Citrus Sinensis ID: 019404

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPSTASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST
Secondary Structure (PSIPRED)
ccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccEEEEEEEEEEEccccccccccccEEEccccccccccccccEEEEccccccccHHHEEEccccccEEEEEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mavelmgfpkrmmEDQTAIQEAATQGIKSMEHLIRLMShhqssnhvdcsdltdltVSKFKKVISLLNRtgharfrrgpvhsspssssasapaaaasgnsphtqtltltppaptmavapstasyvqsqphsltldftkpslfsgnvkstelefskdsfcvssnssfmssaitgdgsvsngkqggssiflapqapavsagkpplaaqpykkrcqdhkdhsddlsgkfsgstsgnnkchcskrrknrvkktirvpaisskiadippdeyswrkygqkpikgspyprgyykcstmrgcparkhverapddptmLIVTYegehrhsqaamqenaapagvglvfest
Flexible Loop (DISEMBL)
mavelmgfpkrmmEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLnrtgharfrrgpvhsspssSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPSTASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDlsgkfsgstsgnnkchcskrrknrvkktirvpaisskiadippdeyswrkygqkpikgspyprgYYKCSTMRGCParkhverapddpTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST
Low Complexity Region (SEG)
MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHsspssssasapaaaasGNSPHtqtltltppaptmavapstaSYVQSQPHSLTLDFTKPSLFSGNVKSTELEfskdsfcvssnssfmssAITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST
Disordered region (IsUnstruct)
********************************LIRL********HVDCSDLTDLTVSKFKKVISLLNRTG***********************************************************************************************************************************************************************************RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCP*************MLIVTY***************************
Disordered Region (DISOPRED)
MAVELMGFPK*************TQGIKSME***********************TVSKFKKV***********************************************************************************************************************************************************************************************ISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEH***********************
Disordered Region (DISEMBL)
MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFR***************************QTLTLTPPAPTMA*************HSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVSNGKQGGSSIFLAPQAPA***************************************************KKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST
Disordered Region (DISPRO)
***ELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARF************************************************************************************************************************************************************************NRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGE************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPSTASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q9SV15	325	Probable WRKY transcripti	yes	no	0.938	0.984	0.645	1e-120
Q9SJA8	321	Probable WRKY transcripti	no	no	0.926	0.984	0.648	1e-111
Q9SR07	330	Probable WRKY transcripti	no	no	0.882	0.912	0.385	3e-45
Q9STX0	353	Probable WRKY transcripti	no	no	0.416	0.402	0.557	8e-45
O04336	380	Probable WRKY transcripti	no	no	0.434	0.389	0.574	2e-43
Q93WU6	330	Probable WRKY transcripti	no	no	0.859	0.887	0.357	1e-42
Q32SG4	397	Protein WRKY1 OS=Zea mays	N/A	no	0.325	0.279	0.605	3e-41
O22176	317	Probable WRKY transcripti	no	no	0.293	0.315	0.712	5e-41
O64747	427	Probable WRKY transcripti	no	no	0.240	0.192	0.563	5e-24
Q9SA80	430	Probable WRKY transcripti	no	no	0.263	0.209	0.531	4e-23

>sp|Q9SV15|WRK11_ARATH Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/344 (64%), Positives = 259/344 (75%), Gaps = 24/344 (6%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKF 59
           MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKF
Sbjct: 1   MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKF 58

Query: 60  KKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPS 119
           K VISLLNRTGHARFRRGPVHS+ S++S    +       P    +  T   P +   PS
Sbjct: 59  KTVISLLNRTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPEAPIVRTTTNHPQIVPPPS 118

Query: 120 TASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVSNG 179
                     S+TLDF+KPS+F    KS ELEFSK++F VS NSSFMSSAITGDGSVSNG
Sbjct: 119 ----------SVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNG 168

