+
Sbjct: 183 -FMSTQAGLRHGRHNVVLGLMPLYHV 207
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 7e-05
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276
++YTSG+TG+PKGVV+T++ I + + + + D F +A
Sbjct: 104 VIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIR-----PGDRVLQFASIA 150
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF 272
+ + + I++TSG+ G PKGVVL+++ ++A V ++ S ED F+
Sbjct: 787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLA------NRAQVAARIDFSPEDKVFNA 840
Query: 273 LPLAH 277
LP+ H
Sbjct: 841 LPVFH 845
|
Length = 1140 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 54/197 (27%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ D + + ++ GV GD IY E IAM AC +G
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACAR-----------IG 169
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL------------YLKTIVSFANVSS 185
A H+ V F E+ I+ C P+ + LK IV A S
Sbjct: 170 A-------VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDES 222
Query: 186 SQKKEAEELGVSCFS---------------------WEEFLQLGTLDCELPPKKKTNIST 224
+ K +G+ C + W++ + CE+ +
Sbjct: 223 A--KNGVSVGI-CLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLF 279
Query: 225 IMYTSGTTGEPKGVVLT 241
++YTSG+TG+PKGV+ T
Sbjct: 280 LLYTSGSTGKPKGVLHT 296
|
Length = 666 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
LTY+E+ + A R +R+RGV PGD I PE ++A+ A+ YVPL
Sbjct: 13 LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAI-----LAVLKAGAAYVPL 67
Query: 133 YDTLGANAVEFIINHAEVSIAFVQ 156
A + +++ + +
Sbjct: 68 DPAYPAERLAYMLEDSGAKLLLTD 91
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 25/231 (10%)
Query: 55 RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE 114
P+ L + G V +Y+E+ R + GV GD N E
Sbjct: 34 NCPDKPALTAYRDGHGAV---RRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWE 90
Query: 115 WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI--------AFVQENKIPSILSC 166
+ AC PL + F++NHA+ + F + S
Sbjct: 91 FTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSK 150
Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
LP L+ +V V ++ + + ++ + P +++ ++
Sbjct: 151 LP----ALRQVV----VIDGDGDDSFDRVLMTPERDDTPDAAAI-LAGPRPSPDDVTQLI 201
Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
YTSGTTGEPKGV+ T + + + + + D P+AH
Sbjct: 202 YTSGTTGEPKGVMHTANTLFSNIHPYAERLEL-----GGGDVILMASPMAH 247
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 32/206 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y+++ A +A+++R GDR + + P+++ A C + VP Y
Sbjct: 41 LSYRDLDLRARTIAAALQARAS-FGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP--- 96
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
E + QE + I PR L T+ + + EEL +
Sbjct: 97 ----------PESARRHHQERLLSIIADAEPRLLL---TVADLRD----SLLQMEELAAA 139
Query: 198 CFSWEEFLQLGTLDCEL------PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
+ E L + TLD L P + +I+ + YTSG+T PKGV +++ +VA
Sbjct: 140 --NAPELLCVDTLDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQL 197
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAH 277
+ F G + +D S+LPL H
Sbjct: 198 IRHGF---GIDLNPDDVIVSWLPLYH 220
|
Length = 4334 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 57/264 (21%), Positives = 97/264 (36%), Gaps = 44/264 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ + + + + GV GD + N +++A+ A + + L +T G
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAG-KVGARIILLNT-G 132
Query: 138 ANAVEFIINHAEVSI-----AFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
+ + AEV+ A V +++ +LS LP L+ +
Sbjct: 133 FSGPQL----AEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGG----------NPD 178
Query: 193 ELGVSCFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVV---LTNQAIVAE 248
+ S + E L PK ++ TSGTTG PKG + A +A
Sbjct: 179 DDEPSGSTDETLDDLIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAG 238
Query: 249 VLS-----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVR 302
+LS + ++ + F AH+ + G ++ R D
Sbjct: 239 LLSRVPFRAGETTLLPAPM-------FHATGWAHL--TLAMAL----GSTVVLRRRFDPE 285
Query: 303 YLMEDIQELKPTMFSGVPRVYDRI 326
+EDI + K T VP + RI
Sbjct: 286 ATLEDIAKHKATALVVVPVMLSRI 309
|
Length = 549 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 54/244 (22%)
Query: 51 DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110
++A R P+ L + + + ++Y E+ A R+ +RGV GD +
Sbjct: 45 EAAARHPDRPAL----LFEDQS-----ISYAELNARANRYAHWAAARGVGKGDVVALLME 95
Query: 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFI------------INHAEVSIAFVQEN 158
N PE++ A LGA V + +N + V E
Sbjct: 96 NRPEYLAAWLGLAK-----------LGA-VVALLNTQQRGAVLAHSLNLVDAKHLIVGEE 143
Query: 159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKK 218
+ + + + +E+ P
Sbjct: 144 -------LVEAF----EEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPAS 192
Query: 219 KTNIS---TIMY--TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
++ ++ T Y TSGTTG PK V+++ L F ++ + +D + L
Sbjct: 193 RSGVTAKDTAFYIYTSGTTGLPKAAVMSH----MRWLKAMGGFGGLLRL-TPDDVLYCCL 247
Query: 274 PLAH 277
PL H
Sbjct: 248 PLYH 251
|
Length = 600 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
L+Y E A R+ A+R+ GV GD + N PE+++A A
Sbjct: 4 LSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALA 49
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 49/180 (27%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY+E+ + + R RS G+ GD I+ N ++ A + Y + L
Sbjct: 25 VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLT 84
Query: 138 ANAVEFIIN----------HAEVSIAFVQENKIPSILSCLPRCCLYLKT-----IVSFAN 182
+I++ A++ +A + P + L + V +A
Sbjct: 85 PAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRL----VLDGDGELEGFVGYAE 140
Query: 183 VSSSQKK---EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
+ E LG ++Y+SGTTG PKG+
Sbjct: 141 AVAGLPATPIADESLGTD---------------------------MLYSSGTTGRPKGIK 173
|
Length = 511 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 6/163 (3%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++ E+ A R + + GV PGD + N + A A VP+
Sbjct: 12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +I+ + + + + + S LP L ++ + ++++ + L
Sbjct: 72 PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130
Query: 198 CFS--WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
+ WE +L + PP + +++YTSGTTG PKGV
Sbjct: 131 AGAIDWEGWLAQQEP-YDGPPVPQP--QSMIYTSGTTGHPKGV 170
|
Length = 509 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVA 247
I++TSG+TG+PKGV +++ + +
Sbjct: 102 ILFTSGSTGKPKGVQISHANLAS 124
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 225 IMYTSGTTGEPKGVVLT 241
I+YTSGTTG+PKG V T
Sbjct: 105 IIYTSGTTGKPKGTVHT 121
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 47 QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
+ A+R P+ + G LTY E+ A R + +R+ GV P R
Sbjct: 3 ELVEAQAERTPDAIAVVCGDES-----------LTYAELNRRANRLAARLRAAGVGPESR 51
Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 156
G+ P+ ++A+ A YVPL + +I+ A +
Sbjct: 52 VGVCLRRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTD 103
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 45/186 (24%)
Query: 76 VW----LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
VW L Y E++ A R +R +GV P I P+ ++ + A YVP
Sbjct: 1151 VWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVP 1210
Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
L A + +++ + V + Q +L LP+ A
Sbjct: 1211 LDPDYPAERLAYMLADSGVELLLTQS----HLLERLPQ---------------------A 1245
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKT-------NISTIMYTSGTTGEPKGVVLTNQA 244
E GVS + L +L + P + N++ ++YTSG+TG+PKGV T+ A
Sbjct: 1246 E--GVSA------IALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAA 1297
Query: 245 IVAEVL 250
+ AE L
Sbjct: 1298 L-AERL 1302
|
Length = 4334 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 228 TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET-H 286
T GTTG PK +++ VA + + D + LPL H+ I+
Sbjct: 10 TGGTTGAPKLARHSHRNEVANAWMAALLSGLG-----PGDVLLNGLPLFHVGGAIVTGLA 64
Query: 287 CIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVY 323
+ +G ++ +R V + ++ + T+ S VP V
Sbjct: 65 PLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL 108
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 32/209 (15%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L Y+E+ + +R++ V+ G R + N PE +++ AC V L
Sbjct: 42 LRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLP 101
Query: 138 ANAVEF---IINHAEVSIA---FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
A+E I + A +A + + +P L +P + + + + S A
Sbjct: 102 IAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLA 161
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EV 249
G+ D +++TSGTTGEPK V+L N+ A ++
Sbjct: 162 GNAD-----------QGSEDP----------LAMIFTSGTTGEPKAVLLANRTFFAVPDI 200
Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
L + + VT V +T +S LP HI
Sbjct: 201 LQKEGLNWVTWVV---GETTYSPLPATHI 226
|
Length = 540 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 47/216 (21%), Positives = 78/216 (36%), Gaps = 38/216 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
TY+E+ R + GV GD N E+ + AC+ PL
Sbjct: 56 FTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFR 115
Query: 138 ANAVEFIINHAEVSIAFV--------QENKIPSILSCLPRCCLYLKTIV--------SFA 181
+ F++ HAE + V + LP L+ +V SF
Sbjct: 116 ERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPA----LRHVVVVGGDGADSFE 171
Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
+ + WE+ + L P +++ ++YTSGTTGEPKGV+ T
Sbjct: 172 ALLITPA------------WEQEPDAPAILARLRPGPD-DVTQLIYTSGTTGEPKGVMHT 218
Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
++A ++ + + +D P+AH
Sbjct: 219 ANTLMANIVPYAERLGLGA-----DDVILMASPMAH 249
|
Length = 547 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 27/118 (22%)
Query: 222 ISTIMYTSGTTGEPKGVV-------LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
I+ +YTSGTTG+PKGV+ +A E+L + D FS
Sbjct: 93 IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGL-----------QPGDRIFSSSK 141
Query: 275 LAHIYDQIIETHCIHKGCSIGFW------RGDVRYLMEDIQELKPTMFSGVPRVYDRI 326
L Y + + G +++ + +PT+ GVP +Y +
Sbjct: 142 LFFAYGLG---NSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRAL 196
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 29/194 (14%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
G + LTY E + A+ RG++ I N E + A + Y P+
Sbjct: 65 GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPV 124
Query: 133 ---YDTLGAN--AVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYLKTIVSFANVSS 185
Y + + + ++ + F + ++ + +P ++ +
Sbjct: 125 SPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPAD---VEVVAV------ 175
Query: 186 SQKKEAEELGVSCFSWEEFLQ---LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT- 241
G + + L +D I+ ++TSG+TG PK V+ T
Sbjct: 176 ----RGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTH 231
Query: 242 -----NQAIVAEVL 250
NQ ++A+
Sbjct: 232 RMLCANQQMLAQTF 245
|
Length = 614 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 12/15 (80%), Positives = 15/15 (100%)
Query: 225 IMYTSGTTGEPKGVV 239
I+YTSG+TG+PKGVV
Sbjct: 230 ILYTSGSTGKPKGVV 244
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 32/118 (27%)
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
+YTSGTTG PK +++++ L +F G + +D + LPL H +
Sbjct: 87 IYTSGTTGLPKAAIMSHR----RWLRAGAVFGGLGLL-KPDDVLYLCLPLYHSNALTVGW 141
Query: 286 H-CIHKGCSI---------GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333
+ G S+ FW D++ T F Y G +C+
Sbjct: 142 SSALAAGASLALRRKFSASQFWP--------DVRRYGATAF---------QYVGELCR 182
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 17/58 (29%)
Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQM-FVVTGKVC------SEEDTYFSFLPLAH 277
+TSGTTG PK VLT+ QM FV+T + +E+D PL+H
Sbjct: 170 FTSGTTGRPKAAVLTH----------GQMAFVITNHLADLMPGTTEQDASLVVAPLSH 217
|
Length = 528 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 13/117 (11%)
Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
P +++ +T GTTG PK T+ VA + + DT F LP
Sbjct: 208 RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLG-----PGDTVFCGLP 262
Query: 275 LAHIYDQI-IETHCIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVY 323
L H+ + + +G + +RG + + ++ + SGVP VY
Sbjct: 263 LFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVY 319
|
Length = 632 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 272
N++ ++YTSG+TG PKG + A+V + + + + ++ + T F+F
Sbjct: 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAF 1770
|
Length = 3956 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 28/170 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRC-GIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
L+Y E+ A R + + GV P D G+ E I+A+ A YVPL
Sbjct: 3121 LSYAELNRRANRLAHRLIAIGVGP-DVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEY 3179
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
+ ++I + V + Q +L LP A ++ L +
Sbjct: 3180 PRERLAYMIEDSGVKLLLTQA----HLLEQLPA----------PAGDTA--------LTL 3217
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
+ + + N++ ++YTSG+TG+PKGV + + A+
Sbjct: 3218 DRLDLNGYSE----NNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALA 3263
|
Length = 3956 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 220 TNISTIMYTSGTTGEPKGVVL-TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271
S I+YTSGTTG+PKGV T VA S+D +F GK +T+F
Sbjct: 233 NEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF--GGK---AGETFFC 280
|
Length = 629 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276
K +++ I++TSGT PKGV LT+ ++A + + F E+D SFLP
Sbjct: 180 KDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPK-----EDDVMMSFLPPF 234
Query: 277 HIY 279
H Y
Sbjct: 235 HAY 237
|
Length = 539 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG----KVCSE-EDTYFSFLPL 275
+I+ + YT GTTG KG +LT+ +VA +L V G + E ++ + LPL
Sbjct: 208 DIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPL 267
Query: 276 AHIY 279
HIY
Sbjct: 268 YHIY 271
|
Length = 562 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 341 | |||
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 99.98 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 99.98 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.98 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 99.98 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.98 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.98 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 99.98 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 99.98 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 99.97 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.97 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 99.97 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.97 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 99.97 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.97 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 99.97 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.97 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.97 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 99.96 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.96 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 99.96 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 99.96 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 99.94 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.9 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.75 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.59 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.46 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.42 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.3 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.12 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 98.85 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 98.48 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 96.72 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.21 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 95.01 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 90.75 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 90.53 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 90.01 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 89.47 | |
| PRK09274 | 552 | peptide synthase; Provisional | 86.51 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 85.99 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 85.3 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 84.83 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 84.5 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 84.15 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 83.89 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 83.76 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 82.91 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 82.75 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 82.75 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 82.55 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 82.41 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 81.9 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 81.75 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 81.51 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 81.51 | |
| PLN02654 | 666 | acetate-CoA ligase | 81.43 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 81.17 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 81.1 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 81.02 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 80.46 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 80.42 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 80.4 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 80.28 |
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=351.95 Aligned_cols=333 Identities=79% Similarity=1.332 Sum_probs=266.2
Q ss_pred CCccceeeccCCCCCCCCCCCCCcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeH
Q 019388 1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTY 80 (341)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty 80 (341)
|.+.||+.++|..+.+...|..+++||+......+...+....|+.++|.+.++++|+++|+.+....++..+.++++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty 80 (660)
T PLN02861 1 MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTY 80 (660)
T ss_pred CCccceeeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEH
Confidence 56789999999999888999999999999877766555567789999999999999999999763111333466789999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh
Q 019388 81 QEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI 160 (341)
Q Consensus 81 ~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 160 (341)
+||.++++++|++|.++|+++||+|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..
T Consensus 81 ~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~ 160 (660)
T PLN02861 81 KEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI 160 (660)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred hhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceee
Q 019388 161 PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~ 240 (341)
..+..........++.++.++.............+....+|+++...+..........++++++|+|||||||.||||++
T Consensus 161 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~l 240 (660)
T PLN02861 161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL 240 (660)
T ss_pred HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEE
Confidence 54433332222346777777643211110011112234567777654422222334568999999999999999999999
Q ss_pred ecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccc
Q 019388 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVP 320 (341)
Q Consensus 241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P 320 (341)
||++++.++......+......+..+|++++.+|++|.+|+...+.++..|+++++.++++..+++.|++++||+++++|
T Consensus 241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP 320 (660)
T PLN02861 241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVP 320 (660)
T ss_pred ecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeech
Confidence 99999998877655431111124678999999999999998876668999999999877999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 019388 321 RVYDRIYTGTICQ 333 (341)
Q Consensus 321 ~~~~~l~~~~~~~ 333 (341)
++++.|++.+...
T Consensus 321 ~~~~~l~~~~~~~ 333 (660)
T PLN02861 321 RVYDRIYTGIMQK 333 (660)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998765443
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=338.04 Aligned_cols=326 Identities=53% Similarity=0.975 Sum_probs=252.4
Q ss_pred eeccCCCCCCCCCCCCCcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHH
Q 019388 7 VKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDA 86 (341)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~ 86 (341)
+-+++........|.++++||+......++.......|+.++|++.++++|+++|+.+....++..+.+.++||+||.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~ 88 (666)
T PLN02614 9 FQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDI 88 (666)
T ss_pred EEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHH
Confidence 34445555567788999999998777666654456679999999999999999999864110222345678999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhh
Q 019388 87 AIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166 (341)
Q Consensus 87 ~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 166 (341)
++++|++|.++|+++||+|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++....+...
T Consensus 89 v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 168 (666)
T PLN02614 89 VIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKT 168 (666)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988655444333
Q ss_pred CcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCC-CCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHH
Q 019388 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI 245 (341)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l 245 (341)
.......++.++.++.............+.....+++++..+. .........++++++|+|||||||.||||++||+++
T Consensus 169 ~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl 248 (666)
T PLN02614 169 CPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESI 248 (666)
T ss_pred cccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHH
Confidence 2222223566777754321110001111223456777765431 112223346789999999999999999999999999
Q ss_pred HHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHH
Q 019388 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDR 325 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 325 (341)
+..+......+.....++..+|++++++|++|.+++...+..+..|+++++.++++..+++.|++++||+++++|++++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~ 328 (666)
T PLN02614 249 VTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDR 328 (666)
T ss_pred HHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHH
Confidence 98877654432111114678899999999999999976666788999999987799999999999999999999999999
Q ss_pred HHHHHHH
Q 019388 326 IYTGTIC 332 (341)
Q Consensus 326 l~~~~~~ 332 (341)
|++.+..
T Consensus 329 l~~~~~~ 335 (666)
T PLN02614 329 VYSGLQK 335 (666)
T ss_pred HHHHHHH
Confidence 9876544
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=333.81 Aligned_cols=317 Identities=35% Similarity=0.599 Sum_probs=254.1
Q ss_pred ceeeccCCCCCCCCCCCCCcceeccccCCCCC---CCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHH
Q 019388 5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLL---ESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQ 81 (341)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~ 81 (341)
++++++ .+..++.+.+||+........ ..+....+++++|++.++++|+++++.+....++..+.++.+||+
T Consensus 8 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~ 82 (651)
T PLN02736 8 YSVVLP-----EKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYG 82 (651)
T ss_pred cceeCC-----CCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHH
Confidence 666655 445568899999875553332 234566799999999999999999996431013334567889999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh
Q 019388 82 EVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161 (341)
Q Consensus 82 el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 161 (341)
||.++++++|++|.++|+++||+|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+
T Consensus 83 el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~ 162 (651)
T PLN02736 83 EAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLN 162 (651)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCC-CCCCCCCCCCCCeEEEEeCCCCCCCccceee
Q 019388 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~ 240 (341)
.+..... ..+.++.++.++.............+.....|+++..... .........++++++|+|||||||.||||++
T Consensus 163 ~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~l 241 (651)
T PLN02736 163 TLLSCLS-EIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVL 241 (651)
T ss_pred HHHHHhh-cCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEE
Confidence 5544433 2356667776653221111111112234567887776542 1222334567999999999999999999999
Q ss_pred ecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccc
Q 019388 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVP 320 (341)
Q Consensus 241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P 320 (341)
||+++..++......+ ++..+|++++.+|++|++|+..++.++..|+++++.++++..+++.|+++++|+++++|
T Consensus 242 sh~~l~~~~~~~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP 316 (651)
T PLN02736 242 THGNLIANVAGSSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVP 316 (651)
T ss_pred ecHHHHHHHHHHHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecch
Confidence 9999999988877766 78889999999999999999888889999999999888899999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 019388 321 RVYDRIYTGTIC 332 (341)
Q Consensus 321 ~~~~~l~~~~~~ 332 (341)
++++.|.+.+..
T Consensus 317 ~~~~~l~~~~~~ 328 (651)
T PLN02736 317 RLYNRIYDGITN 328 (651)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=318.81 Aligned_cols=316 Identities=41% Similarity=0.669 Sum_probs=274.3
Q ss_pred CcceeccccC--CCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCC
Q 019388 23 GPVYRCIYAK--DGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (341)
Q Consensus 23 ~~~~r~~~~~--~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~ 100 (341)
++++|+...+ ..++..+....|++++|.+.+..+++.+++......+ ..++|+++||+|..+++..++..|+++|++
T Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~ 131 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK 131 (691)
T ss_pred CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence 4789998884 4456667899999999999999999999999873323 678999999999999999999999999999
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEc-CCChhhHHhhCcc-cCCcccEEE
Q 019388 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ-ENKIPSILSCLPR-CCLYLKTIV 178 (341)
Q Consensus 101 ~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~~~~~i 178 (341)
+++.|+|++.|++||++..+||...|.+.|||..+.+++.+.++++.+...++|+| ++..+.+.+.... ..+.++.++
T Consensus 132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI 211 (691)
T KOG1256|consen 132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII 211 (691)
T ss_pred CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999 4555666655544 357899999
Q ss_pred EeccCCchhhHHhhhhCccceeHHHHHHcC-CCCCCC-CCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhh
Q 019388 179 SFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~ 256 (341)
.+++.........++.++..++|+++.+.+ ...... .+..+++.|.|+|||||||.||||++||+|+.+.+.......
T Consensus 212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~ 291 (691)
T KOG1256|consen 212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS 291 (691)
T ss_pred EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence 999999888888888899999999999988 333333 477899999999999999999999999999999766432222
Q ss_pred hhccc-cCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHhhh
Q 019388 257 VVTGK-VCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCT 335 (341)
Q Consensus 257 ~~~~~-~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 335 (341)
..... ....+|++++++||.|++..++-...+..|+.+.+..+|+..+.+.|++.+||.+.+||.+|+++.+.+++.+.
T Consensus 292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~ 371 (691)
T KOG1256|consen 292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ 371 (691)
T ss_pred hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence 11111 22347999999999999999987777799999999999999999999999999999999999999999999988
Q ss_pred hhcc
Q 019388 336 HKLT 339 (341)
Q Consensus 336 ~~~~ 339 (341)
++..
T Consensus 372 ~sgf 375 (691)
T KOG1256|consen 372 KSGF 375 (691)
T ss_pred cchH
Confidence 8753
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=325.59 Aligned_cols=328 Identities=47% Similarity=0.873 Sum_probs=253.5
Q ss_pred eeccCCCCCCCCCCCCCcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHH
Q 019388 7 VKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDA 86 (341)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~ 86 (341)
+++.+.-.....+|.++++||+......++..++...|+.++|.+.++++|+++++.+....++..+++.++||+|+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~ 85 (660)
T PLN02430 6 AQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEE 85 (660)
T ss_pred eeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHH
Confidence 44543333334678899999998766555545567889999999999999999999764211233456778999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhh
Q 019388 87 AIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166 (341)
Q Consensus 87 ~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 166 (341)
++++|++|.+.|+++||+|+++++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++..........
T Consensus 86 v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~ 165 (660)
T PLN02430 86 VLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEP 165 (660)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987644333222
Q ss_pred CcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCC-CCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHH
Q 019388 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI 245 (341)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l 245 (341)
.....+.++.++.++.............+....+|+++...+. .........++++++++|||||||.||||++||+++
T Consensus 166 ~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~ 245 (660)
T PLN02430 166 DCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAV 245 (660)
T ss_pred hcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHH
Confidence 2222245677777765332111111112233567888775542 222223346789999999999999999999999999
Q ss_pred HHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHH
Q 019388 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDR 325 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 325 (341)
..++......+.....+++.+|++++.+|++|.++....+.++..|+++++...++..+++.|++++||++.++|.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~ 325 (660)
T PLN02430 246 ATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFER 325 (660)
T ss_pred HHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHH
Confidence 98877653321111114678899999999999999987666789999999887788999999999999999999999999
Q ss_pred HHHHHHHhh
Q 019388 326 IYTGTICQC 334 (341)
Q Consensus 326 l~~~~~~~~ 334 (341)
+.+...+..
T Consensus 326 l~~~i~~~~ 334 (660)
T PLN02430 326 IHEGIQKAL 334 (660)
T ss_pred HHHHHHHHH
Confidence 988765443
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=323.87 Aligned_cols=304 Identities=23% Similarity=0.413 Sum_probs=237.4
Q ss_pred CCCcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHh---C
Q 019388 21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS---R 97 (341)
Q Consensus 21 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~---~ 97 (341)
.++.+||....... .......++.++|.+.++++|+++|+.+. + ....|+++||+|+.+++.++|++|.+ +
T Consensus 41 ~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~ 114 (746)
T PTZ00342 41 NESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYEGK 114 (746)
T ss_pred CCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHhhc
Confidence 55669996665544 33356889999999999999999999753 2 22246899999999999999999997 4
Q ss_pred CCCCC-----------CeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhh
Q 019388 98 GVNPG-----------DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166 (341)
Q Consensus 98 g~~~~-----------~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 166 (341)
|+++| |+|+++++|+++|+++.+||+++|++++|+++.++.+++.++|++++++++|++.+..+.+...
T Consensus 115 Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~ 194 (746)
T PTZ00342 115 GIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLER 194 (746)
T ss_pred CCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHh
Confidence 99998 8999999999999999999999999999999999999999999999999999987766665544
Q ss_pred CcccCCcccEEEEeccCCch------------------hhH------------------------------------H--
Q 019388 167 LPRCCLYLKTIVSFANVSSS------------------QKK------------------------------------E-- 190 (341)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~------------------~~~------------------------------------~-- 190 (341)
.. ..+.++.+++++..... .+. .
T Consensus 195 ~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (746)
T PTZ00342 195 KN-ELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKE 273 (746)
T ss_pred hc-cCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHH
Confidence 33 33677888888653210 000 0
Q ss_pred -hhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEE
Q 019388 191 -AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 269 (341)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (341)
....+.....|+++..............++++++|+|||||||.||||++||+|+++++....... .......|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~d~~ 350 (746)
T PTZ00342 274 KAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNPKTH 350 (746)
T ss_pred HhhcCCCEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCCCeE
Confidence 000111223344443332112223345679999999999999999999999999999887654321 0012356899
Q ss_pred EEecChHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHhh
Q 019388 270 FSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQC 334 (341)
Q Consensus 270 l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 334 (341)
++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+++.|.+.+....
T Consensus 351 ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~ 415 (746)
T PTZ00342 351 LSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEI 415 (746)
T ss_pred EEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHH
Confidence 99999999999988788899999999987799999999999999999999999999988765443
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=290.96 Aligned_cols=285 Identities=19% Similarity=0.271 Sum_probs=241.5
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcC
Q 019388 31 AKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110 (341)
Q Consensus 31 ~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~ 110 (341)
+..+-.+.|....|+++.++-.+++-||+.++++. ..+ .++||+|+.+.++.+|++|.++|+++||+|++..|
T Consensus 38 ~~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgp 110 (596)
T KOG1177|consen 38 YVHGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGP 110 (596)
T ss_pred ccCCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecC
Confidence 44555667888999999999999999999999876 322 57999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhh-----HHh------------hCcccCCc
Q 019388 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS-----ILS------------CLPRCCLY 173 (341)
Q Consensus 111 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~------------~~~~~~~~ 173 (341)
|+.+|+..++||.++|.+.+++||.+...+++..|++.+++++|+...+... +.+ ..++..+.
T Consensus 111 N~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~ 190 (596)
T KOG1177|consen 111 NSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPE 190 (596)
T ss_pred ChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999988853321 111 12334466
Q ss_pred ccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCCC------CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHH
Q 019388 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247 (341)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~ 247 (341)
+.+++..+++.+. .+.+.+.+++..+.. ........+++++.|.|||||||.|||+.+||.|+++
T Consensus 191 lthvi~~~ed~~~---------~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~N 261 (596)
T KOG1177|consen 191 LTHVILADEDHPL---------PGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLN 261 (596)
T ss_pred ceEEEecCCCCcC---------CCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhh
Confidence 6778877744332 246677777765521 1223445679999999999999999999999999999
Q ss_pred HHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEec--CCHHHHHHHhhhhcCcEEeccchHHH
Q 019388 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYD 324 (341)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~ 324 (341)
++.....++ ++.+++++++..|++|.+|... +++++..|+++|++. +++++.+++|.+++||.++++|+++.
T Consensus 262 na~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~ 336 (596)
T KOG1177|consen 262 NARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFV 336 (596)
T ss_pred hHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHH
Confidence 999998888 9999999999999999999776 999999999999975 39999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 019388 325 RIYTGTICQCTH 336 (341)
Q Consensus 325 ~l~~~~~~~~~~ 336 (341)
.|++..+.+.-+
T Consensus 337 Dlln~~~~~~~~ 348 (596)
T KOG1177|consen 337 DLLNIPQKQQVD 348 (596)
T ss_pred HHhcchhhccCc
Confidence 999776655443
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=310.03 Aligned_cols=306 Identities=28% Similarity=0.482 Sum_probs=237.4
Q ss_pred CcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeecc--------CC------CCcceEEEeHHHHHHHHH
Q 019388 23 GPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS--------DG------KVGPYVWLTYQEVYDAAI 88 (341)
Q Consensus 23 ~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~--------~~------~~~~~~~~Ty~el~~~~~ 88 (341)
+.+||+...........+...|+.++|.+.++++||++|+.+.... ++ ..++|.++||+|+.++++
T Consensus 38 ~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~ 117 (696)
T PLN02387 38 GYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVC 117 (696)
T ss_pred CCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHH
Confidence 3369988855333333356689999999999999999999643110 11 135678899999999999
Q ss_pred HHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCc
Q 019388 89 RFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168 (341)
Q Consensus 89 ~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 168 (341)
++|++|.++|+++|++|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+.....
T Consensus 118 ~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~ 197 (696)
T PLN02387 118 NFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISS 197 (696)
T ss_pred HHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876666554433
Q ss_pred ccCCcccEEEEeccCCchhhHH-hhhhCccceeHHHHHHcCC-CCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHH
Q 019388 169 RCCLYLKTIVSFANVSSSQKKE-AEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246 (341)
Q Consensus 169 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~ 246 (341)
..+.++.++.+++........ ..........|.++...+. .........++++++|+|||||||.||||++||++++
T Consensus 198 -~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~ 276 (696)
T PLN02387 198 -QLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIV 276 (696)
T ss_pred -ccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHH
Confidence 335678888887543211100 0111233556777765542 1222334467999999999999999999999999999
Q ss_pred HHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC----C-----HHHHHHHhhhhcCcEEe
Q 019388 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----D-----VRYLMEDIQELKPTMFS 317 (341)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~----~-----~~~~~~~i~~~~~t~~~ 317 (341)
+++......+ .++..+|++++++|++|++++...+.++..|+++.+... + +..++..+++++||++.
T Consensus 277 ~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~ 352 (696)
T PLN02387 277 ATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMT 352 (696)
T ss_pred HHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEE
Confidence 9888765432 157789999999999999999876666778887766432 1 23456789999999999
Q ss_pred ccchHHHHHHHHHHHh
Q 019388 318 GVPRVYDRIYTGTICQ 333 (341)
Q Consensus 318 ~~P~~~~~l~~~~~~~ 333 (341)
++|.+++.|.+.....
T Consensus 353 ~vP~~l~~l~~~~~~~ 368 (696)
T PLN02387 353 AVPAILDRVRDGVRKK 368 (696)
T ss_pred ehhHHHHHHHHHHHHH
Confidence 9999999998876544
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=290.35 Aligned_cols=286 Identities=28% Similarity=0.519 Sum_probs=223.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++..++.+.++.+|+..++.+. ..+.|+.+||+|+++++.++|.+|...|+++||+|+|++.|+++|+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d 87 (613)
T COG1022 13 AEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD 87 (613)
T ss_pred hhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45578999999999999998888876 4788899999999999999999999999977999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEecc----CCchhhH-Hhhhh
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN----VSSSQKK-EAEEL 194 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~-~~~~~ 194 (341)
+||+..|++.||+.++.+++++.++|+.+++++||++.+............++.+.......+ ....... .....
T Consensus 88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (613)
T COG1022 88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFP 167 (613)
T ss_pred HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccc
Confidence 999999999999999999999999999999999999997665544433332222211111111 0000000 00000
Q ss_pred CccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcccc-CCCCcEEEEec
Q 019388 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSFL 273 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~~ 273 (341)
..+...+ ............+..++|.|.|+|||||||.||||++||+|+++++..+...+ . .+++|++++++
T Consensus 168 ~~~~~~~--~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfL 240 (613)
T COG1022 168 DEGISLF--LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFL 240 (613)
T ss_pred cccchhh--hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeC
Confidence 0111111 11111112222466889999999999999999999999999999999988877 6 78999999999
Q ss_pred ChHHHHHHHH-HHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHhhhhhc
Q 019388 274 PLAHIYDQII-ETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCTHKL 338 (341)
Q Consensus 274 pl~h~~g~~~-~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 338 (341)
|+.|++..++ ....+..|+++.. ..+++.+++.+++++||.+++||.+|+.+.+..++++.+..
T Consensus 241 PlaHi~Er~~~~~~~~~~g~~~~~-~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~ 305 (613)
T COG1022 241 PLAHIFERAFEGGLALYGGVTVLF-KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAP 305 (613)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEe-cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcc
Confidence 9999999997 4444444444444 44999999999999999999999999999999999888765
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=297.89 Aligned_cols=311 Identities=26% Similarity=0.439 Sum_probs=232.3
Q ss_pred CCCCCCcceeccccCC----CCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeecc----------CCC--------Ccce
Q 019388 18 GKPSGGPVYRCIYAKD----GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS----------DGK--------VGPY 75 (341)
Q Consensus 18 ~~~~~~~~~r~~~~~~----~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~----------~~~--------~~~~ 75 (341)
..++.+++||...... .+........|+.++|.+.++++||++|+.+.... ++. .+.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (700)
T PTZ00216 40 ETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNET 119 (700)
T ss_pred CCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCc
Confidence 3445677888765443 22222245679999999999999999999875110 010 1256
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEE
Q 019388 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (341)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 155 (341)
+++||+||.++++++|+.|.++|+++||+|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 120 ~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~ 199 (700)
T PTZ00216 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVC 199 (700)
T ss_pred eEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCC--C--CCCCCCCCCCCeEEEEeCCCC
Q 019388 156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT--L--DCELPPKKKTNISTIMYTSGT 231 (341)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~a~i~~TSGs 231 (341)
+.+....+.............+++++..... ....+....+|+++...+. . ........++++++++|||||
T Consensus 200 ~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGT 275 (700)
T PTZ00216 200 NGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGT 275 (700)
T ss_pred CHHHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCC
Confidence 8876554433322111112356666543211 0112334567888776541 1 111233467899999999999
Q ss_pred CCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecCCHHHHHH-----
Q 019388 232 TGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME----- 306 (341)
Q Consensus 232 TG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~----- 306 (341)
||.||||++||+|+++++......+......+..+|++++.+|++|.+++......+..|+++++. ++..+++
T Consensus 276 TG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~ 353 (700)
T PTZ00216 276 TGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARP 353 (700)
T ss_pred CCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccc
Confidence 999999999999999988876543311111236789999999999999987766667788877663 5555555
Q ss_pred --HhhhhcCcEEeccchHHHHHHHHHHHhh
Q 019388 307 --DIQELKPTMFSGVPRVYDRIYTGTICQC 334 (341)
Q Consensus 307 --~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 334 (341)
.+++++||++.++|.+++.+.+......
T Consensus 354 ~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~ 383 (700)
T PTZ00216 354 HGDLTEFRPVFLIGVPRIFDTIKKAVEAKL 383 (700)
T ss_pred cchHHHcCCcEEEechHHHHHHHHHHHHHH
Confidence 6889999999999999999988765443
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=291.09 Aligned_cols=270 Identities=25% Similarity=0.353 Sum_probs=222.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.+++.+.+.++|+++++.+. +.. .++||+||.++++++|..|.++|+++||+|+++++|++++++++
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~ 80 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFL---GRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEc---CCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 45689999999999999999999986 432 15999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc-
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC- 198 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~- 198 (341)
+||+++|++++|+++.+...++.++++.+++++++++.+.......... ..+....++........ .
T Consensus 81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~ 148 (534)
T COG0318 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE-ALPVVLVVLLVGDADDR-----------LP 148 (534)
T ss_pred HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhc-cCCcceEEEeccccccc-----------cc
Confidence 9999999999999999999999999999999999999984443333322 22222223322222110 1
Q ss_pred eeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcccc--CCCCcEEEEecCh
Q 019388 199 FSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV--CSEEDTYFSFLPL 275 (341)
Q Consensus 199 ~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~--~~~~d~~l~~~pl 275 (341)
..++...... ..........++++++++|||||||.||||++||+|++.++......+ + ++.+|++++.+|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl 223 (534)
T COG0318 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL 223 (534)
T ss_pred ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence 2455553332 122222236789999999999999999999999999999999888877 6 8899999999999
Q ss_pred HHHHHHHH-HHHHHhcCceEEEec---CCHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 276 AHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 276 ~h~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
+|++|+.. ++.+++.|+++++.+ ++++.++..+.++++|+++++|+++..|+++....
T Consensus 224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~ 285 (534)
T COG0318 224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKD 285 (534)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccC
Confidence 99999998 566699999999987 49999999999999999999999999998876544
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=279.44 Aligned_cols=259 Identities=21% Similarity=0.264 Sum_probs=210.9
Q ss_pred HHHHHHHh-CCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCChHHHHHHHHHHhc
Q 019388 48 FFCDSAKR-IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQ 125 (341)
Q Consensus 48 ~l~~~~~~-~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~lA~~~~ 125 (341)
.+++.... .+|+.|+++. +. .+..+++||+||.+.++++|+.|++ .|+ +||+|++++|+.++.++++|||+++
T Consensus 14 ~~dr~~~~~~~~~~aii~~---~e-~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~ri 88 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFD---GE-DGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARI 88 (528)
T ss_pred hhhhhhhccCCCceEEEEE---cC-CCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 45555553 4688999886 33 3333899999999999999999986 578 9999999999999999999999999
Q ss_pred CCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhC--cccCCcccEEEEeccCCchhhHHhhhhCccceeHHH
Q 019388 126 AITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL--PRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE 203 (341)
Q Consensus 126 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (341)
|++.+|+.+.++++.+.+.+++++++++|+++.......... ......+..+++++... ..|.+
T Consensus 89 GAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~~~~~ 154 (528)
T COG0365 89 GAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------LWYDE 154 (528)
T ss_pred CCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------ccHHH
Confidence 999999999999999999999999999999987665332211 10000111133333221 56777
Q ss_pred HHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhh-hhhhccccCCCCcEEEEecChHHHHHHH
Q 019388 204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCSEEDTYFSFLPLAHIYDQI 282 (341)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~-~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 282 (341)
+...........+...+++++++|||||||+||||+|+|..++........ .+ ++.++|++.+..+..|.+|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~GW~~g~~ 229 (528)
T COG0365 155 AVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDPGWIYGLW 229 (528)
T ss_pred HhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCchhhhCch
Confidence 776654444455589999999999999999999999999988777766554 44 777999999999999999999
Q ss_pred H-HHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 283 I-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 283 ~-~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
. ++.++.+|++++++.+ +++.++++|+++++|+++..|+.++.|++.-
T Consensus 230 ~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g 282 (528)
T COG0365 230 YSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLG 282 (528)
T ss_pred HHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcC
Confidence 8 8999999999999865 3899999999999999999999999999764
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=290.83 Aligned_cols=281 Identities=17% Similarity=0.219 Sum_probs=210.9
Q ss_pred CCCHHHHHHHHHH-hCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 42 LESPWQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 42 ~~tl~~~l~~~~~-~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
.+...+++++.++ .+|+++|+++. ....+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|
T Consensus 87 ~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~l 163 (666)
T PLN02654 87 TNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAML 163 (666)
T ss_pred eeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3455778887776 48999999875 3334455889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhh---------HHhhCcc---cCCcccEEEEeccCCchhh
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS---------ILSCLPR---CCLYLKTIVSFANVSSSQK 188 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~---~~~~~~~~i~~~~~~~~~~ 188 (341)
||+++|++++|+++.++.+++..++++++++++|+++..... +...... .......++.++.......
T Consensus 164 A~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
T PLN02654 164 ACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKR 243 (666)
T ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccc
Confidence 999999999999999999999999999999999998864321 1111000 0011122333222110000
Q ss_pred HHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHH-HhhhhhhhhhccccCCCCc
Q 019388 189 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEED 267 (341)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~d 267 (341)
....-.......|+++........+......+++++|+|||||||.||||+++|.+++.. .......+ +++++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~d 318 (666)
T PLN02654 244 EDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPTD 318 (666)
T ss_pred cccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCCc
Confidence 000000001223555543321112223356799999999999999999999999998654 34444445 788999
Q ss_pred EEEEecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 268 TYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 268 ~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
++++..|++|.+|... ++.+++.|++++++++ ++..+++.|+++++|+++++|++++.|++..
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 387 (666)
T PLN02654 319 VYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDG 387 (666)
T ss_pred EEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhC
Confidence 9999999999999876 7889999999999863 7899999999999999999999999998753
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=284.00 Aligned_cols=270 Identities=17% Similarity=0.261 Sum_probs=211.7
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|.+.++++|+++++.+. + ..+.++++||+||.++++++|++|.++|+++|++|+++++|++++++++|
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l 112 (614)
T PRK08180 37 YPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL 112 (614)
T ss_pred cCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence 3568999999999999999999864 2 23446899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCC-----hhHHHHHhhcCceeEEEEcCCC-hhhHHhhCcccCCcccEEEEeccCCchhhHHhhhh
Q 019388 121 ACNSQAITYVPLYDTLG-----ANAVEFIINHAEVSIAFVQENK-IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 194 (341)
||+++|++++|+++.++ .+++.+++++++++++|+++.. ......... .....++..+.....
T Consensus 113 A~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~-------- 181 (614)
T PRK08180 113 AAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV---PADVEVVAVRGAVPG-------- 181 (614)
T ss_pred HHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc---cCCceEEEecCCCCC--------
Confidence 99999999999999988 7999999999999999998642 111111111 111233333321100
Q ss_pred CccceeHHHHHHcCCC---CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCC--CCcEE
Q 019388 195 GVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS--EEDTY 269 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~--~~d~~ 269 (341)
.....++++...... ........++++++|+|||||||.||||++||+++..++......+ ++. .+|++
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~ 255 (614)
T PRK08180 182 -RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVL 255 (614)
T ss_pred -cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEE
Confidence 012345555543211 1112234678999999999999999999999999999888766655 443 56899
Q ss_pred EEecChHHHHHHHH-HHHHHhcCceEEEecC--C---HHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 270 l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
++.+|++|.+|+.. ++.++..|+++++.+. + ...+++.++++++|+++++|+++..|++.+.
T Consensus 256 l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~ 323 (614)
T PRK08180 256 VDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALE 323 (614)
T ss_pred EEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHH
Confidence 99999999999875 7789999999999762 3 3567889999999999999999999988654
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=299.22 Aligned_cols=284 Identities=20% Similarity=0.288 Sum_probs=227.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....|+.++|.+.++++|+++++.+. . ..+.++++||+|+.++++++|.+|.++|+++||+|+++++|+++|+++.
T Consensus 424 ~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~ 499 (1452)
T PTZ00297 424 AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE 499 (1452)
T ss_pred ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45579999999999999999998643 1 1345678999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhh-HHhhhhCccc
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-KEAEELGVSC 198 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~ 198 (341)
+||+++|++++|+++ +.+++.+++++++++++|++.+....+..... ..++++++++....... ......+...