Query: 180 KQGGSSIFLA--PQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 237
           K     IFLA  P  P  S+GKPPLA  PY+KRC +H +HS+  SGK SGS  G  KCHC
Sbjct: 169 K-----IFLASAPLQPVNSSGKPPLAGHPYRKRCLEH-EHSESFSGKVSGSAYG--KCHC 220

Query: 238 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPAR 297
            K RKNR+K+T+RVPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPAR
Sbjct: 221 KKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPAR 280

Query: 298 KHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 340
           KHVERA DDP MLIVTYEGEHRH+Q+AMQEN + +G+  LVF S
Sbjct: 281 KHVERALDDPAMLIVTYEGEHRHNQSAMQENISSSGINDLVFAS 324

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJA8|WRK17_ARATH Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=2 SV=2

 Score =  403 bits (1035), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/344 (64%), Positives = 262/344 (76%), Gaps = 28/344 (8%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFK 60
           M V++M  PK  MEDQTAIQEAA+QG+KSMEHLIR++S+     +VDCS++TD TVSKFK
Sbjct: 1   MTVDIMRLPK--MEDQTAIQEAASQGLKSMEHLIRVLSNRPEERNVDCSEITDFTVSKFK 58

Query: 61  KVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPST 120
           KVISLLNR+GHARFRRG                 +  +S     + +T PAPT   AP+ 
Sbjct: 59  KVISLLNRSGHARFRRG--------------PVHSPPSSSVPPPVKVTTPAPTQISAPAP 104

Query: 121 ASYVQSQPHSLTLDFTKPSLFSGNVKSTEL-EFSKDSFCVSSNSSFMSSAITGDGSVSNG 179
            S+VQ+   S+TLDFT+PS+F    KS+E+ EF+K+SF VSSNSSFMSSAITGDGSVS G
Sbjct: 105 VSFVQANQQSVTLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSKG 164

Query: 180 KQGGSSIFLAPQAPAV---SAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCH 236
               SSIFLAP APAV   S+GKPPL+  PY+KRC +H DHS+  SGK SGS  GN KCH
Sbjct: 165 ----SSIFLAP-APAVPVTSSGKPPLSGLPYRKRCFEH-DHSEGFSGKISGS--GNGKCH 216

Query: 237 CSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPA 296
           C K RKNR+K+T+RVPA+S+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPA
Sbjct: 217 CKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPA 276

Query: 297 RKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFES 340
           RKHVERA DD TMLIVTYEGEHRH Q+ MQE+  P+  GLVF S
Sbjct: 277 RKHVERALDDSTMLIVTYEGEHRHHQSTMQEHVTPSVSGLVFGS 320

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR07|WRK39_ARATH Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=2 SV=1

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 182/335 (54%), Gaps = 34/335 (10%)

Query: 19  IQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNR-TGHARFRRG 77
           ++ A    I+S   ++ L+S  ++S+    +  T   VSKFK+V SLL R  GH +FR  
Sbjct: 4   VEAANRSAIESCHGVLNLLSQ-RTSDPKSLTVETGEVVSKFKRVASLLTRGLGHGKFRST 62

Query: 78  PVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPSTASYVQSQP-HSLTLDFT 136
               S         +    GN        +  P P + + P++A Y + +P H L     
Sbjct: 63  NKFRSSFPQHIFLESPICCGNDLSGDYTQVLAPEP-LQMVPASAVYNEMEPKHQLG---- 117

Query: 137 KPSLFSGN---VKSTELEFS----KDSFCVSSNSSFMSSAITGDGSVSNGKQGGSSIFLA 189
            PSL   +   V  + LE      +  + +  N   ++ + +  G        GSS +  
Sbjct: 118 HPSLMLSHKMCVDKSFLELKPPPFRAPYQLIHNHQQIAYSRSNSGVNLKFDGSGSSCY-- 175

Query: 190 PQAPAVSAG-KPPLAAQPYKKRCQDHKDHSDDLSGKFSGS--------TSGN------NK 234
              P+VS G +  +++        D+  +S  L+G   GS         SG+      +K
Sbjct: 176 --TPSVSNGSRSFVSSLSMDASVTDYDRNSFHLTGLSRGSDQQHTRKMCSGSLKCGSRSK 233

Query: 235 CHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGC 294
           CHCSK+RK RVK++I+VPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCS++RGC
Sbjct: 234 CHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGC 293

Query: 295 PARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 329
           PARKHVER  D+ +MLIVTYEGEH HS+    ++A
Sbjct: 294 PARKHVERCIDETSMLIVTYEGEHNHSRILSSQSA 328

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STX0|WRKY7_ARATH Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1

 Score =  181 bits (458), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 92/165 (55%), Positives = 117/165 (70%), Gaps = 23/165 (13%)

Query: 159 VSSNSSFMSS--AITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKD 216
           VS+ +SFMSS    T    +S+G +     F  P   + S GKPPL++   K+RC     
Sbjct: 196 VSATNSFMSSHRCDTDSTHMSSGFE-----FTNPSQLSGSRGKPPLSSASLKRRC----- 245

Query: 217 HSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPI 276
                      ++S +++CHCSK+RK+RVK+ IRVPA+SSK+ADIP DE+SWRKYGQKPI
Sbjct: 246 -----------NSSPSSRCHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPI 294

Query: 277 KGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 321
           KGSP+PRGYYKCS++RGCPARKHVERA DD  MLIVTYEG+H H+
Sbjct: 295 KGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNHA 339

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O04336|WRK21_ARATH Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 116/162 (71%), Gaps = 14/162 (8%)

Query: 159 VSSNSSFMSSAITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHS 218
           +SS  SF+SS ++ DGSV+N +   S  F  P     S  +  L +   K++C    D  
Sbjct: 223 MSSTRSFVSS-LSIDGSVANIEGKNSFHFGVPS----STDQNSLHS---KRKCPLKGDEH 274

Query: 219 DDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKG 278
             L     GS+S   +CHC+K+RK+RV+++IRVPAIS+K+ADIPPD+YSWRKYGQKPIKG
Sbjct: 275 GSLK---CGSSS---RCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKG 328

Query: 279 SPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 320
           SPYPRGYYKCS+MRGCPARKHVER  +DP MLIVTYE EH H
Sbjct: 329 SPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNH 370

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU6|WRK74_ARATH Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=2 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/352 (35%), Positives = 182/352 (51%), Gaps = 59/352 (16%)

Query: 13  MEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNR-TGH 71
           ME+  A  +AA +    + +L+   ++   S  V+    T   V KFK+V SLL+R  G 
Sbjct: 1   MEEVEAANKAAVESCHGVLNLLSQQTNDSKSIMVE----TREAVCKFKRVSSLLSRGLGQ 56

Query: 72  ARFRRGPVHSSPSSSSA-------SAPAA---AASGNSPHT--QTLTLTPPAP------- 112
            + ++   ++   SSS         +P     A SG  P    + L + P  P       
Sbjct: 57  RKIKKLNNNNYKFSSSLLPQHMFLESPVCSNNAISGCIPILAPKPLQIVPAGPPPLMLFN 116

Query: 113 --------TMAVAPSTASYVQSQPHSLTLDFTKPSLFSGNVKSTELEF--SKDSFC---- 158
                    + + P ++  V  +P+   +   +  ++S +     L+F  S  + C    
Sbjct: 117 QNMCLDKSFLELKPPSSRAVDPKPYQF-IHTHQQGVYSRSKSGLNLKFDGSIGASCYSPS 175

Query: 159 VSSNSSFMSSAITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDH-KDH 217
           +S+ S    S+++ DGSV++  +    +   PQ                     DH   H
Sbjct: 176 ISNGSRSFVSSLSMDGSVTDYDRNSFHLIGLPQG-------------------SDHISQH 216

Query: 218 SDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIK 277
           S   S   S      +KCHCSK+RK RVK++I+VPAIS+KIADIPPDEYSWRKYGQKPIK
Sbjct: 217 SRRTSCSGSLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIK 276