T Consensus 500 lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~ 574 (1452)
T PTZ00297 500 VACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITL 574 (1452)
T ss_pred HHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcce
Confidence 999999999999975 46799999999999999999877766654332 36889999864211000 0000112346
Q ss_pred eeHHHHHHcCC--CCCCCCCCCCCCeEEEEe---CCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEec
Q 019388 199 FSWEEFLQLGT--LDCELPPKKKTNISTIMY---TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273 (341)
Q Consensus 199 ~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~---TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (341)
.+|++++..+. .........+++++.|+| ||||||.||||++||+|+++++..+.... .......+|++++++
T Consensus 575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~--~~~~~~~~D~~Ls~L 652 (1452)
T PTZ00297 575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG--VLPSSFKKHLMVHFT 652 (1452)
T ss_pred eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc--cccCCCCCCEEEEec
Confidence 67999987662 111223346788999996 99999999999999999999999865421 001345789999999
Q ss_pred ChHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHhhhh
Q 019388 274 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCTH 336 (341)
Q Consensus 274 pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 336 (341)
||+|+++....+.++..|+++.. ++++.+++.|++++||+++++|.+++.+.+.+.+...+
T Consensus 653 PLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~ 713 (1452)
T PTZ00297 653 PFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANER 713 (1452)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhh
Confidence 99999997777778999999874 38999999999999999999999999999888776654
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=284.69 Aligned_cols=273 Identities=18% Similarity=0.109 Sum_probs=214.8
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
..-++.++|++.++++|+++++... + +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l 75 (563)
T PLN02860 5 SQAHICQCLTRLATLRGNAVVTISG----N-----RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL 75 (563)
T ss_pred hhhHHHHHHHHHHHhcCCceEEecC----C-----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3468999999999999999998753 2 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.++++++++++++++.+.............+.++.++.++........ .......
T Consensus 76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~ 151 (563)
T PLN02860 76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI----FLNSFLT 151 (563)
T ss_pred HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccccc----chhhccc
Confidence 999999999999999999999999999999999998865332222211122333444444332110000 0000111
Q ss_pred HHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
.+++.... ..........++++++++|||||||.||||+++|+++..++......+ ++..+|++++.+|++|.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~ 226 (563)
T PLN02860 152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIG 226 (563)
T ss_pred cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhc
Confidence 22221111 001111234578999999999999999999999999998877766655 788899999999999999
Q ss_pred HHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
|+..++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++...
T Consensus 227 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 279 (563)
T PLN02860 227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTR 279 (563)
T ss_pred cHHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhh
Confidence 99888899999999999875 99999999999999999999999999987643
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=286.98 Aligned_cols=278 Identities=17% Similarity=0.173 Sum_probs=215.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
...+...+++++.++++|+++|+++. +...+..+++||+||.++++++|+.|.++|+++||+|+++++|++++++++
T Consensus 49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~ 125 (628)
T TIGR02316 49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM 125 (628)
T ss_pred CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 33455678898888889999999875 433445688999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh---------hhHHhhCcccCCcccEEEEeccCCchhhHH
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKE 190 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (341)
|||+++|++++|+++.++.+++..++++++++++|+++... ..+.............++.++.......
T Consensus 126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-- 203 (628)
T TIGR02316 126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR-- 203 (628)
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC--
Confidence 99999999999999999999999999999999999987432 1122211111123456666654311000
Q ss_pred hhhhCccceeHHHHHHcCC-CCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHH-HhhhhhhhhhccccCCCCcE
Q 019388 191 AEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDT 268 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~d~ 268 (341)
........|+++..... ...+.....++++++|+|||||||.||||+++|.+++.+ .......+ ++.++|+
T Consensus 204 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 276 (628)
T TIGR02316 204 --LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQV 276 (628)
T ss_pred --cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcE
Confidence 00001234555544321 112222346789999999999999999999999998644 33444444 7888999
Q ss_pred EEEecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 269 ~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+++..|++|.+|... ++.+++.|+++++.++ ++..+++.|+++++|+++++|++++.|.+.
T Consensus 277 ~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 343 (628)
T TIGR02316 277 MFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQ 343 (628)
T ss_pred EEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence 999999999999765 8889999999999863 789999999999999999999999988764
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=285.51 Aligned_cols=276 Identities=21% Similarity=0.307 Sum_probs=217.7
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.+...+.|++.++++|+++|+++. +...+..+.+||+||.+++.++|+.|+++|+++||+|+++++|++++++++||
T Consensus 56 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 132 (625)
T TIGR02188 56 LNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLA 132 (625)
T ss_pred EEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 346778888888899999999876 43345568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh---------hhHHhhCcccCC-cccEEEEeccCCchhhHHh
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCL-YLKTIVSFANVSSSQKKEA 191 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~ 191 (341)
|+++|++++|+++.++.+++.+++++++++++|+++... ..+..... ..+ .++.++.++....... +.
T Consensus 133 ~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 210 (625)
T TIGR02188 133 CARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALE-KCPVSVEHVLVVRRTGNPVP-WV 210 (625)
T ss_pred HHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHH-hCCCCccEEEEEcCCCCCcC-cc
Confidence 999999999999999999999999999999999987532 12222221 112 4556666653321100 00
Q ss_pred hhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 019388 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (341)
......|+++...............+++++|+|||||||.||||+++|++++..... ....+ ++..+|+++
T Consensus 211 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~ 282 (625)
T TIGR02188 211 ---EGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDIFW 282 (625)
T ss_pred ---ccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcEEE
Confidence 001234566554432223334567789999999999999999999999998765543 33333 788899999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+..|++|..|... ++.++..|+++++.++ ++..+++.|+++++|++.++|++++.|.+..
T Consensus 283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 348 (625)
T TIGR02188 283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLG 348 (625)
T ss_pred ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcC
Confidence 9999999998765 8889999999999753 7899999999999999999999999998753
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=280.16 Aligned_cols=266 Identities=18% Similarity=0.181 Sum_probs=218.6
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.++|.+.++++||++|+++. + +.+||+||.+.++++|+.|.+.|+++|++|+++++|++++++++|||
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~ 119 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA 119 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999864 2 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
+++|++++|+++.++.+++.+++++++++++|++++....+..... ....+..++....... ....+...++
T Consensus 120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 191 (549)
T PRK07788 120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPP-DLGRLRAWGGNPDDDE-------PSGSTDETLD 191 (549)
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhcc-ccccceEEEEecCccc-------cCCcCcccHH
Confidence 9999999999999999999999999999999999876665433211 1122222222111110 0012355677
Q ss_pred HHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 019388 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282 (341)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 282 (341)
++...... ...+...+++++++|||||||.||||+++|+++...+......+ ++..+|++++..|++|.+|+.
T Consensus 192 ~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~ 264 (549)
T PRK07788 192 DLIAGSST--APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGWA 264 (549)
T ss_pred HHhcCCCC--CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHHH
Confidence 77654321 11223456889999999999999999999999999888776666 788899999999999999998
Q ss_pred HHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 283 ~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
.++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++...+
T Consensus 265 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 315 (549)
T PRK07788 265 HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPE 315 (549)
T ss_pred HHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccc
Confidence 88889999999999865 999999999999999999999999999876543
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=276.78 Aligned_cols=284 Identities=18% Similarity=0.219 Sum_probs=226.3
Q ss_pred CCCcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCC
Q 019388 21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (341)
Q Consensus 21 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~ 100 (341)
+.+-+||+..+....+ ...++.+++.+.++++|+++|+++. ++. +++||.||.++++++|+.|.+.|++
T Consensus 5 ~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~ 73 (537)
T PLN02246 5 SEEFIFRSKLPDIYIP----NHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIR 73 (537)
T ss_pred cceeEecCCCCCCCCC----CCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCC
Confidence 4455677776554333 3478999999999999999998864 322 5799999999999999999999999
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEe
Q 019388 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (341)
Q Consensus 101 ~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (341)
+|++|+++++|++++++++|||+++|++++|+++.++.+++..++++++++++|+++...+.+...... .. ..++.+
T Consensus 74 ~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~-~~~i~~ 150 (537)
T PLN02246 74 QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DG-VTVVTI 150 (537)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CC-ceEEEe
Confidence 999999999999999999999999999999999999999999999999999999998776655443221 11 244444
Q ss_pred ccCCchhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcc
Q 019388 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG 260 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~ 260 (341)
+.... ....+.++........+.....++++++++|||||||.||||+++|+++...+....+.. ...
T Consensus 151 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~-~~~ 218 (537)
T PLN02246 151 DDPPE-----------GCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE-NPN 218 (537)
T ss_pred CCCCC-----------CceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcc-ccc
Confidence 43221 123444444332222233345678999999999999999999999999988776543311 011
Q ss_pred ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 261 ~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.++..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++..
T Consensus 219 ~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 290 (537)
T PLN02246 219 LYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSP 290 (537)
T ss_pred cCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCc
Confidence 26788999999999999999876 7778999999999986 9999999999999999999999999987643
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=263.96 Aligned_cols=272 Identities=16% Similarity=0.187 Sum_probs=228.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
-...+++++|.++++++|+++++++. +.. +++||+|+.+.++++|+.|..+|++.||.||++++|.++|+.++
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW 146 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW 146 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence 45689999999999999999999987 432 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|+++++|++...||++...+-|.|.++.++++.+|++.+..+.+.+.........-.+...+..+... +..
T Consensus 147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~---------g~~ 217 (649)
T KOG1179|consen 147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPD---------GIE 217 (649)
T ss_pred HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCc---------hHH
Confidence 99999999999999999999999999999999999999988776665322222222333333332221 133
Q ss_pred eHHHHHHcC-CCC---CCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 019388 200 SWEEFLQLG-TLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (341)
Q Consensus 200 ~~~~~~~~~-~~~---~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (341)
++...++.. ... .......-.++++++|||||||.||+.++||..+...+..+...+ +++.+|+++..+|+
T Consensus 218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL 292 (649)
T KOG1179|consen 218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL 292 (649)
T ss_pred HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence 444444443 222 223445667899999999999999999999999999999888888 99999999999999
Q ss_pred HHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 276 AHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 276 ~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
+|..|.+. +..++..|+|+|+-.. ++..+|+...+|+||++-.+-.+.+.|+....+
T Consensus 293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~ 351 (649)
T KOG1179|consen 293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPS 351 (649)
T ss_pred HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCC
Confidence 99999988 8889999999999875 999999999999999999999999999865443
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=283.19 Aligned_cols=282 Identities=17% Similarity=0.185 Sum_probs=209.5
Q ss_pred CCCCCHHHHHHHHHHh--CCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHH
Q 019388 40 AGLESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~--~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~ 117 (341)
...++..+++++.+.. +|+++|+++. ....+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++
T Consensus 56 ~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~ 132 (647)
T PTZ00237 56 GELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLI 132 (647)
T ss_pred CeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 4456678888887754 7999999875 3323335789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCC---------hhhHHhhCcccCCcccEEEEeccCCc-hh
Q 019388 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSILSCLPRCCLYLKTIVSFANVSS-SQ 187 (341)
Q Consensus 118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 187 (341)
++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+............+++.+..... ..
T Consensus 133 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 212 (647)
T PTZ00237 133 AMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE 212 (647)
T ss_pred HHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccc
Confidence 999999999999999999999999999999999999997631 12222221111012335554422110 00
Q ss_pred hHH----hhhhCccceeHHHHHHcC-----CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHH-HHHHHhhhhhhhh
Q 019388 188 KKE----AEELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA-IVAEVLSVDQMFV 257 (341)
Q Consensus 188 ~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~-l~~~~~~~~~~~~ 257 (341)
... ..........|++++... ...........+++++|+|||||||.||||+++|.+ +..........+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~- 291 (647)
T PTZ00237 213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII- 291 (647)
T ss_pred cccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-
Confidence 000 000001234566665431 111122345678999999999999999999999998 444333333333
Q ss_pred hccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC---C----HHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---D----VRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 258 ~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~---~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
....+|++++..|++|+.+...++.++..|+++++.++ . +..+++.|+++++|+++++|++++.|++.
T Consensus 292 ----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 366 (647)
T PTZ00237 292 ----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKT 366 (647)
T ss_pred ----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhh
Confidence 56678999999999999776668889999999999864 2 67899999999999999999999999874
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=276.39 Aligned_cols=268 Identities=18% Similarity=0.176 Sum_probs=220.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++.+|+++|+++. +...+.++.+||+||.++++++|++|.+.|+++|++|+++++|++++++++||
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la 99 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA 99 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence 357999999999999999999876 43344567999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh-----hhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
|+++|++++|+++.++.+++.++++++++++++++++.. +.+... ......+..++.++...
T Consensus 100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------ 166 (547)
T PRK13295 100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRL-RPELPALRHVVVVGGDG------------ 166 (547)
T ss_pred HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHH-hhhCCCcceEEEecCCC------------
Confidence 999999999999999999999999999999999988641 112111 11223455666655331
Q ss_pred cceeHHHHHHcC--------CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcE
Q 019388 197 SCFSWEEFLQLG--------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT 268 (341)
Q Consensus 197 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~ 268 (341)
...+.++.... ...........+++++++|||||||.||+|+++|++++.++......+ ++..+|+
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~ 240 (547)
T PRK13295 167 -ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDV 240 (547)
T ss_pred -ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCe
Confidence 12333333211 001112234568999999999999999999999999999888877766 7888999
Q ss_pred EEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 269 ~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..|.+...
T Consensus 241 ~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~ 305 (547)
T PRK13295 241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVK 305 (547)
T ss_pred EEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc
Confidence 999999999999876 8889999999999876 99999999999999999999999999887543
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=283.41 Aligned_cols=270 Identities=16% Similarity=0.181 Sum_probs=207.9
Q ss_pred HHHHHHHHHhCCCCcceeeeeccCCC--CcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHH
Q 019388 46 WQFFCDSAKRIPNNQMLGGRKVSDGK--VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (341)
Q Consensus 46 ~~~l~~~~~~~p~~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 123 (341)
...|++.++++|+++|+++. +.. .++++++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~ 254 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII 254 (728)
T ss_pred HHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 44566665678999999876 422 2356899999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh------hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcc
Q 019388 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP------SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
++|++++|+++.++.+++.+++++++++++|+++.... ....... . ...+++++........ ......
T Consensus 255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~-~--~~~~~iv~~~~~~~~~---~~~~~~ 328 (728)
T PLN03052 255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVE-A--KAPKAIVLPADGKSVR---VKLREG 328 (728)
T ss_pred HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHH-h--cCCcEEEEeCCCCccc---cccccC
Confidence 99999999999999999999999999999999875321 1111100 0 0123333332110000 000011
Q ss_pred ceeHHHHHHcCCC-----CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 019388 198 CFSWEEFLQLGTL-----DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 272 (341)
Q Consensus 198 ~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (341)
...|++++..... .........+++++|+|||||||+||||+++|.+++..+......+ +++++|++++.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~~~d~~~~~ 403 (728)
T PLN03052 329 DMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIRKGDIVCWP 403 (728)
T ss_pred CccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCCCCcEEEEC
Confidence 3457776543210 1111223568999999999999999999999999887766554444 78899999999
Q ss_pred cChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 273 LPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 273 ~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.|++|++|...++.++..|++++++++ ++..++++++++++|++.++|++++.|.+.
T Consensus 404 ~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~ 462 (728)
T PLN03052 404 TNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNT 462 (728)
T ss_pred CCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhc
Confidence 999999998778899999999999975 567899999999999999999999998764
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=279.96 Aligned_cols=283 Identities=19% Similarity=0.201 Sum_probs=221.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++|+++|+.+... ++..+..+++||+||.+++.++|+.|.++|+++|++|+++++|++++++++
T Consensus 22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~ 100 (632)
T PRK07529 22 DLPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFAL 100 (632)
T ss_pred cCCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 5567899999999999999999987511 111234578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh-----hhHHhhCcccCCcccEEEEeccCCchh--hHHh-
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQ--KKEA- 191 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~- 191 (341)
|||+++| +++|+++.++.+++.++++.++++++|+++... +.+..... ..+.++.++.++...... ....
T Consensus 101 lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (632)
T PRK07529 101 WGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLA-ALPELRTVVEVDLARYLPGPKRLAV 178 (632)
T ss_pred HHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHh-cCCcceeEEEecCcccccccccccc
Confidence 9999999 679999999999999999999999999987542 22222222 224566666665432100 0000
Q ss_pred ----hhhCccceeHHHHHHcCCC--CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCC
Q 019388 192 ----EELGVSCFSWEEFLQLGTL--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE 265 (341)
Q Consensus 192 ----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~ 265 (341)
.+.......|.+.+..... ........++++++++|||||||.||+|++||+++++++......+ ++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~ 253 (632)
T PRK07529 179 PLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGP 253 (632)
T ss_pred cccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCC
Confidence 0011224456655544311 1122334678999999999999999999999999999888776666 7789
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC----C---HHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 266 ~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~----~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+|++++.+|++|.+|... ++.++..|+++++.+. + ...+++.|+++++|++.++|++++.|++..
T Consensus 254 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 326 (632)
T PRK07529 254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP 326 (632)
T ss_pred CCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc
Confidence 999999999999999886 8889999999999752 2 367899999999999999999999998653
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=277.26 Aligned_cols=263 Identities=20% Similarity=0.210 Sum_probs=208.9
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.+.|.+.++++|++.++.+. +. .++||+||.++++++|+.|.+ .+|++|+++++|++++++++|
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~l 85 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYF 85 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHH
Confidence 3478999999999999999998754 32 469999999999999999987 389999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.++++++++++++++.+....+.............++.++..... ..
T Consensus 86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~ 153 (539)
T PRK06334 86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS 153 (539)
T ss_pred HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence 999999999999999999999999999999999998876554433221100111234444321100 00
Q ss_pred HHHHHH------cCC----CCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 019388 201 WEEFLQ------LGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 201 ~~~~~~------~~~----~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (341)
+.+... ... .........++++++++|||||||.||||++||+++..+.......+ +++.+|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l 228 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMM 228 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEE
Confidence 001000 000 00112345678999999999999999999999999998887766666 788899999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEec--CCHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+.+|++|.+|+.. ++.++..|+++++.. ++++.+++.|+++++|++.++|++++.|++...
T Consensus 229 ~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 292 (539)
T PRK06334 229 SFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAK 292 (539)
T ss_pred EecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhh
Confidence 9999999999976 788999999999875 399999999999999999999999999987654
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=279.15 Aligned_cols=271 Identities=17% Similarity=0.271 Sum_probs=209.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|++.++++||++++.+. +...+.++.+||+||.+.++++|++|.++|+++||+|+++++|++++++++
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 122 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT 122 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence 45678999999999999999999875 332455789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCCh-----hHHHHHhhcCceeEEEEcCCCh-hhHHhhCcccCCcccEEEEeccCCchhhHHhhh
Q 019388 120 EACNSQAITYVPLYDTLGA-----NAVEFIINHAEVSIAFVQENKI-PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 193 (341)
|||+++|++++|+++.++. +++.+++++++++++|+++... ......... ... .++.++.....
T Consensus 123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~~------- 192 (624)
T PRK12582 123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL--LDV-TVVHVTGPGEG------- 192 (624)
T ss_pred HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh--cCc-eEEEEcCCCcc-------
Confidence 9999999999999999875 8999999999999999986421 222121111 112 23444332110
Q ss_pred hCccceeHHHHHHcCCCC---CCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCC---Cc
Q 019388 194 LGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE---ED 267 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~---~d 267 (341)
.....+.++....... .......++++++++|||||||.||||++||+++..+.......+ .... ++
T Consensus 193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~ 265 (624)
T PRK12582 193 --IASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-----PREPDPPPP 265 (624)
T ss_pred --cccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-----cccCCCCCc
Confidence 0123455544332111 111234678999999999999999999999999998877654433 2322 57
Q ss_pred EEEEecChHHHHHHHH-HHHHHhcCceEEEecC--C---HHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 268 TYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 268 ~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
++++.+|++|.+|+.. ++.++..|+++++.+. + ...+++.++++++|++.++|+++..|++.+
T Consensus 266 ~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~ 334 (624)
T PRK12582 266 VSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAM 334 (624)
T ss_pred eEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHH
Confidence 9999999999999876 6778999999999753 3 345677889999999999999999998754
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=279.71 Aligned_cols=274 Identities=21% Similarity=0.311 Sum_probs=214.8
Q ss_pred CHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHH
Q 019388 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (341)
Q Consensus 44 tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 123 (341)
...+.|++.++++|+++|+++. +...+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 68 ~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 144 (637)
T PRK00174 68 VSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACA 144 (637)
T ss_pred HHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 3467788888899999999875 3323356789999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh---------hhHHhhCcccCCcccEEEEeccCCchhhHHhhhh
Q 019388 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194 (341)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 194 (341)
++|++++|+++.++.+++.+++++++++++|+++... +.+.... ...+.++.++.++....... . .
T Consensus 145 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~---~ 219 (637)
T PRK00174 145 RIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEAL-ANCPSVEKVIVVRRTGGDVD-W---V 219 (637)
T ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHH-HhCCCccEEEEEcCCCCCcC-c---C
Confidence 9999999999999999999999999999999987542 1121111 11234556666553321100 0 0
Q ss_pred CccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhh-hhhhhhhccccCCCCcEEEEec
Q 019388 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSFL 273 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~ 273 (341)
......++++...............+++++++|||||||.||||+++|++++.+... ....+ ++..+|++++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~ 294 (637)
T PRK00174 220 EGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWCTA 294 (637)
T ss_pred CCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEEcC
Confidence 011234555554332222334456789999999999999999999999998765543 33333 778899999999
Q ss_pred ChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 274 PLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 274 pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
|++|..|... ++.++..|+++++.++ ++..+++.|+++++|++.++|++++.|++..
T Consensus 295 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 357 (637)
T PRK00174 295 DVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEG 357 (637)
T ss_pred CchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcC
Confidence 9999999875 8889999999999753 7899999999999999999999999998753
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=271.51 Aligned_cols=271 Identities=19% Similarity=0.246 Sum_probs=219.5
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.+++.++|++.++++|+++|+.+. + ..+.++++||.||.+.++++|+.|.++|+++|++|+++++|+.++++++||
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la 81 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG 81 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 368999999999999999999875 3 345567899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++++++..+.+++.+++++++++++|++.+..+.+.+........++.++..+..... ......+
T Consensus 82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 153 (517)
T PRK08008 82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSF 153 (517)
T ss_pred HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccCH
Confidence 99999999999999999999999999999999999987665554443333445556555543110 0113344
Q ss_pred HHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
++..... ...........+++++++|||||||.||+|++||+++........... .+..+|++++.+|++|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~ 228 (517)
T PRK08008 154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDC 228 (517)
T ss_pred HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHH
Confidence 4443322 111122344678999999999999999999999999986654332222 5678899999999999877
Q ss_pred HHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 281 QII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 281 ~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
... ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.++..
T Consensus 229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 279 (517)
T PRK08008 229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQ 279 (517)
T ss_pred HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhC
Confidence 776 7888999999999876 999999999999999999999999888753
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=277.93 Aligned_cols=267 Identities=17% Similarity=0.234 Sum_probs=217.7
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHH
Q 019388 38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (341)
Q Consensus 38 ~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~ 117 (341)
.+....++.++|.+.++++|+++|+++. + +.+||+||.+.++++|.+|.+.|+++|++|+++++|+.++++
T Consensus 32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~ 102 (600)
T PRK08279 32 TPDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLA 102 (600)
T ss_pred CCCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence 3456789999999999999999999875 3 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcc
Q 019388 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
++|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+....... .....++..+......
T Consensus 103 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 171 (600)
T PRK08279 103 AWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLDD---------- 171 (600)
T ss_pred HHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCccccc----------
Confidence 99999999999999999999999999999999999999988766554433222 1222333332211000
Q ss_pred ceeHHHHHHcC---CC--CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 019388 198 CFSWEEFLQLG---TL--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF 272 (341)
Q Consensus 198 ~~~~~~~~~~~---~~--~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (341)
...+.++.... .. .........+++++++|||||||.||||++||+++..++......+ +++++|++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~ 246 (600)
T PRK08279 172 PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCC 246 (600)
T ss_pred cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEe
Confidence 11233332211 11 1122334678999999999999999999999999999999877777 88999999999
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|++++.+++.
T Consensus 247 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~ 305 (600)
T PRK08279 247 LPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQ 305 (600)
T ss_pred cCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhC
Confidence 99999999987 5667888999988776 999999999999999999999999988764
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=271.97 Aligned_cols=269 Identities=17% Similarity=0.189 Sum_probs=220.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 39 ~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
|....++.++|++.++++|+++++.+. + .++||+||.+++.++|..|.+.|+++|++|+++++|+++++++
T Consensus 17 ~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~ 87 (542)
T PRK06155 17 PPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDV 87 (542)
T ss_pred CccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHH
Confidence 445678999999999999999999864 3 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 198 (341)
+|||+++|++++|+++.++.+++..+++++++++++++.+....+...... ...++.++.++..... .....+
T Consensus 88 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~ 160 (542)
T PRK06155 88 FLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPG-DLPLPAVWLLDAPASV------SVPAGW 160 (542)
T ss_pred HHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccc-ccCcceEEEecCcccc------cccccc
Confidence 999999999999999999999999999999999999998877665443322 1234556666543210 000000
Q ss_pred eeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 019388 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
. ...+.. ...........++++++++|||||||.||+|+++|+++..........+ ++..+|++++.+|++|.
T Consensus 161 ~-~~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~ 233 (542)
T PRK06155 161 S-TAPLPP-LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPLFHT 233 (542)
T ss_pred c-hhhhcc-cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCHHHH
Confidence 0 001111 1111122344678999999999999999999999999998887766666 78899999999999999
Q ss_pred HHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 279 ~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++..
T Consensus 234 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~ 286 (542)
T PRK06155 234 NALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQP 286 (542)
T ss_pred HHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCc
Confidence 999888999999999999876 8999999999999999999999999887653
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=267.68 Aligned_cols=246 Identities=20% Similarity=0.247 Sum_probs=210.3
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
+.+++++|.+.+.++||++|+.+. + +.+||.||.+++.++|+.|.+.|+++|++|+++++|+.++++++||
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE----E-----KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC----C-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 368999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
++++|++++|+++..+.+++..++++++++++++++.......... ...+
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~ 121 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF 121 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence 9999999999999999999999999999999999886544321110 0113
Q ss_pred HHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
+++.... ...........+++++++|||||||.||+|++||.++...+......+ ++..+|++++.+|++|.+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 196 (483)
T PRK03640 122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG 196 (483)
T ss_pred HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence 3332222 111222344678999999999999999999999999988877765555 8889999999999999999
Q ss_pred HHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++.+.
T Consensus 197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 248 (483)
T PRK03640 197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLG 248 (483)
T ss_pred HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC
Confidence 9888889999999999887 99999999999999999999999999986543
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=268.89 Aligned_cols=265 Identities=25% Similarity=0.382 Sum_probs=221.3
Q ss_pred CHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHH
Q 019388 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (341)
Q Consensus 44 tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 123 (341)
+++++|.+.++++|+++++.+. + +++||+||.+++.++|++|.+.|+++|++|+++++|+.++++++|||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH----D-----RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4789999999999999999864 2 479999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHH
Q 019388 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE 203 (341)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (341)
+.|++++|+++..+.+++..++++++++++|++.+....+....... ..+..++.+++...... .......|++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 145 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGC-HDLRTLILVGEPAHASE-----GGGESPSWPK 145 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcc-cccceEEEecCcccccC-----CccccccHHH
Confidence 99999999999999999999999999999999987766554433322 34556666654321100 0112345666
Q ss_pred HHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 019388 204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283 (341)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 283 (341)
+...... ........+++++++|||||||.||+|.+||+++..++......+ ++..+|++++.+|++|.+|+..
T Consensus 146 ~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~ 219 (515)
T TIGR03098 146 LLALGDA-DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFNQ 219 (515)
T ss_pred hhccccc-cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHHH
Confidence 5543321 122334567899999999999999999999999999988877766 7888999999999999999988
Q ss_pred HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 284 ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 284 ~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
++.++..|+++++.+. +++.+++.++++++|++.++|+++..|.+.
T Consensus 220 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 266 (515)
T TIGR03098 220 LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQL 266 (515)
T ss_pred HHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhc
Confidence 9999999999999876 999999999999999999999999998764
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=266.57 Aligned_cols=243 Identities=27% Similarity=0.397 Sum_probs=199.5
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEE
Q 019388 76 VWLTYQEVYDAAIRFGSAMRSRG--VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (341)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g--~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (341)
+.+||+|+.+++.++|.+|.++| +++||+|++++||++++..+++||+..|+++.+++|.+.+.++..+++.++++++
T Consensus 44 ~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kii 123 (537)
T KOG1176|consen 44 RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLI 123 (537)
T ss_pred cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEE
Confidence 68999999999999999999876 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee-HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCC
Q 019388 154 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS-WEEFLQLGTLDCELPPKKKTNISTIMYTSGTT 232 (341)
Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsT 232 (341)
|++.+..+.+........ ..++++.......... ....... ++.+...+.... ..+...++++.++||||||
T Consensus 124 f~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~~~il~SSGTT 196 (537)
T KOG1176|consen 124 FVDEDFYDKISEATSKLA---LKIIVLTGDEGVISIS---DLVEDLDAFEDLMPEGLPDG-IRPVSEDDTAAILYSSGTT 196 (537)
T ss_pred EEcCchHHHHHHHHhhcC---CceEEEecccCccccc---cccccccchhhccccCCCcc-cccCCCCCeEEEecCCCCC
Confidence 999999988866654332 4555555431110000 0001111 444444442222 5667789999999999999
Q ss_pred CCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHH-HHhcCceEEEecC-CHHHHHHHhhh
Q 019388 233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQE 310 (341)
Q Consensus 233 G~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~-~l~~G~~~v~~~~-~~~~~~~~i~~ 310 (341)
|.||||++||++++.+.......+ .....|+.++.+|++|.+|+..++. .+..|+++++.+. +++.+++.|++
T Consensus 197 g~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~k 271 (537)
T KOG1176|consen 197 GLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEK 271 (537)
T ss_pred CCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHH
Confidence 999999999999999988766655 6777999999999999999999666 5666666666666 99999999999
Q ss_pred hcCcEEeccchHHHHHHHHH
Q 019388 311 LKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 311 ~~~t~~~~~P~~~~~l~~~~ 330 (341)
|++|++.++|.++..|++..
T Consensus 272 ykvt~~~~vP~~~~~l~~~p 291 (537)
T KOG1176|consen 272 YKVTHLFLVPPVLNMLAKSP 291 (537)
T ss_pred hCEEEEEcChHHHHHHhcCC
Confidence 99999999999999999865
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=273.07 Aligned_cols=268 Identities=16% Similarity=0.216 Sum_probs=219.5
Q ss_pred CCCCHHHHHHHHHH-hCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 41 GLESPWQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 41 ~~~tl~~~l~~~~~-~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
..+.+.+.+.+.++ .+|++.|+.+. +.. ..+++||+||.+++.++|.+|.++|+++|++|+++++|++++++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 34566678888877 47999999875 322 3468999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|||+++|++++|+++.++.+++.+++++++++++|++......... ...+.++.++.++.... ......
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~ 184 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTL 184 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCcc
Confidence 9999999999999999999999999999999999999876543321 12244556666654321 011234
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
.+.+++.............++++++++|||||||.||||+++|++++.++......+ ++..+|++++..|++|.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~ 259 (570)
T PRK04319 185 DFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWVT 259 (570)
T ss_pred CHHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHhh
Confidence 566665443222233445678999999999999999999999999998888776666 788899999999999999
Q ss_pred HHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 280 DQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 280 g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
|... ++.++..|+++++... ++..+++.|+++++|+++++|++++.|++.
T Consensus 260 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 312 (570)
T PRK04319 260 GTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGA 312 (570)
T ss_pred CchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhc
Confidence 8776 8889999999999753 899999999999999999999999999864
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=253.54 Aligned_cols=313 Identities=31% Similarity=0.560 Sum_probs=255.3
Q ss_pred CCCcceeccccCCCCCCC-CCCCCCHHHHHHHHHHhCCCCcceeeeec--------cCCC------CcceEEEeHHHHHH
Q 019388 21 SGGPVYRCIYAKDGLLES-PAGLESPWQFFCDSAKRIPNNQMLGGRKV--------SDGK------VGPYVWLTYQEVYD 85 (341)
Q Consensus 21 ~~~~~~r~~~~~~~~~~~-~~~~~tl~~~l~~~~~~~p~~~al~~~~~--------~~~~------~~~~~~~Ty~el~~ 85 (341)
.++.+||++-...++-.. -+...|++++|+..++++.++.++.++.+ +|+. -+++.++||.|+..
T Consensus 18 ~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~ 97 (678)
T KOG1180|consen 18 HETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYE 97 (678)
T ss_pred CCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHH
Confidence 577899999765544333 36779999999999999999999866533 1221 46788999999999
Q ss_pred HHHHHHHHHHhCCCCCCCe-EEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHH
Q 019388 86 AAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL 164 (341)
Q Consensus 86 ~~~~la~~L~~~g~~~~~~-V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 164 (341)
++.++|++|...|+++++. ++|+++.+.+|..+++||++.+..+|-+..++..+.+.+-|+.++++.||++.+.+..+.
T Consensus 98 ~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~ 177 (678)
T KOG1180|consen 98 RVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLK 177 (678)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHH
Confidence 9999999999999998777 999999999999999999999999999999999999999999999999999999988665
Q ss_pred hhCcccCCcccEEEEeccCCchhh--HHh--hhhCccceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCcccee
Q 019388 165 SCLPRCCLYLKTIVSFANVSSSQK--KEA--EELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239 (341)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~ 239 (341)
.-.+ ....++.+|.++....... ... -..+....+|+++...+ ....++.+..++|+|+|||||||||.||||+
T Consensus 178 ~~l~-~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVm 256 (678)
T KOG1180|consen 178 APLK-QAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVM 256 (678)
T ss_pred HHHh-ccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEE
Confidence 5544 4478999999985332111 111 12457889999999888 3323344447899999999999999999999
Q ss_pred eecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC-----CHHHHH----HHhhh
Q 019388 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLM----EDIQE 310 (341)
Q Consensus 240 ~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~----~~i~~ 310 (341)
++|.|+++.+....... ..+...|+++.++||.|++-+..-+.++.-|+.+---+. ....+. -.+..
T Consensus 257 l~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~ 332 (678)
T KOG1180|consen 257 LTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTE 332 (678)
T ss_pred EecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCcccc
Confidence 99999999999876655 367899999999999999999998889999998876432 111111 23567
Q ss_pred hcCcEEeccchHHHHHHHHHHHhhhhhc
Q 019388 311 LKPTMFSGVPRVYDRIYTGTICQCTHKL 338 (341)
Q Consensus 311 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 338 (341)
.|||++.+||.+++++-+.+.+++...+
T Consensus 333 lkPTiM~~VpAV~drVrKgVl~kV~~~~ 360 (678)
T KOG1180|consen 333 LKPTIMAAVPAVMDRVRKGVLSKVNAMP 360 (678)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhch
Confidence 8999999999999999999888877644
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=268.11 Aligned_cols=270 Identities=21% Similarity=0.323 Sum_probs=225.9
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.+.|.+.++.+|+++|+.+. + +++||+||++.+.++|..|.+.|+++|++|+++++|+++++++++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~l 73 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAAL 73 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4578999999999999999999874 3 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++..+.+++..+++++++++++++............ .....+.++......... ......+
T Consensus 74 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~ 146 (513)
T PRK07656 74 GALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATT-RLPALEHVVICETEEDDP------HTEKMKT 146 (513)
T ss_pred HHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHh-ccCCccEEEEEcCccccc------Ccccccc
Confidence 999999999999999999999999999999999999886655443322 223445555444332110 0012346
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
|+++...............+++++++|||||||.||+|.++|.++...+......+ ++..+|++++.+|++|.+|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 221 (513)
T PRK07656 147 FTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHVFG 221 (513)
T ss_pred HHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHHHH
Confidence 77776544322334456788999999999999999999999999999888877766 8889999999999999999
Q ss_pred HHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 281 QII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 281 ~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+.. ++.++..|+++++.+. +++.+++.|+++++|++.++|.++..|++...
T Consensus 222 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 274 (513)
T PRK07656 222 YKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPD 274 (513)
T ss_pred HHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCC
Confidence 887 7889999999998765 99999999999999999999999999987543
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=270.54 Aligned_cols=278 Identities=19% Similarity=0.289 Sum_probs=223.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCChHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
..++.++|+..+..+|++.++.+. ++ .++.+||+||.+++.++|++|.+ .|+++|++|+++++|+.+++++++
T Consensus 9 ~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~l 82 (576)
T PRK05620 9 PLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLF 82 (576)
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 368999999999999999998764 22 24789999999999999999986 799999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.++++.++++++|++....+.+...... ....+.++.++..................+
T Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 161 (576)
T PRK05620 83 AVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKE-CPCVRAVVFIGPSDADSAAAHMPEGIKVYS 161 (576)
T ss_pred HHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhh-CccccEEEEecCcccccchhcccccccccc
Confidence 9999999999999999999999999999999999998776665444332 244555555543221100000011123456
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhh--hhhhhhccccCCCCcEEEEecChHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
|+++..............++++++++|||||||.||||+++|+++....... ...+ ++..+|++++.+|++|.
T Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~ 236 (576)
T PRK05620 162 YEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPIYHV 236 (576)
T ss_pred HHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCChHHh
Confidence 7777764432223345567899999999999999999999999987655442 2233 67889999999999999
Q ss_pred HHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 279 YDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 279 ~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+|+..++.++..|+++++... ++..+++.|+++++|.+.++|+++..++....
T Consensus 237 ~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 291 (576)
T PRK05620 237 LSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYL 291 (576)
T ss_pred hhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhh
Confidence 999888889999999998753 89999999999999999999999999886543
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=276.34 Aligned_cols=276 Identities=16% Similarity=0.182 Sum_probs=213.2
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.+...++|++.++.+|+++|+++. +...+..+.+||+||.++++++|+.|+++|+++||+|+++++|++++++++||
T Consensus 52 ~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 128 (629)
T PRK10524 52 TNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLA 128 (629)
T ss_pred eeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 344688898888889999999875 43344568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh---------hhHHhhCcccCCcccEEEEeccCCchhhHHhh
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 192 (341)
|+++|++++|+++.++.+++..++++++++++|+++... +.+.............++.++...... .
T Consensus 129 ~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~ 204 (629)
T PRK10524 129 CARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----A 204 (629)
T ss_pred HHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----C
Confidence 999999999999999999999999999999999976421 222222211112345666665321100 0
Q ss_pred hhCccceeHHHHHHcCC-CCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 019388 193 ELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (341)
........+.++..... ...+......+++++++|||||||.||||+++|.+++..... ....+ ++..+|+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~ 279 (629)
T PRK10524 205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFF 279 (629)
T ss_pred cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 00001234555544321 112222346789999999999999999999999998654443 33334 778899999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..|++|..|... ++.+++.|+++++..+ ++..+++.|+++++|++.++|++++.|.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 344 (629)
T PRK10524 280 CASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQ 344 (629)
T ss_pred EcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhc
Confidence 9999999988765 8889999999999763 688999999999999999999999988764
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=268.26 Aligned_cols=268 Identities=19% Similarity=0.198 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.+++.+.++.+|+++|++.. ++..+.+..+||+||++.+.++|.+|.+.|+++|++|+++++|+.++++++|||
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 68999999999999999998864 223334578999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh----hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 198 (341)
+++|++++|+++.++.+++.++++.++++++++++.... ...............++.++... .
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 165 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------D 165 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------C
Confidence 999999999999999999999999999999999876421 11111112223445566654321 1
Q ss_pred eeHHHHHHcCC-CC-------CCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 019388 199 FSWEEFLQLGT-LD-------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 199 ~~~~~~~~~~~-~~-------~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (341)
..++.++.... .. .......++++++++|||||||.||||+++|+++...+......+ ++..+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l 240 (538)
T TIGR03208 166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVIL 240 (538)
T ss_pred cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEE
Confidence 12333322110 00 111235678999999999999999999999999999988877776 788899999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.....
T Consensus 241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~ 303 (538)
T TIGR03208 241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVK 303 (538)
T ss_pred EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchh
Confidence 9999999999876 7889999999999876 99999999999999999999999999886553
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=267.56 Aligned_cols=272 Identities=23% Similarity=0.362 Sum_probs=230.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++.+|+++|+.+. + ..+||+||++.+.++|+.|.+.|+++|++|+++++|+.++++++
T Consensus 3 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~ 73 (521)
T PRK06187 3 DYPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAY 73 (521)
T ss_pred cccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 34678999999999999999999875 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|||+++|++++|+++.++.+++..+++.+++++++++.+..+.+.+.... .+.+++++.+++.... .......
T Consensus 74 la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~ 146 (521)
T PRK06187 74 FAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQ-LPTVRTVIVEGDGPAA------PLAPEVG 146 (521)
T ss_pred HHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhc-cCCccEEEEecCcccc------ccccccc
Confidence 99999999999999999999999999999999999999877666554432 2455667766554311 1112345
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
.+.++...............+++++++|||||||.||+|.+||+++..........+ ++..+|++++.+|++|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~ 221 (521)
T PRK06187 147 EYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH 221 (521)
T ss_pred cHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence 566665544333334456778999999999999999999999999999888877766 889999999999999999
Q ss_pred HHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
++...+.++..|+++++.+. ++..+++.++++++|.++++|++++.|++..++
T Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~ 275 (521)
T PRK06187 222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA 275 (521)
T ss_pred hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC
Confidence 99886679999999999876 999999999999999999999999999876554
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=269.88 Aligned_cols=269 Identities=19% Similarity=0.257 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.++|.+.++++|+++|+.+. + .++||+||.++++++|++|.++|+++||+|+++++|++++++++|||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG----K-----TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC----C-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 56899999999999999999864 2 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccC----CcccEEEEeccCCchhhHHhhhhCccc
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC----LYLKTIVSFANVSSSQKKEAEELGVSC 198 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~ 198 (341)
+++|++++|+++.++.+++.++++.++++++|++.+....+........ .....++.++...... ......
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 159 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSEE 159 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcccc
Confidence 9999999999999999999999999999999998876654433221110 0112344444321100 000112
Q ss_pred eeHHHHHHcCCCC-C----CCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEec
Q 019388 199 FSWEEFLQLGTLD-C----ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273 (341)
Q Consensus 199 ~~~~~~~~~~~~~-~----~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (341)
..++++....... . .......+++++++|||||||.||+|+++|+++..........+ .+...+++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~ 234 (579)
T PLN03102 160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWTL 234 (579)
T ss_pred cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEecC
Confidence 3455554433111 0 01223568999999999999999999999999866554433333 556678999999
Q ss_pred ChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 274 PLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 274 pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
|++|..|+...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++..
T Consensus 235 pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 292 (579)
T PLN03102 235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGN 292 (579)
T ss_pred ChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCc
Confidence 99999998887778889999888875 8889999999999999999999999998754
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=268.00 Aligned_cols=271 Identities=20% Similarity=0.284 Sum_probs=219.6
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCChHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
..++.++|.+.++++|+++|+.+. + +.+||+||.+++.++|..|.+. |+++|++|+++++|++++++++|
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 79 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY 79 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHH
Confidence 467999999999999999999875 3 4799999999999999999999 99999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCc--h-hhHHh------
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS--S-QKKEA------ 191 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~~~------ 191 (341)
||+++|++++|+++..+.+++.++++++++++++++.+....+....... .++.++..+.... . .....
T Consensus 80 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (546)
T PRK08314 80 AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLRA 157 (546)
T ss_pred HHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCccccccc
Confidence 99999999999999999999999999999999999988766554432221 2333433221100 0 00000
Q ss_pred -----hhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCC
Q 019388 192 -----EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266 (341)
Q Consensus 192 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~ 266 (341)
...+.+...|++...... .........+++++++|||||||.||+|.++|++++.++......+ ++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~ 231 (546)
T PRK08314 158 EPPLQALAPGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NSTPE 231 (546)
T ss_pred ccccccccccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCC
Confidence 000112345555544321 1223345678999999999999999999999999999988877666 78899
Q ss_pred cEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 267 DTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 267 d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.
T Consensus 232 d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~ 296 (546)
T PRK08314 232 SVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLAS 296 (546)
T ss_pred ceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhC
Confidence 99999999999999876 7889999999999986 999999999999999999999999988753
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=267.30 Aligned_cols=259 Identities=19% Similarity=0.223 Sum_probs=213.5
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.++|.+.++++|+++|+.+. + ..+||+||.++++++|++|.++|+++|++|+++++|++++++++|||
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 113 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA 113 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence 57999999999999999999864 2 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
+++|++++|+++.++.+++.+++++++++++|++.+....+...... .+....++.++.... ...++
T Consensus 114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~ 180 (537)
T PRK13382 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALAD-CPQATRIVAWTDEDH------------DLTVE 180 (537)
T ss_pred HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhh-ccccceEEEecCCcc------------cccHH
Confidence 99999999999999999999999999999999998766554332221 122233333322110 12344
Q ss_pred HHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 019388 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282 (341)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 282 (341)
.+....... ......++.++++|||||||.||||+++|++++.........+ .+..+|+++...|++|.+|+.
T Consensus 181 ~~~~~~~~~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~~ 253 (537)
T PRK13382 181 VLIAAHAGQ--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGFS 253 (537)
T ss_pred HHhhccCcC--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHHH
Confidence 443322111 1123467899999999999999999999999988887766665 778899999999999999998
Q ss_pred HHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 283 ~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.++.++..|+++++.+. +++.+++.|+++++|++.++|++++.|++..
T Consensus 254 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 302 (537)
T PRK13382 254 QLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLP 302 (537)
T ss_pred HHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCC
Confidence 78889999999998765 9999999999999999999999999998643
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=267.19 Aligned_cols=266 Identities=19% Similarity=0.234 Sum_probs=215.8
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.++|++.++++|+++++.+. ++ +.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~ 94 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC 94 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57999999999999999998864 33 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh-----hhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcc
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
+++|++++|+++.++.+++..+++.+++++++++.... +.+..... ....+..++.++...... .
T Consensus 95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~ 164 (547)
T PRK06087 95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQN-QLPQLQQIVGVDKLAPAT---------S 164 (547)
T ss_pred HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHh-hCCCCcEEEEeCCcCCCc---------C
Confidence 99999999999999999999999999999999986421 22222211 223444566655432110 1
Q ss_pred ceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 019388 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (341)
...+.++...............+++++++|||||||.||+|+++|.+++.........+ ++..+|++++.+|++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h 239 (547)
T PRK06087 165 SLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLGH 239 (547)
T ss_pred ccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchHH
Confidence 22444444433211122345678999999999999999999999999998887766655 7889999999999999
Q ss_pred HHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 278 IYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 278 ~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+++...
T Consensus 240 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~ 295 (547)
T PRK06087 240 ATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLE 295 (547)
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccc
Confidence 999876 7888999999999876 99999999999999999988888777776543
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=270.40 Aligned_cols=270 Identities=19% Similarity=0.203 Sum_probs=207.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 39 ~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
+....++.+.|.+.++++|+++|+.+. ++. +.+||+||.++++++|+.|.++|+++|++|+++++|+++++++
T Consensus 10 ~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~ 82 (540)
T PRK05857 10 PQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLS 82 (540)
T ss_pred ccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHH
Confidence 455678999999999999999999865 432 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 198 (341)
+|||+++|++++|+++.++.+++.++++.++++++|++......... .......+. ++.++...... .
T Consensus 83 ~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~----------~ 150 (540)
T PRK05857 83 VLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSA-VPEALHSIP-VIAVDIAAVTR----------E 150 (540)
T ss_pred HHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccc-ccccccccc-eeEeecccccc----------c
Confidence 99999999999999999999999999999999999999865422111 111111222 22333211100 0
Q ss_pred eeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 019388 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
+....... .........++++++++|||||||.||||.++|+++.++........ ....++..++++++.+|++|.
T Consensus 151 --~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~h~ 226 (540)
T PRK05857 151 --SEHSLDAA-SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYSPLPATHI 226 (540)
T ss_pred --cccccccc-ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeeecCCcccc
Confidence 00000000 01112334678999999999999999999999999987654432110 000145577899999999999
Q ss_pred HHHHHHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 279 YDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 279 ~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+|+..++.+++.|+++++.+.++..+++.|+++++|+++++|++++.|++...
T Consensus 227 ~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~ 279 (540)
T PRK05857 227 GGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELK 279 (540)
T ss_pred chHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccc
Confidence 99988888999999988765689999999999999999999999999987543
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=266.36 Aligned_cols=285 Identities=18% Similarity=0.223 Sum_probs=211.1
Q ss_pred CcceeccccCCCCCCCCCCCCCHH-HHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHh-CCCC
Q 019388 23 GPVYRCIYAKDGLLESPAGLESPW-QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVN 100 (341)
Q Consensus 23 ~~~~r~~~~~~~~~~~~~~~~tl~-~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~ 100 (341)
+..+++.++...+|..+ ..++. .++.+ +.+|+++++++. ++. .++||+||.++++++|+.|.+ .|++
T Consensus 22 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~ 90 (560)
T PLN02574 22 TGIYSSKHPPVPLPSDP--NLDAVSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVR 90 (560)
T ss_pred CeeecCCCCCCCCCCCC--CCCHHHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCC
Confidence 44555554333333322 22333 44444 678999998864 322 369999999999999999998 9999
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEe
Q 019388 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (341)
Q Consensus 101 ~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (341)
+||+|+++++|+.++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+... .. .++.+
T Consensus 91 ~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~ 163 (560)
T PLN02574 91 QGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GV-PVIGV 163 (560)
T ss_pred CCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CC-cEEec
Confidence 999999999999999999999999999999999999999999999999999999998765544321 11 12222
Q ss_pred ccCCchhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcc
Q 019388 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG 260 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~ 260 (341)
+...... ........++.+..............++++++++|||||||.||||++||+++..++..+........
T Consensus 164 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 238 (560)
T PLN02574 164 PENYDFD-----SKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQY 238 (560)
T ss_pred Ccccccc-----cCccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhcccccc
Confidence 2110000 00011234555554432222233456789999999999999999999999999988776543211111
Q ss_pred ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 261 ~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.....+++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++..
T Consensus 239 ~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 310 (560)
T PLN02574 239 EYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKA 310 (560)
T ss_pred ccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCc
Confidence 12235688999999999999987 6677889999998876 9999999999999999999999999998754
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=265.27 Aligned_cols=266 Identities=22% Similarity=0.222 Sum_probs=221.2
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.+.+.+.++++|+++|+.+. + ..+||.||.+.++++|.+|.+.|+++|++|+++++|++++++++|
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~ 85 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999865 3 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++..+++++++++++++......+... ....+..+.++.+++.... +..+
T Consensus 86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~ 154 (542)
T PRK07786 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAV-RDIVPLLSTVVVAGGSSDD----------SVLG 154 (542)
T ss_pred HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHh-hhccCccceEEEecCCCcc----------cccC
Confidence 9999999999999999999999999999999999998766544332 2222445555555432211 1345
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccC-CCCcEEEEecChHHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC-SEEDTYFSFLPLAHIY 279 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~ 279 (341)
++++...............+++++++|||||||.||+|.++|+++...+......+ ++ ..+|++++..|++|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~ 229 (542)
T PRK07786 155 YEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHIA 229 (542)
T ss_pred HHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHHH
Confidence 66665443222233345567899999999999999999999999998888776655 55 5678999999999999
Q ss_pred HHHHHHHHHhcCceEEEec---CCHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 280 DQIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
|+..++.++..|+++++.+ +++..+++.|+++++|.++++|+++..|++...
T Consensus 230 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~ 284 (542)
T PRK07786 230 GIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQ 284 (542)
T ss_pred HHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcc
Confidence 9988999999999999865 289999999999999999999999999987543
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=264.10 Aligned_cols=276 Identities=20% Similarity=0.279 Sum_probs=218.4
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|+..+..+|+..++.+. .++.++.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~l 82 (539)
T PRK07008 8 MPLLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYY 82 (539)
T ss_pred CCCCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 4468999999999999998887653 22335789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++..+++++++++++++.+..+.+..... ....++.++.++...... ........
T Consensus 83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (539)
T PRK07008 83 GVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLP-----AGSTPLLC 156 (539)
T ss_pred HHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHh-hCCCceEEEEEccCCccc-----cCCccccc
Confidence 999999999999999999999999999999999999876654433322 223444555544332100 01122455
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHh--hhhhhhhhccccCCCCcEEEEecChHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
++++..............++++++++|||||||.||+|++||++++.+.. .+...+ ++..+|++++..|++|.
T Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (539)
T PRK07008 157 YETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHV 231 (539)
T ss_pred HHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHh
Confidence 66665433222223345678899999999999999999999999875433 222333 67889999999999999
Q ss_pred HHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 279 YDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 279 ~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
+++..++.++..|+++++.+. +++.+++.++++++|++.++|+++..|++..+.
T Consensus 232 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~ 287 (539)
T PRK07008 232 NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMRE 287 (539)
T ss_pred hhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccc
Confidence 888777888999999998753 899999999999999999999999999876543
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=264.57 Aligned_cols=277 Identities=20% Similarity=0.228 Sum_probs=219.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|+..++++|+++++... . .+.++++||+||.+.++++|++|.++|+++|++|+++++|+.++++++
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~ 81 (542)
T PRK06018 7 DWPLLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAW 81 (542)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Confidence 44579999999999999999999742 1 233578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|||+++|++++|+++.++.+++..+++.++++.++++.+..+.+.+..... +.++.++.+.+..... .....+..
T Consensus 82 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (542)
T PRK06018 82 YGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKL-PSVERYVVLTDAAHMP----QTTLKNAV 156 (542)
T ss_pred HHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhC-CCccEEEEeccccccc----ccCccccc
Confidence 999999999999999999999999999999999999998776665443322 3445555544321100 00011233
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHH-HHH-hhhhhhhhhccccCCCCcEEEEecChHH
Q 019388 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV-AEV-LSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~-~~~-~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (341)
.+.+++..............+++++++|||||||.||+|++||++.+ ... ......+ ++..+|+++...|++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h 231 (542)
T PRK06018 157 AYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFH 231 (542)
T ss_pred cHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHH
Confidence 55555544322222334567889999999999999999999999743 222 2223333 7888999999999999
Q ss_pred HHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 278 IYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 278 ~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
.+++...+.++..|+++++... ++..+++.++++++|.+.++|+++..+++...
T Consensus 232 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~ 287 (542)
T PRK06018 232 ANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYME 287 (542)
T ss_pred HhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhccc
Confidence 9998877788899999988753 88999999999999999999999999987554
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=265.31 Aligned_cols=270 Identities=15% Similarity=0.194 Sum_probs=215.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++|+++|+... + +.+||+||.+.+.++|+.|.+.|+++|++|+++++|+.++++++
T Consensus 7 ~~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 77 (540)
T PRK06164 7 PRADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF 77 (540)
T ss_pred cCCCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence 34568999999999999999999853 2 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh-----hhHHhhCcccCCcccEEEEeccCCchhhHHhhhh
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 194 (341)
|||+++|++++|+++..+.+++.+++++++++++|++.+.. +.+..........++.++.++.......
T Consensus 78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 151 (540)
T PRK06164 78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP------ 151 (540)
T ss_pred HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC------
Confidence 99999999999999999999999999999999999987642 1121212122234455555542111000
Q ss_pred CccceeHHHHHHcCCCC----CCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 019388 195 GVSCFSWEEFLQLGTLD----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (341)
......+.......... ........+++++++|||||||.||+|+++|+++..++......+ ++..+|+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l 226 (540)
T PRK06164 152 APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLL 226 (540)
T ss_pred CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 00001111111111000 011223468899999999999999999999999999998887777 788999999
Q ss_pred EecChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 271 SFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 271 ~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+.+|++|.+|+..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.
T Consensus 227 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~ 286 (540)
T PRK06164 227 AALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDT 286 (540)
T ss_pred EcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHh
Confidence 99999999999888999999999999875 999999999999999999999999999876
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=264.99 Aligned_cols=276 Identities=24% Similarity=0.362 Sum_probs=215.1
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.+++++.++++|+++|+.+. + ..+||.||.+.++++|+.|.++|+++||+|+++++|+++++++++
T Consensus 30 ~~~~l~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~l 100 (573)
T PRK05605 30 GDTTLVDLYDNAVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFY 100 (573)
T ss_pred CcCCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 3458999999999999999999874 3 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCc---hhhH--------
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS---SQKK-------- 189 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~-------- 189 (341)
||+++|++++|+++.++.+++.+++++++++++|+++.....+...... .....++.++.... ....
T Consensus 101 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 178 (573)
T PRK05605 101 AVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPA 178 (573)
T ss_pred HHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeeccccccccccccccccccc
Confidence 9999999999999999999999999999999999988765544333221 12333433321100 0000
Q ss_pred ------HhhhhCccceeHHHHHHcCCCC----CCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhc
Q 019388 190 ------EAEELGVSCFSWEEFLQLGTLD----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259 (341)
Q Consensus 190 ------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~ 259 (341)
...........|+++....... ........+++++++|||||||.||+|.+||+++..++......+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--- 255 (573)
T PRK05605 179 LRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWV--- 255 (573)
T ss_pred ccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhc---
Confidence 0000112344566665442111 122345678999999999999999999999999988776543322
Q ss_pred cccC-CCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 260 GKVC-SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 260 ~~~~-~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
.++ ..+|++++.+|++|.+|+.. ++.++..|+++++.+. +++.+++.|+++++|++.++|++++.|++...
T Consensus 256 -~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 329 (573)
T PRK05605 256 -PGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAE 329 (573)
T ss_pred -cccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcc
Confidence 122 34689999999999999876 6778899999999876 99999999999999999999999999987554
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=270.29 Aligned_cols=260 Identities=22% Similarity=0.275 Sum_probs=202.4
Q ss_pred hCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecC
Q 019388 55 RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD 134 (341)
Q Consensus 55 ~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 134 (341)
.+|+++|+++. + ..+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+++
T Consensus 96 ~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~ 171 (655)
T PRK03584 96 RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSP 171 (655)
T ss_pred CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCC
Confidence 57999999876 3 3455689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHhhcCceeEEEEcCCCh---------hhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHH
Q 019388 135 TLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFL 205 (341)
Q Consensus 135 ~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (341)
.++.+++.+++++++++++|+++... +.+.... ...+.+..++.++...... ..........|+++.
T Consensus 172 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~ 247 (655)
T PRK03584 172 DFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELR-AALPSLEHVVVVPYLGPAA---AAAALPGALLWEDFL 247 (655)
T ss_pred CCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEecCCCcc---cccccCCcccHHHHh
Confidence 99999999999999999999987532 1222211 1223445666655322100 000111234566665
Q ss_pred HcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHH-HhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 019388 206 QLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283 (341)
Q Consensus 206 ~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 283 (341)
... ...........+++++|+|||||||.||||++||++++.+ .......+ ++..+|++++..++.|..+. .
T Consensus 248 ~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~-~ 321 (655)
T PRK03584 248 APAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFFWYTTCGWMMWN-W 321 (655)
T ss_pred hccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEEEcCCchHHhHH-H
Confidence 422 1122234456789999999999999999999999987654 44444444 78889999999999988653 3
Q ss_pred HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 284 ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 284 ~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
++.+++.|+++++..+ ++..+++.|+++++|++.++|++++.+.+
T Consensus 322 ~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 371 (655)
T PRK03584 322 LVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEK 371 (655)
T ss_pred HHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHh
Confidence 6688999999999752 78999999999999999999999998875
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=263.30 Aligned_cols=267 Identities=22% Similarity=0.291 Sum_probs=219.2
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|...++++|+++|+.+. + ..+||.||.+.+.++|+.|.+.|+++|++|+++++|+.+++++++|
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a 80 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA 80 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999875 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++..+.+++..+++.++++++|++.+....+....+... ............ .........+
T Consensus 81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~ 152 (523)
T PRK08316 81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLGG------REAPGGWLDF 152 (523)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeecccc------cccccchhhH
Confidence 99999999999999999999999999999999999987766654433221 111111110000 0011124455
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
.++...............+++++++|||||||.||+|.+||.+++.........+ ++..+|++++.+|++|.+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~ 227 (523)
T PRK08316 153 ADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQL 227 (523)
T ss_pred HHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhhH
Confidence 5554433222234456778999999999999999999999999999888776666 78899999999999999998
Q ss_pred HH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 282 ~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.. ++.++..|+++++.+. +++.+++.|+++++|++.++|+++..++++.
T Consensus 228 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 278 (523)
T PRK08316 228 DVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHP 278 (523)
T ss_pred HHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCc
Confidence 76 5667899999999865 9999999999999999999999999988654
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=268.40 Aligned_cols=261 Identities=17% Similarity=0.191 Sum_probs=198.1
Q ss_pred hCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecC
Q 019388 55 RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD 134 (341)
Q Consensus 55 ~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 134 (341)
..++++++++. + ..+..+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+++
T Consensus 96 ~~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~ 171 (652)
T TIGR01217 96 AAGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSP 171 (652)
T ss_pred cCCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCC
Confidence 35788898875 3 3455688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHhhcCceeEEEEcCCC---------hhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHH
Q 019388 135 TLGANAVEFIINHAEVSIAFVQENK---------IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFL 205 (341)
Q Consensus 135 ~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (341)
.++.+++.+++++++++++|+++.. .+.+.+... ..+.++.++.++........ .. .......|+++.
T Consensus 172 ~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~~ 248 (652)
T TIGR01217 172 DFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRK-ELPTLRAVVHIPYLGPRETE-AP-KIDGALDLEDFT 248 (652)
T ss_pred CCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHh-cCCCccEEEEEeCCCCcccc-cc-cccCcccHHHHH
Confidence 9999999999999999999998754 222322222 22445666665432110000 00 001234566665
Q ss_pred HcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHH-HhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 019388 206 QLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283 (341)
Q Consensus 206 ~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 283 (341)
... ...........+++++|+|||||||.||||+++|++++.+ .......+ ++.++|++++..|+.|..+. .
T Consensus 249 ~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~-~ 322 (652)
T TIGR01217 249 AAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLFYYTTTGWMMWN-W 322 (652)
T ss_pred hcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEEEeCCcchhhhH-H
Confidence 442 1112223445689999999999999999999999997643 33433444 78889999999999998643 3
Q ss_pred HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 284 ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 284 ~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
++.+++.|++++++.+ ++..++++|+++++|++..+|.+++.+.+
T Consensus 323 ~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~ 372 (652)
T TIGR01217 323 LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRK 372 (652)
T ss_pred HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHh
Confidence 5689999999999852 67899999999999999888877766653
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=262.60 Aligned_cols=266 Identities=16% Similarity=0.136 Sum_probs=213.4
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|++.++++|+++++++. + +.+||.||.+.++++|..|.+.|+++|++|+++++|++++++++|
T Consensus 21 ~~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 91 (527)
T TIGR02275 21 QDKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFF 91 (527)
T ss_pred cCCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 3567999999999999999999753 3 589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh----hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
||+++|++++++++..+.+++.++++.+++++++++..... ..........+.+..++.......
T Consensus 92 a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 160 (527)
T TIGR02275 92 ALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV----------- 160 (527)
T ss_pred HHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC-----------
Confidence 99999999999999999999999999999999999876421 111111111233344444332210
Q ss_pred cceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
.......+.............++++++++|||||||.||||++||+++..++......+ .+..+|++++.+|++
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~ 234 (527)
T TIGR02275 161 -EAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA 234 (527)
T ss_pred -cchhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence 00111111111111223345678999999999999999999999999999888877766 788899999999999
Q ss_pred HHHHHHH--HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 277 h~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++...+
T Consensus 235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 293 (527)
T TIGR02275 235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASK 293 (527)
T ss_pred hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccc
Confidence 9999874 6778999999998765 899999999999999999999999998876543
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=243.23 Aligned_cols=273 Identities=17% Similarity=0.169 Sum_probs=234.6
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|.+.++++||++|+++. + +.+||+||+++++++|.+|.++|+++||+|.+.+||..+|++.+|
T Consensus 26 ~d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~F 96 (542)
T COG1021 26 QDRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFF 96 (542)
T ss_pred cCCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHH
Confidence 4578999999999999999999964 3 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCC----hhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK----IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
|++++|..+|..-|.....|+.+..+...++.+|.++.. ...+.+......+.++.+++.++....
T Consensus 97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~---------- 166 (542)
T COG1021 97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP---------- 166 (542)
T ss_pred HHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc----------
Confidence 999999999999999999999999999999999988842 223333333445788888888654321
Q ss_pred cceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 019388 197 SCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (341)
Q Consensus 197 ~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (341)
...+..+... ....+.++.+.+++++...|-||||.||.|..||.....++..-++.+ +++..++.++.+|.
T Consensus 167 --~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~ 239 (542)
T COG1021 167 --SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPA 239 (542)
T ss_pred --chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEeccc
Confidence 2233333333 445556777889999999999999999999999999999999977777 99999999999999
Q ss_pred HHHHHHHH--HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHhhhhhcc
Q 019388 276 AHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCTHKLT 339 (341)
Q Consensus 276 ~h~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 339 (341)
.|.|-+.+ .+..++.|+++|+.+. +++..+.+|+++++|+..+||.+...+++..+..-...++
T Consensus 240 AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsS 306 (542)
T COG1021 240 AHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSS 306 (542)
T ss_pred ccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchh
Confidence 99999997 7889999999999887 9999999999999999999999999999998876555443
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=260.56 Aligned_cols=247 Identities=13% Similarity=0.168 Sum_probs=205.0
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
+++.++|.+.++++|+++|+.+. + .++||.||.+++.++|++|.+.|. +|++|+++++|++++++++|||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN----D-----RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC----C-----cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 36789999999999999999864 3 579999999999999999999884 8999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
+++|++++|+++.++.+++..+++++++++++++......+... ...++.++. +.
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~------------------~~ 125 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE-------EGRVIEIDE------------------WK 125 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc-------cceEEEehh------------------hh
Confidence 99999999999999999999999999999999998655433211 112222221 11
Q ss_pred HHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 019388 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282 (341)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 282 (341)
+................+++++++|||||||.||||+++|+++..++......+ ++..+|+++...|++|..++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l~ 200 (487)
T PRK07638 126 RMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFLY 200 (487)
T ss_pred hhhhhccccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHHH
Confidence 111111111111122356789999999999999999999999999888776666 788999999999999999887
Q ss_pred HHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 283 ~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.
T Consensus 201 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 248 (487)
T PRK07638 201 GAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKE 248 (487)
T ss_pred HHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC
Confidence 78889999999999876 999999999999999999999999999865
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=260.94 Aligned_cols=252 Identities=23% Similarity=0.258 Sum_probs=208.9
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..+.++|.+.++.+|+++|+.+. + +.+||.||.++++++|+.|.+ .|+++|++|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46889999999999999999863 3 689999999999999999975 7999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++..+++++++++++++++....+...... .....++.+. .+
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------~~ 132 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--SYVQRVISIT------------------SL 132 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhc--cCcceEEEec------------------ch
Confidence 999999999999999999999999999999999998765544332211 1222333332 12
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
.+..... ........++++++++|||||||.||+|.++|+++..+.......+ ++..+|++++.+|++|.+|+
T Consensus 133 ~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 205 (496)
T PRK06839 133 KEIEDRK--IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGGI 205 (496)
T ss_pred HhhhccC--CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhhH
Confidence 2222221 1122344568999999999999999999999999987777655555 78889999999999999998
Q ss_pred HH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 282 ~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.. ++.++..|+++++.+. +++.+++.++++++|++.++|.+++.+++..
T Consensus 206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 256 (496)
T PRK06839 206 GLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCS 256 (496)
T ss_pred HHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCc
Confidence 77 6778999999988765 9999999999999999999999999998754
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=261.65 Aligned_cols=276 Identities=17% Similarity=0.208 Sum_probs=216.7
Q ss_pred CcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCC
Q 019388 23 GPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPG 102 (341)
Q Consensus 23 ~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~ 102 (341)
+.+||+..+.... +...++.+++.+.++++|+++|+.+. .+. +.+||.||.+++.++|+.|.+.|+++|
T Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g 80 (546)
T PLN02330 12 EHIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLRKG 80 (546)
T ss_pred ceeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3456655555322 23578999999999999999999763 222 579999999999999999999999999
Q ss_pred CeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEecc
Q 019388 103 DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182 (341)
Q Consensus 103 ~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (341)
++|+++++|++++++++|||+++|++++|+++..+.+++.+++++++++++++++.....+... .. .++.++.
T Consensus 81 ~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~-~~i~~~~ 153 (546)
T PLN02330 81 QVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GL-PVIVLGE 153 (546)
T ss_pred CEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CC-cEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999876655322 11 2334332
Q ss_pred CCchhhHHhhhhCccceeHHHHHHcCCC---CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhc
Q 019388 183 VSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~ 259 (341)
... .....|.+++..... .........+++++++|||||||.||||+++|+++..++......+
T Consensus 154 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--- 220 (546)
T PLN02330 154 EKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV--- 220 (546)
T ss_pred CCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc---
Confidence 211 112345555543311 1122334568999999999999999999999999988765422111
Q ss_pred cccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 260 GKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 260 ~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..+....++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.
T Consensus 221 ~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 292 (546)
T PLN02330 221 GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKN 292 (546)
T ss_pred CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhC
Confidence 112234568999999999999876 7788999999999876 999999999999999999999999999864
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=263.37 Aligned_cols=270 Identities=18% Similarity=0.217 Sum_probs=209.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|++.++++|+++|+++. ++. +.+||+||.++++++|++|.+.|+++|++|+++++|+.++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 85 (534)
T PRK05852 13 DFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL 85 (534)
T ss_pred hhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHH
Confidence 45678999999999999999999864 332 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|||+++|++++|+++.++.+++.++++.++++++|++............ ......+.+....... . .....
T Consensus 86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~-~~~~~ 156 (534)
T PRK05852 86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGPS-----G-GTLSV 156 (534)
T ss_pred HHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeeccccccc-----c-ccccc
Confidence 9999999999999999999999999999999999998754322111111 0111112222111000 0 00000
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
.+...... ...........++.++++|||||||.||||+++|+++..++......+ ++..+|++++.+|++|.+
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~ 230 (534)
T PRK05852 157 HLDAATEP-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHGH 230 (534)
T ss_pred ccccccCC-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchhH
Confidence 01000000 000111122346789999999999999999999999999998887777 788999999999999999
Q ss_pred HHHH-HHHHHhcCceEEEec---CCHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 280 DQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 280 g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
|+.. ++.++..|+++++.. +++..+++.|+++++|.++++|+++..|.+...
T Consensus 231 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 286 (534)
T PRK05852 231 GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAA 286 (534)
T ss_pred HHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcc
Confidence 9987 788889999988854 278899999999999999999999999987654
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=259.16 Aligned_cols=255 Identities=25% Similarity=0.406 Sum_probs=196.3
Q ss_pred HHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCe
Q 019388 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128 (341)
Q Consensus 49 l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 128 (341)
|++.++++||++|+++. ++ +++||+||+++++++|..|.++|+++|++|+++++|+++++++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 67899999999999871 22 79999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCChhHHHHHhhcCceeEEEE----cCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHH
Q 019388 129 YVPLYDTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEF 204 (341)
Q Consensus 129 ~v~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (341)
++|+++.++.+++.++++++++++||+ +......+..... .......++.++........ .......
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 143 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFK-QEDPSSSIIILDRDDLPKKE--------ALKSASL 143 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHT-TSTTTEEEEEESHSSCTTCH--------HHHHHHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhc-cccccccccccccccccccc--------ccccccc
Confidence 999999999999999999999999998 2221122222211 11234556666644321000 0000000
Q ss_pred HHcCCCCCCCCC-CCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH-H
Q 019388 205 LQLGTLDCELPP-KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ-I 282 (341)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~-~ 282 (341)
.. ... .. ..++++++++|||||||.||+|.++|+++++.+..+. +... .+++ |++++.+|++|.+|+ .
T Consensus 144 ~~--~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~~ 213 (417)
T PF00501_consen 144 SD--EPQ---SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLIS 213 (417)
T ss_dssp CH--CSH---STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHHH
T ss_pred cc--ccc---cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeeccccccccccc
Confidence 00 000 00 0568999999999999999999999999999988864 1110 1333 699999999999999 5
Q ss_pred HHHHHHhcCceEEEecC-C---HHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 283 IETHCIHKGCSIGFWRG-D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 283 ~~l~~l~~G~~~v~~~~-~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.++.++..|+++++++. . ++.+++.|+++++|+++++|+++..|+++.
T Consensus 214 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~ 265 (417)
T PF00501_consen 214 ALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSP 265 (417)
T ss_dssp HHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhcccccccccccccccccccccccc
Confidence 59999999999999986 2 477899999999999999999999999844
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=262.80 Aligned_cols=251 Identities=16% Similarity=0.175 Sum_probs=206.8
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCC-CCCCeEEEEcCCChHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.++.++|.+.+ .|+++|+++. + ..+||.||.++++++|..|.+.|+ ++|++|+++++|+++++++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 57888888764 7999998764 3 479999999999999999999999 7999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++..++++++++++|++.+....+.... .+.. +++.++.. .+
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~-~~i~~~~~----------------~~ 131 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGV-RVLDVDTP----------------AY 131 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCc-eEEEccch----------------hh
Confidence 9999999999999999999999999999999999887655443321 1122 33333321 12
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
.+++.......+.....++++++++|||||||.||||.++|+++...+......+ ++..+|++++.+|++|.+|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~ 206 (540)
T PRK13388 132 AELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNAV 206 (540)
T ss_pred hhhhccccCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcch
Confidence 2333211111222335679999999999999999999999999998888877776 88899999999999999999
Q ss_pred HH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 282 ~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.. ++.++..|+++++.+. ++..+++.|+++++|++.++|..+..++..
T Consensus 207 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~ 256 (540)
T PRK13388 207 MAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILAT 256 (540)
T ss_pred HHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhC
Confidence 87 5568899999998875 899999999999999999999999888753
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=260.60 Aligned_cols=268 Identities=23% Similarity=0.374 Sum_probs=214.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....+++++|.+.++++|+++|+++. +.. +.+||.||.+.++++|.+|.+.|+++|++|+++++|++++++++
T Consensus 15 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~ 87 (558)
T PRK12583 15 LLTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQ 87 (558)
T ss_pred cccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence 34468999999999999999999875 333 67999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh-----hHHhhCc------------ccCCcccEEEEecc
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP------------RCCLYLKTIVSFAN 182 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~------------~~~~~~~~~i~~~~ 182 (341)
|||+++|++++++++.++.+++..++++++++++|+++.... .+..... ...+.+..++..+.
T Consensus 88 ~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (558)
T PRK12583 88 FATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP 167 (558)
T ss_pred HHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC
Confidence 999999999999999999999999999999999999875321 1111100 01122333443332
Q ss_pred CCchhhHHhhhhCccceeHHHHHHcCCC------CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhh
Q 019388 183 VSSSQKKEAEELGVSCFSWEEFLQLGTL------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~ 256 (341)
... .....|++....... ........++++++++|||||||.||+|.++|+++..++......+
T Consensus 168 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~ 237 (558)
T PRK12583 168 APP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL 237 (558)
T ss_pred CCC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh
Confidence 211 113344444332210 1112334578899999999999999999999999999888877766
Q ss_pred hhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 257 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
++..+|++++.+|++|.+|... ++.++..|+++++... ++..+++.++++++|++.++|+++..+++.
T Consensus 238 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 308 (558)
T PRK12583 238 -----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDH 308 (558)
T ss_pred -----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcc
Confidence 8889999999999999999987 7888999999987643 899999999999999999999999888754
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=260.79 Aligned_cols=269 Identities=22% Similarity=0.353 Sum_probs=216.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++|+++|+++. ++. +.+||+||.++++++|..|.+.|+++|++|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~ 85 (559)
T PRK08315 13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ 85 (559)
T ss_pred hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence 34568999999999999999999875 443 67999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh-----hHHhhCcc------------cCCcccEEEEecc
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLPR------------CCLYLKTIVSFAN 182 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~------------~~~~~~~~i~~~~ 182 (341)
|||+++|++++|+++..+.+++..++++++++++++++.... .+.....+ ..+..+.++.++.
T Consensus 86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (559)
T PRK08315 86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD 165 (559)
T ss_pred HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence 999999999999999999999999999999999999875421 11111110 0122344444443
Q ss_pred CCchhhHHhhhhCccceeHHHHHHcCC----C--CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhh
Q 019388 183 VSSSQKKEAEELGVSCFSWEEFLQLGT----L--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~ 256 (341)
... .....++++..... . .........+++++++|||||||.||+|.++|+++..++..+...+
T Consensus 166 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~ 235 (559)
T PRK08315 166 EKH----------PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM 235 (559)
T ss_pred cCC----------cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence 211 11344555543221 0 1112334578899999999999999999999999999988877766
Q ss_pred hhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 257 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
++..+|+++..+|++|.+|+.. ++.++..|+++++... ++..+++.++++++|++.++|+++..++...
T Consensus 236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~ 307 (559)
T PRK08315 236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHP 307 (559)
T ss_pred -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCc
Confidence 8889999999999999999987 7889999999986543 9999999999999999999999998887643
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=262.43 Aligned_cols=275 Identities=21% Similarity=0.300 Sum_probs=209.8
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.+..+++.+.+..+|+++|+.+. + ..+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 90 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV 90 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 45889999999999999999753 2 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCccc------CCcccEEEEeccCCchhhHHhhhhCc
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC------CLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
+++|++++|+++.++.+++.+++++++++++|++++..+......... ......++.++...............
T Consensus 91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
T PLN02479 91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK 170 (567)
T ss_pred HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence 999999999999999999999999999999999987655443322110 01122344443221100000000111
Q ss_pred cceeHHHHHHcCCCCCC-CCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 019388 197 SCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (341)
+...|++++........ ......+++++++|||||||.||||++||+++...+......+ ++..+|++++.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~ 245 (567)
T PLN02479 171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM 245 (567)
T ss_pred CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence 23456666544311111 1222345678899999999999999999999987776655555 77889999999999
Q ss_pred HHHHHHHHH-HHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 276 AHIYDQIIE-THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 276 ~h~~g~~~~-l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+|.+|+... +..+..|.++++..+++..+++.++++++|++.++|+++..|.++..
T Consensus 246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 302 (567)
T PLN02479 246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPK 302 (567)
T ss_pred hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhh
Confidence 999998764 34566777766655699999999999999999999999999987643
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=262.09 Aligned_cols=262 Identities=15% Similarity=0.181 Sum_probs=205.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCC----CcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGK----VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~----~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~ 117 (341)
..++.++|.+.++++|+++|+++. ++. ...++++||+||.++++++|++|.+.|+++|++|+++++|++++++
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~ 81 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA 81 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence 467889999999999999999875 321 1224479999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCC--hhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhC
Q 019388 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (341)
Q Consensus 118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 195 (341)
++|||+++|++++|+++.++.+++.+++++++++++|++... ...+... .......++.++....
T Consensus 82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~---------- 148 (552)
T PRK09274 82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW---GKPSVRRLVTVGGRLL---------- 148 (552)
T ss_pred HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc---Cccchhheeccccccc----------
Confidence 999999999999999999999999999999999999997521 1111111 1122333444332100
Q ss_pred ccceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 019388 196 VSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274 (341)
Q Consensus 196 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (341)
.....++++.... ..........++++++++|||||||.||+|+++|+++...+......+ ++..+|+.++.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p 223 (552)
T PRK09274 149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP 223 (552)
T ss_pred cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence 0122444443222 112223345678999999999999999999999999999988877776 7889999999999
Q ss_pred hHHHHHHHHHHHHHhcCceEEEec--------CCHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 275 LAHIYDQIIETHCIHKGCSIGFWR--------GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 275 l~h~~g~~~~l~~l~~G~~~v~~~--------~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
++|.+++ ..|+++++.+ +++..+++.|+++++|+++++|++++.|++...
T Consensus 224 l~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 281 (552)
T PRK09274 224 LFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGE 281 (552)
T ss_pred HHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhh
Confidence 9887654 3577777753 278999999999999999999999999988654
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=271.07 Aligned_cols=266 Identities=15% Similarity=0.211 Sum_probs=203.6
Q ss_pred CCCCHHHHHHHHHHhCCC-CcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
+..++.++|.+.++++|+ +.++.+. + ++++||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~ 272 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI 272 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence 457899999999999998 5666532 1 15799999999999999999987 589999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhh-CcccCCcccEEEEeccCCchhhHHhhhhCccc
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC-LPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 198 (341)
|||+++|++++|+++.++.+++.+++++++++++|++++..+..... .......+ .++.+++..... . .....
T Consensus 273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~----~-~~~~~ 346 (718)
T PRK08043 273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQV-RWVYLEDLKDDV----T-TADKL 346 (718)
T ss_pred HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccc-cEEEhhhhhhhc----c-hhHHH
Confidence 99999999999999999999999999999999999987654321100 00011111 222222211000 0 00000
Q ss_pred eeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 019388 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
....+.. ..........++++++++|||||||.||||++||+++.+.+......+ +++.+|++++.+|++|.
T Consensus 347 ~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~Pl~h~ 418 (718)
T PRK08043 347 WIFAHLL---MPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALPLFHS 418 (718)
T ss_pred HHHHHHh---CCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCcchhh
Confidence 0000000 001111234678999999999999999999999999999888776666 78899999999999999
Q ss_pred HHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 279 YDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 279 ~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+|+.. ++.++..|+++++.+. +...+++.++++++|+++++|+++..+.+.
T Consensus 419 ~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~ 472 (718)
T PRK08043 419 FGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF 472 (718)
T ss_pred hhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhh
Confidence 99976 7889999999999864 678889999999999999999999877653
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=256.69 Aligned_cols=251 Identities=17% Similarity=0.233 Sum_probs=207.2
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCChHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
..++.++|.+.+. ++++++.+. + +++||.||.++++++|++|.++ |++++++|+++++|+++++++++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~l 72 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLG 72 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578899988775 788888764 3 5799999999999999999997 88999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++..++++++++++|++++....+.... ... .++.++. ..
T Consensus 73 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~~ 131 (529)
T PRK07867 73 AAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------PA 131 (529)
T ss_pred HHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------cc
Confidence 99999999999999999999999999999999999987665433221 111 2222221 12
Q ss_pred HHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
+.+++... ..........++++++++|||||||.||||+++|+++..++..+...+ +++.+|++++.+|++|.+
T Consensus 132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~ 206 (529)
T PRK07867 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHSN 206 (529)
T ss_pred HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHHH
Confidence 33333322 111223345678999999999999999999999999998888877776 788899999999999999
Q ss_pred HHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 280 g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+.+..++..
T Consensus 207 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~ 258 (529)
T PRK07867 207 AVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLAT 258 (529)
T ss_pred HHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhC
Confidence 9987 6678999999998765 899999999999999999999999988754
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=263.30 Aligned_cols=262 Identities=18% Similarity=0.147 Sum_probs=204.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|++.++.+|+++++++....+...+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~ 96 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAF 96 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHH
Confidence 3457899999999999999999987410001233457899999999999999999987 899999999999999999999
Q ss_pred HHHHhcCCeEEee-cCCCC--hhHHHHHhhcCceeEEEEcCCChhhHHhhCcccC-CcccEEEEeccCCchhhHHhhhhC
Q 019388 120 EACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEELG 195 (341)
Q Consensus 120 lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 195 (341)
|||+++|++++|+ ++..+ .+++.+++++++++++|++++..+.+........ .....++.++....
T Consensus 97 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 166 (631)
T PRK07769 97 FGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD---------- 166 (631)
T ss_pred HHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc----------
Confidence 9999999999999 44443 6889999999999999999876554433221110 11223333332110
Q ss_pred ccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 019388 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (341)
.. ..........++++++++|||||||.||||++||+++..++......+ ++..+|++++.+|+
T Consensus 167 --------~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~Pl 230 (631)
T PRK07769 167 --------EV---GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGVSWLPF 230 (631)
T ss_pred --------cc---ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEEEeCCC
Confidence 00 000111234678999999999999999999999999999888876666 78889999999999
Q ss_pred HHHHHHHHHHHHHhcCceEEEec---C--CHHHHHHHhhhhcC---cEEeccchHHHHHHH
Q 019388 276 AHIYDQIIETHCIHKGCSIGFWR---G--DVRYLMEDIQELKP---TMFSGVPRVYDRIYT 328 (341)
Q Consensus 276 ~h~~g~~~~l~~l~~G~~~v~~~---~--~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~ 328 (341)
+|.+|+..++.+++.|+++++++ + ++..+++.+.++++ +++.++|.++..++.
T Consensus 231 ~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~ 291 (631)
T PRK07769 231 FHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAA 291 (631)
T ss_pred cCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHH
Confidence 99999988777788899998874 2 88899999999886 789999999877764
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=255.98 Aligned_cols=264 Identities=17% Similarity=0.201 Sum_probs=211.1
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|...++++|+++++.+. + ..+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l 75 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVWG----D-----RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF 75 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEEC----C-----ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999998864 2 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++++++.++.+++..++++++++.++++++..+....... .......++.++.... ...
T Consensus 76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~ 142 (528)
T PRK07470 76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRA-ASPDLTHVVAIGGARA------------GLD 142 (528)
T ss_pred HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHh-hCCcCceEEEeCCCcc------------ccc
Confidence 999999999999999999999999999999999999876554433221 2234445555543221 234
Q ss_pred HHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
++++.... ...........+++++++|||||||.||+|+++|+++...+......+ ..+...+|+++..+|++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~ 219 (528)
T PRK07470 143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGA 219 (528)
T ss_pred HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHH
Confidence 55554432 122223345678999999999999999999999999976655422221 11456789999999999999
Q ss_pred HHHHHHHHHhcCceEEEecC---CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 280 DQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
|+..++ .++.|+++++.+. +++.+++.|+++++|++.++|++++.+.+..
T Consensus 220 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 272 (528)
T PRK07470 220 GIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHP 272 (528)
T ss_pred HHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCc
Confidence 987654 5667777776642 8999999999999999999999999987643
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=255.37 Aligned_cols=263 Identities=19% Similarity=0.223 Sum_probs=212.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++|+++|+++. + ..+||.||.+.+.+++..|.+.|+++|++|+++++|++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~ 79 (524)
T PRK06188 9 HSGATYGHLLVSALKRYPDRPALVLG----D-----TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAI 79 (524)
T ss_pred cCCccHHHHHHHHHHHCCCCeEEEEC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 34568999999999999999999864 2 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC-ChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 198 (341)
|||+++|++++|+++..+.+++..+++.++++.++++.. ....+..... ....+..++.++.....
T Consensus 80 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------ 146 (524)
T PRK06188 80 GAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLA-RVPSLKHVLTLGPVPDG------------ 146 (524)
T ss_pred HHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhh-hcCCceEEEEeCCccch------------
Confidence 999999999999999999999999999999999999886 3333322221 22333445544432210
Q ss_pred eeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 019388 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
....................++++++++|||||||.||+|.++|.++...+......+ ++..+|++++.+|++|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~ 221 (524)
T PRK06188 147 VDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHA 221 (524)
T ss_pred hhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhh
Confidence 0011111111111111222446699999999999999999999999999988877766 88899999999999999
Q ss_pred HHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 279 ~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+|+. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 222 ~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~ 273 (524)
T PRK06188 222 GGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHP 273 (524)
T ss_pred hhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCc
Confidence 8875 5677899999999887 9999999999999999999999999988753
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=257.20 Aligned_cols=278 Identities=20% Similarity=0.290 Sum_probs=215.1
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHH
Q 019388 37 ESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116 (341)
Q Consensus 37 ~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~ 116 (341)
..+....++.++|.+.++.+|+++++.+. + +.+||.||.+++.++|..|.++|+++|++|+++++|+++++
T Consensus 27 ~~~~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~ 97 (567)
T PRK06178 27 EYPHGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFH 97 (567)
T ss_pred CCCcCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHH
Confidence 33456678999999999999999999864 3 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCc--hhhH--Hhh
Q 019388 117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS--SQKK--EAE 192 (341)
Q Consensus 117 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~--~~~ 192 (341)
+++|||+++|++++|+++..+.+++.+++++++++++++++...+.+.+..... ....++..+.... .... ...