Query: 278 GSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 329
           GSP+PRGYYKCS++RGCPARKHVER  ++ +MLIVTYEGEH HS+    ++A
Sbjct: 277 GSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHSRILSSQSA 328

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG4|WRKY1_MAIZE Protein WRKY1 OS=Zea mays PE=1 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 72/119 (60%), Positives = 95/119 (79%), Gaps = 8/119 (6%)

Query: 208 KKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYS 267
           ++RC   +D +        G  +  ++CHCSK+RK R++++I+VPAIS+K+ADIP DE+S
Sbjct: 285 RRRCAGREDGT--------GRCATGSRCHCSKKRKLRIRRSIKVPAISNKVADIPADEFS 336

Query: 268 WRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQ 326
           WRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVER  DDP+MLIVTYEG+H H++   Q
Sbjct: 337 WRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVLAQ 395

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Zea mays (taxid: 4577)

>sp|O22176|WRK15_ARATH Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=2 SV=1

 Score =  168 bits (426), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 89/101 (88%), Gaps = 1/101 (0%)

Query: 221 LSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSP 280
           L+GK   S S + +CHCSK+RK + ++ IRVPAIS+K++D+PPD+YSWRKYGQKPIKGSP
Sbjct: 199 LTGK-CASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSWRKYGQKPIKGSP 257

Query: 281 YPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 321
           +PRGYYKCS++RGCPARKHVERA DD +MLIVTYEG+H HS
Sbjct: 258 HPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHS 298

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O64747|WRK35_ARATH Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1

 Score =  112 bits (279), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 66/87 (75%), Gaps = 5/87 (5%)

Query: 239 KRRKNRVKKTIRVPA---ISSKIAD--IPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRG 293
           KRRK++ KK + +PA   ++S+ +   +P D ++WRKYGQKPIKGSPYPRGYY+CS+ +G
Sbjct: 186 KRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKG 245

Query: 294 CPARKHVERAPDDPTMLIVTYEGEHRH 320
           C ARK VER+  DP ML++TY  EH H
Sbjct: 246 CSARKQVERSRTDPNMLVITYTSEHNH 272

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA80|WRK14_ARATH Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 70/96 (72%), Gaps = 6/96 (6%)

Query: 239 KRRKNRVKKTIRVPA---ISSKIAD--IPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRG 293
           KRRK++ KK + +PA   ++S+ +   +P D ++WRKYGQKPIKGSP+PRGYY+CS+ +G
Sbjct: 188 KRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYYRCSSSKG 247

Query: 294 CPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 329
           C ARK VER+  DP ML++TY  EH H    +Q NA
Sbjct: 248 CSARKQVERSRTDPNMLVITYTSEHNHPW-PIQRNA 282

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
449437056	350	PREDICTED: probable WRKY transcription f	0.976	0.951	0.701	1e-127
255548594	321	WRKY transcription factor, putative [Ric	0.929	0.987	0.747	1e-121
302399127	341	WRKY domain class transcription factor [	0.938	0.938	0.676	1e-118
30689072	325	putative WRKY transcription factor 11 [A	0.938	0.984	0.645	1e-118
297798820	335	WRKY transcription factor 11 [Arabidopsi	0.953	0.970	0.650	1e-117
22329054	324	putative WRKY transcription factor 11 [A	0.935	0.984	0.645	1e-117
16604573	325	putative putaive DNA-binding protein [Ar	0.938	0.984	0.642	1e-117
21537078	324	putaive DNA-binding protein [Arabidopsis	0.935	0.984	0.645	1e-117
312282033	341	unnamed protein product [Thellungiella h	0.970	0.970	0.653	1e-117
225466161	338	PREDICTED: probable WRKY transcription f	0.935	0.943	0.661	1e-115