T Consensus 98 ~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~ 175 (567)
T PRK06178 98 IVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPD 175 (567)
T ss_pred HHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEecccccccccccccccc
Confidence 999999999999999999999999999999999999999998776655443222 2344443332110 0000 000
Q ss_pred hhC---ccceeHHHHHHcC---CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCC
Q 019388 193 ELG---VSCFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266 (341)
Q Consensus 193 ~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~ 266 (341)
... .....+.++.... ...........+++++++|||||||.||+|++||+++...+....... ..+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~ 251 (567)
T PRK06178 176 SLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGED 251 (567)
T ss_pred ccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCC
Confidence 000 0001111222111 111122345678999999999999999999999999988766543321 256788
Q ss_pred cEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 267 DTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 267 d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|.+.++|..+..+++.
T Consensus 252 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~ 316 (567)
T PRK06178 252 SVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDH 316 (567)
T ss_pred cEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhC
Confidence 99999999999999875 7888999999999886 999999999999999999999999888753
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=261.01 Aligned_cols=258 Identities=15% Similarity=0.154 Sum_probs=200.8
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCC---CCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
..++.+++++.++++|+++++++. +. ..+.++.+||+||.++++++|++|.+. +++||+|+++++|+++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~ 108 (612)
T PRK12476 33 GTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAG 108 (612)
T ss_pred cCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHH
Confidence 478999999999999999999875 31 123457899999999999999999986 89999999999999999999
Q ss_pred HHHHHhcCCeEEee-cCCCC--hhHHHHHhhcCceeEEEEcCCChhhHHhhCcccC-CcccEEEEeccCCchhhHHhhhh
Q 019388 119 MEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEEL 194 (341)
Q Consensus 119 ~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 194 (341)
+|||+++|++++|+ ++.++ .+++.+++++++++++|++++....+........ .....++.++....
T Consensus 109 ~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------- 179 (612)
T PRK12476 109 FFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD--------- 179 (612)
T ss_pred HHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc---------
Confidence 99999999999999 56665 7899999999999999998876554433221110 11233444432110
Q ss_pred CccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcccc-CCCCcEEEEec
Q 019388 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSFL 273 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~~ 273 (341)
............++++++++|||||||.||||+++|+++.+++......+ + +.++|++++.+
T Consensus 180 ------------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~~ 242 (612)
T PRK12476 180 ------------SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVSWL 242 (612)
T ss_pred ------------cccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEEeC
Confidence 00001111234568999999999999999999999999998877765555 6 67889999999
Q ss_pred ChHHHHHHHHHHHHHhcCceEEEec---C--CHHHHHHHhh--hhcCcEEeccchHHHHHHHH
Q 019388 274 PLAHIYDQIIETHCIHKGCSIGFWR---G--DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 274 pl~h~~g~~~~l~~l~~G~~~v~~~---~--~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~ 329 (341)
|++|.+|+..++.+++.|++++++. + ++..+++.++ ++++|++.++|+++..++..
T Consensus 243 Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~ 305 (612)
T PRK12476 243 PLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQ 305 (612)
T ss_pred CcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHH
Confidence 9999999987665555566555543 2 7889999994 58999999999998888764
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=267.83 Aligned_cols=243 Identities=16% Similarity=0.201 Sum_probs=199.6
Q ss_pred CCHHHHHHHHHHh--CCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 43 ESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 43 ~tl~~~l~~~~~~--~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
.++.++|.+.+.+ +||++|+... ..+||+||.++++++|+.|.++|+++|++|+++++|+++++++++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3788999988886 7999998743 259999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.+++++++++++|++......+... .++ .
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~ 123 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E 123 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence 9999999999999999999999999999999999987543322110 000 0
Q ss_pred HHHHHHcC--CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhh-hhhhhccccCCCCcEEEEecChHH
Q 019388 201 WEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD-QMFVVTGKVCSEEDTYFSFLPLAH 277 (341)
Q Consensus 201 ~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~h 277 (341)
...+.... ..........++++++++|||||||.||||+++|+++..++..+. ..+ ++..+|++++..|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 198 (705)
T PRK06060 124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF 198 (705)
T ss_pred hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence 01111110 011112234568999999999999999999999999998876653 334 6788999999999999
Q ss_pred HHHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 278 IYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 278 ~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~ 254 (705)
T PRK06060 199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSC 254 (705)
T ss_pred hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhc
Confidence 999865 7889999999999874 8888999999999999999999999988654
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=286.07 Aligned_cols=273 Identities=15% Similarity=0.094 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCC---CcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGK---VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~---~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
..++.++|++.++++|+++|+++. +.. ....+++||+||.++++++|++|.++|+++|++|+++++|+++++++
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~ 311 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA 311 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence 468999999999999999999864 211 12347899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh---hhHHhhCcccC---CcccEEEEeccCCchhhHHhh
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---PSILSCLPRCC---LYLKTIVSFANVSSSQKKEAE 192 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~ 192 (341)
+|||+++|++++|+++.++.+++.++++++++++++++.... ..+........ ..+..+. +........
T Consensus 312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---- 386 (1389)
T TIGR03443 312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALA-LQDDGSLVG---- 386 (1389)
T ss_pred HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEE-ecccccccc----
Confidence 999999999999999999999999999999999999876421 11111111000 0111111 111100000
Q ss_pred hhCccceeHHHHHHcC---CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEE
Q 019388 193 ELGVSCFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 269 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (341)
........+..... ..........++++++++|||||||.||||+++|+++.+.+......+ ++..+|++
T Consensus 387 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 459 (1389)
T TIGR03443 387 --GSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF 459 (1389)
T ss_pred --cccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 00000000010000 001112234578999999999999999999999999999988877777 88899999
Q ss_pred EEecChHHHHHHHHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 270 FSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 270 l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
++..|++|+.++..++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+.
T Consensus 460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~ 523 (1389)
T TIGR03443 460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQ 523 (1389)
T ss_pred EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence 999999999998889999999999999763 678999999999999999999999988753
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=253.37 Aligned_cols=257 Identities=20% Similarity=0.326 Sum_probs=211.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.+++.+.+ .+|++.++... ++ +.+||.||.+.+.++|..|.++|+++|++|+++++|+++++++++|
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la 72 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA 72 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468899999999 99999998764 33 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++..+++.+++++++++......+....... ....++.++.... ..+
T Consensus 73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------~~~ 137 (504)
T PRK07514 73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA--GAPHVETLDADGT-------------GSL 137 (504)
T ss_pred HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc--CCceEEEecCCCc-------------ccH
Confidence 9999999999999999999999999999999999987766554432211 2222444433211 112
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
.+................+++++++|||||||.||+|.++|+++...+......+ ++..+|++++.+|++|..|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 212 (504)
T PRK07514 138 LEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHGL 212 (504)
T ss_pred HHhhhhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHHH
Confidence 2222111111122345678999999999999999999999999999988877666 78889999999999999998
Q ss_pred HH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 282 ~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.. ++.++..|+++++.+. ++..+++.+ .++|++.++|.++..+++.
T Consensus 213 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~ 260 (504)
T PRK07514 213 FVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQE 260 (504)
T ss_pred HHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcC
Confidence 86 7789999999999886 999999999 4799999999999988754
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=254.93 Aligned_cols=276 Identities=18% Similarity=0.254 Sum_probs=209.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCChHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
....++.++|.+.++++|+++|++.. + +.+||+||.++++++|+.|.+ .|+++|++|+++++|+++++++
T Consensus 21 ~~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~ 91 (562)
T PRK05677 21 DEYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVA 91 (562)
T ss_pred CccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHH
Confidence 44568999999999999999999853 3 579999999999999999997 5999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCc---hhhHHhh---
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS---SQKKEAE--- 192 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~--- 192 (341)
+|||+++|++++|+++.++.+++.+++++++++++|++++....+.+.... ..++.++..+.... .......
T Consensus 92 ~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (562)
T PRK05677 92 VFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAVV 169 (562)
T ss_pred HHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccch
Confidence 999999999999999999999999999999999999988765544333221 12333333221100 0000000
Q ss_pred --------hh-CccceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcccc
Q 019388 193 --------EL-GVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV 262 (341)
Q Consensus 193 --------~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~ 262 (341)
.. ......+.+.+... ..........++++++++|||||||.||||+++|+++..++......+ ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~ 246 (562)
T PRK05677 170 KHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM---GSN 246 (562)
T ss_pred hhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHh---ccC
Confidence 00 01123344444333 111122334678999999999999999999999999988876655443 112
Q ss_pred CC-CCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 263 CS-EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 263 ~~-~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.. ..+++++.+|++|.+|+.. ++..+..|+++++.+. ++..+++.|+++++|+++++|+++..+++.
T Consensus 247 ~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 317 (562)
T PRK05677 247 LNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN 317 (562)
T ss_pred CCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhC
Confidence 33 3468899999999999876 7778888888777653 889999999999999999999999988763
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=252.50 Aligned_cols=261 Identities=20% Similarity=0.257 Sum_probs=212.4
Q ss_pred CCHHHHHHHH-HHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 43 ESPWQFFCDS-AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 43 ~tl~~~l~~~-~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
+...+++.+. ++.+||++++... + ..+||.||.++++++|++|.+.|+++|++|+++++|+.+++++++|
T Consensus 4 ~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a 74 (508)
T TIGR02262 4 NAAEDLLDRNVVEGRGGKTAFIDD----I-----SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG 74 (508)
T ss_pred hHHHHHHHHHHhcccCCceEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 4566777776 5679999998753 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.++++.+++++++++......+.+.... .+..+.++..+.... ....+
T Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~ 142 (508)
T TIGR02262 75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGK-SPHLEHRVVVGRPEA-----------GEVQL 142 (508)
T ss_pred HHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhc-CCCccEEEEeCCCCc-----------ccccH
Confidence 999999999999999999999999999999999998776655443322 234455555543211 12234
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhh-hhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
.++..............++++++++|||||||.||+|.++|+++...+.. ....+ +++.+|+++..+|++|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 217 (508)
T TIGR02262 143 AELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFAYG 217 (508)
T ss_pred HHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHHHH
Confidence 44443332222233456789999999999999999999999999887765 33444 7888999999999999999
Q ss_pred HHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 281 QII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 281 ~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+.. ++.++..|+++++.+. ++..+++.|+++++|.++++|.++..++++
T Consensus 218 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~ 269 (508)
T TIGR02262 218 LGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLAD 269 (508)
T ss_pred HHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcC
Confidence 976 7778999999999864 899999999999999999999999887654
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=253.86 Aligned_cols=269 Identities=21% Similarity=0.268 Sum_probs=208.0
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.+..++|++.++.+|+++|+.+. + ..+||+||.+.++++|..|.+.|+++|++|+++++|++++++++|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~ 88 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG----D-----RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC----C-----eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 67889999999999999999764 2 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
+++|++++|+++..+.+++..++++++++.++++.+..+.+....... +.. ..+.++...... ......+..+++
T Consensus 89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 163 (545)
T PRK08162 89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALL-PGP-KPLVIDVDDPEY---PGGRFIGALDYE 163 (545)
T ss_pred HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhC-CCC-ceEEEecCcccc---ccCCCcccccHH
Confidence 999999999999999999999999999999999998776554432211 111 122222211100 000112234566
Q ss_pred HHHHcCCCCCC-CCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 203 EFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 203 ~~~~~~~~~~~-~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
++......... ......+++++++|||||||.||||+++|+++..++......+ ++..+|++++.+|++|.+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~ 238 (545)
T PRK08162 164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW 238 (545)
T ss_pred HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence 66544311111 1123445789999999999999999999999887776655544 67788999999999999998
Q ss_pred HHHHHHHhcCceEEEec-CCHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
...+...+.|+..++.. +++..+++.++++++|++.++|++++.|++..
T Consensus 239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~ 288 (545)
T PRK08162 239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAP 288 (545)
T ss_pred HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCc
Confidence 76444444455555444 49999999999999999999999999998643
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=282.61 Aligned_cols=247 Identities=18% Similarity=0.258 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++|+++|+.+. + ..+||+||.++++++|+.|.+.|+++|++|+++++|+.++++++||
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 468999999999999999999864 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++..+++++++++++++.+....+... ..+ .++.++.
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~~~------------------- 582 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCYNA------------------- 582 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeeccc-------------------
Confidence 999999999999999999999999999999999998754433111 011 1111111
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
..... ...+.....++++++++|||||||.||||+++|+++.+.+......+ +++.+|++++..|++|..++
T Consensus 583 --~~~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 654 (1296)
T PRK10252 583 --PLAPQ-GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVSV 654 (1296)
T ss_pred --ccccc-cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhhH
Confidence 00000 01112233578999999999999999999999999999999887777 88999999999999999999
Q ss_pred HHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
..++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++..
T Consensus 655 ~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~ 707 (1296)
T PRK10252 655 WEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASL 707 (1296)
T ss_pred HHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhh
Confidence 889999999999999762 8899999999999999999999999988764
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=304.33 Aligned_cols=249 Identities=18% Similarity=0.216 Sum_probs=212.7
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|.+.++++|+++|+++. + +++||+||.++++++|+.|.++|+++|++|+++++|++++++++|
T Consensus 3093 ~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~l 3163 (3956)
T PRK12467 3093 SERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALL 3163 (3956)
T ss_pred ccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHH
Confidence 3479999999999999999999875 3 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.++++++++++++++....+.+... ....++.++...
T Consensus 3164 avl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~---------------- 3221 (3956)
T PRK12467 3164 AVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD---------------- 3221 (3956)
T ss_pred HHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh----------------
Confidence 9999999999999999999999999999999999998654432111 111222322110
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
. .......+.....++++++++|||||||+||||+++|+++.+.+......+ +++.+|++++..|++|+.+
T Consensus 3222 ---~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 3292 (3956)
T PRK12467 3222 ---L-NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDGA 3292 (3956)
T ss_pred ---h-cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhHH
Confidence 0 001112223345788999999999999999999999999999999888877 8899999999999999999
Q ss_pred HHHHHHHHhcCceEEEecC---CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|++.
T Consensus 3293 ~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~ 3344 (3956)
T PRK12467 3293 QERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAED 3344 (3956)
T ss_pred HHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhc
Confidence 8889999999999999873 889999999999999999999999999764
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-31 Score=250.52 Aligned_cols=252 Identities=18% Similarity=0.218 Sum_probs=206.4
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.++|.+.++++|+++|+.+. + ..+||.||.+++.++|.+|.+.|++++++|+++++|++++++++|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~ 72 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAA 72 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57889999999999999998764 3 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
++.|++++|+++.++.+++..+++.+++++++++.+....... ....+.++..... .+.
T Consensus 73 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~~ 131 (497)
T PRK06145 73 SYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------ETPKIVIDAAAQA-------------DSR 131 (497)
T ss_pred HhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------ccceEEecCcccc-------------hhH
Confidence 9999999999999999999999999999999998765432210 1122223221100 011
Q ss_pred HHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 019388 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282 (341)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 282 (341)
.+..............++++++++|||||||.||+|+++|+++...+......+ ++..+|+++...|++|.+++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~ 206 (497)
T PRK06145 132 RLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGAFD 206 (497)
T ss_pred HHhccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhHHH
Confidence 111111111122345678999999999999999999999999987776655555 788999999999999999997
Q ss_pred H-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 283 I-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 283 ~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.
T Consensus 207 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~ 255 (497)
T PRK06145 207 LPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTV 255 (497)
T ss_pred HHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcC
Confidence 6 6778999999999876 999999999999999999999999998864
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=250.68 Aligned_cols=271 Identities=21% Similarity=0.277 Sum_probs=212.4
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
-++.++|.+.++++|+++|+.+. + +.+||.||.+.++++|+.|.+.|+++|++|+++++|++++++++|||
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~ 73 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGA 73 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 37899999999999999999864 3 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
+++|++++|+++.++.+++.++++++++++++++....+.+.+... .....+.++.++...... ...+..+++
T Consensus 74 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 146 (533)
T PRK07798 74 FKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLP-RLPKLRTLVVVEDGSGND------LLPGAVDYE 146 (533)
T ss_pred HhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhc-cCCCccEEEEecCCcccc------cCCccccHH
Confidence 9999999999999999999999999999999999877666554432 224455566665443210 111244666
Q ss_pred HHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhh----ccccC------CCCcEEEEe
Q 019388 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV----TGKVC------SEEDTYFSF 272 (341)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~----~~~~~------~~~d~~l~~ 272 (341)
+++........... ..++.++++|||||||.||+|+++|+++...+......+.. ....+ ..+++++..
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 147 DALAAGSPERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHHhccCCcCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 66654321111112 23445799999999999999999999998765543221100 00011 567899999
Q ss_pred cChHHHHHHHHHHHHHhcCceEEEec--C-CHHHHHHHhhhhcCcEEeccchHHHH-HHHHH
Q 019388 273 LPLAHIYDQIIETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDR-IYTGT 330 (341)
Q Consensus 273 ~pl~h~~g~~~~l~~l~~G~~~v~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~ 330 (341)
+|++|.++++.++.++..|+++++.+ . ++..+++.|+++++|.+.++|..+.. +.+.+
T Consensus 226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~ 287 (533)
T PRK07798 226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDAL 287 (533)
T ss_pred cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHh
Confidence 99999999998999999999999998 4 89999999999999999999876643 44443
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=252.95 Aligned_cols=260 Identities=15% Similarity=0.157 Sum_probs=210.5
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++ |+++|+++. + +.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG----E-----RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 5689999988886 999999864 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh----hhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcc
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
|++.|++++++.+....+++..+++.++++++++++... ...........+....++..+...
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------- 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG------------- 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence 999999988888878888999999999999999987532 111111222223344444333211
Q ss_pred ceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 019388 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (341)
...+.++..............++++++++|||||||.||||++||+++..++......+ ++..+|++++.+|++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h 234 (536)
T PRK10946 160 EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAAH 234 (536)
T ss_pred CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCccc
Confidence 22344444333222223445678999999999999999999999999999998877766 7889999999999999
Q ss_pred HHHHHH--HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 278 ~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++.+
T Consensus 235 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~ 290 (536)
T PRK10946 235 NYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAI 290 (536)
T ss_pred cccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhh
Confidence 998874 6778999999998765 8999999999999999999999999998764
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=299.15 Aligned_cols=250 Identities=19% Similarity=0.201 Sum_probs=211.6
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++|+++|+.+. + ..+||+||.++++++|+.|.++|+++|++|++++++++++++++||
T Consensus 1573 ~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~la 1643 (3956)
T PRK12467 1573 ARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLA 1643 (3956)
T ss_pred cccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHH
Confidence 468999999999999999999875 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.++++++++++++++......+... .. ..++.++...
T Consensus 1644 vlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~-~~~~~~~~~~----------------- 1700 (3956)
T PRK12467 1644 ILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DG-LRSLVLDQED----------------- 1700 (3956)
T ss_pred hhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cC-CcEEEecccc-----------------
Confidence 999999999999999999999999999999999987654332110 11 1233333211
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
.+........+.....++++++++|||||||+||||+++|+++.+.+......+ +++.+|++++..|++|++++
T Consensus 1701 -~~~~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 1774 (3956)
T PRK12467 1701 -DWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFDVSV 1774 (3956)
T ss_pred -chhccCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHHHHH
Confidence 011111111223345678999999999999999999999999999998877777 88899999999999999999
Q ss_pred HHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|++.
T Consensus 1775 ~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~ 1826 (3956)
T PRK12467 1775 WELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826 (3956)
T ss_pred HHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhh
Confidence 889999999999999863 789999999999999999999999999874
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=249.37 Aligned_cols=275 Identities=20% Similarity=0.280 Sum_probs=208.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.+.++|+++++.+. + +.+||.||.++++++|.+|.+.|+++|++|+++++|+.+++++++|
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la 90 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEFR----D-----RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFG 90 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEEC----C-----cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence 458999999999999999998764 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCC--hhhHHhhCcccCCcccEEEEeccCCchhhHHh---hhhCc
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCCLYLKTIVSFANVSSSQKKEA---EELGV 196 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~ 196 (341)
|+++|++++|+++..+.+++.+++++++++.+|+++.. .....+... . ..+..+++++.......... .....
T Consensus 91 ~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (541)
T TIGR03205 91 ALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLE-K-GLLDRLIVCEDDNWGKVGTPQAPIPADP 168 (541)
T ss_pred HHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhh-c-ccceEEEEecccccccccccccccCCCc
Confidence 99999999999999999999999999999999998632 111111111 1 12334444432210000000 00112
Q ss_pred cceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhh-ccccCCCCcEEEEecCh
Q 019388 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV-TGKVCSEEDTYFSFLPL 275 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~-~~~~~~~~d~~l~~~pl 275 (341)
....++++..............++++++++|||||||.||+|+++|+++....... ..+.. ........+++++.+|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~ 247 (541)
T TIGR03205 169 RIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPL 247 (541)
T ss_pred ccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccH
Confidence 24456666554322222344567899999999999999999999999987654422 21100 00122345789999999
Q ss_pred HHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 276 AHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 276 ~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
+|.+++.. ++.++..|+++++... ++..+++.|+++++|++.++|+++..|++
T Consensus 248 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 302 (541)
T TIGR03205 248 FHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALAN 302 (541)
T ss_pred HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHh
Confidence 99999887 7778999999988865 99999999999999999999999998875
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=274.13 Aligned_cols=270 Identities=17% Similarity=0.206 Sum_probs=214.8
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHH
Q 019388 38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (341)
Q Consensus 38 ~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~ 117 (341)
.+....++.+.+++.++++|+++|+.+. ++ +++||+||.++++++|+.|.+ ++++||+|+++++|++++++
T Consensus 610 ~~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~ 680 (1146)
T PRK08633 610 RKEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGAL 680 (1146)
T ss_pred hcCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHH
Confidence 3456688999999999999999999754 33 479999999999999999987 47999999999999999999
Q ss_pred HHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCc-ccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP-RCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
+++||+++|++++|+++..+.+++.++++++++++++++++..+.+..... ...+....++..++......
T Consensus 681 ~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 752 (1146)
T PRK08633 681 ANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS-------- 752 (1146)
T ss_pred HHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------
Confidence 999999999999999999999999999999999999998866554432110 01122334444443211000
Q ss_pred cceeHHHHHHcCCCC------CCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 019388 197 SCFSWEEFLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (341)
....+.+........ .......++++++++|||||||.||||.+||+++..++......+ +...+|+++
T Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l 827 (1146)
T PRK08633 753 KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVIL 827 (1146)
T ss_pred hhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 001122111111000 001345678999999999999999999999999999988877766 788899999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+.+|++|.+|+.. ++.++..|+++++.+. +++.+++.++++++|++.++|++++.+++.
T Consensus 828 ~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 889 (1146)
T PRK08633 828 SSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRN 889 (1146)
T ss_pred EcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhc
Confidence 9999999999987 7889999999998764 899999999999999999999999988864
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-30 Score=247.36 Aligned_cols=280 Identities=18% Similarity=0.242 Sum_probs=209.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 39 ~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
+..+.++.++|.+.++++|+++++.+. + ..+||.||.+.++++|..|.+.|+++|++|+++++|+++++++
T Consensus 19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~ 89 (557)
T PRK07059 19 ASQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVA 89 (557)
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence 355678999999999999999999875 3 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchh-hHH-------
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ-KKE------- 190 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~------- 190 (341)
+|||+++|++++|+++.++.+++.+++++++++++|+++.....+...... ...+.++......... ...
T Consensus 90 ~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (557)
T PRK07059 90 IAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVR 167 (557)
T ss_pred HHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEecccccccccccccccccc
Confidence 999999999999999999999999999999999999988765544333221 1222332221100000 000
Q ss_pred -----hhh-hCccceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhc-ccc
Q 019388 191 -----AEE-LGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT-GKV 262 (341)
Q Consensus 191 -----~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~-~~~ 262 (341)
... .......+++.+... ..........++++++++|||||||.||+|+++|.+++.++......+... ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~ 247 (557)
T PRK07059 168 RVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK 247 (557)
T ss_pred cccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhccccccc
Confidence 000 001233455554433 112223445678999999999999999999999999987765543322110 000
Q ss_pred -CCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 263 -CSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 263 -~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
-..++.+++.+|++|.+++.. .+.++..|++.++.+. ++..+++.++++++|.+.++|+++..+++.
T Consensus 248 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~ 318 (557)
T PRK07059 248 PRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNN 318 (557)
T ss_pred CCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcC
Confidence 112457888999999998765 6778888888777753 889999999999999999999999998764
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-31 Score=254.27 Aligned_cols=261 Identities=18% Similarity=0.220 Sum_probs=203.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC
Q 019388 33 DGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112 (341)
Q Consensus 33 ~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~ 112 (341)
..+|.+.....++.++|...+.++|+..++ . ..+..++.+||.||++++.++|.+|.++|+++|++|+++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~ 84 (579)
T PRK09192 11 SSLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD 84 (579)
T ss_pred ccccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 346666677789999999999888765543 2 2223457899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCeEEeecCCCC-------hhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCc
Q 019388 113 PEWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185 (341)
Q Consensus 113 ~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 185 (341)
+++++++|||+++|++++|+++... .+++..+++.++++++++++.....+...... ...+.
T Consensus 85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~----~~~~~------- 153 (579)
T PRK09192 85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG----NPLLH------- 153 (579)
T ss_pred hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc----ccccc-------
Confidence 9999999999999999999976443 68999999999999999998765554432211 11111
Q ss_pred hhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhh-hhhhccccCC
Q 019388 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCS 264 (341)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~-~~~~~~~~~~ 264 (341)
...++.+...............+++++++|||||||.||||+++|++++.++..... .+ ++.
T Consensus 154 ------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~ 216 (579)
T PRK09192 154 ------------VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KVR 216 (579)
T ss_pred ------------eeehhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cCC
Confidence 112222222221112223456789999999999999999999999999998887665 55 788
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 265 ~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
.+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.+.++++|+++..|.++..+.
T Consensus 217 ~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~ 285 (579)
T PRK09192 217 PGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCA 285 (579)
T ss_pred CCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHH
Confidence 9999999999999999986 7778899999987652 6889999999999998776655555544
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-31 Score=300.10 Aligned_cols=250 Identities=19% Similarity=0.220 Sum_probs=212.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..+++++|.+.++++|+++|+.+. + .++||+||.++++++|+.|.+.|+++|++|+++++|++++++++||
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la 580 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA 580 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 468999999999999999999865 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.++++++++++++++......+.. .....++.++....
T Consensus 581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~---------------- 638 (5163)
T PRK12316 581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AAGVQVLDLDRPAA---------------- 638 (5163)
T ss_pred HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------ccCceEEEecCcch----------------
Confidence 99999999999999999999999999999999998865432211 11122333332110
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
.........+.....++++++++|||||||.||||+++|+++.+++......+ +++.+|++++..|++|++++
T Consensus 639 --~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~~ 711 (5163)
T PRK12316 639 --WLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVSV 711 (5163)
T ss_pred --hhccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHHH
Confidence 11111112223345678999999999999999999999999999999888877 88999999999999999999
Q ss_pred HHHHHHHhcCceEEEec----CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWR----GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..++.++..|+++++.+ +++..+++.|+++++|++.++|++++.|++.
T Consensus 712 ~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 763 (5163)
T PRK12316 712 WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQD 763 (5163)
T ss_pred HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhc
Confidence 88999999999999985 2899999999999999999999999999764
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=249.17 Aligned_cols=245 Identities=18% Similarity=0.255 Sum_probs=204.2
Q ss_pred CHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHH
Q 019388 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (341)
Q Consensus 44 tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 123 (341)
++.+.|.+.++.+|+++|+.+. + ..+||.||.+++.++|+.|.+.|+++|++|+++++|+.++++++|||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ----G-----QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 4678999999999999998754 3 579999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHH
Q 019388 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE 203 (341)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (341)
++|++++|+++.++.+++..+++..+++.++++.+....... . .++.++. .+.
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~-~~~~~~~------------------~~~ 124 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------T-QIITLSA------------------LEQ 124 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------C-ceEEchH------------------hhh
Confidence 999999999999999999999999999999998865432211 1 1222211 111
Q ss_pred HHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 019388 204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283 (341)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 283 (341)
...............++++++++|||||||.||+|.++|.++...+......+ +...+|++++.+|++|..++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~ 199 (502)
T TIGR01734 125 AETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVMD 199 (502)
T ss_pred hhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHHH
Confidence 11111111112234678899999999999999999999999999888877766 7888999999999999999988
Q ss_pred HHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 284 ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 284 ~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
++.++..|+++++.+. ++..+++.++++++|.+.++|.++..++..
T Consensus 200 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~ 249 (502)
T TIGR01734 200 LYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLD 249 (502)
T ss_pred HHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhc
Confidence 8999999999998863 789999999999999999999999877654
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-31 Score=298.23 Aligned_cols=255 Identities=18% Similarity=0.179 Sum_probs=213.6
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...+++++|.+.++++|+++|+... ++ .+||+||.+.++++|+.|.++|+++|++|+++++++.++++++|
T Consensus 3718 ~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691 3718 LEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred cccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3469999999999999999999976 43 69999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccC-CcccEEEEeccCCchhhHHhhhhCccce
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|++++|++++||++.++.+++.++++++++++++++............... .....++..+..
T Consensus 3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 3852 (4334)
T PRK05691 3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV---------------- 3852 (4334)
T ss_pred HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc----------------
Confidence 999999999999999999999999999999999999876543322211110 011112221211
Q ss_pred eHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 019388 200 SWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 200 ~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
.... ....+.....+++.|+++|||||||+||||+++|+++.+.+......+ +++++|+++...|++|+
T Consensus 3853 -----~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd 3922 (4334)
T PRK05691 3853 -----QAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFD 3922 (4334)
T ss_pred -----ccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchh
Confidence 0001 111122345678999999999999999999999999999999887777 89999999999999999
Q ss_pred HHHHHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 279 YDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 279 ~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.++..++.+++.|+++++.+. ++..+++.++++++|++.++|++++.+++..
T Consensus 3923 ~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~ 3978 (4334)
T PRK05691 3923 ISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED 3978 (4334)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc
Confidence 999999999999999999864 7889999999999999999999999987653
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-31 Score=299.87 Aligned_cols=252 Identities=20% Similarity=0.249 Sum_probs=211.9
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...+++++|.+.++++|+++|+.+. + ..+||+||.++++++|..|.++|+++|++|+++++|+.++++++|
T Consensus 2001 ~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~l 2071 (5163)
T PRK12316 2001 RGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALL 2071 (5163)
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3458999999999999999999875 3 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.++++++++++++++.+....+... ... ..+.++..
T Consensus 2072 Ail~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~-~~~~~~~~----------------- 2128 (5163)
T PRK12316 2072 AVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGV-ARLPLDRD----------------- 2128 (5163)
T ss_pred HHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----ccc-ceEeccch-----------------
Confidence 9999999999999999999999999999999999988654332110 111 11222110
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
... .......+.....++++++++|||||||+||||+++|+++.+.+......+ +++.+|+++...|++|+.+
T Consensus 2129 -~~~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 2201 (5163)
T PRK12316 2129 -AEW-ADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDGA 2201 (5163)
T ss_pred -hhh-hccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHHH
Confidence 000 011111223345789999999999999999999999999999999887777 8899999999999999999
Q ss_pred HHHHHHHHhcCceEEEecC---CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|.+...
T Consensus 2202 ~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 2255 (5163)
T PRK12316 2202 HEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAE 2255 (5163)
T ss_pred HHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhh
Confidence 8889999999999987653 78999999999999999999999999987543
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-31 Score=251.60 Aligned_cols=242 Identities=14% Similarity=0.139 Sum_probs=187.7
Q ss_pred HHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHh
Q 019388 45 PWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124 (341)
Q Consensus 45 l~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~ 124 (341)
+.+.|.+.++++|+++++++. .++.++++||+||.++++++|+.|.++ ++|++|+++++|++++++++|||++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~-----~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDR-----ESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCC-----CCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 788999999999999999864 334578999999999999999999987 7999999999999999999999999
Q ss_pred cCCeEEeecCC--------CChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 125 QAITYVPLYDT--------LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 125 ~G~~~v~l~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
+|+++++ .+. ...+++..++++++++++|+++.....+..... . +.+.+.
T Consensus 77 ~G~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~~------------- 134 (525)
T PRK05851 77 AGAAVSI-LPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHDL------------- 134 (525)
T ss_pred cCCCCcC-CCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----cccccc-------------
Confidence 9998653 332 223455677899999999998765543322110 0 011100
Q ss_pred cceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCC-CCcEEEEecCh
Q 019388 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS-EEDTYFSFLPL 275 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~~pl 275 (341)
....... .........++++++++|||||||.||||++||+++.+++......+ ++. .+|++++.+|+
T Consensus 135 -----~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~pl 203 (525)
T PRK05851 135 -----ATAAHTN-RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWLPL 203 (525)
T ss_pred -----ccccccc-ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcCCC
Confidence 0000000 00111234678999999999999999999999999999998877776 777 89999999999
Q ss_pred HHHHHHHHHHHHHhcCceEEEec---C--CHHHHHHHhhhhcCcEEeccchHHHHH
Q 019388 276 AHIYDQIIETHCIHKGCSIGFWR---G--DVRYLMEDIQELKPTMFSGVPRVYDRI 326 (341)
Q Consensus 276 ~h~~g~~~~l~~l~~G~~~v~~~---~--~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (341)
+|.+|+..++.+++.|+++++.+ + ++..+++.++++++|.+..+|.++..+
T Consensus 204 ~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l 259 (525)
T PRK05851 204 YHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLI 259 (525)
T ss_pred ccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHH
Confidence 99999988889999999999976 2 577899999999999875544444444
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-30 Score=247.72 Aligned_cols=247 Identities=20% Similarity=0.235 Sum_probs=198.7
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.+.|.+.++.+|+++++.+. + ..+||.||.++++++|++|.+.|+++|++|+++++|++++++++|
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999999764 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.+++++++++.+++++...+.+.... ..++.++....
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~--------------- 161 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA--------------- 161 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence 99999999999999999999999999999999999987655433211 12222221100
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHH--HhhhhhhhhhccccCCCCcEEEEecChHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE--VLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~--~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
.....+ ..+...++.++++|||||||.||+|+++|...... .......+ ++..+|++++.+|++|.
T Consensus 162 --~~~~~~-----~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~pl~h~ 229 (516)
T PRK13383 162 --GAEESG-----GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-----RLRTGSRISVAMPMFHG 229 (516)
T ss_pred --hhhcCC-----CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-----ccCCCCeEEEecCCcch
Confidence 000000 11123456789999999999999999999743211 11222223 67889999999999999
Q ss_pred HHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 279 ~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+|+..++.++..|+++++.+. +++.+++.++++++|.+.++|+++..|.+..
T Consensus 230 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 282 (516)
T PRK13383 230 LGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELP 282 (516)
T ss_pred hhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcc
Confidence 999888888999999988765 9999999999999999999999999998654
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=246.26 Aligned_cols=277 Identities=19% Similarity=0.257 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCChHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
+.++.++|.+.+.++|+++++... + +.+||.||.++++++|+.|.+. |+++||+|+++++|++++++++|
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l 93 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999998753 3 5799999999999999999985 99999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEec--cCCchhhHH--------
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA--NVSSSQKKE-------- 190 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~-------- 190 (341)
||+++|++++|+++.++.+++.+++++++++++++++............ .....++... +........
T Consensus 94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK12492 94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK 171 (562)
T ss_pred HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence 9999999999999999999999999999999999987654433322211 1111111110 000000000
Q ss_pred -----hhhhCccceeHHHHHHcCC-CCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcc----
Q 019388 191 -----AEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG---- 260 (341)
Q Consensus 191 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~---- 260 (341)
..........|++...... ..........+++++++|||||||.||||+++|+++..++......+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK12492 172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ 251 (562)
T ss_pred ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence 0000012245555554331 111223456789999999999999999999999999888776655431100
Q ss_pred ccCCC-CcEEEEecChHHHHHHHH-HHHHHhcCceEEEec--CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 261 KVCSE-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 261 ~~~~~-~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..... +++++..+|++|.+|+.. ++..+..|+.+++.. .++..+++.|+++++|++.++|+++..|++.
T Consensus 252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 324 (562)
T PRK12492 252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDH 324 (562)
T ss_pred ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhC
Confidence 00222 357899999999999876 666788888777664 3889999999999999999999999998764
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=244.74 Aligned_cols=274 Identities=21% Similarity=0.350 Sum_probs=202.3
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
..+++.+++.+.+.++|++.++.+. + +.+||+||.+.+.++|+.|.+.|+++|++|+++++|+.++++++|
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4468999999999999999999864 3 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCC--c--hhh--HHhhh-
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS--S--SQK--KEAEE- 193 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~--~~~~~- 193 (341)
||+++|++++|+++.++.+++..+++.++++++++++............ .....++...... . ... ...+.
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK 170 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence 9999999999999999999999999999999999998655443222111 1122222211000 0 000 00000
Q ss_pred ---------hCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCC
Q 019388 194 ---------LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 264 (341)
Q Consensus 194 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~ 264 (341)
.......|+.+...............+++++++|||||||.||+|.++|+++..++......+ .+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~~ 246 (563)
T PRK06710 171 QSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNCK 246 (563)
T ss_pred cccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCCC
Confidence 000001122221111111111122357899999999999999999999999976554322211 1333
Q ss_pred -CCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 265 -EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 265 -~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.++++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++.
T Consensus 247 ~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 314 (563)
T PRK06710 247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNS 314 (563)
T ss_pred CCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcC
Confidence 4568899999999999876 6678899999999865 999999999999999999999999988753
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=268.63 Aligned_cols=267 Identities=17% Similarity=0.178 Sum_probs=206.9
Q ss_pred CCCCCHHHHHHHHHHhCCC-CcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
+...++.+.+.+.++++|+ +.++.+. ++ +++||+||+++++++|+.|.+ |+++||+|+++++|+++++++
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~ 698 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT 698 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence 4457788899999999875 5555432 22 579999999999999999975 999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHH--hhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL--SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
++||+++|++++|+++..+.+++.+++++++++++|++++..+... .... .......++.+++......
T Consensus 699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~-------- 769 (1140)
T PRK06814 699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIE-ALEFGIRIIYLEDVRAQIG-------- 769 (1140)
T ss_pred HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHH-HhccCceEEEehHhhccCC--------
Confidence 9999999999999999999999999999999999999876443211 1001 1122334555543211000
Q ss_pred cceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
....+.............+...++++++++|||||||.||||++||+++.+++......+ +++.+|++++.+|++
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~ 844 (1140)
T PRK06814 770 LADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVF 844 (1140)
T ss_pred hHHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchH
Confidence 000111111111111111235679999999999999999999999999999888877766 788999999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 277 HIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 277 h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
|.+|+.. ++.++..|+++++.+. +.+.+.+.++++++|++.++|++++.+.+.
T Consensus 845 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~ 900 (1140)
T PRK06814 845 HSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARY 900 (1140)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhh
Confidence 9999965 8889999999999874 677889999999999999999999988764
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=244.66 Aligned_cols=235 Identities=20% Similarity=0.277 Sum_probs=192.1
Q ss_pred HHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEE
Q 019388 51 DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV 130 (341)
Q Consensus 51 ~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v 130 (341)
..++.+||++++.+. .++ ..+||.||.+.+.++|.+|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 3 ~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v 75 (488)
T PRK09088 3 FHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYV 75 (488)
T ss_pred hhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 456789999998753 122 5899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcC--
Q 019388 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-- 208 (341)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 208 (341)
|+++..+.+++.+++++++++++|+++...... ... ..++.+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-----------~~~---------------------~~~~~~~~~~~~ 123 (488)
T PRK09088 76 PLNWRLSASELDALLQDAEPRLLLGDDAVAAGR-----------TDV---------------------EDLAAFIASADA 123 (488)
T ss_pred eeCccCCHHHHHHHHHhCCCCEEEEcchhhccc-----------ccc---------------------cchhhhhhhccc
Confidence 999999999999999999999999987543210 000 1111111111
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHH
Q 019388 209 TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHC 287 (341)
Q Consensus 209 ~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~ 287 (341)
...........+++++++|||||||.||+|.++|+++...+......+ .+..+|++++.+|++|.+|+.. ++.+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~~ 198 (488)
T PRK09088 124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRPV 198 (488)
T ss_pred cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHHH
Confidence 111112234568899999999999999999999999998887766655 6778999999999999999987 7778
Q ss_pred HhcCceEEEecC-CHHHHHHHhh--hhcCcEEeccchHHHHHHHH
Q 019388 288 IHKGCSIGFWRG-DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 288 l~~G~~~v~~~~-~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..|+++++.+. ++..++..+. ++++|+++++|++++.+.++
T Consensus 199 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~ 243 (488)
T PRK09088 199 LAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQ 243 (488)
T ss_pred HhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhC
Confidence 899999998775 8888888886 58999999999999988754
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=249.53 Aligned_cols=257 Identities=18% Similarity=0.249 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHhCCCCcceeeeeccCC---CCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 44 SPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 44 tl~~~l~~~~~~~p~~~al~~~~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
++.++|.+.+..+|+++|+.+. +. ..+..+++||+||.+++.++|++|.++| .+|++|+++++|++++++++|
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l 77 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL 77 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence 6789999999999999999865 21 1223478999999999999999999999 689999999999999999999
Q ss_pred HHHhcCCeEEeecC---CCChhHHHHHhhcCceeEEEEcCCChhhHHhhCccc-CCcccEEEEeccCCchhhHHhhhhCc
Q 019388 121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 121 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
||+++|++++|+++ ..+.+++.++++++++++++++++....+....... ......++.++...
T Consensus 78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 145 (578)
T PRK05850 78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLD------------ 145 (578)
T ss_pred HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccc------------
Confidence 99999999999997 457899999999999999999987665543321110 00111222222100
Q ss_pred cceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhh-ccccCCCCcEEEEecCh
Q 019388 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV-TGKVCSEEDTYFSFLPL 275 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~-~~~~~~~~d~~l~~~pl 275 (341)
+. ............+++++++|||||||.||||+++|++++.++......+.. .......++++++.+|+
T Consensus 146 -------~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl 216 (578)
T PRK05850 146 -------LD--SPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPF 216 (578)
T ss_pred -------cc--cCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCC
Confidence 00 000011223456899999999999999999999999999887765443211 00113567899999999
Q ss_pred HHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHH
Q 019388 276 AHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRI 326 (341)
Q Consensus 276 ~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (341)
+|.+|+.. ++.+++.|+++++.+. ++..+++.+.+++++.. .+|.++..+
T Consensus 217 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~ 272 (578)
T PRK05850 217 YHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFEL 272 (578)
T ss_pred CCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHH
Confidence 99999986 8889999999999862 68999999999999855 566654433
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=292.88 Aligned_cols=249 Identities=18% Similarity=0.244 Sum_probs=209.7
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...+++++|.+.++++|+++|+.+. + ..+||+||.++++++|+.|.++|+++|++|+++++++.++++++|
T Consensus 1129 ~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691 1129 AQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3468999999999999999999875 3 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
|++++|++++|+++.++.+++.++++++++++++++......+... .. ...+.++...
T Consensus 1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~~~~---------------- 1257 (4334)
T PRK05691 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EG-VSAIALDSLH---------------- 1257 (4334)
T ss_pred HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cC-ceEEeecccc----------------
Confidence 9999999999999999999999999999999999998654332110 01 1112222110
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
.. ......+.....++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++..|++|..+
T Consensus 1258 ~~----~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~s 1328 (4334)
T PRK05691 1258 LD----SWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDVS 1328 (4334)
T ss_pred cc----ccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence 00 00011122334678999999999999999999999999999988877777 8899999999999999999
Q ss_pred HHHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|.+.