>gi|449437056|ref|XP_004136308.1| PREDICTED: probable WRKY transcription factor 11-like [Cucumis sativus] gi|449525016|ref|XP_004169517.1| PREDICTED: probable WRKY transcription factor 11-like [Cucumis sativus] gi|315613822|gb|ADU52516.1| WRKY protein [Cucumis sativus]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/358 (70%), Positives = 284/358 (79%), Gaps = 25/358 (6%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFK 60
           MAV+LM FPK  M+DQ AIQEAA+QG+KSMEHLIRL+SH QSSNHVDCSDLTD TVSKFK
Sbjct: 1   MAVDLMSFPK--MDDQIAIQEAASQGLKSMEHLIRLLSHKQSSNHVDCSDLTDATVSKFK 58

Query: 61  KVISLLNRTGHARFRRGPV------------HSSPSSSSASAPAAAASGNSPHTQTLTLT 108
           KVISLLNRTGHARFRRGPV            H S + +    P    S   P+   L  T
Sbjct: 59  KVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSQNQAMTLTPTPFTS--PPNVPALPFT 116

Query: 109 PPA----PTMAVAPSTASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSS 164
            PA    P   V  + A+++ SQP S+TLDFT+P++ + N K  +LEFSK++F VSS+SS
Sbjct: 117 APATVAQPQTKVVATAANFL-SQPQSMTLDFTRPNILNSNPKGADLEFSKETFSVSSSSS 175

Query: 165 FMSSAITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGK 224
           FMSSAITGDGSVSNGK G +SIFLAP AP  S GKPPL+A PYKKRC +H DHS+DLSGK
Sbjct: 176 FMSSAITGDGSVSNGKLG-TSIFLAP-APTASGGKPPLSAAPYKKRCHEH-DHSEDLSGK 232

Query: 225 FSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRG 284
           FSGSTS + KCHCSKRRKNR+KKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRG
Sbjct: 233 FSGSTSISGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRG 292

Query: 285 YYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQEN-AAPAGVGLVFEST 341
           YYKCSTMRGCPARKHVER P+DP MLIVTYEGEHRH+Q+++ EN AA  GV LVFES+
Sbjct: 293 YYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAAGGVALVFESS 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548594|ref|XP_002515353.1| WRKY transcription factor, putative [Ricinus communis] gi|223545297|gb|EEF46802.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 258/345 (74%), Positives = 281/345 (81%), Gaps = 28/345 (8%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFK 60
           MAVELM F K  MEDQ AIQEAA+QG+KSMEHLIRLMSH   SNHVDC+DLTDLTVSKF+
Sbjct: 1   MAVELMSFAK--MEDQMAIQEAASQGLKSMEHLIRLMSH--KSNHVDCTDLTDLTVSKFR 56

Query: 61  KVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPST 120
           KVISLLNRTGHARFRRGPV SS   SSA AP+A+ S N   T+       AP   V P T
Sbjct: 57  KVISLLNRTGHARFRRGPVQSSSCLSSAPAPSASQSINLNTTRIAAPP--APAPGVHPVT 114

Query: 121 A---SYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVS 177
           A   S+VQ QP S+TLDFTKP++FS N KS+ELEFS      SS+SSFMSSAITGDGSVS
Sbjct: 115 APAASFVQ-QPQSVTLDFTKPNIFSSNGKSSELEFSV-----SSSSSFMSSAITGDGSVS 168

Query: 178 NGKQGGSSIFLAPQAPAVSAGKPPLAAQPY-KKRCQDHKDHSDDLSGKFSGSTSGNNKCH 236
           NGKQG SSIFLAP   AVS GKPPL++ PY KKRC +H DHS+D+SG  SG      KCH
Sbjct: 169 NGKQG-SSIFLAP---AVSGGKPPLSSAPYNKKRCHEH-DHSEDVSGSASG------KCH 217

Query: 237 CSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPA 296
           CSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCST+RGCPA
Sbjct: 218 CSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPA 277