T Consensus 1329 ~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~ 1381 (4334)
T PRK05691 1329 VWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDE 1381 (4334)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhC
Confidence 9889999999999999752 889999999999999999999999998764
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=242.23 Aligned_cols=276 Identities=19% Similarity=0.278 Sum_probs=207.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
..++.++|.+.++++|+++|+++. + +.+||+||.+++.++|+.|. +.|+++|++|+++++|++++++++|
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999998764 3 57999999999999999996 6899999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCC--c-hhhH--------
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS--S-SQKK-------- 189 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~-------- 189 (341)
||+++|++++|++|.++.+++.+++++++++++++++.....+....... ....++.++... . ....
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY 172 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence 99999999999999999999999999999999999987665443332211 223333322100 0 0000
Q ss_pred ---Hhhhh-CccceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCC
Q 019388 190 ---EAEEL-GVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 264 (341)
Q Consensus 190 ---~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~ 264 (341)
..... ......+++..... ....+......+++++++|||||||.||+|.++|.++..++......+.... .+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~ 251 (560)
T PRK08751 173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE 251 (560)
T ss_pred hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence 00000 00122344443332 1122233456789999999999999999999999999888776555431110 133
Q ss_pred C-CcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 265 E-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 265 ~-~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
. ++++++.+|++|.+|+.. .+..+..|+++++... ++..+++.|+++++|++.++|.++..+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 320 (560)
T PRK08751 252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNT 320 (560)
T ss_pred CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcC
Confidence 3 357888999999999875 5667777877776543 889999999999999999999999998763
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=241.22 Aligned_cols=246 Identities=18% Similarity=0.221 Sum_probs=203.8
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.++|.+.+..+|+++++... + .++||.||.+.+.++|..|.++|+++|++|+++.+|+.++++++|||
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~ 72 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA 72 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 46889999999999999998764 3 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
++.|++++|+++..+.+++..+++.+++++++++....... ... ..+..+ .+.
T Consensus 73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~------------------~~~ 125 (503)
T PRK04813 73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PVITLD------------------ELK 125 (503)
T ss_pred HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cEEehH------------------Hhh
Confidence 99999999999999999999999999999999988651100 011 111111 011
Q ss_pred HHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 019388 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282 (341)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 282 (341)
.................+++++++|||||||.||+|.++|+++...+......+ ++..+|+++...|++|..++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~ 200 (503)
T PRK04813 126 DIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFDLSVM 200 (503)
T ss_pred hhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchhHhHH
Confidence 111111111112344678899999999999999999999999999888777666 788899999999999999988
Q ss_pred HHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 283 IETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 283 ~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.++.++..|+++++.+. ++..+++.++++++|++..+|++++.++..
T Consensus 201 ~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~ 251 (503)
T PRK04813 201 DLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLD 251 (503)
T ss_pred HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHh
Confidence 88899999999998864 789999999999999999999999887654
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=241.12 Aligned_cols=257 Identities=18% Similarity=0.232 Sum_probs=200.6
Q ss_pred HHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCe
Q 019388 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128 (341)
Q Consensus 49 l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 128 (341)
....++++|+++++.+. ++. ..+||.||.+.+.++|+.|.+.|+++|++|+++++|++++++++|||++.|++
T Consensus 3 ~~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~ 75 (511)
T PRK13391 3 PGIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLY 75 (511)
T ss_pred hhhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccE
Confidence 34678889999999864 332 57999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcC
Q 019388 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG 208 (341)
Q Consensus 129 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (341)
++++++.++.+++.++++.++++.++++......+....... ......+.++..... .....+++.....
T Consensus 76 ~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 145 (511)
T PRK13391 76 YTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVLDGDGEL---------EGFVGYAEAVAGL 145 (511)
T ss_pred EeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcC-CCceEEEEecCCCCC---------cccccHHHHhcCC
Confidence 999999999999999999999999999987765544333222 333344444422110 0122344333211
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCccceee--ecHHHHHHH---hhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 019388 209 TLDCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEV---LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283 (341)
Q Consensus 209 ~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~--th~~l~~~~---~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 283 (341)
. .......++.++++|||||||.||||.+ +|.++.... ......+ ++..++++++.+|++|.+++..
T Consensus 146 ~---~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~ 217 (511)
T PRK13391 146 P---ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA 217 (511)
T ss_pred C---CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence 1 1112234567899999999999999995 566654332 2233333 6778899999999999999988
Q ss_pred HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 284 ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 284 ~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++..
T Consensus 218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 265 (511)
T PRK13391 218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLP 265 (511)
T ss_pred HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCc
Confidence 8889999999999876 9999999999999999999999999887643
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=237.16 Aligned_cols=275 Identities=16% Similarity=0.243 Sum_probs=204.7
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
..++.++|...++++|+++|+... + ..+||.||.++++++|.+|. +.|+++|++|+++++|+.++++++|
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 568999999999999999999753 3 57999999999999999998 4899999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchh--hH-----Hh--
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ--KK-----EA-- 191 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~-----~~-- 191 (341)
||+++|++++|+++.++.+++.++++++++++++++.+..+.+...... .....++......... .. ..
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY 170 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence 9999999999999999999999999999999999988655444332221 1222222211110000 00 00
Q ss_pred -----hh-hCccceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCC
Q 019388 192 -----EE-LGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS 264 (341)
Q Consensus 192 -----~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~ 264 (341)
.. .......+.+....+ ...........+++++++|||||||.||+|.++|.++..++......+. .....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~~~ 248 (560)
T PRK08974 171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG--PLLHP 248 (560)
T ss_pred cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhc--cccCC
Confidence 00 000112222222222 1111123346789999999999999999999999999887765433320 00123
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 265 ~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.++.++..+|++|.+|+.. .+..+..|+++++... ++..+++.++++++|.+.++|++++.|++.
T Consensus 249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 316 (560)
T PRK08974 249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNN 316 (560)
T ss_pred CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhC
Confidence 4678899999999999876 6777889998777643 888999999999999999999999998864
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=254.98 Aligned_cols=263 Identities=15% Similarity=0.158 Sum_probs=197.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++||++|+.+. + +.+||+||.++++++|+.|.++|+++|++|+++++|++++++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~----~-----~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD----G-----RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45578999999999999999999864 3 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
+||+++|++++|+++. +++.++++++++++||++.+....+... ...+++++.......... ......
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~~~--~~~~~~ 582 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLDLP--DDADVI 582 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccccCC--cchhhh
Confidence 9999999999999984 6899999999999999987766544221 234555543211000000 000011
Q ss_pred eHHHHHHcCCC---CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 200 SWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 200 ~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
.+++....... ........++++++|+|| ||||.||++.++|.+...........+ ++..+|++++.+|++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~ 656 (994)
T PRK07868 583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH 656 (994)
T ss_pred hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence 11111110000 001112236889999998 577778888888877665555444444 788899999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 277 HIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 277 h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
|.+|+.. ++..+..|+++++.+. +++.+++.|+++++|+++++|++++.|++.
T Consensus 657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~ 711 (994)
T PRK07868 657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDD 711 (994)
T ss_pred HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhC
Confidence 9999987 4455666666666654 999999999999999999999999999874
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=237.31 Aligned_cols=234 Identities=22% Similarity=0.213 Sum_probs=192.5
Q ss_pred CHHHHH-HHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 44 SPWQFF-CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 44 tl~~~l-~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
++-+++ ...++++|+++|+.+. + +.+||.||.+.++++|+.|.+.|+++|++|+++++|+++++++++||
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~ 73 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLAL 73 (458)
T ss_pred hhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 344444 5558899999999753 3 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
+++|++++|+++..+.+++..+++++++++++++++... +. .+... ...
T Consensus 74 ~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--------~~~~~----------------------~~~ 122 (458)
T PRK09029 74 LQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FS--------ALTSL----------------------HLQ 122 (458)
T ss_pred HHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hh--------hcccc----------------------ccc
Confidence 999999999999999999999999999999999876432 10 00000 000
Q ss_pred HHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 019388 203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282 (341)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 282 (341)
...........++++++++|||||||.||||.+||++++..+......+ +...+|+++..+|++|.+|+.
T Consensus 123 -----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g~~ 192 (458)
T PRK09029 123 -----LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSGQG 192 (458)
T ss_pred -----cccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhhhH
Confidence 0001112234678899999999999999999999999999998877766 788899999999999999998
Q ss_pred HHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 283 IETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 283 ~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
.++.++..|+++++.+. ..+++.+ .++|.+.++|+++..+++...
T Consensus 193 ~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~ 237 (458)
T PRK09029 193 IVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRS 237 (458)
T ss_pred HHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhccc
Confidence 78888999999998763 5667777 479999999999998886543
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=240.47 Aligned_cols=249 Identities=18% Similarity=0.158 Sum_probs=199.3
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.+.|...+...|+..++... ++. +.+||.||+++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~ 74 (545)
T PRK07768 2 SRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL 74 (545)
T ss_pred chHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 46888888999999999988665 432 78999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHH-------HHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhC
Q 019388 123 NSQAITYVPLYDTLGANAV-------EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 195 (341)
+++|++++++++..+.+++ ..+++.++++.+++++........... ...
T Consensus 75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~-------------------- 130 (545)
T PRK07768 75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE----KGI-------------------- 130 (545)
T ss_pred HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc----cCC--------------------
Confidence 9999999999988776544 456788899999998765433221110 000
Q ss_pred ccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCC-cEEEEecC
Q 019388 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE-DTYFSFLP 274 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~-d~~l~~~p 274 (341)
....++++..... .......++++++++|||||||.||+|+++|+++..++......+ ++..+ |++++.+|
T Consensus 131 -~~~~~~~l~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~p 202 (545)
T PRK07768 131 -RVLTVADLLAADP--IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSWLP 202 (545)
T ss_pred -ceeehhhhcccCC--CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEeCC
Confidence 1223444433221 122345678999999999999999999999999999888766665 66665 89999999
Q ss_pred hHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 275 LAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 275 l~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++..+|.++..+.+.+
T Consensus 203 ~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 264 (545)
T PRK07768 203 LFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRL 264 (545)
T ss_pred CccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHH
Confidence 999999986 6678999999988753 6788899999999999988888887776655
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=236.79 Aligned_cols=248 Identities=17% Similarity=0.220 Sum_probs=187.8
Q ss_pred HHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEE
Q 019388 51 DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV 130 (341)
Q Consensus 51 ~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v 130 (341)
..++++|+++|+.+. ++. ..+||+||.+.++++|+.|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 456789999999764 322 6899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCCC
Q 019388 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL 210 (341)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (341)
|+++.++.+++.+++++++++++++++......... . ......+.++.... ....++.......
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~- 141 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKV-G---ADLPLRLSFGGEID-----------GFGSFEAALAGAG- 141 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHh-h---hccceEEEecCccc-----------ccccHHHHhcccC-
Confidence 999999999999999999999999987543322111 1 11111222221110 0123333322110
Q ss_pred CCCCCCCCCCCeEEEEeCCCCCCCccceee--ecHHHHHHHh----hhhhhhhhccccCCCCcEEEEecChHHHHHHHHH
Q 019388 211 DCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEVL----SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284 (341)
Q Consensus 211 ~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~--th~~l~~~~~----~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 284 (341)
......++.++++|||||||.||||++ +|.++..... .....+ ++..+|++++.+|++|.+++...
T Consensus 142 ---~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~~ 213 (501)
T PRK13390 142 ---PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRWC 213 (501)
T ss_pred ---CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHHH
Confidence 011122357999999999999999995 5555544321 112223 67889999999999999998765
Q ss_pred HHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 285 l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..+..|+++++.+. ++..+++.|+++++|++.++|+++..+++.
T Consensus 214 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 259 (501)
T PRK13390 214 SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKL 259 (501)
T ss_pred HHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhc
Confidence 556678999998875 999999999999999999999999988753
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=231.85 Aligned_cols=200 Identities=15% Similarity=0.155 Sum_probs=177.9
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEE
Q 019388 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (341)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 155 (341)
+++||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..++++++++.+++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 58999999999999999985 68999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCc
Q 019388 156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP 235 (341)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~p 235 (341)
++.... .. ......++++++++|||||||.|
T Consensus 86 ~~~~~~------------------~~-------------------------------~~~~~~~~~~~~i~~TSGtTG~P 116 (414)
T PRK08308 86 GESDFT------------------KL-------------------------------EAVNYLAEEPSLLQYSSGTTGEP 116 (414)
T ss_pred cCcccc------------------cc-------------------------------cCCCCCCCCceEEEECCCCCCCC
Confidence 763110 00 00123467899999999999999
Q ss_pred cceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcC
Q 019388 236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKP 313 (341)
Q Consensus 236 K~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~ 313 (341)
|+|++||+++..++..+...+ ++..+|+++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++
T Consensus 117 Kgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~ 191 (414)
T PRK08308 117 KLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQ 191 (414)
T ss_pred cEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCC
Confidence 999999999999888877776 7788899999999999999876 8889999999999876 99999999999999
Q ss_pred cEEeccchHHHHHHHHH
Q 019388 314 TMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 314 t~~~~~P~~~~~l~~~~ 330 (341)
|+++++|+++..+.+..
T Consensus 192 t~~~~~P~~~~~l~~~~ 208 (414)
T PRK08308 192 HILYAVPLMLHILGRLL 208 (414)
T ss_pred eEEEcCHHHHHHHHhcC
Confidence 99999999999987653
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=209.39 Aligned_cols=222 Identities=13% Similarity=0.066 Sum_probs=165.0
Q ss_pred HHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCChHHHHHHHHHHhcCC
Q 019388 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAI 127 (341)
Q Consensus 49 l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~ 127 (341)
|...++++|+++++++. ++..+...++||+|+.++++++|+.|.+ +|+++||+|+++++|+++++++++|++++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46678889999999864 3322233679999999999999999998 7999999999999999999999999999999
Q ss_pred eEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHc
Q 019388 128 TYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL 207 (341)
Q Consensus 128 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (341)
+++|++ .+++++++++.+....+. . . +.++.+.......... .....+...|...+..
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 136 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAA-G-----S--GEVVALSLDPLGRRVA-GELPPGVIDFAPEVRV 136 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhcc-c-----C--CceEEEeccccccCCC-CCCCCcccchhhhhhc
Confidence 999995 689999999987765532 0 1 2233332100000000 0001123456665553
Q ss_pred CCCCCCCC-CCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HH
Q 019388 208 GTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET 285 (341)
Q Consensus 208 ~~~~~~~~-~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l 285 (341)
........ ...++|+++++||||+ +|++++.+. ..+ +++++|+++ .+|++|.+|+.. ++
T Consensus 137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~ 197 (227)
T TIGR03089 137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL 197 (227)
T ss_pred cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence 31121112 4566899999999985 666666654 333 788999999 999999999986 88
Q ss_pred HHHhcCceEEEecC-CHHHHHHHhhhhcCc
Q 019388 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPT 314 (341)
Q Consensus 286 ~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t 314 (341)
.++..|+++++++. ++..+++.|+++|||
T Consensus 198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 198 APLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 99999999999875 999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=230.15 Aligned_cols=214 Identities=23% Similarity=0.294 Sum_probs=180.8
Q ss_pred eHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCC
Q 019388 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (341)
Q Consensus 79 Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (341)
||+||.+.++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccc
Q 019388 159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKG 237 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~ 237 (341)
...... . ...+..+.... ...........+++++++|||||||.||+
T Consensus 81 ~~~~~~-----------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 128 (436)
T TIGR01923 81 LEEKDF-----------Q---------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128 (436)
T ss_pred ccccce-----------e---------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence 321100 0 00111111111 11111234456889999999999999999
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHhhhhcCcEEe
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFS 317 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~ 317 (341)
|+++|+++...+......+ ++.++|++++.+|++|..|+..++.++..|+++++.+. ...+++.|+++++|++.
T Consensus 129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK-FNQLLEMIANERVTHIS 202 (436)
T ss_pred EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecch-HHHHHHHHHHhCCeEEE
Confidence 9999999999999887777 88899999999999999999888899999999999864 24899999999999999
Q ss_pred ccchHHHHHHHHH
Q 019388 318 GVPRVYDRIYTGT 330 (341)
Q Consensus 318 ~~P~~~~~l~~~~ 330 (341)
++|+++..+++..
T Consensus 203 ~~P~~l~~l~~~~ 215 (436)
T TIGR01923 203 LVPTQLNRLLDEG 215 (436)
T ss_pred eHHHHHHHHHhCc
Confidence 9999999988753
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=231.08 Aligned_cols=222 Identities=20% Similarity=0.238 Sum_probs=184.5
Q ss_pred HHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEee
Q 019388 53 AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132 (341)
Q Consensus 53 ~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 132 (341)
..+.++++++.+. + +++||+||.++++++|..|. ++++|+++++|+++++++++||+++|++++|+
T Consensus 10 ~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l 75 (471)
T PRK07787 10 AAAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV 75 (471)
T ss_pred hcccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence 3456788888764 3 68999999999999999995 56899999999999999999999999999999
Q ss_pred cCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCCCCC
Q 019388 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC 212 (341)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (341)
++..+.+++..+++++++++++++.+... ..+... .+... ... ..
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~-~~~~~--------------~~~----------~~ 120 (471)
T PRK07787 76 PPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHV-PVRLH--------------ARS----------WH 120 (471)
T ss_pred CCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccce-eeecc--------------ccc----------cc
Confidence 99999999999999999999999874110 011110 00000 000 01
Q ss_pred CCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcC
Q 019388 213 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKG 291 (341)
Q Consensus 213 ~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G 291 (341)
......++++++++|||||||.||+|+++|+++..++..+...+ ++..+|++++.+|++|.+|+.. ++.++..|
T Consensus 121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 195 (471)
T PRK07787 121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIG 195 (471)
T ss_pred cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhcC
Confidence 11224578999999999999999999999999999988877766 7888999999999999999987 88899999
Q ss_pred ceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 292 CSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 292 ~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+++++.+. ++..+++.|+ +++|++.++|+++..|++.
T Consensus 196 ~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~ 233 (471)
T PRK07787 196 NRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAAD 233 (471)
T ss_pred CEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhC
Confidence 99999875 9999999999 9999999999999998863
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-28 Score=229.30 Aligned_cols=240 Identities=20% Similarity=0.260 Sum_probs=188.0
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEE
Q 019388 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (341)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 155 (341)
..+||+||.+.+.+++++|.++|+++|++|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCc
Q 019388 156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP 235 (341)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~p 235 (341)
+......+.............++..+.... ....|++...... .......++.++++|||||||.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~P 155 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPVP-----------GFRSYEEALAAQP---DTPIADETAGADMLYSSGTTGRP 155 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCCC-----------ccccHHHHHhcCC---CCCCCCCCcceEEEECCCCCCCC
Confidence 987766554433222113445554432111 1334554433221 11223567789999999999999
Q ss_pred cceeeecHHHHHHHh--hhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhc
Q 019388 236 KGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELK 312 (341)
Q Consensus 236 K~V~~th~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~ 312 (341)
|+|+++|.++..... ...... ........++++++..|++|.+++...+.++..|+++++.+. ++..+++.+++++
T Consensus 156 K~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 234 (502)
T PRK08276 156 KGIKRPLPGLDPDEAPGMMLALL-GFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR 234 (502)
T ss_pred ceEEEccCCcchhhhhHHhhhhh-hhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence 999999887654332 110100 001123467899999999999999887789999999999876 9999999999999
Q ss_pred CcEEeccchHHHHHHHHH
Q 019388 313 PTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 313 ~t~~~~~P~~~~~l~~~~ 330 (341)
+|++.++|+++..+++..
T Consensus 235 ~t~~~~~P~~~~~l~~~~ 252 (502)
T PRK08276 235 VTHSQLVPTMFVRMLKLP 252 (502)
T ss_pred CeEEEehHHHHHHHHhCc
Confidence 999999999999988653
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=229.72 Aligned_cols=202 Identities=13% Similarity=0.090 Sum_probs=167.9
Q ss_pred EeHHHHHHHHHHHHHHHHhCCC-CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEc
Q 019388 78 LTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 156 (341)
Q Consensus 78 ~Ty~el~~~~~~la~~L~~~g~-~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 156 (341)
|.|+||.++++++|++|.++|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 7899999999999999999988 579999999999999999999999999999999999999999999999999999987
Q ss_pred CCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCcc
Q 019388 157 ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPK 236 (341)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK 236 (341)
++..... .... . .......++++++++|||||||.||
T Consensus 100 ~~~~~~~----------------~~~~----------------~-----------~~~~~~~~~~~~~i~~TSGTTG~PK 136 (452)
T PRK07445 100 DQLKLSH----------------PPPL----------------P-----------SQGILPNLETGWIMIPTGGSSGQIR 136 (452)
T ss_pred Ccccccc----------------CCCC----------------C-----------ccccCCCCCCcEEEEeCCCCCCCCc
Confidence 7532100 0000 0 0001234688999999999999999
Q ss_pred ceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcE
Q 019388 237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315 (341)
Q Consensus 237 ~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~ 315 (341)
||++||+++..++......+ ++.+ ++.++.+|++|.+|+..++.++..|+++++.++ ..........++++|+
T Consensus 137 gV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~ 210 (452)
T PRK07445 137 FAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFF 210 (452)
T ss_pred EEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceE
Confidence 99999999998888776665 5544 467889999999999888899999999999874 3333334445789999
Q ss_pred EeccchHHHHHHH
Q 019388 316 FSGVPRVYDRIYT 328 (341)
Q Consensus 316 ~~~~P~~~~~l~~ 328 (341)
+.++|++++.+++
T Consensus 211 ~~~vP~~l~~l~~ 223 (452)
T PRK07445 211 LSLVPTQLQRLLQ 223 (452)
T ss_pred EEehHHHHHHHHh
Confidence 9999999999986
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=222.81 Aligned_cols=224 Identities=22% Similarity=0.300 Sum_probs=185.8
Q ss_pred eHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcC
Q 019388 79 TYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (341)
Q Consensus 79 Ty~el~~~~~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (341)
||.||.+.++++++.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++.++.+++..+++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCcc
Q 019388 158 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPK 236 (341)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK 236 (341)
.....+.... ...+.+... +....... ...........+++++++|||||||.||
T Consensus 81 ~~~~~~~~~~-------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK 136 (408)
T TIGR01733 81 ALASRLAGLV-------LPIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK 136 (408)
T ss_pred chhhhccccC-------CceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence 7655432211 112222111 00011111 0011111135789999999999999999
Q ss_pred ceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC----CHHHHHHHhhhhc
Q 019388 237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELK 312 (341)
Q Consensus 237 ~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~ 312 (341)
+|.+||+++...+..+...+ .+..+|++++..|++|.+++..++.++..|+++++.+. .+..+.+.+++++
T Consensus 137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
T TIGR01733 137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP 211 (408)
T ss_pred EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence 99999999999999887777 78889999999999999999889999999999999875 2688999999999
Q ss_pred CcEEeccchHHHHHHHHHH
Q 019388 313 PTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 313 ~t~~~~~P~~~~~l~~~~~ 331 (341)
+|.+.++|.+++.|++...
T Consensus 212 ~t~l~~~p~~~~~l~~~~~ 230 (408)
T TIGR01733 212 VTVLNLTPSLLALLAAALP 230 (408)
T ss_pred ceEEEeCHHHHHHHHHhhh
Confidence 9999999999999998754
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=225.82 Aligned_cols=242 Identities=18% Similarity=0.197 Sum_probs=185.8
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEE
Q 019388 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (341)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 155 (341)
+.+||.||.++++++|++|.++|+++|++|+++++|+++++++++||+++|++++++++..+.+++..+++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHhhCcccCCcccEEEEeccCCchh---hH--HhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCC
Q 019388 156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQ---KK--EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSG 230 (341)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 230 (341)
+......+..... ....++......... .. ...........++++.... ........+++++++||||
T Consensus 90 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSG 162 (509)
T PRK12406 90 HADLLHGLASALP----AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQ---EPYDGPPVPQPQSMIYTSG 162 (509)
T ss_pred ccchhhhhhhhhh----cccceeecccccccccccccccccccCCCCccCHHHHhccc---CccCCCCCCCceEEEECCC
Confidence 8876655433221 111122111110000 00 0000111234555554322 1122345689999999999
Q ss_pred CCCCccceeeecHHHHHH---HhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHH
Q 019388 231 TTGEPKGVVLTNQAIVAE---VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLME 306 (341)
Q Consensus 231 sTG~pK~V~~th~~l~~~---~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~ 306 (341)
|||.||+|+++|.+.... .......+ ++..+|++++.+|++|..+....+.++..|+++++.+. +++.+++
T Consensus 163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 237 (509)
T PRK12406 163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQ 237 (509)
T ss_pred CCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHH
Confidence 999999999977654333 33333344 77889999999999999988877778889999998876 9999999
Q ss_pred HhhhhcCcEEeccchHHHHHHHH
Q 019388 307 DIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 307 ~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.++++++|.+.++|+++..|++.
T Consensus 238 ~l~~~~~t~~~~~P~~~~~l~~~ 260 (509)
T PRK12406 238 LIERHRITHMHMVPTMFIRLLKL 260 (509)
T ss_pred HHHHcCCeEEEccHHHHHHHHhC
Confidence 99999999999999999998764
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=219.39 Aligned_cols=267 Identities=19% Similarity=0.227 Sum_probs=208.7
Q ss_pred HHHHHHHHh-CCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhc
Q 019388 47 QFFCDSAKR-IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQ 125 (341)
Q Consensus 47 ~~l~~~~~~-~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~ 125 (341)
..+++.... .++.+++++. +...+....+||.|+.+.+.++|..|..+|+++||+|++++|+.++.+++++||.++
T Consensus 68 n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~ 144 (626)
T KOG1175|consen 68 NCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARI 144 (626)
T ss_pred hhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhc
Confidence 344444333 4788888877 444444455999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhh---------HHh---hCcccCCcccEEEEeccCCchhhHHhhh
Q 019388 126 AITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS---------ILS---CLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (341)
Q Consensus 126 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 193 (341)
|++..++...++++++...++++++++||+.+..... +.+ ............+.+.....
T Consensus 145 Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------- 216 (626)
T KOG1175|consen 145 GAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNR-------- 216 (626)
T ss_pred CeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccc--------
Confidence 9999999999999999999999999999998843211 111 11111111112222222111
Q ss_pred hCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhh-hhhhhhhccccCCCCcEEEEe
Q 019388 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSF 272 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~ 272 (341)
...|+..+.......+....+.+++.+|+|||||||.||++.+++....-.+.. ....+ ++.++|++.+.
T Consensus 217 ----d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d~q~~dv~~~~ 287 (626)
T KOG1175|consen 217 ----DLFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----DLQPSDVLWCA 287 (626)
T ss_pred ----cccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----cCCCcceEEEe
Confidence 345666656554445577788999999999999999999999998776655554 33333 88999999999
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEecC---CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
.-+.|+.|.+. ++.+|++|+++++... ++..+++.+.++++|+++..|+.++.|.+..+..
T Consensus 288 ~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~ 352 (626)
T KOG1175|consen 288 SDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQED 352 (626)
T ss_pred cccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccc
Confidence 99999999998 6779999999999875 8899999999999999999999999887655443
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=213.50 Aligned_cols=210 Identities=17% Similarity=0.152 Sum_probs=154.7
Q ss_pred cCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh------hhHHhhCcccCCcccEEEEecc
Q 019388 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI------PSILSCLPRCCLYLKTIVSFAN 182 (341)
Q Consensus 109 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~i~~~~ 182 (341)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... +.+..... . .....++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~ 78 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVE-A-APAKAIVLPAA 78 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhh-c-ccceEEEEecc
Confidence 5899999999999999999999999999999999999999999999987531 11111111 1 11222222211
Q ss_pred CCchhhHHhhhhCccceeHHHHHHcCC-----C--CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhh
Q 019388 183 VSSSQKKEAEELGVSCFSWEEFLQLGT-----L--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM 255 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~ 255 (341)
..... . ........|+++..... . ........++++++|+|||||||.||||++||++++.++......
T Consensus 79 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 154 (499)
T PLN03051 79 GEPVA---V-PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH 154 (499)
T ss_pred CcccC---C-ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence 10000 0 00001234555542210 0 111112356899999999999999999999999998876655454
Q ss_pred hhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 256 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+ +++.+|++++.+|++|.+|+..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|++.
T Consensus 155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~ 225 (499)
T PLN03051 155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHT 225 (499)
T ss_pred c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhc
Confidence 4 77889999999999999998778889999999999863 788999999999999999999999998764
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=195.67 Aligned_cols=245 Identities=20% Similarity=0.247 Sum_probs=203.8
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++++.|.+.+.+.|++.++... + .++||+|+..+++++|..|.+.|+.+++.|+++.+.+.+++++++|
T Consensus 226 ~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ 296 (642)
T COG1020 226 RLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLA 296 (642)
T ss_pred cchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHH
Confidence 478999999999999999888764 2 5799999999999999999999999999999999889999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
+++.|+.++|+++.++.+++..++++++++.+++........... +. +.++... +
T Consensus 297 ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~----------------~ 351 (642)
T COG1020 297 VLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LALDDAL----------------S 351 (642)
T ss_pred HHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccccccc----------------c
Confidence 999999999999999999999999999999999994322211000 00 1111110 0
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
. .............++.++++|||||||+||||+.+|+++.+........+ .++.+|+++...++++....
T Consensus 352 ~----~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~~~ 422 (642)
T COG1020 352 E----IPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDASV 422 (642)
T ss_pred c----CCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccchhH
Confidence 0 00000012234568999999999999999999999999999777766666 88899999999999999888
Q ss_pred HHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..++.++..|+++++.+. ++..+.+.+.++++|++..+|.++..++..
T Consensus 423 ~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~ 474 (642)
T COG1020 423 FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLA 474 (642)
T ss_pred HHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence 889999999999999874 889999999999999999999999999876
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=153.08 Aligned_cols=270 Identities=11% Similarity=0.059 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCChHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.++.++|+..++++||.+|+... +..+..-.++||++|..++++++..|... -+++||.|+++.+++.||+++++|
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~ 846 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA 846 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence 68999999999999999999987 66666778999999999999999999865 579999999999999999999999
Q ss_pred HHhcCCeEEeecCCC------ChhHHHHHhhcCceeEEEEcCCChhhHHhhC---cccCCcccEEEEeccCCchhhHHhh
Q 019388 122 CNSQAITYVPLYDTL------GANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANVSSSQKKEAE 192 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 192 (341)
|+.+|.+++|+.|.- ....+.-+++..++..|+++......+...- .-.....+.++..++...
T Consensus 847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~------- 919 (1363)
T KOG3628|consen 847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE------- 919 (1363)
T ss_pred HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-------
Confidence 999999999998743 3466788899999999999986432221110 001122233333333221
Q ss_pred hhCccceeHHHHHHcC---CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEE
Q 019388 193 ELGVSCFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 269 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (341)
+|..-.... ....++...+.+.+|++-|.--++|.--++.++|..+++.+....+.. .+....-+
T Consensus 920 -------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl 987 (1363)
T KOG3628|consen 920 -------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPL 987 (1363)
T ss_pred -------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCce
Confidence 111111111 112233344667899999999999999999999999999999987766 66666667
Q ss_pred EEecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHhh
Q 019388 270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQC 334 (341)
Q Consensus 270 l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 334 (341)
+...+.+-..|+.. +|..++.|.+.++.+. ++..+++.|+++++.-.+.+=..++.+.+.+....
T Consensus 988 ~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~ 1058 (1363)
T KOG3628|consen 988 LGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSV 1058 (1363)
T ss_pred EEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccccc
Confidence 77777776777776 8889999988777753 89999999999999999988888888877665443
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=133.42 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=87.8
Q ss_pred CCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCC--CCcEEEEecChHHHHHHHH-HHHHHhcCceEEE
Q 019388 220 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS--EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGF 296 (341)
Q Consensus 220 ~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~ 296 (341)
+..++++|||||||.||||++||+++.+.+..+...+ ++. ..|++++.+|++|.+|+.. ++.++..|+++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~ 169 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ 169 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence 5578999999999999999999999999888777765 553 3468999999999999865 7888999999998
Q ss_pred ecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 297 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 297 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.+. ++..+++.++.+ |+++++|++++.|.+.
T Consensus 170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~ 201 (386)
T TIGR02372 170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADL 201 (386)
T ss_pred cCCCChHHHHHhhccC--CEEEECcHHHHHHHhh
Confidence 765 888888888754 8999999999999764
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-13 Score=121.27 Aligned_cols=106 Identities=24% Similarity=0.261 Sum_probs=88.1
Q ss_pred CCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEE
Q 019388 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 296 (341)
Q Consensus 217 ~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~ 296 (341)
..++++++++|||||||.||+|+++|+++...+......+ ...++++..+|++|.+|+..++.++..|+++++
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~ 104 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL-------GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVE 104 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc-------CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEe
Confidence 3468999999999999999999999999998887654433 345789999999999999888889999999887
Q ss_pred ec----CCHHHHHHHhhhhc--CcEEeccchHHHHHHHH
Q 019388 297 WR----GDVRYLMEDIQELK--PTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 297 ~~----~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~ 329 (341)
.. +++..+++.+++++ .++...+|..+..++.+
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~ 143 (358)
T PRK07824 105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDD 143 (358)
T ss_pred cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhC
Confidence 32 28999999999998 56667788888776653
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-13 Score=130.03 Aligned_cols=280 Identities=15% Similarity=0.093 Sum_probs=181.2
Q ss_pred eeccccCCCCCCCC------CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCC
Q 019388 26 YRCIYAKDGLLESP------AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV 99 (341)
Q Consensus 26 ~r~~~~~~~~~~~~------~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~ 99 (341)
+++.-..+.+|... .-..++.+.+.+.+...|...+..+.+. ....+....+||.+....++.+++.|...|.
T Consensus 13 ~~~~~~~d~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~ 91 (1032)
T KOG1178|consen 13 LITYRQEDSLPDETKQIGFEQFMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGS 91 (1032)
T ss_pred eeccccccccCChhhhhhhhhhhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhccc
Confidence 34444445555432 2345777789999999999988776643 3345566789999999999999999999999
Q ss_pred CCCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCC----hhHHHHHhhcC-ceeEEEEcCCChhhHHhhCcccCCcc
Q 019388 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG----ANAVEFIINHA-EVSIAFVQENKIPSILSCLPRCCLYL 174 (341)
Q Consensus 100 ~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~----~~~l~~~l~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~ 174 (341)
.+++.|++++..+.++++..++.++.|..+++++|.++ .+++..+.... ....-+...... ...
T Consensus 92 ~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i---~~~-------- 160 (1032)
T KOG1178|consen 92 LRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNI---IDI-------- 160 (1032)
T ss_pred ccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhh---HHH--------
Confidence 99999999999999999999999999999999999998 22111111000 000111111000 000
Q ss_pred cEEEEeccCCchhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhh
Q 019388 175 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254 (341)
Q Consensus 175 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~ 254 (341)
.+.+..... ... .....+..+... ...........++.+++.||||+||.||+|.-+|..+.+.......
T Consensus 161 ---~~~~~~~~~---sv~---~~~~~f~~~~~~-~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~ 230 (1032)
T KOG1178|consen 161 ---LLNSLFPKL---SVE---TIADSFQMVLHN-EDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFT 230 (1032)
T ss_pred ---Hhhcccccc---chh---hccchhhhhhcc-CCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccc
Confidence 000000000 000 000111111111 1122223445677999999999999999999999999998887666
Q ss_pred hhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 255 MFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 255 ~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.+ ..+..++.-..... ++..-...+.+++..|+.+..+.. .+..+.+.+++++++....+|++.+.++..
T Consensus 231 ~f-----~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~ 305 (1032)
T KOG1178|consen 231 TF-----PPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAI 305 (1032)
T ss_pred cC-----CcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhh
Confidence 55 66666664222222 233333335556666666665543 478999999999999999999998888755
Q ss_pred HHH
Q 019388 330 TIC 332 (341)
Q Consensus 330 ~~~ 332 (341)
...
T Consensus 306 ~~~ 308 (1032)
T KOG1178|consen 306 LTT 308 (1032)
T ss_pred cCc
Confidence 443
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=114.94 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=88.2
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH-HHHHHHhcCceEEE
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGF 296 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~l~~l~~G~~~v~ 296 (341)
..++++.+++||||||.||+|.++|.++..........+. ..++..+|++++..++.+..+.. ..+.....|++++.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~--~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIR--AAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHH--HcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 4567888999999999999999999999776554332211 12678899998877665433333 35667788999988
Q ss_pred ecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 297 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 297 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
++. +++.+++.|++++||+++++|+++..|++..++
T Consensus 151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~ 187 (422)
T TIGR02155 151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKR 187 (422)
T ss_pred cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHH
Confidence 765 889999999999999999999999999887654
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-10 Score=105.88 Aligned_cols=112 Identities=20% Similarity=0.095 Sum_probs=87.7
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEE
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGF 296 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~ 296 (341)
..++++.+.+||||||.||+|.+||.++...+......+.. .++..+|+++...|..+..|... .+.+...|++++.
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~ 161 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP 161 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence 45678899999999999999999999998776654443211 26788999999999887766554 4566788888764
Q ss_pred ecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 297 WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 297 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
.. .....++.|+++++|.+.++|+.+..|++.+++
T Consensus 162 ~~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~ 196 (445)
T TIGR03335 162 EG-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKA 196 (445)
T ss_pred CC-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHH
Confidence 33 445678999999999999999999888876654
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=97.58 Aligned_cols=257 Identities=15% Similarity=0.136 Sum_probs=181.1
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHH-HHHhCCCCCCCeEEEEcCC--ChHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGS-AMRSRGVNPGDRCGIYGSN--CPEWIIA 118 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~-~L~~~g~~~~~~V~i~~~n--~~~~~~~ 118 (341)
...+...++..-..++...|.++- | +.|....+||..+..++.++|+ .|.+-|+.++++|.++-.. ..++++.
T Consensus 93 ~~d~~avl~~~~nhs~~~ta~i~i---d-~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~is 168 (1363)
T KOG3628|consen 93 LTDIIAVLRYRRNHSATSTAHICI---D-KKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLIS 168 (1363)
T ss_pred hcchHHHHHhhccCCCCCceEEEE---c-CCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhh
Confidence 344556666666778888898887 4 4455899999999999999999 7888899999999887544 6999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 198 (341)
.++|...|.+++|+.+..+.+++..+++..+.+++++.........+...+. ...+. ...+. .
T Consensus 169 l~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~--s~~k~-------------v~~w~--t 231 (1363)
T KOG3628|consen 169 LFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV--SLAKA-------------VAWWK--T 231 (1363)
T ss_pred hccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc--cHHHH-------------HHhhh--c
Confidence 9999999999999999999999999999999999998887655443322100 00000 00000 0
Q ss_pred eeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhh---------------hccccC
Q 019388 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV---------------VTGKVC 263 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~---------------~~~~~~ 263 (341)
..+..... .+....+..... ..+|-||++++|.--|++.+|+ ++.+.+.+..... ....+.
T Consensus 232 ~~~k~~~~--~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~ 307 (1363)
T KOG3628|consen 232 NDFKGNYT--KDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPV 307 (1363)
T ss_pred ccccceee--hhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcccc
Confidence 01110000 011112222333 8899999999999999999998 6665554433220 001133
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHH
Q 019388 264 SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVY 323 (341)
Q Consensus 264 ~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~ 323 (341)
..+++++..+-.+-..|+.+ ++.+++.|.+.+.++. .+..+.+++.++|++++..--..+
T Consensus 308 ~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~L 372 (1363)
T KOG3628|consen 308 PSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGL 372 (1363)
T ss_pred CcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeeccccc
Confidence 45677777777777788887 7889999999999875 677889999999999987653333
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=80.03 Aligned_cols=114 Identities=17% Similarity=0.126 Sum_probs=88.2
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH-HHHHHHHHHHHHhcCceEEE
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA-HIYDQIIETHCIHKGCSIGF 296 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~-h~~g~~~~l~~l~~G~~~v~ 296 (341)
..++...+--||||||+|+.+.+|+..+..-+..++..+... +...+|++....-.. +..|+..-.++--.|++++=
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 456667799999999999999999999999888888876554 677788766665421 22232333344446666665
Q ss_pred ecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 297 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 297 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
... +.+..+++|+++++|++.++|+.+..|.+.+++.
T Consensus 166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~ 203 (438)
T COG1541 166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEE 203 (438)
T ss_pred cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHc
Confidence 544 8899999999999999999999999999999887
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.018 Score=53.67 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=64.7
Q ss_pred EEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEec--ChHHHHHHHHHHHHHhcC-ceEEEec-
Q 019388 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL--PLAHIYDQIIETHCIHKG-CSIGFWR- 298 (341)
Q Consensus 223 a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~--pl~h~~g~~~~l~~l~~G-~~~v~~~- 298 (341)
..+..||||||.|-.+..+..............+. -.++..++++...+ +. +.+ ..+... ..+-...
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~--~~g~~~g~r~a~~~~~~~-~ly------~~~~~~~~~~~~~~l 172 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVL--PDGLFAKHRIAFFLRADN-NLY------QSVNNRWISLDFFDL 172 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhC--ccccccCCcEEEEEccCh-hHH------HHHHhccceeeecCC
Confidence 45667999999999999998877544443322221 11444555544442 11 111 111111 1122221
Q ss_pred -CCHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 299 -GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 299 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
.+.+..++.|++++|+++.+.|+.+..|++.+++.
T Consensus 173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~ 208 (430)
T TIGR02304 173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEG 208 (430)
T ss_pred CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhc
Confidence 27788999999999999999999999999987663
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.087 Score=48.68 Aligned_cols=92 Identities=10% Similarity=-0.008 Sum_probs=74.5
Q ss_pred eEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCh--HHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeE
Q 019388 75 YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152 (341)
Q Consensus 75 ~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 152 (341)
..-+|+.++...+..+|+.|...|..+||+|..+..-+. .-+...+|+.++|+.++|+.+ -.-+....++++.++.+
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcE
Confidence 346899999999999999999999999999888765221 116788999999999999987 34567788899999999
Q ss_pred EEEcCCChhhHHhhC
Q 019388 153 AFVQENKIPSILSCL 167 (341)
Q Consensus 153 vi~~~~~~~~~~~~~ 167 (341)
|.+.....-.+.+.+
T Consensus 186 I~~tps~~l~lae~~ 200 (438)
T COG1541 186 IAATPSYLLYLAEEA 200 (438)
T ss_pred EEEChHHHHHHHHHH
Confidence 999997665444443
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.41 Score=43.77 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCc-EEEEecChHH---HHHHH--HHHHHHhcC
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEED-TYFSFLPLAH---IYDQI--IETHCIHKG 291 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d-~~l~~~pl~h---~~g~~--~~l~~l~~G 291 (341)
..+++..++-||||||.|--+.+.+..+..+...+...+.... +..... .++...|-.. .++.. ..+.....+
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~-~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFL-GPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhc-ccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 4567788999999999986666766667666655554442111 222222 2333333321 11111 122334455
Q ss_pred ceEEEecC--CHHHHHHHh----hhhcCcEEeccchHHHHHHHHHHHh
Q 019388 292 CSIGFWRG--DVRYLMEDI----QELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 292 ~~~v~~~~--~~~~~~~~i----~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
....+-.. +.+.++..+ .+.++..+++.|.++..+++.+++.
T Consensus 166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~ 213 (365)
T PF04443_consen 166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEER 213 (365)
T ss_pred ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhc
Confidence 55444332 666666555 4667899999999999888866554
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=90.75 E-value=2.2 Score=40.28 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=62.8
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH--HHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEE
Q 019388 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE--WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (341)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (341)
.-+|+.++...+...+..+...|++++|++.++.+.+.. .....+++...|+.++|... .+....++++.++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 467899999888888888888899999999988766543 23456788899998887653 2345678888999988
Q ss_pred EEcCCCh
Q 019388 154 FVQENKI 160 (341)
Q Consensus 154 i~~~~~~ 160 (341)
+......
T Consensus 181 ~~~ps~l 187 (445)
T TIGR03335 181 VASVFKL 187 (445)
T ss_pred EECHHHH
Confidence 8766543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=90.53 E-value=2.8 Score=38.79 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=71.6
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. -..-.+|+..+...+..++..+. ..++..+|++...+|-+. ..+..+++++..|+..+..
T Consensus 8 ~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~--~~g~~~~~~V~i~~~n~~-~~~~~~~A~~~~G~~~v~l 76 (417)
T PF00501_consen 8 YPDRIALID--------DEGRSLTYKQLYERVRKLAAALR--KLGVKKGDRVAILLPNSI-EFVVAFLACLRAGAIPVPL 76 (417)
T ss_dssp STTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHH--HTTSSTTSEEEEEESSSH-HHHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHH--HhCCCccccccccCCccc-eeeeeeccccccccccccc
Confidence 467777765 35677899999999999888774 237888999888888763 2344588899999999998
Q ss_pred cC--CHHHHHHHhhhhcCcEEec
Q 019388 298 RG--DVRYLMEDIQELKPTMFSG 318 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~ 318 (341)
+. ..+.+...+++.++++++.
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 77 DPSLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp ETTSSHHHHHHHHHHHTESEEEE
T ss_pred ccccccccccccccccceeEEEE
Confidence 65 7889999999999999996
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.5 Score=39.53 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=69.7
Q ss_pred CCCCcce--EEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCh--HHHHHHHHHHhcCCeEEeecCCCChhHHHHH
Q 019388 69 DGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQAITYVPLYDTLGANAVEFI 144 (341)
Q Consensus 69 ~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 144 (341)
.|..|.. ..+|..++......++..+...|++++|++....+.+. ......++....|+.++++.... .+.+...
T Consensus 84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 162 (422)
T TIGR02155 84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL 162 (422)
T ss_pred CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence 3444443 35677787777777777888889999999887655442 22334677889999999887654 5778899
Q ss_pred hhcCceeEEEEcCCChhhHHh
Q 019388 145 INHAEVSIAFVQENKIPSILS 165 (341)
Q Consensus 145 l~~~~~~~vi~~~~~~~~~~~ 165 (341)
+++.++.+++........+..
T Consensus 163 i~~~~~t~l~~~Ps~l~~L~~ 183 (422)
T TIGR02155 163 IQDFKPDIIMVTPSYMLNLLE 183 (422)
T ss_pred HHHHCCCEEEEcHHHHHHHHH
Confidence 999999999998876655443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.47 E-value=2.8 Score=40.51 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=78.3
Q ss_pred ceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCc
Q 019388 237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPT 314 (341)
Q Consensus 237 ~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t 314 (341)
|..+|+..+...+..++..+...+.+...+|++...+|.+..+... .++++..|+.+.-.+. ++..+...++.-++.
T Consensus 43 g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~-~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~k 121 (537)
T KOG1176|consen 43 GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVEL-ALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPK 121 (537)
T ss_pred CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHH-HHHHHHcCccccccCcccCHHHHHHHHHhcCCe
Confidence 8999999999999999998865544578899999999988655443 6777888888877654 999999999999999
Q ss_pred EEeccchHHHHHHHHHH
Q 019388 315 MFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 315 ~~~~~P~~~~~l~~~~~ 331 (341)
+++.....+..+.+...
T Consensus 122 iif~d~~~~~~i~~~~~ 138 (537)
T KOG1176|consen 122 LIFVDEDFYDKISEATS 138 (537)
T ss_pred EEEEcCchHHHHHHHHh
Confidence 99999999888865543
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=9.6 Score=36.86 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=71.6
Q ss_pred CCCCeEEEEeCCCCC-CCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEE
Q 019388 218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 296 (341)
Q Consensus 218 ~~~~~a~i~~TSGsT-G~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~ 296 (341)
.++.++++....++. ...+...+|+..+...+..++..+.. .++..+|++...++-+..+ +..+++++..|+..+.
T Consensus 19 ~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~--~g~~~gd~V~~~~~n~~~~-~~~~la~~~~G~~~v~ 95 (552)
T PRK09274 19 RPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNA--AGIGRGMRAVLMVTPSLEF-FALTFALFKAGAVPVL 95 (552)
T ss_pred CCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCcHHH-HHHHHHHHHcCeEEEE
Confidence 345566654332221 22334478999999999988886633 3788999999998866433 2237888999999888
Q ss_pred ecC--CHHHHHHHhhhhcCcEEeccc
Q 019388 297 WRG--DVRYLMEDIQELKPTMFSGVP 320 (341)
Q Consensus 297 ~~~--~~~~~~~~i~~~~~t~~~~~P 320 (341)
.+. ..+.+...+++.++..+...+
T Consensus 96 l~~~~~~~~l~~~l~~~~~~~~i~~~ 121 (552)
T PRK09274 96 VDPGMGIKNLKQCLAEAQPDAFIGIP 121 (552)
T ss_pred cCCCccHHHHHHHHHhcCCCEEEecc
Confidence 764 778888999999999988765
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=85.99 E-value=10 Score=36.24 Aligned_cols=89 Identities=11% Similarity=-0.062 Sum_probs=71.1
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
..+|+..+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+.... ..+.+...+++.++..
T Consensus 35 ~~~Ty~~l~~~~~~~a~~L~~--~gi~~~~~V~l~~~~~~~-~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ 111 (523)
T PRK08316 35 RSWTYAELDAAVNRVAAALLD--LGLKKGDRVAALGHNSDA-YALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARA 111 (523)
T ss_pred ceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCE
Confidence 668999999999888886533 378889998888877654 33448889999998888764 7888999999999999
Q ss_pred EeccchHHHHHHHH
Q 019388 316 FSGVPRVYDRIYTG 329 (341)
Q Consensus 316 ~~~~P~~~~~l~~~ 329 (341)
++........+.+.
T Consensus 112 ii~~~~~~~~~~~~ 125 (523)
T PRK08316 112 FLVDPALAPTAEAA 125 (523)
T ss_pred EEEccchHHHHHHH
Confidence 99988877766543
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=85.30 E-value=15 Score=36.55 Aligned_cols=88 Identities=6% Similarity=-0.055 Sum_probs=69.9
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
..+|++.+...+..++..+.. .++.++|++...+|-+--+-. ..++++..|+.++.... .++.+...+++.++.+
T Consensus 77 ~~lTy~el~~~v~~lA~~L~~--~Gv~~gd~Vai~~~n~~e~~~-~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 153 (651)
T PLN02736 77 KWMTYGEAGTARTAIGSGLVQ--HGIPKGACVGLYFINRPEWLI-VDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAA 153 (651)
T ss_pred EEEEHHHHHHHHHHHHHHHHH--hCCCCCCEEEEEcCCCHHHHH-HHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCE
Confidence 457999999999888886633 378999999998887654333 37788889998887654 8899999999999999
Q ss_pred EeccchHHHHHHH
Q 019388 316 FSGVPRVYDRIYT 328 (341)
Q Consensus 316 ~~~~P~~~~~l~~ 328 (341)
++..+..+..+.+
T Consensus 154 l~~~~~~~~~~~~ 166 (651)
T PLN02736 154 IFCVPQTLNTLLS 166 (651)
T ss_pred EEECHHHHHHHHH
Confidence 9998877665544
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=84.83 E-value=13 Score=35.45 Aligned_cols=85 Identities=7% Similarity=-0.136 Sum_probs=68.3
Q ss_pred eecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEe
Q 019388 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFS 317 (341)
Q Consensus 240 ~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~ 317 (341)
+|+..+...+..+...+.. .++..++++....|-+.. .+..+++++..|+..+..+. ....+...+++.++..++
T Consensus 32 ~Ty~~l~~~~~~~a~~L~~--~g~~~~~~V~l~~~~~~~-~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~ 108 (521)
T PRK06187 32 TTYAELDERVNRLANALRA--LGVKKGDRVAVFDWNSHE-YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVL 108 (521)
T ss_pred EcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEE
Confidence 9999999998888776533 478889999998887653 33348889999999998875 788899999999999998
Q ss_pred ccchHHHHHH
Q 019388 318 GVPRVYDRIY 327 (341)
Q Consensus 318 ~~P~~~~~l~ 327 (341)
........+.
T Consensus 109 ~~~~~~~~~~ 118 (521)
T PRK06187 109 VDSEFVPLLA 118 (521)
T ss_pred EcchHHHHHH
Confidence 8887666553
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=14 Score=36.13 Aligned_cols=85 Identities=8% Similarity=-0.003 Sum_probs=67.2
Q ss_pred eeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEE
Q 019388 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMF 316 (341)
Q Consensus 239 ~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~ 316 (341)
.+|+..+...+..++..+.. .++..+|++...+|-.-.+ ...+++++..|+.++..+. ..+.+...+++.+++.+
T Consensus 39 ~~Ty~eL~~~~~~~a~~L~~--~Gl~~gd~Vai~~~n~~e~-~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~i 115 (579)
T PLN03102 39 RFTWPQTYDRCCRLAASLIS--LNITKNDVVSVLAPNTPAM-YEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKIL 115 (579)
T ss_pred EEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEE
Confidence 68999999999888886633 3788999999999865332 2237889999999888765 88999999999999999
Q ss_pred eccchHHHHH
Q 019388 317 SGVPRVYDRI 326 (341)
Q Consensus 317 ~~~P~~~~~l 326 (341)
+..+.....+
T Consensus 116 i~~~~~~~~~ 125 (579)
T PLN03102 116 FVDRSFEPLA 125 (579)
T ss_pred EEChhhHHHH
Confidence 9877655443
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.15 E-value=4.6 Score=37.89 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=68.0
Q ss_pred cceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcC
Q 019388 236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKP 313 (341)
Q Consensus 236 K~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~ 313 (341)
.++.+|.+.+...+.+++..+.. .|+..+|++..+.|-+.-+-+ +.+++..+|..++-.+. ...++.-.+++.++
T Consensus 74 eg~R~Tf~~~~~ev~slAaGll~--lGL~kGDrVgvwgpN~~~w~l-~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~ 150 (596)
T KOG1177|consen 74 EGIRLTFSEFVSEVESLAAGLLS--LGLKKGDRVGVWGPNSYEWVL-CQLACARAGLVLVNLNPAYQSEELRYVLKKVGC 150 (596)
T ss_pred ccchhhHHHHHHHHHHHHhhHHh--hcCCCCCEEEEecCChHHHHH-HHHHHHHhceEEeccCcccccHHHHHHHhhcCe
Confidence 56779999999999988776533 389999999999998744322 36778888888887754 56677778999999
Q ss_pred cEEeccchHHHH
Q 019388 314 TMFSGVPRVYDR 325 (341)
Q Consensus 314 t~~~~~P~~~~~ 325 (341)
-.++..|.+-..
T Consensus 151 k~l~~p~~~k~~ 162 (596)
T KOG1177|consen 151 KALFAPPQFKTQ 162 (596)
T ss_pred EEEEccchhhhc
Confidence 999999877443
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.89 E-value=22 Score=35.41 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=72.3
Q ss_pred CCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEec
Q 019388 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (341)
Q Consensus 219 ~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~ 298 (341)
++.+|++.-.-+ .+ ....+|++.|...+..++..+.. .++.++|++...+|..--+-. .+++++..|+..+...
T Consensus 75 ~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~lA~~L~~--~Gv~~GDrV~i~~~n~~e~~~-~~lA~~~~Gav~vpl~ 148 (647)
T PTZ00237 75 RDQDALIYECPY-LK--KTIKLTYYQLYEKVCEFSRVLLN--LNISKNDNVLIYMANTLEPLI-AMLSCARIGATHCVLF 148 (647)
T ss_pred CCceEEEEEcCC-CC--ceEEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHHHHH-HHHHHHHhCcEEEeeC
Confidence 456666543221 11 23679999999999988886643 388999999999998744332 3788889998887775
Q ss_pred C--CHHHHHHHhhhhcCcEEeccc
Q 019388 299 G--DVRYLMEDIQELKPTMFSGVP 320 (341)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~~~~~P 320 (341)
. .++.+...+++.++.+++...
T Consensus 149 ~~~~~~~l~~~l~~~~~~~li~~~ 172 (647)
T PTZ00237 149 DGYSVKSLIDRIETITPKLIITTN 172 (647)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcc
Confidence 4 899999999999999998865
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=83.76 E-value=9 Score=37.04 Aligned_cols=85 Identities=9% Similarity=-0.102 Sum_probs=68.3
Q ss_pred eeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEE
Q 019388 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMF 316 (341)
Q Consensus 239 ~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~ 316 (341)
.+|++.+...+..++..+.. .++..+|++...++-+-. .+..+++++..|+.++..+. ..+.+...+++.++..+
T Consensus 74 ~~Ty~el~~~~~~la~~L~~--~gi~~gd~V~i~~~n~~~-~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 150 (549)
T PRK07788 74 TLTYAELDEQSNALARGLLA--LGVRAGDGVAVLARNHRG-FVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKAL 150 (549)
T ss_pred ceeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEE
Confidence 68999999999888886633 378889999888876532 23348889999999998875 78889999999999999
Q ss_pred eccchHHHHH
Q 019388 317 SGVPRVYDRI 326 (341)
Q Consensus 317 ~~~P~~~~~l 326 (341)
...+.+...+
T Consensus 151 i~~~~~~~~~ 160 (549)
T PRK07788 151 VYDDEFTDLL 160 (549)
T ss_pred EECchhHHHH
Confidence 9888776654
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=82.91 E-value=17 Score=36.83 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=75.1
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.-..|..|.+ ...+|+..|...+..++..+.. .++.++|++...+|.+-- .+..+++++..|+..+.+
T Consensus 188 ~pd~~Ai~~~~e~~~~~~-~~~~Ty~eL~~~v~~lA~~L~~--~Gv~~GdrVai~~pn~~e-~via~LA~~~~Gav~vpi 263 (728)
T PLN03052 188 TDDSIAIIWRDEGSDDLP-VNRMTLSELRSQVSRVANALDA--LGFEKGDAIAIDMPMNVH-AVIIYLAIILAGCVVVSI 263 (728)
T ss_pred CCCCeEEEEECCCCCCCc-eEEeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCCEEEee
Confidence 456777765433322222 3568999999999988886633 378999999999997643 233478889999988887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. .++.+...+++.++.+++.....
T Consensus 264 ~p~~~~~~l~~rl~~~~~k~lit~d~~ 290 (728)
T PLN03052 264 ADSFAPSEIATRLKISKAKAIFTQDVI 290 (728)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEcCcc
Confidence 54 88999999999999999887654
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=82.75 E-value=27 Score=31.92 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=83.3
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH-HHHHHHHHHhcCCeEEee
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPL 132 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l 132 (341)
.++.++++.. ..+..| ....+|+..+...+..+.. ..++++++++....+-... .+..+++.+..|+..+..
T Consensus 118 ~~~~~~~i~~--TSGTtG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~ 192 (408)
T TIGR01733 118 GPDDLAYVIY--TSGSTGRPKGVVVTHRSLVNLLAWLAR---RYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVP 192 (408)
T ss_pred CCCCcEEEEE--cCCCCCCCCEEEeccHHHHHHHHHHHH---hcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEc
Confidence 3456666544 123333 3567788888877776665 3356788888887766443 455677888888888776
Q ss_pred cCCCC--hhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccC
Q 019388 133 YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (341)
+.... .+.+..++++.++..+++.......+.+........++.++.-+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~v~~~g~~ 245 (408)
T TIGR01733 193 PEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALPPALASLRLVILGGEA 245 (408)
T ss_pred ChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhhhcccCceEEEEeCcc
Confidence 66554 6889999999999999999987776665543334566666555543
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=82.75 E-value=13 Score=36.64 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=74.5
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.... .+| ....+|++.+...+..++..+.. .++.++|++...+|.+--+ +..+++++..|+..+..
T Consensus 70 ~p~~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~--~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~v~i 143 (625)
T TIGR02188 70 RPDKVAIIWEGD-EPG--EVRKITYRELHREVCRFANVLKS--LGVKKGDRVAIYMPMIPEA-AIAMLACARIGAIHSVV 143 (625)
T ss_pred CCCCeEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEecc
Confidence 456777764322 122 24579999999999988886633 4788999999999876433 33478899999988877
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. .++.+...+++.++..++.....
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 170 (625)
T TIGR02188 144 FGGFSAEALADRINDAGAKLVITADEG 170 (625)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence 54 88999999999999999887654
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=82.55 E-value=17 Score=34.60 Aligned_cols=86 Identities=9% Similarity=-0.078 Sum_probs=67.2
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
..+|+..+...+..++..+.. .+...+|++...+|-.-. .+..+++++..|+..+..+. ....+.+.+++.++..
T Consensus 29 ~~~Ty~~l~~~~~~~a~~L~~--~gv~~g~~V~l~~~~~~~-~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ 105 (513)
T PRK07656 29 QRLTYAELNARVRRAAAALAA--LGIGKGDRVAIWAPNSPH-WVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKA 105 (513)
T ss_pred CceeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCChH-HHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceE
Confidence 358999999988888776532 377889998888876632 33347889999999998765 7788899999999999
Q ss_pred EeccchHHHHH
Q 019388 316 FSGVPRVYDRI 326 (341)
Q Consensus 316 ~~~~P~~~~~l 326 (341)
++..+.....+
T Consensus 106 ii~~~~~~~~~ 116 (513)
T PRK07656 106 LFVLGLFLGVD 116 (513)
T ss_pred EEEchhhHHHH
Confidence 98887765544
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=82.41 E-value=14 Score=35.82 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=72.9
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++... ++.++...+|+..+...+..++..+.. .++.++|++...+|-+..+ ...+++++..|+..+..
T Consensus 37 ~p~~~A~~~~~---~~~~~~~~~Ty~el~~~~~~~a~~L~~--~g~~~g~~Val~~~n~~e~-~~~~la~~~~G~~~vpl 110 (547)
T PRK13295 37 CPDKTAVTAVR---LGTGAPRRFTYRELAALVDRVAVGLAR--LGVGRGDVVSCQLPNWWEF-TVLYLACSRIGAVLNPL 110 (547)
T ss_pred CCCceEEEecC---CCccccceeeHHHHHHHHHHHHHHHHH--hCCCCCCEEEEECCCChHH-HHHHHHHHhcCcEEecc
Confidence 34666665432 223445679999999998888876533 3788999999998876554 33478899999998876
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccch
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPR 321 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~ 321 (341)
.. ..+.+...++..++..+.....
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~ 136 (547)
T PRK13295 111 MPIFRERELSFMLKHAESKVLVVPKT 136 (547)
T ss_pred ccccCHHHHHHHHHhcCceEEEEecc
Confidence 54 7888999999999999887654
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=81.90 E-value=16 Score=36.08 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=74.1
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.... . ......+|++.|...+..++..+.. .++..+|++...+|-+--+- ..+++++..|+..+..
T Consensus 80 ~p~~~Al~~~~~--~-~~~~~~lTy~eL~~~v~~lA~~L~~--~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~v~l 153 (637)
T PRK00174 80 RGDKVAIIWEGD--D-PGDSRKITYRELHREVCRFANALKS--LGVKKGDRVAIYMPMIPEAA-VAMLACARIGAVHSVV 153 (637)
T ss_pred CCCCeEEEEECC--C-CCceEEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEec
Confidence 467777764321 1 1135679999999999998886633 47889999999988764432 2378899999998887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. .++.+...+++.++..++.....
T Consensus 154 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 180 (637)
T PRK00174 154 FGGFSAEALADRIIDAGAKLVITADEG 180 (637)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEcCcc
Confidence 64 88999999999999999876653
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=81.75 E-value=17 Score=35.61 Aligned_cols=98 Identities=5% Similarity=-0.023 Sum_probs=74.2
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.++++.- .-.+|+..+...+..++..+.. .++..+|++...++-+..+ +..+++++..|+..+..
T Consensus 50 ~p~~~Ai~~~---------~~~~Ty~eL~~~~~~la~~L~~--~g~~~gd~V~i~~~n~~~~-v~~~lA~~~~G~~~v~l 117 (600)
T PRK08279 50 HPDRPALLFE---------DQSISYAELNARANRYAHWAAA--RGVGKGDVVALLMENRPEY-LAAWLGLAKLGAVVALL 117 (600)
T ss_pred CCCCcEEEeC---------CCcccHHHHHHHHHHHHHHHHh--cCCCCCCEEEEECCCCHHH-HHHHHHHHhcCcEEeec
Confidence 4566666531 2468999999998888775532 3788899999988776443 34488899999998887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
+. ..+.+...+++.++..++........+.
T Consensus 118 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 149 (600)
T PRK08279 118 NTQQRGAVLAHSLNLVDAKHLIVGEELVEAFE 149 (600)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 65 7788999999999999998877665553
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=81.51 E-value=11 Score=36.36 Aligned_cols=88 Identities=6% Similarity=-0.082 Sum_probs=70.7
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
..+|+..+...+..++..+.. .++..++++...+|-...+ +..+++++..|+..+..+. ..+.+...+++.+++.
T Consensus 45 ~~~Ty~el~~~v~~la~~L~~--~gi~~g~~V~v~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 121 (542)
T PRK06155 45 TRWTYAEAARAAAAAAHALAA--AGVKRGDRVALMCGNRIEF-LDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARL 121 (542)
T ss_pred ccccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCChHH-HHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceE
Confidence 368999999999988886633 3788899999888877554 4448889999999998765 8899999999999999
Q ss_pred EeccchHHHHHHH
Q 019388 316 FSGVPRVYDRIYT 328 (341)
Q Consensus 316 ~~~~P~~~~~l~~ 328 (341)
++..+.....+.+
T Consensus 122 l~~~~~~~~~~~~ 134 (542)
T PRK06155 122 LVVEAALLAALEA 134 (542)
T ss_pred EEEChhhHHHHHH
Confidence 9988877665543
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=81.51 E-value=24 Score=33.71 Aligned_cols=102 Identities=10% Similarity=-0.043 Sum_probs=74.6
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.++++.-.. .|. .-.+|+..+...+..++..+.. .++..+|++....+-+..+- ..+++++..|+.++..
T Consensus 20 ~p~~~a~~~~~~--~~~--~~~~ty~~l~~~v~~la~~L~~--~g~~~~~~v~i~~~n~~~~~-~~~la~~~~G~~~v~l 92 (517)
T PRK08008 20 YGHKTALIFESS--GGV--VRRYSYLELNEEINRTANLFYS--LGIRKGDKVALHLDNCPEFI-FCWFGLAKIGAIMVPI 92 (517)
T ss_pred CCCceEEEcccC--CCc--cceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCeEEEEc
Confidence 456677654221 111 2357999998888888775532 37888999999988775433 3377889999988877
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRI 326 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (341)
.. ..+.+...+++.++..++..+.....+
T Consensus 93 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~ 123 (517)
T PRK08008 93 NARLLREESAWILQNSQASLLVTSAQFYPMY 123 (517)
T ss_pred CcccCHHHHHHHHHhcCceEEEEecchhHHH
Confidence 64 889999999999999999988765544
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=81.43 E-value=16 Score=36.52 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=72.8
Q ss_pred CCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEec
Q 019388 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (341)
Q Consensus 219 ~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~ 298 (341)
++.+|++.... ..| ....+|++.|...+..++..+.. .++.++|++...+|..-- .+..+++++..|+..+...
T Consensus 103 ~~~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~--~Gv~~GdrV~i~~pn~~e-~v~a~lA~~~~Gav~vpv~ 176 (666)
T PLN02654 103 GDKIAIYWEGN-EPG--FDASLTYSELLDRVCQLANYLKD--VGVKKGDAVVIYLPMLME-LPIAMLACARIGAVHSVVF 176 (666)
T ss_pred CCCEEEEEEcC-CCC--ceEEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEecC
Confidence 46666653221 111 23568999999999988886633 378899999999988643 2233788899999888775
Q ss_pred C--CHHHHHHHhhhhcCcEEeccchH
Q 019388 299 G--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
. .++.+...+++.++.+++.....
T Consensus 177 ~~~~~~~l~~~l~~~~~~~li~~~~~ 202 (666)
T PLN02654 177 AGFSAESLAQRIVDCKPKVVITCNAV 202 (666)
T ss_pred CCCCHHHHHHHHHhcCceEEEEcCcc
Confidence 4 88999999999999999987654
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=81.17 E-value=20 Score=35.59 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=72.9
Q ss_pred CCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEec
Q 019388 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (341)
Q Consensus 219 ~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~ 298 (341)
++.+|++.... .| ....+|++.|...+..++..+.. .++.++|++...+|.+-- .+..+++++..|+..+...
T Consensus 98 ~~~~Al~~~~~--~~--~~~~~Ty~eL~~~v~~lA~~L~~--~Gv~~gd~V~i~~~n~~e-~v~~~lA~~~~Gav~v~l~ 170 (655)
T PRK03584 98 DDRPAIIFRGE--DG--PRRELSWAELRRQVAALAAALRA--LGVGPGDRVAAYLPNIPE-TVVAMLATASLGAIWSSCS 170 (655)
T ss_pred CCCeEEEEECC--CC--ceEEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCcEEEeeC
Confidence 46677654322 22 23569999999999988886643 378899999999987643 2334888999999988876
Q ss_pred C--CHHHHHHHhhhhcCcEEeccchH
Q 019388 299 G--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
. .++.+...++..++.+++.....
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (655)
T PRK03584 171 PDFGVQGVLDRFGQIEPKVLIAVDGY 196 (655)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEcccc
Confidence 4 78899999999999999887643
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=81.10 E-value=22 Score=34.41 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=75.4
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.++++...-+. .+|++.+...+..++..+... ++.++|++...+|-+.-+ +..+++++..|+..+..
T Consensus 24 ~~~~~a~~~~~~~~-------~~Ty~el~~~~~~~A~~L~~~--~v~~gdrVail~~N~~e~-~~~~~a~~~~Gav~vpl 93 (534)
T COG0318 24 NPDRPALIFLGRGG-------RLTYRELDRRANRLAAALQAL--GVKPGDRVAILLPNSPEF-LIAFLAALRAGAVAVPL 93 (534)
T ss_pred CCCceEEEEcCCCc-------eeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCHHH-HHHHHHHHhcCEEEeec
Confidence 45666666544333 899999999999988876332 477899999999877443 22378888999999998
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+. ....+...++..++..++.... +..+.+.
T Consensus 94 n~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~ 126 (534)
T COG0318 94 NPRLTPRELAYILNDAGAKVLITSAE-FAALLEA 126 (534)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEccc-chhHHHH
Confidence 76 7888888899889999988877 4444433
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=81.02 E-value=10 Score=36.12 Aligned_cols=87 Identities=9% Similarity=-0.036 Sum_probs=68.5
Q ss_pred eeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEE
Q 019388 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMF 316 (341)
Q Consensus 239 ~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~ 316 (341)
.+|++.+...+..+...+.. .++..+|++...++-+..+ +..+++++..|+..+..+. ..+.+...+++.+++.+
T Consensus 25 ~~ty~~l~~~v~~~a~~l~~--~g~~~~~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~ 101 (515)
T TIGR03098 25 TLTYAALSERVLALASGLRG--LGLARGERVAIYLDKRLET-VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLL 101 (515)
T ss_pred eeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEE
Confidence 68999999988888776532 3678889988888776443 3347889999999888765 88999999999999999
Q ss_pred eccchHHHHHHH
Q 019388 317 SGVPRVYDRIYT 328 (341)
Q Consensus 317 ~~~P~~~~~l~~ 328 (341)
+..+..+..+.+
T Consensus 102 i~~~~~~~~~~~ 113 (515)
T TIGR03098 102 VTSSERLDLLHP 113 (515)
T ss_pred EEccchhhhhHh
Confidence 888776655543
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=80.46 E-value=24 Score=33.34 Aligned_cols=99 Identities=8% Similarity=-0.033 Sum_probs=74.6
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.++++. .+..+|+..+...+..++..+.. ..++.++|++...++-+.. .+..+++++..|+..+..
T Consensus 15 ~p~~~a~~~---------~~~~~ty~~l~~~~~~la~~L~~-~~g~~~~~~V~i~~~~~~~-~~~~~la~~~~G~~~~~~ 83 (496)
T PRK06839 15 HPDRIAIIT---------EEEEMTYKQLHEYVSKVAAYLIY-ELNVKKGERIAILSQNSLE-YIVLLFAIAKVECIAVPL 83 (496)
T ss_pred CCCCeEEEE---------CCceEEHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCHH-HHHHHHHHHhcCcEEEec
Confidence 456666652 14678999999998888776522 1267889999988887744 333488889999988887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
+. .++.+...+++.+++.++..+.....+.
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~ 115 (496)
T PRK06839 84 NIRLTENELIFQLKDSGTTVLFVEKTFQNMAL 115 (496)
T ss_pred CcccCHHHHHHHHHhcCceEEEEcHHHHHHHH
Confidence 64 8888999999999999998887765543
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=80.42 E-value=12 Score=31.77 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=43.5
Q ss_pred HhCCCCCCCeEEEEcCCCh--HHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCce
Q 019388 95 RSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEV 150 (341)
Q Consensus 95 ~~~g~~~~~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 150 (341)
...|+.++|++. .+|-.. -....+++++..|+..+.. +.++++++...+++.++
T Consensus 171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v 226 (227)
T TIGR03089 171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV 226 (227)
T ss_pred hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence 556789999999 887654 3345689999999998887 68999999998887764
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=80.40 E-value=15 Score=34.92 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=69.2
Q ss_pred ceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCc
Q 019388 237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPT 314 (341)
Q Consensus 237 ~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t 314 (341)
+..+|+..+...+..++..+.. .++..+|++...++-+. -.+..+++++..|+..+..+. ....+...+++.+++
T Consensus 26 ~~~~Ty~eL~~~~~~la~~L~~--~g~~~gd~v~i~~~~~~-e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 102 (504)
T PRK07514 26 GLRYTYGDLDAASARLANLLVA--LGVKPGDRVAVQVEKSP-EALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA 102 (504)
T ss_pred CCEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCc
Confidence 4579999999988888876533 37889999988888663 233347888999999887764 788899999999999
Q ss_pred EEeccchHHHHHH
Q 019388 315 MFSGVPRVYDRIY 327 (341)
Q Consensus 315 ~~~~~P~~~~~l~ 327 (341)
.+...+.....+.
T Consensus 103 ~ii~~~~~~~~~~ 115 (504)
T PRK07514 103 LVVCDPANFAWLS 115 (504)
T ss_pred EEEEccchhHHHH
Confidence 9988887766553
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=80.28 E-value=16 Score=36.26 Aligned_cols=99 Identities=8% Similarity=-0.032 Sum_probs=70.5
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++....+.. ..+...+|++.+...+..++..+.. .++.++|++...+|-+.-+ +..+++++..|..+.+.
T Consensus 38 ~p~~~Al~~~~~~~~-~~~~~~~Ty~eL~~~v~~~A~~L~~--~Gi~~gd~V~i~~~n~~e~-~~~~lA~~~~Gi~~pi~ 113 (632)
T PRK07529 38 HPDAPALSFLLDADP-LDRPETWTYAELLADVTRTANLLHS--LGVGPGDVVAFLLPNLPET-HFALWGGEAAGIANPIN 113 (632)
T ss_pred CCCCceEEeecccCC-CCCCceeEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHHH-HHHHHHHHHhCEEEeCC
Confidence 456677765433211 2345679999999999988887643 3788999999999976543 33367777888533222
Q ss_pred cC-CHHHHHHHhhhhcCcEEeccc
Q 019388 298 RG-DVRYLMEDIQELKPTMFSGVP 320 (341)
Q Consensus 298 ~~-~~~~~~~~i~~~~~t~~~~~P 320 (341)
+. .++.+...+++.++..++...
T Consensus 114 ~~~~~~~i~~~l~~~~~~~li~~~ 137 (632)
T PRK07529 114 PLLEPEQIAELLRAAGAKVLVTLG 137 (632)
T ss_pred CcCCHHHHHHHHHhcCCcEEEEeC
Confidence 33 889999999999999998864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 341 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 4e-13 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 5e-07 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 2e-06 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-06 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 7e-06 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 2e-05 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-05 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 3e-05 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 3e-05 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 3e-05 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 3e-05 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 5e-05 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 5e-05 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 6e-05 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 7e-05 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 7e-05 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 7e-05 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 7e-05 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 7e-05 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 7e-05 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-04 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 2e-04 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-04 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 3e-04 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-04 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 5e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 6e-38
Identities = 48/251 (19%), Positives = 87/251 (34%), Gaps = 22/251 (8%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LT+++ A R S + GV+ GDR I NC E I + A +P+ L
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A+ + F++ S+ + + LP +K + + S
Sbjct: 92 ADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG-VKKAYAIGDGSG------------ 138
Query: 198 CFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
+ F L P + I++T+ G P+G +++ ++ S+ +
Sbjct: 139 --PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW 196
Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
+T E D LPL H+ + G + D DI+ K T+
Sbjct: 197 RLT-----EADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTV 251
Query: 316 FSGVPRVYDRI 326
+ + I
Sbjct: 252 MAEFAPMLGNI 262
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 8e-38
Identities = 51/247 (20%), Positives = 84/247 (34%), Gaps = 22/247 (8%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY ++ A R + + G+ GDR + N E+ VP+ L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
A V FI++ + + P I + + T+ +
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADP-PGTVTDWIGAD------------- 149
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
S E L+ D + IMYTSGTTG PKGVV T++++ + S
Sbjct: 150 --SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMF 316
V D LP+ H+ +G ++ D + I E + +
Sbjct: 208 VR-----YRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIG 262
Query: 317 SGVPRVY 323
VP +
Sbjct: 263 GAVPAIL 269
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-37
Identities = 48/251 (19%), Positives = 98/251 (39%), Gaps = 25/251 (9%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y E+ A R + + +RG+ GDR E ++ A Y+PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ I AE I +K I + + ++T+
Sbjct: 89 LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-------------- 134
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
S + + + +++ I+YTSGTTG KG +L++ + + L++ +
Sbjct: 135 --SLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
T +D LP+ H + + ++ + S+ F D +++ + + T+
Sbjct: 193 FT-----PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATV 245
Query: 316 FSGVPRVYDRI 326
GVP Y R+
Sbjct: 246 LMGVPTFYTRL 256
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-36
Identities = 44/283 (15%), Positives = 91/283 (32%), Gaps = 25/283 (8%)
Query: 47 QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
+ A++ ++ + G TYQ +Y A + R
Sbjct: 5 FWLYKQAQQNGHHIAITDGQES-----------YTYQNLYCEASLLAKRL---KAYQQSR 50
Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL 164
G+Y N + II + AC I + L N + + +V + F
Sbjct: 51 VGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGF 110
Query: 165 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIST 224
+ + ++ + + + + +I++
Sbjct: 111 QIVSLDDI---EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIAS 167
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
IM+TSGTTG K V T + A + + + + S LP+ HI +
Sbjct: 168 IMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFD-----RDTNWLSVLPIYHISGLSVL 222
Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRI 326
+ +G ++ + ++ I+ + T S VP+ + +
Sbjct: 223 LRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL 265
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-35
Identities = 53/287 (18%), Positives = 104/287 (36%), Gaps = 38/287 (13%)
Query: 46 WQFFCDSAKRIPNN----QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
+A++ + + + E+ + + S + +GV
Sbjct: 22 ADRIDAAAEKFGEKTAIISAEPKFPSEFPES-----MNFLEICEVTKKLASGISRKGVRK 76
Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
G+ G+ N ++++ + A A T VP+ + +E I+N +E + V
Sbjct: 77 GEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYE 136
Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPP-KKKT 220
+ L + ++ + +G S E + G+ D E +
Sbjct: 137 NFKPVLEKTG--VERVFV--------------VGGEVNSLSEVMDSGSEDFENVKVNPEE 180
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
+++ I YT GTTG PKGV+LT+ + A L + ++ DT +P+ H +
Sbjct: 181 DVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH-----MDTIVGCMPMFHSAE 235
Query: 281 QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVY 323
+ + G F + L E+I++ K T VP
Sbjct: 236 FGLVNLMVTVGNEYVVMGMF---NQEMLAENIEKYKGTFSWAVPPAL 279
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-35
Identities = 46/289 (15%), Positives = 95/289 (32%), Gaps = 31/289 (10%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
+R + G +Y E + + G A+++ G+ R
Sbjct: 26 GTQLRKYMERYAKLGAIAFTNAVTGVD-----YSYAEYLEKSCCLGKALQNYGLVVDGRI 80
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
+ NC E+ I + A + P + + + ++ +I F + + +++
Sbjct: 81 ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVIT 140
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC-------ELPPKK 218
++ + V + F++ T + +
Sbjct: 141 VQKTVTTIKTIVILDSKVDYR----------GYQCLDTFIKRNTPPGFQASSFKTVEVDR 190
Query: 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
K ++ IM +SG+TG PKGV LT++ IV G S + +P H
Sbjct: 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVSPGTAVLTVVPFHHG 248
Query: 279 YDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVY 323
+ + G + F D ++ +Q+ K T VP ++
Sbjct: 249 FGMFTTLGYLICGFRVVMLTKF---DEETFLKTLQDYKCTSVILVPTLF 294
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-35
Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 30/283 (10%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
+ ++ + L ++G V TY +V A R S + G+ GD
Sbjct: 25 HSYVLENLSNHSSKPCL--INGANGDV-----YTYADVELTARRVASGLNKIGIQQGDVI 77
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
++ + PE+++A + + + + + Q +
Sbjct: 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
+ + + S + C + E Q + ++ +
Sbjct: 138 FARESDVKVMCVDSAPD--------------GCLHFSELTQADENEAPQVDISPDDVVAL 183
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
Y+SGTTG PKGV+LT++ ++ V ED LP+ HIY
Sbjct: 184 PYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVLPMFHIYALNSIM 242
Query: 286 HC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVY 323
C + G I F ++ L+ I++ K ++ VP V
Sbjct: 243 LCGLRVGAPILIMPKF---EIGSLLGLIEKYKVSIAPVVPPVM 282
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-34
Identities = 52/284 (18%), Positives = 94/284 (33%), Gaps = 32/284 (11%)
Query: 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
+ + + D TY E+ + A RF SA+R+ GV+P +R
Sbjct: 27 AYLFRLNETRAGKTAY----IDDTGS-----TTYGELEERARRFASALRTLGVHPEERIL 77
Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
+ + +A + V L +++ H+ + ++
Sbjct: 78 LVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQA 137
Query: 167 LPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
L + IVS + E +EE + + +I+
Sbjct: 138 LESAEHDGCQLIVS---------QPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFW 188
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC---SEEDTYFSFLPLAHIYDQI 282
+Y+SG+TG+PKG V T+ + + K +E D FS L Y
Sbjct: 189 LYSSGSTGKPKGTVHTHANLYW-------TAELYAKPILGIAENDVVFSAAKLFFAYGLG 241
Query: 283 IETH-CIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVY 323
+ G + + + E +PT+F GVP +Y
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 45/257 (17%), Positives = 94/257 (36%), Gaps = 26/257 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E ++ ++R AM+ G+N R + N ++ + + + P D
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +N ++ ++ FV + + IL+ + + K I+ +++
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIM----------DSKTDYQG 160
Query: 198 CFSWEEFLQ----LGTLDCELPPKK---KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
S F+ G + + P+ I+ IM +SG+TG PKGV L ++
Sbjct: 161 FQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFS 220
Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLME 306
+ G + S +P H + + G + F + +
Sbjct: 221 HARD--PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF---EEELFLR 275
Query: 307 DIQELKPTMFSGVPRVY 323
+Q+ K VP ++
Sbjct: 276 SLQDYKIQSALLVPTLF 292
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-33
Identities = 56/286 (19%), Positives = 100/286 (34%), Gaps = 28/286 (9%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
+ + L +G G TY +V+ + + + GVN D
Sbjct: 64 HDYIFQNISEFATKPCL-----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDVV 116
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
+ NCPE++++ A + + T + + + + + I
Sbjct: 117 MLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKP 176
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN---I 222
+ + I +V + C + E Q T E+ + + +
Sbjct: 177 LQNDDGVVIVCIDDNESVPIPE---------GCLRFTELTQSTTEASEVIDSVEISPDDV 227
Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
+ Y+SGTTG PKGV+LT++ +V V +D LP+ HIY
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYALN 286
Query: 283 IETHC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVY 323
C + G +I F ++ L+E IQ K T+ VP +
Sbjct: 287 SIMLCGLRVGAAILIMPKF---EINLLLELIQRCKVTVAPMVPPIV 329
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-32
Identities = 38/248 (15%), Positives = 79/248 (31%), Gaps = 24/248 (9%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LT+ E+ + + + G+ P R + N + +IA+ A + L L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ + +I E++ A + + + + + I +
Sbjct: 90 SAELAELIKRGEMTAAVIAVG--RQVADAIFQSGSGARIIF-----------------LG 130
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ E P ++ + I YTSGTTG PK ++ +A + VL +
Sbjct: 131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV- 189
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
G + +PL H+ + + ++ +Q+ + T
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247
Query: 316 FSGVPRVY 323
P
Sbjct: 248 LFATPTHL 255
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 8e-30
Identities = 45/251 (17%), Positives = 83/251 (33%), Gaps = 44/251 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY E+ AA + + R ++ + E +A+ A + VPL G
Sbjct: 49 LTYAELAAAAGAT-----AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ I++ + S+ +
Sbjct: 104 DKELAHILSDSAPSLVLAPP-------------------------------DAELPPALG 132
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ + + ++YTSGTTG PKG V+ +A+ + ++ +
Sbjct: 133 ALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
T ED LPL H++ ++ + +G S+ ++ + TM
Sbjct: 193 WT-----GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATM 246
Query: 316 FSGVPRVYDRI 326
GVP +Y RI
Sbjct: 247 LFGVPTMYHRI 257
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 36/250 (14%), Positives = 77/250 (30%), Gaps = 25/250 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y+E+ AA ++R +G+ PG+ + N E I A + V +
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 138 ANAVEFIINHAEVSIAFVQENKIPS----ILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193
+ + + E ++ L+ ++ +
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLN------------ 158
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
+ ++ + D P ++ + GTTG PK + T+ V
Sbjct: 159 -DSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV 217
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCSIGFWRG-DVRYLMEDIQE 310
++ T ++ Y +P AH Y G ++ I++
Sbjct: 218 EICQFT-----QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEK 272
Query: 311 LKPTMFSGVP 320
+ + + VP
Sbjct: 273 HQVNVTALVP 282
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 9e-27
Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 54/291 (18%)
Query: 46 WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
D A + + + G +Y+E+ A R + + G+ D
Sbjct: 28 GDLLRDRAAKYGDRIAITCGNTH-----------WSYRELDTRADRLAAGFQKLGIQQKD 76
Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---- 159
R + N E+ + A V + ++ + + AE + + +
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 160 ----IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 215
+ S LP LK I+ EAEE + L T +LP
Sbjct: 137 YRSLARQVQSKLP----TLKNIIVAG--------EAEE-------FLPLEDLHTEPVKLP 177
Query: 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275
K ++++ + + G+TG K + T+ + + ++ + Y + LP+
Sbjct: 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLD-----HSTVYLAALPM 232
Query: 276 AHIYDQIIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVP 320
AH Y ++ G + I+ K T+ + VP
Sbjct: 233 AHNYPLSSPGVLGVLYAGGRVVLSPSP---SPDDAFPLIEREKVTITALVP 280
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 35/285 (12%), Positives = 77/285 (27%), Gaps = 38/285 (13%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
+ + P++ + + + L+Y E+ + + + +G+ GD
Sbjct: 33 TRILTVGVQSHPHSLAI----ICGERQ-----LSYIELDRLSTNLATRLAEKGLGKGDTA 83
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN----KIP 161
+ N E+ I A + + + + I + +
Sbjct: 84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNN 143
Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
+ L L + I+ + W E +
Sbjct: 144 QFIDSLHDVNLSPEIILML---------NHQATDFGLLDWIE--TPAETFVDFSSTPADE 192
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
++ + G+TG PK + T+ V + ++ + LP H +
Sbjct: 193 VAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN-----SNTRLLCALPAPHNFML 247
Query: 282 IIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVP 320
+H G + + IQ + M S VP
Sbjct: 248 SSPGALGVLHAGGCVVMAPNP---EPLNCFSIIQRHQVNMASLVP 289
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 4e-23
Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 25/253 (9%)
Query: 78 LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
++E+ + + + + + G+ GDR + PEW + + C + ++P +
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
+ + + + ++ + I + + C L+ + + E+
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC-PSLRIKLLVS----------EKSCD 182
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
++++ L + S I +TSGT+G PK + ++ +
Sbjct: 183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT 242
Query: 257 VVTGKVCSEEDTYFSFLPLA---HIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
+ D ++ +I ++E G D +++ +
Sbjct: 243 GLQ-----ASDIMWTISDTGWILNILCSLMEP--WALGACTFVHLLPKFDPLVILKTLSS 295
Query: 311 LKPTMFSGVPRVY 323
G P VY
Sbjct: 296 YPIKSMMGAPIVY 308
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 16/176 (9%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
T++++ + + + G+ GD + + ++ M + VP L
Sbjct: 87 FTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLK 146
Query: 138 ANAVEFIINHAEVS--IAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ + I A + + +++ + C I E
Sbjct: 147 TRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC----GDIPLKKAKVGGDVLEGWI-- 200
Query: 196 VSCFSWEEFLQLGTLDCELP-PKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIVA 247
+ + L+ + E P + T I + ++SGT G PK V N +
Sbjct: 201 ----DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG 252
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 57/224 (25%), Positives = 86/224 (38%), Gaps = 43/224 (19%)
Query: 67 VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
VS G TY EVY A R +R+ GV GDR G N +EA
Sbjct: 37 VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR---HLEA----- 88
Query: 127 ITY--VPLYDTLGA-----------NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY 173
Y VP +GA + +I+NHAE + N +P + +
Sbjct: 89 --YFAVPG---MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKT 142
Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTG 233
++ V E+ ++EE L +P + + YT+GTTG
Sbjct: 143 VQHFVVM----------DEKAPEGYLAYEEALGEEADPVRVP---ERAACGMAYTTGTTG 189
Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
PKGVV +++A+V L+ + SE+D +P+ H
Sbjct: 190 LPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFH 230
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 4e-18
Identities = 38/201 (18%), Positives = 76/201 (37%), Gaps = 23/201 (11%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY+++ A + +++ G PGDR + + I A C VP+Y
Sbjct: 41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILS-CLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
++ K I++ P L + + + + L +
Sbjct: 101 EKLLD----------------KAQRIVTNSKPVIVLMIADHIKKF-TADELNTNPKFLKI 143
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
+ E + + K +I+ + YTSG+T PKGV++++ ++ + + F
Sbjct: 144 PAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF 203
Query: 257 VVTGKVCSEEDTYFSFLPLAH 277
+ +E FS+LP H
Sbjct: 204 HMN-----DETIIFSWLPPHH 219
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 4e-17
Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 25/230 (10%)
Query: 53 AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112
A+ P++ G + LT+ ++Y + + G GDR I
Sbjct: 34 ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92
Query: 113 PEWIIAMEACNSQAITYVPLYDTLGANAVE---FIINHAEVSIAFVQENKIPSILSCLPR 169
E+++A VPL G E +++ + + + ++ + R
Sbjct: 93 LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR 152
Query: 170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTS 229
E S + + + + + YTS
Sbjct: 153 --------------------RPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTS 192
Query: 230 GTTGEPKGVVLTNQAIVAEVLSVDQMFVVT-GKVCSEEDTYFSFLPLAHI 278
G+T P GVV+++Q + + + + S+LP H
Sbjct: 193 GSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 45/179 (25%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
L+Y+E+ + A R ++ G G +Y E +I + + Y+P+
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGI-----LGVLKAGAAYLPV 544
Query: 133 ---Y--DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ 187
D + +++ + + + + T+ +
Sbjct: 545 DPKLPEDRI-----SYMLADSAAACLLTHQ----EMKEQAAELPYTGTTLFIDDQTRFEE 595
Query: 188 KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
+ + P + + IMYTSGTTG+PKG + T+ I
Sbjct: 596 QASD------------------PATAIDPN---DPAYIMYTSGTTGKPKGNITTHANIQ 633
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 4e-08
Identities = 28/174 (16%), Positives = 48/174 (27%), Gaps = 41/174 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
+ Y+++ D+A + + PG G+YG E I + AI Y+ +
Sbjct: 53 VDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL-----LAILLSGHHYLYI 107
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
A + + + S+ A
Sbjct: 108 DLKQPAAWNAELCRQVDCRLILDC----------------------------STTPTPAN 139
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
L I+ I ++SGTTG PK + T+ I
Sbjct: 140 GLPCVPVRHLPAAPASVARPCFAA---DQIAYINFSSGTTGRPKAIACTHAGIT 190
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 5e-08
Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 49/207 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
LTY E+ A + +G+ GI + I + A+ YVP+
Sbjct: 65 LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI-----LAVLKAGGAYVPI 119
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
+++I++ ++ + Q+ ++ + +
Sbjct: 120 DIEYPKERIQYILDDSQARMLLTQK----HLVHLIHNIQFNGQVE--------------- 160
Query: 193 ELGVSCFSWEEFLQLGT--LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
F + L T+++ ++YTSGTTG PKG +L ++ I +
Sbjct: 161 -----IFEEDTIKIREGTNLHVPSKS---TDLAYVIYTSGTTGNPKGTMLEHKGISNLKV 212
Query: 251 SVDQMFVVTGKVCSEEDTY-----FSF 272
+ VT E+D SF
Sbjct: 213 FFENSLNVT-----EKDRIGQFASISF 234
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 38/264 (14%), Positives = 79/264 (29%), Gaps = 68/264 (25%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
+TY+++ + + + S + +YG PE II Y+P+
Sbjct: 27 ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINF-----LGCVKAGHAYIPV 81
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
++ A+ V+ I ++ + + L LK I ++
Sbjct: 82 DLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTP------ 135
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
+ + I+YTSG+TG PKGV +T +V+
Sbjct: 136 ----------------NPEHAVKG---DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWA 176
Query: 253 DQMFVVTGKVCSEEDTY-----FSF--------LPL---AHIYDQIIETHCIHKGCSIGF 296
+ F + + FSF L ++ +
Sbjct: 177 VEDFNLQ-----TGQVFLNQAPFSFDLSVMDIYPSLVTGGTLW---AIDKDMIA------ 222
Query: 297 WRGDVRYLMEDIQELKPTMFSGVP 320
+ L +++ +++ P
Sbjct: 223 ---RPKDLFASLEQSDIQVWTSTP 243
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 33/184 (17%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
TY+++ + A + + + + G + + I TYVP+
Sbjct: 56 WTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII-----VGIMKSGNTYVPI 109
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
L + F++ + ++AFV +N + L K N+S+
Sbjct: 110 EAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQD----- 164
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
+ P + ++YTSG+TG PKGV ++ + + +
Sbjct: 165 --------------TSDILNNYPE---NLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAW 207
Query: 253 DQMF 256
++
Sbjct: 208 GKLI 211
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
++Y+E++ RF + + G+ GD IY PE +AM AC
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-07
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 37/174 (21%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-----YVPL 132
TY ++ + + + S + ++G+ + + A+T Y+P+
Sbjct: 30 RTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATF-----VALTKSGHAYIPV 84
Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
+ II A+ S+ E + P + + L
Sbjct: 85 DVHSAPERILAIIEIAKPSLIIAIE-EFPLTIEGISLVSL-------------------- 123
Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
L + K + I++TSGTTG+PKGV +++ ++
Sbjct: 124 -----SEIESAKLAEMPYER-THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 78 LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEAC 122
+TY+E+ + + + S GV GD +Y PE II + A
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAI 159
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF 272
I+YTSG+TG PKGV ++ + + + F V+ + FSF
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS-----GGKIFLNQAPFSF 195
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 341 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.78 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.64 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.64 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.63 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.63 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.66 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.5 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 92.82 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 90.9 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 90.63 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 90.6 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 90.48 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 90.05 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 89.61 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 88.35 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 87.65 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 87.27 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 87.21 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 87.15 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 86.62 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 86.55 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 86.53 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 85.87 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 85.63 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 85.23 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 83.91 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 83.68 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 83.22 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 82.93 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 82.44 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 81.42 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 80.98 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=317.73 Aligned_cols=277 Identities=19% Similarity=0.216 Sum_probs=235.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCC--CCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcC
Q 019388 33 DGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDG--KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110 (341)
Q Consensus 33 ~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~ 110 (341)
..+|..+.+..++.++|.+.++++|+++|+++. ++ ..+.++++||+||.++++++|+.|.++|+++||+|+++++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 345555566789999999999999999999987 42 1334478999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHH
Q 019388 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE 190 (341)
Q Consensus 111 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (341)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .+..++.++..
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~------- 156 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE------- 156 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS-------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC-------
Confidence 999999999999999999999999999999999999999999999998776665543322 35566665532
Q ss_pred hhhhCccceeHHHHHHcCCCCCCCCCCCC-CCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEE
Q 019388 191 AEELGVSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY 269 (341)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (341)
...+.++..............+ +++++++|||||||.||||+++|+++.+++......+ ++..+|++
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 224 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI 224 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence 3456666655532223333344 8999999999999999999999999999999988877 88999999
Q ss_pred EEecChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 270 FSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 270 l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
++.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|++.....
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 289 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESS 289 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHS
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhh
Confidence 999999999999888889999999999876 9999999999999999999999999999876654
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=307.53 Aligned_cols=268 Identities=23% Similarity=0.267 Sum_probs=224.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++|+++|+.+. ++ +..+++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 22 2347899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++.+....+..... ..+.++.++.++..... ....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAPE----------GYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCCT----------TCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHh-hCCCccEEEEecCCCCc----------ccccH
Confidence 99999999999999999999999999999999999877665544332 22455666666543210 13456
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhh--hhhhhhccccCCCCcEEEEecChHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
+++...... .....++++++++|||||||.||||++||++++.++... ...+ +++.+|++++.+|++|.+
T Consensus 161 ~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 161 EEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp HHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred HHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence 665443311 134567899999999999999999999999998776652 2333 778899999999999999
Q ss_pred HHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.....
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 288 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST 288 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc
Confidence 99778889999999999863 9999999999999999999999999999876543
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=314.53 Aligned_cols=284 Identities=17% Similarity=0.203 Sum_probs=230.5
Q ss_pred CCCcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCC
Q 019388 21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (341)
Q Consensus 21 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~ 100 (341)
..+.+++...+...+|. ..++.++|.+.++++|+++|+++. +++ +++||+||.++++++|++|.++|++
T Consensus 4 ~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 34455665555444433 478999999999999999999874 332 6899999999999999999999999
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEe
Q 019388 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (341)
Q Consensus 101 ~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (341)
+||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+....... ...++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES---DVKVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH---TCEEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc---CceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999998776655443221 1245555
Q ss_pred ccCCchhhHHhhhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcc
Q 019388 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG 260 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~ 260 (341)
+.... ....+.++........+.....++++++++|||||||.||||++||+++++.+....... ...
T Consensus 150 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~ 217 (536)
T 3ni2_A 150 DSAPD-----------GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NPN 217 (536)
T ss_dssp SCCCT-----------TCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SCS
T ss_pred cCCCC-----------CccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-ccc
Confidence 43321 244566665543223344456789999999999999999999999999998877643321 011
Q ss_pred ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 261 ~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.++..+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++..
T Consensus 218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 289 (536)
T 3ni2_A 218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP 289 (536)
T ss_dssp SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS
T ss_pred ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc
Confidence 26788999999999999999976 7889999999999876 9999999999999999999999999998653
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=309.03 Aligned_cols=264 Identities=20% Similarity=0.203 Sum_probs=218.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++|+++|+++. +. ..++||+||.++++++|+.|.++|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 56689999999999999999999875 32 268999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++.+.. ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987765554332211 11111111111 11
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
.+.+.........+.....++++++++|||||||.||||++||+++.+.+......+ +++.+|++++.+|++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 224 (517)
T 3r44_A 150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVA 224 (517)
T ss_dssp HHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHH
T ss_pred cHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHH
Confidence 334444433333344556789999999999999999999999999999999988877 889999999999999999
Q ss_pred HHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
|+..++.+++.|+++++.+. ++..+++.|+++++|++.++|++++.|.+...
T Consensus 225 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 277 (517)
T 3r44_A 225 ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE 277 (517)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH
T ss_pred HHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc
Confidence 99885565569999999876 99999999999999999999999999987544
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=307.45 Aligned_cols=266 Identities=13% Similarity=0.121 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|.+.++++|+++|+++. + +++||+||.++++++|+.|.++|+++||+|+++++|++++++++|
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh----hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
||+++|++++|+++.++.+++.+++++++++++|++..... ...............++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 99999999999999999999999999999999999987541 111222222344555666554321
Q ss_pred cceeHHHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 019388 197 SCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275 (341)
Q Consensus 197 ~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (341)
...+.++.... ..........++++++++|||||||.||||+++|+++.+++......+ ++..+|++++.+|+
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~ 241 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPA 241 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCc
Confidence 22344454443 222223456789999999999999999999999999999999988877 89999999999999
Q ss_pred HHHHHHHH--HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 276 AHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 276 ~h~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
+|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++....
T Consensus 242 ~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 301 (544)
T 3o83_A 242 PHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ 301 (544)
T ss_dssp TSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT
T ss_pred ceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh
Confidence 99999984 7889999999999876 999999999999999999999999999887643
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=305.56 Aligned_cols=261 Identities=20% Similarity=0.249 Sum_probs=218.4
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|.+.++++||++|+.+. + +++||+||.++++++|++|.++|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4689999999999999999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.+++++++++++|++.+....+..... ....+..++.++.... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------C
Confidence 999999999999999999999999999999999999988766444432 3345666776664321 1
Q ss_pred HHHHHH-cCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 201 WEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
+..+.. ............++++++++|||||||.||||++||+++.+.+......+ +++++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222 11223334556789999999999999999999999999999999988877 899999999999999999
Q ss_pred HHHHHHHHH-hcCceEEEecCCHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 280 DQIIETHCI-HKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 280 g~~~~l~~l-~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
|+..++..+ ..|+++++..+++..+++.|+++++|++.++|+++..|++..
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 266 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA 266 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc
Confidence 998866544 455555555459999999999999999999999999998764
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=310.93 Aligned_cols=281 Identities=17% Similarity=0.214 Sum_probs=224.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCh
Q 019388 34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP 113 (341)
Q Consensus 34 ~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~ 113 (341)
+.+..+....|+.++|.+.++++|++++++... ++.. .+++||+||.++++++|++|.++|+++||+|+++++|++
T Consensus 11 ~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 86 (550)
T 3rix_A 11 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL 86 (550)
T ss_dssp CCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT
T ss_pred CCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Confidence 345566677899999999999999999986220 1111 168999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhh
Q 019388 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (341)
Q Consensus 114 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 193 (341)
++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+...... .+.+..++.++.....
T Consensus 87 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------- 158 (550)
T 3rix_A 87 QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQKIIIMDSKTDY------- 158 (550)
T ss_dssp TTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHH-CTTCCEEEETTCSSCB-------
T ss_pred cHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhh-CCCcceEEEEcCCccc-------
Confidence 99999999999999999999999999999999999999999999877666554332 2556677776654321
Q ss_pred hCccceeHHHHHHcCCC-------CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCC
Q 019388 194 LGVSCFSWEEFLQLGTL-------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~ 266 (341)
.....+.++...... ..+.....++++++++|||||||.||||++||+++...+......+ ...++..+
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~ 234 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPD 234 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTT
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCC
Confidence 124556666543311 1112222457899999999999999999999999998887655431 11267789
Q ss_pred cEEEEecChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 267 DTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 267 d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
|++++.+|++|.+|+..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++..
T Consensus 235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 299 (550)
T 3rix_A 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST 299 (550)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC
T ss_pred cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc
Confidence 999999999999999888889999999999876 9999999999999999999999999998754
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=307.08 Aligned_cols=262 Identities=16% Similarity=0.148 Sum_probs=217.5
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++|+++|+.+. + +++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh----hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcc
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
|+++|++++|+++.++.+++.+++++++++++|++++... ..........+.++.++..+....
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999885321 111111112234445555443210
Q ss_pred ceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 019388 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (341)
+.++..............++++++++|||||||.||||++||+++.+.+......+ +++.+|++++.+|++|
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 163 ---FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (539)
T ss_dssp ---SEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred ---hhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccc
Confidence 11111111111123445678999999999999999999999999999998877777 8889999999999999
Q ss_pred HHHHHH--HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 278 ~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++....
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 292 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASS 292 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccc
Confidence 999974 8889999999999876 999999999999999999999999999987654
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=300.43 Aligned_cols=251 Identities=18% Similarity=0.235 Sum_probs=206.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
+.++.++|.+.++++||++|+.+. +++ +++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 368999999999999999999864 322 7899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEE--cCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|+++|++++|+++.++.+++.+++++++++++|+ +.+..+.+.... ..++ ++.++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~~~------------------ 130 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIFLG------------------ 130 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEEGG------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEEec------------------
Confidence 9999999999999999999999999999999999 665444331211 1111 22222
Q ss_pred eHHHHHHcC-----CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccC--CCCcEEEEe
Q 019388 200 SWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSF 272 (341)
Q Consensus 200 ~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (341)
++.... ..........++++++++|||||||.||||++||+++.+.+......+ ++ ..+|++++.
T Consensus 131 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 131 ---DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp ---GTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred ---chhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 111110 111112345678999999999999999999999999999888876666 66 788999999
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|++..
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 262 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAA 262 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhh
Confidence 99999999965 8889999999999875 9999999999999999999999999998865
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=309.19 Aligned_cols=276 Identities=18% Similarity=0.255 Sum_probs=223.2
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
.+++.++|++.++++|+++|+++. ++..+..+++||+||.++++++|+.|+ ++|+++||+|+++++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 468899999999999999999985 333445589999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh---------hHHhhCcccCCcccEEEEeccCCchhhHHh
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEA 191 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (341)
||+++|++++|+++.++.+++.++++++++++||+++.... .+.... ...+.++.+++++.......
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~~--- 233 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL-RETPGVRHVLVYRKTNNPSV--- 233 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT-TSCTTCCEEEEECSSCCSSC---
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHH-HhCCCCceEEEEecCCCCcc---
Confidence 99999999999999999999999999999999999886532 122222 22245667777764321000
Q ss_pred hhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 019388 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (341)
.........|.++........+.....++++++|+|||||||+||||+++|++++.++.. ....+ ++..+|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 308 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF 308 (663)
T ss_dssp CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred ccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 000011345777765432223344557899999999999999999999999999877653 33445 788999999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..|++|++|... ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.|++.
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 373 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRA 373 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTS
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhc
Confidence 9999999999965 8899999999999863 789999999999999999999999998764
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=308.92 Aligned_cols=278 Identities=14% Similarity=0.214 Sum_probs=223.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.+++.++|++.++++||++|+++. ++..+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 457889999999999999999975 43344568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh---------hHHhhCcccC-CcccEEEEeccCCchhhHHh
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCC-LYLKTIVSFANVSSSQKKEA 191 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 191 (341)
|+++|++++|+++.++.+++.++++++++++||+++.... .+........ ..+..+++++.......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999999999876431 1222211110 23566777654321000
Q ss_pred hhhCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHh-hhhhhhhhccccCCCCcEEE
Q 019388 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL-SVDQMFVVTGKVCSEEDTYF 270 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~-~~~~~~~~~~~~~~~~d~~l 270 (341)
........|++++.............++++++|+|||||||+||||+++|++++.++. .....+ ++..+|+++
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l 302 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW 302 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred -ccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0001134677776544222333445679999999999999999999999999987764 344445 788999999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
+..|++|++|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|++...
T Consensus 303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 369 (652)
T 1pg4_A 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369 (652)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG
T ss_pred EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCc
Confidence 9999999999965 8899999999999863 78999999999999999999999999987543
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=300.86 Aligned_cols=271 Identities=13% Similarity=0.138 Sum_probs=224.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 39 ~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
|.......++|++.++++|+++|+++. + ..+..+++||+||.++++++|++|+++|+++||+|+++++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~-~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---D-DYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---E-SSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---c-CCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 345566779999999999999999976 3 234568999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh--hhHHhhCcccCCcc-cEEEEeccCCchhhHHhhhhC
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELG 195 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 195 (341)
+|||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+....... +.+ ..++.++....
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------- 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDVL---------- 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSCC----------
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCccc----------
Confidence 999999999999999999999999999999999999998765 4443332222 333 45556554321
Q ss_pred ccceeHHHHHHcCCCCCC-C---CCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 019388 196 VSCFSWEEFLQLGTLDCE-L---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (341)
.++..+.+.+........ + ....++++++++|||||||.||||+++|.+++..+......+ ++..+|++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 135677777665422111 1 245789999999999999999999999999988877655544 7888999999
Q ss_pred ecChHHHHHHHH-HHHHHhcCceEEEec---CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 272 FLPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 272 ~~pl~h~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..|++|..+++. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.|++.
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 333 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE 333 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc
Confidence 999999999886 788999999999874 3999999999999999999999999999864
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=298.97 Aligned_cols=263 Identities=15% Similarity=0.175 Sum_probs=208.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++||++|+++....++..+.++++||+||.++++++|++|.++|+ +||+|+++++|++++++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~ 99 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF 99 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence 346799999999999999999999872111334556899999999999999999999996 9999999999999999999
Q ss_pred HHHHhcCCeEEeecC---CCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCC-cccEEEEeccCCchhhHHhhhhC
Q 019388 120 EACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL-YLKTIVSFANVSSSQKKEAEELG 195 (341)
Q Consensus 120 lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ 195 (341)
|||+++|++++|+++ .++.+++.+++++++++++|++.+....+......... ....++.++....
T Consensus 100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 169 (480)
T 3t5a_A 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDL---------- 169 (480)
T ss_dssp HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSCT----------
T ss_pred HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccccc----------
Confidence 999999999999999 78899999999999999999999887766554432211 1123333332110
Q ss_pred ccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCC------CcEE
Q 019388 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE------EDTY 269 (341)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~~ 269 (341)
............++++++|+|||||||.||||++||+++.+++......+ ++.. +|++
T Consensus 170 -----------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 170 -----------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp -----------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred -----------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 01112233455778999999999999999999999999999998877776 5555 8999
Q ss_pred EEecChHHHHHHHH-HHHHHhcCceEEEec-----CCHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWR-----GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 270 l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~-----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
++.+|++|.+|+.. ++.++..|+++++.+ +++..+++.|+++++| +.++|+++..++...
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~ 299 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARR 299 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHH
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhh
Confidence 99999999999876 888999999999985 2889999999999999 899999999888653
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=297.11 Aligned_cols=268 Identities=14% Similarity=0.207 Sum_probs=221.7
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCCh
Q 019388 40 AGLESPWQFFCDSAKR-----IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCP 113 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~-----~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~~~~V~i~~~n~~ 113 (341)
....++.++|++.+++ +|+++|+.+. ++ .+..+++||+||.++++++|++|.+. |+++||+|+++++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456778999999998 9999999875 32 23457899999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhh
Q 019388 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (341)
Q Consensus 114 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 193 (341)
++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+..... ..+.++.++.++....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence 9999999999999999999999999999999999999999999987766544332 2245556666654211
Q ss_pred hCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHH--HHhhhhhhhhhccccCCCCcEEEE
Q 019388 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVLSVDQMFVVTGKVCSEEDTYFS 271 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~--~~~~~~~~~~~~~~~~~~~d~~l~ 271 (341)
.+...+++++.............++++++|+|||||||.||||+++|+ ++. ..... ..+ ++..+|++++
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~~ 252 (570)
T 3c5e_A 182 --DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMWT 252 (570)
T ss_dssp --TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEEE
T ss_pred --cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEEE
Confidence 013456666654422223345578999999999999999999999999 544 33333 444 7889999999
Q ss_pred ecChHHHHHHHH-HHHHHhcCceEEEec---CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 272 FLPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 272 ~~pl~h~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
.+|++|.+|+.. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.|++.
T Consensus 253 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 314 (570)
T 3c5e_A 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ 314 (570)
T ss_dssp CCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS
T ss_pred cCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc
Confidence 999999999985 888999999999985 3999999999999999999999999999864
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=302.59 Aligned_cols=251 Identities=16% Similarity=0.160 Sum_probs=209.0
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHH
Q 019388 38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117 (341)
Q Consensus 38 ~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~ 117 (341)
......+++++|.+.++++||++|+++. + +++||+||.++++++|++|.++|+++||+|+++++|++++++
T Consensus 70 ~~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 140 (570)
T 4gr5_A 70 RAPAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVV 140 (570)
T ss_dssp CCCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred cCCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 3345689999999999999999999864 3 689999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcc
Q 019388 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
++|||+++|++++|+++.++.+++.+++++++++++|++......+ .....++..+...
T Consensus 141 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~------------- 199 (570)
T 4gr5_A 141 ALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA------------- 199 (570)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC----------------
T ss_pred HHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc-------------
Confidence 9999999999999999999999999999999999999998654322 1122222211110
Q ss_pred ceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 019388 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (341)
.............++++++++|||||||.||||++||+++.+.... ...+ ++..+|++++.+|++|
T Consensus 200 --------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 200 --------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTS
T ss_pred --------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccH
Confidence 0011122234457899999999999999999999999999876655 3333 7888999999999999
Q ss_pred HHHHHHHHHHHhcCceEEEecC---CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 278 IYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 278 ~~g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
..+...++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|++....
T Consensus 266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 323 (570)
T 4gr5_A 266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE 323 (570)
T ss_dssp STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh
Confidence 8887778889999999999863 899999999999999999999999999876543
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=297.93 Aligned_cols=266 Identities=18% Similarity=0.264 Sum_probs=215.5
Q ss_pred CCHHH-HHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 43 ESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 43 ~tl~~-~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.++.+ ++.+.++++ +++|+++. ++. +++||+||.++++++|+.|.++|+++||+|+++++|++++++++||
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la 96 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIA 96 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHH
T ss_pred CcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Confidence 58999 899999999 99999863 222 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++.+..+.+...... .+....++.++..... .+...|
T Consensus 97 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~ 166 (548)
T 2d1s_A 97 GLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVILDSKVDY---------RGYQCL 166 (548)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHH-STTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcC-CCCCCEEEEeCCcccc---------cccccH
Confidence 999999999999999999999999999999999999877655443221 1224456665532110 012346
Q ss_pred HHHHHcCCCC-CCCCCCC-----C-CCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 019388 202 EEFLQLGTLD-CELPPKK-----K-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274 (341)
Q Consensus 202 ~~~~~~~~~~-~~~~~~~-----~-~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (341)
+++....... .+..... + +++++++|||||||.||||++||+++.+.+......+. ..++..+|++++.+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p 244 (548)
T 2d1s_A 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVVP 244 (548)
T ss_dssp HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECSC
T ss_pred HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEecc
Confidence 6665543111 1111122 3 89999999999999999999999999998887655410 126788999999999
Q ss_pred hHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 275 LAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 275 l~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
++|.+|+.. ++.++ .|+++++.+. +++.+++.|+++++|+++++|++++.|++.
T Consensus 245 ~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 300 (548)
T 2d1s_A 245 FHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300 (548)
T ss_dssp TTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC
Confidence 999999987 56667 9999999875 999999999999999999999999999864
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=295.21 Aligned_cols=267 Identities=19% Similarity=0.227 Sum_probs=209.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 39 ~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
|....++.++|.+.++ +|+++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|+++++++
T Consensus 20 p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 89 (529)
T 2v7b_A 20 PALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVA 89 (529)
T ss_dssp --CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHH
T ss_pred ccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 3455679999999999 9999999864 2 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcc-cEEEEeccCCchhhHHhhhhCcc
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
+|||+++|++++|+++.++.+++.+++++++++++|++.+....+....... ... ..++.++..... ...
T Consensus 90 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~ 160 (529)
T 2v7b_A 90 FLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRL 160 (529)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------C
T ss_pred HHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------ccc
Confidence 9999999999999999999999999999999999999987665544332211 223 344444432110 001
Q ss_pred ceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHH-HHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
...++++..............++++++++|||||||.||||++||+++ ..........+ ++..+|++++.+|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 161 APLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLF 235 (529)
T ss_dssp CCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTT
T ss_pred ccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHH
Confidence 235666655332222334557899999999999999999999999999 66655544444 788999999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEec--CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 277 HIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 277 h~~g~~~-~l~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
|.+|+.. ++.++..|+++++.+ +++..+++.|+++++|+++++|+++..+++.
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS 291 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhC
Confidence 9999986 678999999999873 3999999999999999999999999998764
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=298.55 Aligned_cols=264 Identities=14% Similarity=0.147 Sum_probs=221.4
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|.+.++ ||++|+++. + +++||+||.++++++|++|.++|+++|++|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh----hHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
||+++|++++|+++.++.+++.++++++++++++++..... ............+..+...+...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 161 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSG------------ 161 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCS------------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccc------------
Confidence 99999999999999999999999999999999999987541 11111111223444455544332
Q ss_pred cceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
...+.+...............++++++++|||||||.||||+++|+++.+.+......+ ++..+|++++.+|++
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 235 (617)
T 3rg2_A 162 -EHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA 235 (617)
T ss_dssp -TTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred -ccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence 12344444444333334556789999999999999999999999999999999988877 889999999999999
Q ss_pred HHHHHHH--HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 277 h~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++.....
T Consensus 236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 295 (617)
T 3rg2_A 236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEG 295 (617)
T ss_dssp SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTT
T ss_pred hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcc
Confidence 9999884 8889999999999876 9999999999999999999999999999876643
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=301.87 Aligned_cols=264 Identities=19% Similarity=0.179 Sum_probs=215.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
....++.++|.+.++++||++|+++. ++ +..+++||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45689999999999999999999876 42 23479999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCC---ChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCc
Q 019388 120 EACNSQAITYVPLYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 196 (341)
|||+++|++++|+++.. ..+++.++++.+++++++++.+....+........+....+..+..
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 148 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIAL-------------- 148 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEG--------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeec--------------
Confidence 99999999999999987 4578999999999999999987655443322111111111111111
Q ss_pred cceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
+.+..............++++++++|||||||.||||++||+++.+++......+ ++..+|++++.+|++
T Consensus 149 -----~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 149 -----ESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH 218 (590)
T ss_dssp -----GGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred -----hhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence 0000000111223456789999999999999999999999999999999988877 889999999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 277 HIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 277 h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++.+..
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 280 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE 280 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh
Confidence 9999987 8889999999999863 789999999999999999999999999886543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=314.87 Aligned_cols=290 Identities=19% Similarity=0.220 Sum_probs=227.8
Q ss_pred CCCcceeccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCC
Q 019388 21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (341)
Q Consensus 21 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~ 100 (341)
..+.+|++..+...+| ...+++++|.+.++++||++|+++. ++. +++||+||.++++++|++|.++|++
T Consensus 43 ~~~~~~~~~~~~~~~p----~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~ 111 (979)
T 3tsy_A 43 NSDVIFRSKLPDIYIP----NHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVN 111 (979)
T ss_dssp --CCCBCCSSCCCCCC----TTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCceeecCCCCCCCC----CCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 3344555554433333 3489999999999999999999875 322 6899999999999999999999999
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEe
Q 019388 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (341)
Q Consensus 101 ~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (341)
+||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++||++.+..+.+....... ...++.+
T Consensus 112 ~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~ 188 (979)
T 3tsy_A 112 QNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---GVVIVCI 188 (979)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---CCEEEEC
T ss_pred CcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---CceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999998765544432211 2234555
Q ss_pred ccCCchhhHHhhhhCccceeHHHHHHcCCC---CCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhh
Q 019388 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~ 257 (341)
+..... ........+.++...... ..+.....++++++|+|||||||.||||+++|+++++.+.......
T Consensus 189 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~- 261 (979)
T 3tsy_A 189 DDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE- 261 (979)
T ss_dssp CCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSS-
T ss_pred CCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhh-
Confidence 432110 001123344444332211 2233456789999999999999999999999999998877654321
Q ss_pred hccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 258 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 258 ~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
....++..+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++...
T Consensus 262 ~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 337 (979)
T 3tsy_A 262 NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337 (979)
T ss_dssp SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence 01126778999999999999999976 7889999999999876 99999999999999999999999999987654
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=296.25 Aligned_cols=247 Identities=16% Similarity=0.186 Sum_probs=205.4
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~ 122 (341)
.++.++|++.++++|+++|+++. + +++||+||.++++++|++|.++|+++|++|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR----D-----AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC----C-----ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999875 3 68999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHH
Q 019388 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (341)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 202 (341)
+++|++++|+++.++.+++.+++++++++++|++....... ....++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~---------~~~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD---------LPVRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC---------CSSEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc---------cccceechh------------------hhh
Confidence 99999999999999999999999999999999986432110 001111111 122
Q ss_pred HHHHcC--CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 203 EFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 203 ~~~~~~--~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
...... ....+.....++++++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 222111 122233455789999999999999999999999999999999887777 8899999999999999999
Q ss_pred HHHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++..
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 253 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA 253 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc
Confidence 9889999999999999873 8899999999999999999999999887543
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=293.81 Aligned_cols=248 Identities=19% Similarity=0.244 Sum_probs=204.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++|+++|+++. + +++||+||.++++++|+.|.++|+++||+|+++++|++++++++||
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 108 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA 108 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++.+....+.... ....+..++...
T Consensus 109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------- 166 (563)
T 1amu_A 109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT----------------- 166 (563)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST-----------------
T ss_pred HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh-----------------
Confidence 9999999999999999999999999999999999987554332211 111233332210
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
+ .............++++++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.+++
T Consensus 167 --~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~ 238 (563)
T 1amu_A 167 --I-KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASV 238 (563)
T ss_dssp --T-TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHH
T ss_pred --h-ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHH
Confidence 0 000111112344678999999999999999999999999998888877766 88899999999999999999
Q ss_pred HHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
..++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..|.+
T Consensus 239 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 289 (563)
T 1amu_A 239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP 289 (563)
T ss_dssp HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT
T ss_pred HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh
Confidence 888889999999999863 88999999999999999999999987753
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=297.88 Aligned_cols=243 Identities=16% Similarity=0.134 Sum_probs=205.2
Q ss_pred CCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHH
Q 019388 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (341)
Q Consensus 41 ~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~l 120 (341)
...++.++|++.++++||++|+.+. + +++||+||.++++++|++|.++|+++|++|+++++|++++++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4579999999999999999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCcccee
Q 019388 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (341)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 200 (341)
||+++|++++|+++.++.+++.++++++++++++++....... ...... .+...
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~~~~~----------------- 149 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-PVRHL----------------- 149 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-EGGGC-----------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-eeccC-----------------
Confidence 9999999999999999999999999999999999776533211 011111 11100
Q ss_pred HHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
.............++++++++|||||||.||||+++|+++.+.+.. ...+ ++..+|++++..|++|.++
T Consensus 150 -----~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~ 218 (620)
T 4dg8_A 150 -----PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA 218 (620)
T ss_dssp -----CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred -----CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence 0001112223456899999999999999999999999999887765 4444 7889999999999999999
Q ss_pred HHHHHHHHhcCceEEEec---CCHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..++.++..|+++++.+ +++..+++.|+++++|++.++|++++.|++.
T Consensus 219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 270 (620)
T 4dg8_A 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL 270 (620)
T ss_dssp HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc
Confidence 988999999999999974 2999999999999999999999999999864
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=291.85 Aligned_cols=265 Identities=18% Similarity=0.198 Sum_probs=204.9
Q ss_pred CHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHH
Q 019388 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (341)
Q Consensus 44 tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 123 (341)
|+.++|.+.++++||++|+++. + +++||+||.++++++|++|.++ +|++|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999864 2 5899999999999999999986 89999999999999999999999
Q ss_pred hcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc-eeHH
Q 019388 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC-FSWE 202 (341)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ 202 (341)
++|++++|+++.++.+++.+++++++++++|++.+.......... ...+..+......... ......... ...+
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccchh
Confidence 999999999999999999999999999999999876543321110 0111111110000000 000000000 0001
Q ss_pred HHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 203 EFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 203 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
...... ..........++++++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 111100 001122345789999999999999999999999999999999888777 88999999999999999999
Q ss_pred HHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
..++.++..|+++++.+. +++.+++.|+++++|++.++|++++.|++..
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 269 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQG 269 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHT
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcC
Confidence 988999999999999876 9999999999999999999999999998754
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=289.74 Aligned_cols=255 Identities=20% Similarity=0.313 Sum_probs=207.4
Q ss_pred HHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHHhcC
Q 019388 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126 (341)
Q Consensus 47 ~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 126 (341)
++|.+.++++|+++++..... ++ +++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 478889999999999885310 22 589999999999999999999999999999999999999999999999999
Q ss_pred CeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeHHHHHH
Q 019388 127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ 206 (341)
Q Consensus 127 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (341)
++++|+++.++.+++.+++++++++++|++.+....+....... ...+..++.... ..+.....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV---GATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH---TCEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc---CceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987554433322211 113334332211 11222222
Q ss_pred cCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HH
Q 019388 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET 285 (341)
Q Consensus 207 ~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l 285 (341)
............++++++++|||||||.||||+++|+++.+++......+ +++.+|++++.+|++|.+|+.. ++
T Consensus 142 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~ 216 (503)
T 4fuq_A 142 GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASN 216 (503)
T ss_dssp TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHH
Confidence 22222233456789999999999999999999999999999999988877 8999999999999999999876 78
Q ss_pred HHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 286 ~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
.+++.|+++++.+. +++.+++.++ ++|+++++|+++..|++..
T Consensus 217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~ 260 (503)
T 4fuq_A 217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSP 260 (503)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCT
T ss_pred HHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCC
Confidence 88999999999876 9999999998 8999999999999998643
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=288.57 Aligned_cols=245 Identities=18% Similarity=0.242 Sum_probs=209.7
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCChHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
.++.++|.+.++++|+++|+.+. + +++||+||+++++++|++|.+. |.++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999864 3 6899999999999999999875 888999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++........ . ... ....+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~---~---~~~----------------------~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAV---G---QQI----------------------QTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCC---C---CSS----------------------CEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhc---c---ccc----------------------ceecH
Confidence 9999999999999999999999999999999999765321110 0 000 12344
Q ss_pred HHHHHcC-CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 019388 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (341)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (341)
+++.... ..........++++++++|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 4454433 222223345678999999999999999999999999999999887777 8889999999999999999
Q ss_pred HHHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.+++.
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 251 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD 251 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc
Confidence 9889999999999999863 889999999999999999999999998764
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=285.27 Aligned_cols=249 Identities=16% Similarity=0.145 Sum_probs=204.6
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|++.++++|+++|+.+. + +++||+||.++++++|++|.++|+++|++|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++.+....+. .. .++.+. .+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~~~~~~------------------~~ 126 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-SLVSLS------------------EI 126 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-EEEEHH------------------HH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-cccchh------------------hh
Confidence 9999999999999999999999999999999999886532211 11 111111 11
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
.................++++++++|||||||.||||++||+++.+.+....... ..++..++++++..|++|..++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 203 (521)
T 3l8c_A 127 ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFDLSV 203 (521)
T ss_dssp HHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSGGGH
T ss_pred hhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHHHHH
Confidence 1111111222233456789999999999999999999999999998877655431 1267889999999999999998
Q ss_pred HHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..++.++..|+++++.+. ++..+++.|.++++|++.++|+++..++..
T Consensus 204 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 255 (521)
T 3l8c_A 204 MYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS 255 (521)
T ss_dssp HHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS
T ss_pred HHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh
Confidence 888899999999999863 889999999999999999999999888754
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=279.28 Aligned_cols=263 Identities=16% Similarity=0.107 Sum_probs=205.1
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceeeeeccCC----CCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH
Q 019388 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDG----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE 114 (341)
Q Consensus 39 ~~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~----~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~ 114 (341)
.....++.++|++.++++||++|+++. ++ ..+..+++||+||.++++++|+.|.+.|+ +||+|+++++|+++
T Consensus 16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 16 YTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp --CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH
T ss_pred ecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH
Confidence 355688999999999999999999875 32 22345789999999999999999999999 79999999999999
Q ss_pred HHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhh
Q 019388 115 WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194 (341)
Q Consensus 115 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 194 (341)
+++++|||+++|++++|+++.++.+++.+++++++++++|++++...... ......++..+
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~------------- 152 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTK------------- 152 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETT-------------
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeeccc-------------
Confidence 99999999999999999999999999999999999999999876543221 01112222211
Q ss_pred CccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhh---hccccCCCCcEEEE
Q 019388 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV---VTGKVCSEEDTYFS 271 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~ 271 (341)
...+.+...............++++++++|||||||.||||++||+++.+.+......+. .....+...+++++
T Consensus 153 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (562)
T 3ite_A 153 ---NQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229 (562)
T ss_dssp ---CHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred ---chhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence 112223333222222334456788999999999999999999999999988877655431 11125778899999
Q ss_pred ecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 272 FLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 272 ~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
..|++|..++..++.++..|+++++.+. .++.+++.++++++|++.++|++++.+.
T Consensus 230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~ 287 (562)
T 3ite_A 230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTG 287 (562)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHT
T ss_pred ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcc
Confidence 9999999998888889999999998764 4678899999999999999999887653
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=300.01 Aligned_cols=248 Identities=17% Similarity=0.236 Sum_probs=208.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..++.++|.+.++++||++|+.+. + +++||+||.++++++|+.|.++|+++|++|+++++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999865 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|++|.++.+++.++++++++++++++.+....+... +.....+.+++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------------- 592 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQTR---------------- 592 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGGG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEeccccc----------------
Confidence 999999999999999999999999999999999998754432111 12223333332100
Q ss_pred HHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 019388 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (341)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (341)
. . .....+.....++++++++|||||||+||||+++|+++.+. ......+ ++..+|++++..|++|..+.
T Consensus 593 --~-~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 662 (1304)
T 2vsq_A 593 --F-E-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAFT 662 (1304)
T ss_dssp --G-G-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHHH
T ss_pred --c-c-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHHH
Confidence 0 0 11112233457899999999999999999999999999876 3334444 78899999999999999998
Q ss_pred HHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.|.+.
T Consensus 663 ~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~ 714 (1304)
T 2vsq_A 663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA 714 (1304)
T ss_dssp HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence 889999999999999863 889999999999999999999999999764
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=273.49 Aligned_cols=240 Identities=20% Similarity=0.251 Sum_probs=196.4
Q ss_pred CCCCCHHHHHHHHHHhCCC-CcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~ 118 (341)
.++.++.+.|.+.++++|+ ++|+.+. + +++||+||.++++++|..|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4567888999999999987 9999864 3 68999999999999998874 478999999999999999
Q ss_pred HHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccc
Q 019388 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (341)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 198 (341)
++||+++|++++|+++.++.+++.+++++++++++|++.+.... .....+.. +.++..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~-~~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALER-VDVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEE-EECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhccccc-cccccc---------------
Confidence 99999999999999999999999999999999999998753210 00011111 111111
Q ss_pred eeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 019388 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (341)
.....+.....++++++++|||||||.||||+++|+++.+.+......+ ++..+|++++.+|++|.
T Consensus 143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 208 (505)
T 3nyq_A 143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV 208 (505)
T ss_dssp ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence 0111223445678999999999999999999999999999999988877 88999999999999999
Q ss_pred HHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 279 YDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 279 ~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..|++.+
T Consensus 209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~ 261 (505)
T 3nyq_A 209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETL 261 (505)
T ss_dssp HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhh
Confidence 99986 8899999999999875 999999999 889999999999999998743
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=163.68 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=96.0
Q ss_pred CCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEec
Q 019388 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (341)
Q Consensus 219 ~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~ 298 (341)
.+++++|+|||||||.||||++||+++.+++......+ +++++|++++.+|++|++|+..++.++..|+++++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47899999999999999999999999999999988887 8999999999999999999998889999999999886
Q ss_pred CCHHHHHHHhhhhcCcEEeccchHHHHHHHHHH
Q 019388 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTI 331 (341)
Q Consensus 299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (341)
. ....++.|+++++|++.++|++++.|++...
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~ 142 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA 142 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc
Confidence 4 2234678999999999999999999987543
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-16 Score=143.14 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=98.0
Q ss_pred CCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceE
Q 019388 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSI 294 (341)
Q Consensus 216 ~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~~ 294 (341)
...++++++++|||||||.||+|++||+++...+......+. ..+++.+|++++.+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR--AAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 446789999999999999999999999999877655433211 1278899999999998 6888877788899999999
Q ss_pred EEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 295 GFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
++.+. +++.+++.|+++++|+++++|+++..|++....
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~ 202 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIER 202 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHH
Confidence 98775 999999999999999999999999999987654
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-16 Score=143.45 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=97.3
Q ss_pred CCCC-CCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCce
Q 019388 216 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCS 293 (341)
Q Consensus 216 ~~~~-~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ 293 (341)
...+ +++++++|||||||.||+|++||+++.+.+......+. ..++..+|++++.+|++|..+... ++.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH--HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 88999999999999999999999999887766533221 127889999999999976666554 7888999999
Q ss_pred EEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 294 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 294 ~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
+++.+. ++..+++.|+++++|+++++|+++..|++.....
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 199 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEE 199 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHc
Confidence 998865 9999999999999999999999999999887654
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-16 Score=141.18 Aligned_cols=112 Identities=17% Similarity=0.152 Sum_probs=90.0
Q ss_pred CCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceEE
Q 019388 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG 295 (341)
Q Consensus 217 ~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~~v 295 (341)
..++++++++|||||||.||+|+++|+++...+......+ ...++..+|++++.+|+ +|.+|+...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGY--QHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTT--TTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhH--HhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 4678899999999999999999999999999888543221 11277889999999999 99999988777788999444
Q ss_pred EecCCHH-----------------------HHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 296 FWRGDVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
...+++. .+++.|+++++|++.++|+++..|++..
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~ 223 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRP 223 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhh
Confidence 3344776 7888999999999999999999998764
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=141.60 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=97.5
Q ss_pred CCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceE
Q 019388 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSI 294 (341)
Q Consensus 216 ~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~~ 294 (341)
...++++++++|||||||.||+|++||+++...+......+. ..++..+|++++.+|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR--AAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 346788999999999999999999999999877665443111 1278899999999999 5777777788889999999
Q ss_pred EEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHH
Q 019388 295 GFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTIC 332 (341)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 332 (341)
++.+. +++.+++.|+++++|+++++|+++..|++...+
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~ 204 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVR 204 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHH
Confidence 98875 999999999999999999999999999987654
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.82 Score=41.50 Aligned_cols=124 Identities=17% Similarity=0.091 Sum_probs=87.4
Q ss_pred CCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--hHHHHHHHHHHhcCCeEEee
Q 019388 57 PNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (341)
Q Consensus 57 p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l 132 (341)
++..+.+.. ..|..| ...-+|.+.+...+..++..+...|+.+++++....+.+ ...+...++++..|+.+++.
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 455554443 134444 346789999998888888888788999999999988753 34455678889999998877
Q ss_pred cCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcc-----cCCcccEEEEeccC
Q 019388 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 183 (341)
.. ...+.+...+++.++.+++........+.+.... ....++.+++-+..
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 65 4788999999999999999888766655443211 12456666655544
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.84 Score=41.51 Aligned_cols=124 Identities=17% Similarity=0.065 Sum_probs=87.3
Q ss_pred CCCcceeeeeccCCCCcc--eEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--hHHHHHHHHHHhcCCeEEee
Q 019388 57 PNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (341)
Q Consensus 57 p~~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l 132 (341)
++..+.+.. ..|..|. ...+|.+.+...+..++..+...|+.+++++....+-+ ...+...++++..|+.+++.
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 345554433 1444443 45789999998888888888788999999999988753 34455678888999998887
Q ss_pred cCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcc-----cCCcccEEEEeccC
Q 019388 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 183 (341)
.. ...+.+...+++.++.+++........+.+.... ....++.+++-++.
T Consensus 169 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 169 SG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 65 4788999999999999999888766555443211 12456666655544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.77 Score=41.66 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=87.9
Q ss_pred CCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--hHHHHHHHHHHhcCCeEEeec
Q 019388 58 NNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPLY 133 (341)
Q Consensus 58 ~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~ 133 (341)
+.++.+.. ..|..| ....+|.+.+...+..++..+...|+.+++++....+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 44454443 134444 346789999999888888888888999999999988753 444556788899999988775
Q ss_pred CCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCccc-----CCcccEEEEeccC
Q 019388 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-----CLYLKTIVSFANV 183 (341)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~ 183 (341)
. ...+.+...+++.++.+++........+.+..... ...++.+++-++.
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 4 47788999999999999998887666554442211 2456666665544
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=90.90 E-value=3.9 Score=38.21 Aligned_cols=108 Identities=6% Similarity=-0.129 Sum_probs=80.8
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++....+.. .-..-.+|++.|...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~-~~~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFP-SEFPESMNFLEICEVTKKLASGISR--KGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCC-CSSCSEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCccc-ccccceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEcc
Confidence 356777765432211 1123578999999999998886643 378899999999987643 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+. ..+.+...+++.++..+...+.....+.+.
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~ 141 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKPV 141 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHH
Confidence 75 788899999999999999998877766543
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=90.63 E-value=2.3 Score=39.41 Aligned_cols=100 Identities=9% Similarity=-0.053 Sum_probs=79.0
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. .+-.+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLR--DGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEec
Confidence 467777764 23579999999999998887643 378899999999987643 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 329 (341)
+. ..+.+...+++.++..+...+.....+.+.
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 120 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV 120 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHHhh
Confidence 75 788899999999999999998877665544
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=90.60 E-value=4.5 Score=37.21 Aligned_cols=122 Identities=11% Similarity=-0.009 Sum_probs=85.2
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChH-HHHHHHHHHhcCCeEEee
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPL 132 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l 132 (341)
.++.++++.. ..|..| ....+|++.+...+...... .++.+++++....|-... .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4567776655 123333 44678999988776665543 478899999988876433 334467788889888876
Q ss_pred cCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccC
Q 019388 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (341)
+ ...++.+...+++.++.+++........+..........++.++.-++.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 5 5789999999999999999998887776665544333356666555444
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=90.48 E-value=1.3 Score=41.53 Aligned_cols=89 Identities=9% Similarity=0.002 Sum_probs=72.6
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
..+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..+. ..+.+...++..++.+
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 125 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKR--YGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEeEHHHHHHHHHHHHHHHHH--hCCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeE
Confidence 479999999999988887643 378899999999987644 23347889999999998765 8889999999999999
Q ss_pred EeccchHHHHHHHH
Q 019388 316 FSGVPRVYDRIYTG 329 (341)
Q Consensus 316 ~~~~P~~~~~l~~~ 329 (341)
++........+.+.
T Consensus 126 vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 126 VFVSKKGLQKILNV 139 (550)
T ss_dssp EEECGGGHHHHHHH
T ss_pred EEEcHHHHHHHHHH
Confidence 99998887766543
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=2.9 Score=38.96 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=79.3
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.++++... + +-.+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 35 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGA---N----GDVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETT---T----CCEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECC---C----CCEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEecc
Confidence 46777765422 2 2468999999999988886643 378899999999987643 333488899999998888
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+. ..+.+...++..++..+...+.....+.+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~ 139 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKDFA 139 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHH
Confidence 65 8889999999999999999888777665443
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=89.61 E-value=4.6 Score=37.68 Aligned_cols=102 Identities=4% Similarity=-0.188 Sum_probs=77.4
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.++++.... -....+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 31 ~p~~~a~~~~~~-----~~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHT-----GEVHRTTYAEVYQRARRLMGGLRA--LGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTT-----SCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecC-----CCCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEec
Confidence 356667654321 134579999999999988886633 378899999999987643 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
+. ..+.+...+++.++..+...+.....+.
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 75 7888999999999999999888765543
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=88.35 E-value=3.2 Score=38.41 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=69.4
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
-.+|++.|...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..+. ..+.+...+++.++..
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVA--RGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 468999999999988886643 378899999999987733 23348889999999998875 7888999999999999
Q ss_pred EeccchHHHHH
Q 019388 316 FSGVPRVYDRI 326 (341)
Q Consensus 316 ~~~~P~~~~~l 326 (341)
+...+.....+
T Consensus 104 vi~~~~~~~~~ 114 (503)
T 4fuq_A 104 VVCDPSKRDGI 114 (503)
T ss_dssp EEECGGGTTTT
T ss_pred EEECchhhHHH
Confidence 99887765443
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=87.65 E-value=6.5 Score=36.40 Aligned_cols=100 Identities=7% Similarity=-0.135 Sum_probs=76.9
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.. -+...+|++.|...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 29 ~p~~~A~~~~-------~~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 29 SPRLQAYVEP-------STDVRMTYAQMNALANRCADVLTA--LGIAKGDRVALLMPNSVE-FCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp STTSEEEEEG-------GGTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEeC-------CcCceeeHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEcCCCHH-HHHHHHHHHHhCcEEEec
Confidence 4567777642 123579999999999988886643 378899999999987633 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
+. ..+.+...+++.++.++...+.....+.
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSAPVID 130 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchHHHHH
Confidence 75 7888999999999999998877665443
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=87.27 E-value=6.6 Score=36.84 Aligned_cols=95 Identities=8% Similarity=0.012 Sum_probs=73.5
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. .+-.+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 52 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVC---------ENEQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEe---------CCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEe
Confidence 456677653 12468999999999888876633 378899999999887643 233488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYD 324 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~ 324 (341)
+. ..+.+...+++.++..++..+....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 75 7788999999999999998876554
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=87.21 E-value=6.5 Score=36.22 Aligned_cols=99 Identities=16% Similarity=0.029 Sum_probs=73.7
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++... .+..+|++.+...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..
T Consensus 15 ~p~~~a~~~~~-------~~~~~Ty~el~~~~~~~A~~L~~--~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVPA-------RGLRLTHAELRARVEAVAARLHA--DGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEETT-------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEcC-------CCceeEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEec
Confidence 45667765421 23579999999999988886643 3788999999999876443 33488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEec--cchHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSG--VPRVYDRI 326 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~--~P~~~~~l 326 (341)
+. ..+.+...+++.+++.+.. .+.....+
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 65 7888999999999999988 66655444
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=87.15 E-value=7.9 Score=36.38 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=77.4
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccc-cCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEE
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK-VCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 296 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~ 296 (341)
.++.+|++.... .| ....+|++.+...+..++..+. .. ++.++|++...+|-+..+ +..+++++..|+..+.
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~--~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vp 128 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLS--GACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMP 128 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHH--TTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHH--HccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEe
Confidence 456777765421 12 2367999999999988887652 23 678999999999876432 3347889999999888
Q ss_pred ecC--CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 297 WRG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 297 ~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
.+. ..+.+...+++.++..++..+.....+.
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 765 7888999999999999998887766543
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=86.62 E-value=7.3 Score=35.45 Aligned_cols=107 Identities=10% Similarity=0.008 Sum_probs=78.5
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.........-....+|++.+...+..++..+... +. ++|++...++-+..+ +..+++++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 467788765542211111347899999999999998877433 44 889999888876442 33488899999998887
Q ss_pred cC-----CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 298 RG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
+. ..+.+...+++.++..+...+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 53 46788899999999999999887776654
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=86.55 E-value=4.4 Score=37.63 Aligned_cols=99 Identities=4% Similarity=-0.111 Sum_probs=76.6
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.. +..+|+..+...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRT--LGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEec
Confidence 4566776521 2468999999999988886633 3788999999999876442 33478899999999887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
+. ..+.+...+++.++..+...+.....+.+
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 136 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQ 136 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHH
Confidence 65 78899999999999999998887665543
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=86.53 E-value=6.3 Score=37.91 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=75.9
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.... ..| ....+|++.|...+..++..+.. ..++.++|++...+|.+-- .+..+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~-~~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTY-SMGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHH-TSCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEee
Confidence 457778765422 122 34579999999999988886631 2378899999999998744 233488899999988887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. .++.+...+++.++.+++.....
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 64 88999999999999999887654
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=85.87 E-value=14 Score=34.41 Aligned_cols=122 Identities=8% Similarity=-0.090 Sum_probs=83.5
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHH---HHHHHHhcCCeEE
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII---AMEACNSQAITYV 130 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~---~~lA~~~~G~~~v 130 (341)
.|+.++++.+ ..|..| ....+|.+.+...+......+ ++.+++++....|-...+-. .+++.+..|+.++
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHHhh---CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4566776655 123333 456899999887776655443 67899999888887654433 4788889998888
Q ss_pred eecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhC---cccCCcccEEEEeccC
Q 019388 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (341)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 183 (341)
..+ ...++.+...+++.++.+++........+.+.. ......++.+++-+..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 664 567899999999999999998887665554332 1233566666655544
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=85.63 E-value=7.7 Score=36.57 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=75.8
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.... .| ....+|++.|...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+-.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~--~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVK--HGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeC
Confidence 567788876432 12 34679999999999988886643 3788999999999876442 33488899999999887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. ..+.+...+++.++..+...+..
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~~ 168 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAED 168 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESST
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecch
Confidence 65 88899999999999999886654
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=5.1 Score=37.47 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=70.8
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
..+|++.+...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..+. ..+.+...+++.++..
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e~-~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 127 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQN--YGLVVDGRIALCSENCEEF-FIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSE
T ss_pred CEeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCchhH-HHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeE
Confidence 468999999999988886643 3788999999998876442 2347888999999888875 7889999999999999
Q ss_pred EeccchHHHHHHH
Q 019388 316 FSGVPRVYDRIYT 328 (341)
Q Consensus 316 ~~~~P~~~~~l~~ 328 (341)
++..+.....+.+
T Consensus 128 vi~~~~~~~~~~~ 140 (548)
T 2d1s_A 128 VFSSKKGLDKVIT 140 (548)
T ss_dssp EEECTTTHHHHHH
T ss_pred EEEcHHHHHHHHH
Confidence 9998887665543
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=83.91 E-value=8.6 Score=36.08 Aligned_cols=93 Identities=9% Similarity=0.007 Sum_probs=72.3
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. .+-.+|++.+...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..
T Consensus 88 ~pd~~A~~~---------~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 88 APDAVALLH---------EADELTYGALNERANRLAHRLVG--LGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTML 155 (570)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEC---------CCCcEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEc
Confidence 456777653 12369999999999988886643 3788999999999876443 33488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
+. ..+.+...+++.++..+......
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchh
Confidence 75 78889999999999998876543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=9 Score=36.71 Aligned_cols=99 Identities=9% Similarity=0.079 Sum_probs=74.9
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++... ..+| ..-.+|++.|...+..++..+.. .++.++|++...+|.+.-+ +..+++++..|+..+..
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~--~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLD--LGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEec
Confidence 35677776432 2122 34579999999999988886643 3788999999999987443 33488899999998887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. .++.+...+++.++.+++.....
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 189 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITADEG 189 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESEE
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence 64 88999999999999999886543
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=83.22 E-value=8.7 Score=35.77 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=72.4
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++. .+-.+|++.|...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 43 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 43 HPHSLAIIC---------GERQLSYIELDRLSTNLATRLAE--KGLGKGDTALVQLPNVAE-FYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEc---------CCCceeHHHHHHHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHHHHHHHHhCcEEecC
Confidence 467777763 24579999999999988886643 378899999999887633 233488899999988877
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (341)
.. ..+.+...+++.++..+...+..
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 137 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQH 137 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTS
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEcccc
Confidence 64 78889999999999999877654
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=6.4 Score=34.51 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=77.0
Q ss_pred CCCcceeeeeccCCCCcc--eEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--hHHHHHHHHHHhcCCeEEee
Q 019388 57 PNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (341)
Q Consensus 57 p~~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l 132 (341)
++.++.+.. ..|..|. ...+|.+.+...+..++..+...|+.+++++..+.|-+ .......++++..|+.+++.
T Consensus 90 ~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 90 ADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp TTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred ccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 455555444 1344443 35678899988887777777778999999999998862 23344455568889866654
Q ss_pred cCCCChh-----------------------HHHHHhhcCceeEEEEcCCChhhHHhhCc---ccCCcccEEEEeccC
Q 019388 133 YDTLGAN-----------------------AVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 183 (341)
. +.+. .+...+++.++.+++........+.+... .....++.+++-+..
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 242 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTE 242 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSC
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCcc
Confidence 3 3333 66678999999999988866554433211 112345555555544
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=82.44 E-value=5.7 Score=40.15 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=77.6
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.-. + +..+|++.+...+..++..+.. .++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 74 ~pd~~Al~~~~---~----~~~~TY~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---T----GHVYTYSDVHVISRQIAANFHK--LGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---T----CCEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---C----CcEEEHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEee
Confidence 56778776422 2 2568999999999988886633 378899999999997733 333488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
+. .++.+...+++.++.++...+.....+.+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 176 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKIKP 176 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHH
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHH
Confidence 65 88889999999999999988876554433
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=81.42 E-value=14 Score=34.73 Aligned_cols=102 Identities=8% Similarity=0.012 Sum_probs=76.5
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.... -..-.+|++.|...+..++..+... ++.++|++...+|-+.. .+..+++++..|+..+..
T Consensus 24 ~p~~~a~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~--gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 24 SPNKKSCTFLNK-----ELEETMTYEQLDQHAKAIAATLQAE--GAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp CTTSEEEEEEET-----TEEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEEEcC-----CeeEEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEEEEe
Confidence 467777765431 1345799999999999888866433 78899999999987644 333478899999999887
Q ss_pred cC-----CHHHHHHHhhhhcCcEEeccchHHHHHH
Q 019388 298 RG-----DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (341)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 327 (341)
+. ..+.+...++..++..+...+.....+.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 64 2356778889999999998887766654
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=80.98 E-value=13 Score=35.44 Aligned_cols=122 Identities=10% Similarity=0.063 Sum_probs=83.4
Q ss_pred CCCCcceeeeeccCCCCc--ceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHH-HHHHHHHHhcCCeEEee
Q 019388 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (341)
Q Consensus 56 ~p~~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l 132 (341)
.++.++++.+- .|..| ....+|++.+...+.. ....++.+++++....+-+... +..+++.+..|+..+..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 35777766551 34433 4467888887544322 2345788999999988775443 34467888888877765
Q ss_pred c-CCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccC
Q 019388 133 Y-DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183 (341)
Q Consensus 133 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (341)
+ ....++.+...+++.++.+++........+..........++.+++-++.
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 3 35678999999999999999988877766655444445667777666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 341 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 5e-39 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 4e-35 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-32 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 9e-27 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 3e-22 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 7e-21 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-20 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 144 bits (363), Expect = 5e-39
Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 18/267 (6%)
Query: 73 GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
++Y+E++ RF + + G+ GD IY PE +AM AC + +
Sbjct: 99 SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 158
Query: 133 YDTLGANAVEFIINHAEVSIAFVQE------NKIPSILSCLPRCCLYLKTIVSFANVSSS 186
+ AV I + + + IP + T V V
Sbjct: 159 FGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR 218
Query: 187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
+ + W + ++ + + + + I+YTSG+TG+PKGV+ T +
Sbjct: 219 TGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 278
Query: 247 AEVL-SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG----- 299
+ +F D Y+ + + + + G + + G
Sbjct: 279 VYAATTFKYVFDYH-----PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 333
Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRI 326
+ + + + + + P +
Sbjct: 334 TPARMCQVVDKHQVNILYTAPTAIRAL 360
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 133 bits (334), Expect = 4e-35
Identities = 45/261 (17%), Positives = 86/261 (32%), Gaps = 16/261 (6%)
Query: 78 LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
+TY+E+ + + + S GV GD +Y PE II + A + + ++
Sbjct: 91 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 150
Query: 137 GANAVEFIINHAEVSIAFVQEN-----KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
+N++ IN + + + K+ + + +
Sbjct: 151 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 210
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
W + P + ++YTSG+TG PKGV + + L
Sbjct: 211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 270
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-----DVRYLM 305
+ T +ED +F+ + I + + GC+ + G +
Sbjct: 271 TMRYTFDT----HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW 326
Query: 306 EDIQELKPTMFSGVPRVYDRI 326
+ I E K T F P +
Sbjct: 327 DIIDEHKVTQFYVAPTALRLL 347
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 124 bits (312), Expect = 2e-32
Identities = 61/283 (21%), Positives = 99/283 (34%), Gaps = 24/283 (8%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
W F +A ++ VS G TY EVY A R +R+ GV GDR
Sbjct: 14 WDFLERAAALFGRKEV-----VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRV 68
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
G N + A A L + +I+NHAE + N +P + +
Sbjct: 69 ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
+V + + + + + + + +
Sbjct: 129 IRGELKTVQHFVVMDEK--------------APEGYLAYEEALGEEADPVRVPERAACGM 174
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
YT+GTTG PKGVV +++A+V L+ + SE+D +P+ H+ +
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFHVNAWCLPY 231
Query: 286 HCIHKGCSIGF--WRGDVRYLMEDIQELKPTMFSGVPRVYDRI 326
G R D L+E T +GVP V+ +
Sbjct: 232 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL 274
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 108 bits (270), Expect = 9e-27
Identities = 41/262 (15%), Positives = 89/262 (33%), Gaps = 10/262 (3%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
+TY E ++ ++R AM+ G+N R + N ++ + + + P D
Sbjct: 48 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 107
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +N ++ ++ FV + + IL+ + + K I+ + +
Sbjct: 108 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF--- 164
Query: 198 CFSWEEFLQLGTLDCELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
L G + + P+ + I+ IM +SG+TG PKGV L ++
Sbjct: 165 ---VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 221
Query: 255 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPT 314
+ + + I + +R + + +Q+ K
Sbjct: 222 PIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQ 280
Query: 315 MFSGVPRVYDRIYTGTICQCTH 336
VP ++ T+
Sbjct: 281 SALLVPTLFSFFAKSTLIDKYD 302
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 95.3 bits (236), Expect = 3e-22
Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 43/281 (15%)
Query: 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
Q F + + PNN + V + + LTY E+ A + +G+ G
Sbjct: 27 QLFEEQVSKRPNNVAI----VCENEQ-----LTYHELNVKANQLARIFIEKGIGKDTLVG 77
Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
I + I + A YVP+ +++I++ ++ + Q++ + I
Sbjct: 78 IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI--- 134
Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
+ G E+ +++ P K T+++ ++
Sbjct: 135 ----------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVI 172
Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
YTSGTTG PKG +L ++ I ++F +E+D F ++
Sbjct: 173 YTSGTTGNPKGTMLEHKGIS-----NLKVFFENSLNVTEKDRIGQFASISFDASVWEMFM 227
Query: 287 CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVY 323
+ G S+ D + I + + T+ + P
Sbjct: 228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYV 268
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 91.2 bits (225), Expect = 7e-21
Identities = 37/296 (12%), Positives = 86/296 (29%), Gaps = 21/296 (7%)
Query: 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
D A + + + +Y+E+ A R + + G+ DR
Sbjct: 28 GDLLRDRAAKYGDRIAI----TCGNTH-----WSYRELDTRADRLAAGFQKLGIQQKDRV 78
Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
+ N E+ + A V + ++ + + AE + + +
Sbjct: 79 VVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR 138
Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
L R + + + + L T +LP K ++++ +
Sbjct: 139 SLARQVQSKLPTL-----------KNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187
Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVL-SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
+ G+TG K + T+ + + SV+ ++ V PL+ +
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVL 247
Query: 285 THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCTHKLTI 340
S D L+E + + + V+ + + +
Sbjct: 248 YAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 89.7 bits (221), Expect = 2e-20
Identities = 42/285 (14%), Positives = 95/285 (33%), Gaps = 27/285 (9%)
Query: 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
+++ + +A R P++ L + G LT+ E+ + + + G+ P
Sbjct: 1 MQTVNEMLRRAATRAPDHCAL--AVPARGL-----RLTHAELRARVEAVAARLHADGLRP 53
Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
R + N + +IA+ A + L L + + +I E++ A + +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-- 111
Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
+ + + + I V + E P ++
Sbjct: 112 QVADAIFQSGSGARIIFLGDLVRDGEPYSYGP-----------------PIEDPQREPAQ 154
Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
+ I YTSGTTG PK ++ +A + VL + + + + +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRI 326
++ + G + ++ +Q+ + T P D +
Sbjct: 215 LVAALALD-GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 341 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 93.9 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 92.65 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 91.9 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 90.81 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 90.28 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 87.82 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 87.7 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=4.8e-39 Score=311.03 Aligned_cols=278 Identities=14% Similarity=0.199 Sum_probs=223.0
Q ss_pred CHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHHHH
Q 019388 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (341)
Q Consensus 44 tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 123 (341)
...++++++++++||++|+++. .+..++.+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 73 ~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~ 149 (643)
T d1pg4a_ 73 LAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 149 (643)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHH
Confidence 3467788888999999999986 5455677899999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCCh---------hhHHhh-CcccCCcccEEEEeccCCchhhHHhhh
Q 019388 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSC-LPRCCLYLKTIVSFANVSSSQKKEAEE 193 (341)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 193 (341)
++|++++|+++.++.+++.+++++++++++|+++... ..+... .......+..++.++....... .
T Consensus 150 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~----~ 225 (643)
T d1pg4a_ 150 RIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID----W 225 (643)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC----C
T ss_pred HhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccc----c
Confidence 9999999999999999999999999999999987422 111111 1223356677777665432110 0
Q ss_pred hCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhh-hhhhhhhccccCCCCcEEEEe
Q 019388 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSF 272 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~ 272 (341)
.......+.................++++++|+|||||||.||||++||++++.+... ....+ ++.++|++++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~~~~ 300 (643)
T d1pg4a_ 226 QEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYWCT 300 (643)
T ss_dssp CBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEEEC
T ss_pred ccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEEEEe
Confidence 0011233444444434444555668899999999999999999999999997766554 44445 78899999999
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
.|++|++|+.. ++.+++.|+++++.++ ++..+++.|+++++|+++++|++++.|+++....
T Consensus 301 ~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~ 367 (643)
T d1pg4a_ 301 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 367 (643)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG
T ss_pred CChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchh
Confidence 99999999987 7789999999999753 7899999999999999999999999998765443
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-37 Score=302.21 Aligned_cols=277 Identities=18% Similarity=0.243 Sum_probs=218.1
Q ss_pred CCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 43 ~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
+...++|+++++++||++|+++. .+..+..+++||+||.++++++|++|+ ++|+++||+|+++++|++++++++||
T Consensus 59 N~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA 135 (640)
T d1ry2a_ 59 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA 135 (640)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 34588899999999999999986 555667789999999999999999997 67999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChh--------hHHhhCcccCCcccEEEEeccCCchhhHHhhh
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP--------SILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 193 (341)
|+++|++++|+++.++.+++.++++++++++++++..... ............+.....+........ ..
T Consensus 136 ~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 212 (640)
T d1ry2a_ 136 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---AF 212 (640)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---CC
T ss_pred hccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---cc
Confidence 9999999999999999999999999999999999875331 111111222234444444433321100 00
Q ss_pred hCccceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhh-hhhhccccCCCCcEEEEe
Q 019388 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCSEEDTYFSF 272 (341)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~-~~~~~~~~~~~~d~~l~~ 272 (341)
.......+..............+..++++++|+|||||||.||||+++|++++.+...... .+ ++.++|++++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~~~d~~l~~ 287 (640)
T d1ry2a_ 213 HAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFFTA 287 (640)
T ss_dssp CSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEEEC
T ss_pred cccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCCcccceeec
Confidence 0011222333333333344455667889999999999999999999999998887665443 33 78899999999
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEecC-----CHHHHHHHhhhhcCcEEeccchHHHHHHHHH
Q 019388 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGT 330 (341)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 330 (341)
+|++|++|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+..
T Consensus 288 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 351 (640)
T d1ry2a_ 288 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG 351 (640)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC
T ss_pred cchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcc
Confidence 99999999876 7889999999988753 7899999999999999999999999887643
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-36 Score=285.50 Aligned_cols=275 Identities=22% Similarity=0.275 Sum_probs=224.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
+...||+++|++.++++||++|+++. + +++++++||+||++++.++|+.|.++|+++||+|+++++|++++++++
T Consensus 8 ~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 82 (534)
T d1v25a_ 8 DEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY 82 (534)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence 34558999999999999999999876 3 455688999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|||+++|++++|+++.++.+++.++++.+++++++++............. ...+...+......... ..
T Consensus 83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~ 151 (534)
T d1v25a_ 83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKTVQHFVVMDEKAPEG----------YL 151 (534)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSSCCEEEESSSCCCTT----------CE
T ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhc-ccccceeEEeecccccc----------cc
Confidence 99999999999999999999999999999999999999887766555433 34555555554443211 11
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
..... ...........++++++++|||||||.||||+++|.+++.++....... ......+|++++.+|++|.+
T Consensus 152 ~~~~~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~ 225 (534)
T d1v25a_ 152 AYEEA---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHVN 225 (534)
T ss_dssp EHHHH---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSHH
T ss_pred ccccc---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhhc
Confidence 11111 1223334556788999999999999999999999999987665433222 23677889999999999999
Q ss_pred HHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHhhhh
Q 019388 280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCTH 336 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 336 (341)
++...+..+..|+++++... ++..++..+.++++|++.++|.++..+++.....-..
T Consensus 226 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~ 284 (534)
T d1v25a_ 226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR 284 (534)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC
T ss_pred cccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccccc
Confidence 99998888888888887654 9999999999999999999999999999876655433
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.6e-35 Score=280.68 Aligned_cols=282 Identities=17% Similarity=0.229 Sum_probs=222.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhC---CCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q 019388 33 DGLLESPAGLESPWQFFCDSAKRI---PNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYG 109 (341)
Q Consensus 33 ~~~~~~~~~~~tl~~~l~~~~~~~---p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~ 109 (341)
.+.|..|.+..+++++|.+.++++ |+.+++.+. +.. +++||+||.+++.++|+.|.++|+++||+|++++
T Consensus 7 ~p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~ 79 (541)
T d1lcia_ 7 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCS 79 (541)
T ss_dssp CCCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEe
Confidence 355667777789999999999988 555555543 222 6799999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhH
Q 019388 110 SNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189 (341)
Q Consensus 110 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (341)
+|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+..... ..+....+++++......
T Consensus 80 ~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 156 (541)
T d1lcia_ 80 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDYQ-- 156 (541)
T ss_dssp SSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCBT--
T ss_pred CCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccc-cccccceeeeecCCcccc--
Confidence 99999999999999999999999999999999999999999999999988777666544 336777777776553321
Q ss_pred HhhhhCccceeHHHHHHcC-------CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhcccc
Q 019388 190 EAEELGVSCFSWEEFLQLG-------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV 262 (341)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~ 262 (341)
....+....... ....+.....++++++++|||||||.||||++||++++.........+ ....
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~--~~~~ 227 (541)
T d1lcia_ 157 -------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQ 227 (541)
T ss_dssp -------TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCC
T ss_pred -------ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhc--cccc
Confidence 233444443221 112233444668899999999999999999999999988777654432 1225
Q ss_pred CCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHh
Q 019388 263 CSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQ 333 (341)
Q Consensus 263 ~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 333 (341)
+..++++++.+|++|.+++...+..+..|+.++.... +....+..+.++++|.+.++|.++..+++.....
T Consensus 228 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~ 299 (541)
T d1lcia_ 228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID 299 (541)
T ss_dssp CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCcccccccccccccc
Confidence 6788999999999999999988888888888887766 9999999999999999999999999988655443
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3e-35 Score=278.37 Aligned_cols=265 Identities=15% Similarity=0.143 Sum_probs=214.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..|++++|++.++++||++|+++. + +++||+||++++.++|+.|.++|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA 94 (536)
T d1mdba_ 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (536)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 369999999999999999999874 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHh----hCcccCCcccEEEEeccCCchhhHHhhhhCcc
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS----CLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 197 (341)
|+++|++++|+++.++.+++.++++.++++++++++........ ........+...+.......
T Consensus 95 ~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (536)
T d1mdba_ 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (536)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------
Confidence 99999999999999999999999999999999998743321111 11111123333333222211
Q ss_pred ceeHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 019388 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (341)
...++++ .......+...++++++++|||||||.||||++||+++..++......+ ++..+|++++..|++|
T Consensus 163 ~~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 234 (536)
T d1mdba_ 163 FLPLEDL---HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (536)
T ss_dssp SEEGGGC---CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred ccchhhc---ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence 2222222 1223344566789999999999999999999999999999999988887 8999999999999999
Q ss_pred HHHHHH-H-HHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHhhh
Q 019388 278 IYDQII-E-THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCT 335 (341)
Q Consensus 278 ~~g~~~-~-l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 335 (341)
.+|+.. + +..+..|.+++..+. ++..++..+++++++.+..+|..+..+.........
T Consensus 235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (536)
T d1mdba_ 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD 295 (536)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC
T ss_pred ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccccc
Confidence 999875 4 444555677777665 999999999999999999999999998877665533
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=2.3e-34 Score=271.26 Aligned_cols=246 Identities=19% Similarity=0.226 Sum_probs=203.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHH
Q 019388 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (341)
Q Consensus 40 ~~~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~ 119 (341)
+...||.++|+++++++||++|+++. + +++||+||+++++++|+.|+++|+++||+|+++++|++++++++
T Consensus 20 ~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~ 90 (514)
T d1amua_ 20 PRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 90 (514)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHH
Confidence 35689999999999999999999874 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccce
Q 019388 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (341)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 199 (341)
|||+++|++++|+++.++.+++.++++.++++++|++....+.+..... .. ..........
T Consensus 91 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~----~~-~~~~~~~~~~-------------- 151 (514)
T d1amua_ 91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF----NG-QVEIFEEDTI-------------- 151 (514)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC----CS-EEEECCCSTT--------------
T ss_pred HHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcc----cc-cccccccccc--------------
Confidence 9999999999999999999999999999999999999987665543321 11 1111111100
Q ss_pred eHHHHHHcCCCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 019388 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (341)
..........+..++++++++|||||||.||+|++||.++...+......+ +...+|++++.+|++|.+
T Consensus 152 ------~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 220 (514)
T d1amua_ 152 ------KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA 220 (514)
T ss_dssp ------TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred ------cccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceecccccc
Confidence 001112233445678999999999999999999999999999999988877 889999999999999999
Q ss_pred HHHHHHHHHhcCceEEEecC----CHHHHHHHhhhhcCcEEeccchHHH
Q 019388 280 DQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYD 324 (341)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~ 324 (341)
++..++.++..|+++++... +....++.+..+.++.+..+|....
T Consensus 221 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (514)
T d1amua_ 221 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV 269 (514)
T ss_dssp HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHT
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecc
Confidence 99998899999999998753 6788899999999999999997654
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.9e-33 Score=263.23 Aligned_cols=260 Identities=17% Similarity=0.213 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHhCCCCcceeeeeccCCCCcceEEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCChHHHHHHHH
Q 019388 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (341)
Q Consensus 42 ~~tl~~~l~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~lA 121 (341)
..|++++|++.++++||++|+.+. ++. +++||+||.++++++|++|+++|+++|++|+++++|++++++++||
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 379999999999999999999886 433 7899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeecCCCChhHHHHHhhcCceeEEEEcCCChhhHHhhCcccCCcccEEEEeccCCchhhHHhhhhCccceeH
Q 019388 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (341)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
|+++|++++|+++.++.+++.+++++++++++|++.......... .. ....+++.+++
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~--~~-~~~~~~i~~~~------------------- 131 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF--QS-GSGARIIFLGD------------------- 131 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHH--HT-TCCCEEEEHHH-------------------
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHh--hh-ccccccccchh-------------------
Confidence 999999999999999999999999999999999988643221111 11 23333444331
Q ss_pred HHHHHcC-----CCCCCCCCCCCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 019388 202 EEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (341)
Q Consensus 202 ~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (341)
+.... ..........++++++++|||||||.||+|+++|+++..++......+ .......+++++.+|++
T Consensus 132 --~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~ 206 (503)
T d3cw9a1 132 --LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY 206 (503)
T ss_dssp --HEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred --hhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence 21111 122333456788999999999999999999999999999998866544 12445668999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEecC-CHHHHHHHhhhhcCcEEeccchHHHHHHHHHHHhhh
Q 019388 277 HIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGTICQCT 335 (341)
Q Consensus 277 h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 335 (341)
|.++... .+.+...++.+++.+. ++..++..+.+++++.+..+|+.+..++........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (503)
T d3cw9a1 207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS 267 (503)
T ss_dssp SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT
T ss_pred cccccccccccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccc
Confidence 8888886 6667777777777765 999999999999999999999999999876665443
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=93.90 E-value=0.14 Score=45.49 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=73.7
Q ss_pred eeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEecC--CHHHHHHHhhhhcCcE
Q 019388 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (341)
Q Consensus 238 V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (341)
..+|++.+...+..++..+.. .++.++|++...++-+..+ +..+++++..|+..+..+. ..+.+...+++.+++.
T Consensus 46 ~~lTy~el~~~~~~lA~~L~~--~Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~ 122 (541)
T d1lcia_ 46 VNITYAEYFEMSVRLAEAMKR--YGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 122 (541)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred eEeeHHHHHHHHHHHHHHHHH--cCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceE
Confidence 568999999999998887643 3789999999988876432 3447889999998888865 8899999999999999
Q ss_pred EeccchHHHHHHHHH
Q 019388 316 FSGVPRVYDRIYTGT 330 (341)
Q Consensus 316 ~~~~P~~~~~l~~~~ 330 (341)
++.....+..+.+..
T Consensus 123 vi~~~~~~~~~~~~~ 137 (541)
T d1lcia_ 123 VFVSKKGLQKILNVQ 137 (541)
T ss_dssp EEECGGGHHHHHHHH
T ss_pred Eeeeccccccchhcc
Confidence 999998887776644
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=92.65 E-value=0.6 Score=40.86 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=77.7
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.||.+|++. .+-.+|+..|...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..
T Consensus 36 ~Pd~~Al~~---------~~~~~Ty~eL~~~v~~lA~~L~~--~Gv~~gd~Vai~~~n~~~~-v~~~la~~~~G~v~v~l 103 (514)
T d1amua_ 36 RPNNVAIVC---------ENEQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPI 103 (514)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEE---------CCeeEcHHHHHHHHHHHHHHHHH--cCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEe
Confidence 578888863 12369999999999998886643 3889999999999887654 44488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRI 326 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (341)
+. .++.+...++..++..++..+.....+
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 134 (514)
T d1amua_ 104 DIEYPKERIQYILDDSQARMLLTQKHLVHLI 134 (514)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCCCCHHHHHHHHhccCCcEEEEehhhhhhh
Confidence 75 889999999999999999888776554
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=91.90 E-value=0.99 Score=39.64 Aligned_cols=103 Identities=5% Similarity=-0.170 Sum_probs=80.6
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++...+|- .-.+|+..+...+..++..+.. .++.++|++...++.+..+ +..+++++..|+..+..
T Consensus 24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~--~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 95 (534)
T d1v25a_ 24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRA--LGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTA 95 (534)
T ss_dssp STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHH--CCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEec
Confidence 56778876665542 2358999999999998886643 3788999999999876443 34488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccchHHHHHHH
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (341)
+. ..+.+...+++.++..+.........+.+
T Consensus 96 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 96 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 75 88999999999999999988877766543
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=90.81 E-value=0.89 Score=41.39 Aligned_cols=98 Identities=9% Similarity=0.093 Sum_probs=75.8
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.+|.+|++.... .+|. ...+|++.|...+..++..+.. .|+.++|++...+|.+.-+ +..+++++..|+..+..
T Consensus 85 ~~d~~Ali~~~~-~~~~--~~~~TY~eL~~~v~~~A~~L~~--~Gv~~Gd~V~i~~~n~~e~-iv~~lA~~~~Gav~v~l 158 (643)
T d1pg4a_ 85 NGDRTAIIWEGD-DTSQ--SKHISYRELHRDVCRFANTLLD--LGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVI 158 (643)
T ss_dssp HTTSEEEEEECS-STTC--EEEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEec-CCCC--ceEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEecccchHH-HHHHHHHHHhCeEEEec
Confidence 457788865432 2332 3468999999999998887644 3889999999999987553 34488899999998887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccch
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPR 321 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~ 321 (341)
.. .++.+...+++.++.++.....
T Consensus 159 ~~~~~~~~l~~~l~~~~~~~li~~~~ 184 (643)
T d1pg4a_ 159 FGGFSPEAVAGCIIDSSSRLVITADE 184 (643)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcch
Confidence 64 8899999999999999887653
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=90.28 E-value=0.76 Score=39.68 Aligned_cols=94 Identities=14% Similarity=-0.019 Sum_probs=72.8
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.-..| ..+|++.+...+..++..+.. .+..++|++...++-+.. .+..+++++..|+..+..
T Consensus 15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpi 84 (503)
T d3cw9a1 15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHA--DGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALL 84 (503)
T ss_dssp STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHH--cCcCCCCEEEEEeCCCHH-HHHHHHHHHHhCcEEEEe
Confidence 4677787654433 358999999999988886644 378899999999886543 333488899999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccch
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPR 321 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~ 321 (341)
+. .++.+...+++.++..+.....
T Consensus 85 ~~~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 85 NPRLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEESSC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEeecc
Confidence 65 8889999999999999876654
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=87.82 E-value=1.6 Score=38.02 Aligned_cols=91 Identities=9% Similarity=-0.054 Sum_probs=71.0
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.+|.+|++- | .-.+|++.+...+..++..+.. .++.++|++...+|-+..+ +..+++++..|+..+..
T Consensus 38 ~pd~~Al~~---~------~~~~Ty~el~~~v~~~A~~L~~--~Gv~~gd~V~i~~~n~~~~-~v~~lA~~~~G~i~vpl 105 (536)
T d1mdba_ 38 YGDRIAITC---G------NTHWSYRELDTRADRLAAGFQK--LGIQQKDRVVVQLPNIKEF-FEVIFALFRLGALPVFA 105 (536)
T ss_dssp HTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEECCCSSHHH-HHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEE---C------CEeEcHHHHHHHHHHHHHHHHH--cCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEec
Confidence 457777763 1 1358999999999988886633 3789999999998876332 44588999999999988
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccc
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVP 320 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P 320 (341)
+. ..+.+...+++.++..+....
T Consensus 106 ~~~~~~~~~~~~l~~~~~~~~~~~~ 130 (536)
T d1mdba_ 106 LPSHRSSEITYFCEFAEAAAYIIPD 130 (536)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhhccceEeccc
Confidence 65 888999999999999887654
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.70 E-value=2.1 Score=38.53 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=75.4
Q ss_pred CCCCeEEEEeCCCCCCCccceeeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 019388 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (341)
Q Consensus 218 ~~~~~a~i~~TSGsTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~~v~~ 297 (341)
.++.+|++.. +..+| ....+|++.|...+..++..+.. ..|+.++|++...+|.+--+ +..+++++..|+..+..
T Consensus 72 ~pd~~Ali~~-~~~~g--~~~~~Ty~eL~~~v~~~A~~L~~-~~Gv~~Gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpi 146 (640)
T d1ry2a_ 72 TPNKKAIIFE-GDEPG--QGYSITYKELLEEVCQVAQVLTY-SMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVV 146 (640)
T ss_dssp CTTSEEEEEE-CSSTT--CCEEEEHHHHHHHHHHHHHHHHH-TSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEEEE-ecCCC--CeeEEeHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEeCCCHHH-HHHHHHhccCceEeecC
Confidence 5788888754 32333 34578999999999988876532 23789999999999875443 33488899999999887
Q ss_pred cC--CHHHHHHHhhhhcCcEEeccch
Q 019388 298 RG--DVRYLMEDIQELKPTMFSGVPR 321 (341)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~ 321 (341)
.. .++.+...+++.++..++....
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (640)
T d1ry2a_ 147 FAGFSSNSLRDRINDGDSKVVITTDE 172 (640)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCCHHHHHHHHHhhhccccccchh
Confidence 65 8899999999999999887664
|