Query: 297 RKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST 341
           RKHVERA DDPTMLIVTYEGEHRH+QAAMQ+N +  G+GLVFEST
Sbjct: 278 RKHVERATDDPTMLIVTYEGEHRHTQAAMQDNLS-GGIGLVFEST 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399127|gb|ADL36858.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/362 (67%), Positives = 272/362 (75%), Gaps = 42/362 (11%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQS-----SNHVDCSDLTDLT 55
           M VELM FPK  MEDQ AIQEAA+QG++SMEHLIR +SH Q      S  +DC+D+TD T
Sbjct: 1   MTVELMNFPK--MEDQKAIQEAASQGLQSMEHLIRFLSHQQQHPNNQSARLDCTDITDHT 58

Query: 56  VSKFKKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPP---AP 112
           VSKFKKVISLLNRTGHARFRRGP       +    P   +S +   +QTL+L P     P
Sbjct: 59  VSKFKKVISLLNRTGHARFRRGP-------AQPVHPVHFSSSHPSPSQTLSLAPALNLTP 111

Query: 113 TMAVAPSTA-----------SYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSS 161
           T A  P TA           S+ QSQPHS+TLDFT+P+ F+ N+KS E+EF+KD+F VSS
Sbjct: 112 TPASVPVTAPAVVQQATIESSFGQSQPHSMTLDFTRPNAFASNLKSAEIEFAKDNFSVSS 171

Query: 162 NSSFMSSAITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDL 221
            SSFMSSAITGDGSVSNGK G SSIFLAP APAVS  KPPL+  P+KKRC +H DHSDD 
Sbjct: 172 GSSFMSSAITGDGSVSNGKLG-SSIFLAP-APAVSGAKPPLSTAPFKKRCHEH-DHSDDT 228

Query: 222 SGKFSGSTSGNN--KCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGS 279
           S KFS S S +   KCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGS
Sbjct: 229 SCKFSASGSASGSGKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGS 288

Query: 280 PYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFE 339
           PYPRGYYKCST+RGCPARKHVERAPDDP MLIVTYEGEHRH         AP  VGLV+E
Sbjct: 289 PYPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHRH---------APESVGLVYE 339

Query: 340 ST 341
           ST
Sbjct: 340 ST 341

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689072|ref|NP_849559.1| putative WRKY transcription factor 11 [Arabidopsis thaliana] gi|39932735|sp|Q9SV15.2|WRK11_ARATH RecName: Full=Probable WRKY transcription factor 11; AltName: Full=WRKY DNA-binding protein 11 gi|23297314|gb|AAN12939.1| putative DNA-binding protein [Arabidopsis thaliana] gi|332660527|gb|AEE85927.1| putative WRKY transcription factor 11 [Arabidopsis thaliana]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/344 (64%), Positives = 259/344 (75%), Gaps = 24/344 (6%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKF 59
           MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKF
Sbjct: 1   MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKF 58

Query: 60  KKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPS 119
           K VISLLNRTGHARFRRGPVHS+ S++S    +       P    +  T   P +   PS
Sbjct: 59  KTVISLLNRTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPEAPIVRTTTNHPQIVPPPS 118

Query: 120 TASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVSNG 179
                     S+TLDF+KPS+F    KS ELEFSK++F VS NSSFMSSAITGDGSVSNG
Sbjct: 119 ----------SVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNG 168

Query: 180 KQGGSSIFLA--PQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 237
           K     IFLA  P  P  S+GKPPLA  PY+KRC +H +HS+  SGK SGS  G  KCHC
Sbjct: 169 K-----IFLASAPLQPVNSSGKPPLAGHPYRKRCLEH-EHSESFSGKVSGSAYG--KCHC 220

Query: 238 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPAR 297
            K RKNR+K+T+RVPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPAR
Sbjct: 221 KKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPAR 280

Query: 298 KHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 340
           KHVERA DDP MLIVTYEGEHRH+Q+AMQEN + +G+  LVF S
Sbjct: 281 KHVERALDDPAMLIVTYEGEHRHNQSAMQENISSSGINDLVFAS 324

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798820|ref|XP_002867294.1| WRKY transcription factor 11 [Arabidopsis lyrata subsp. lyrata] gi|297313130|gb|EFH43553.1| WRKY transcription factor 11 [Arabidopsis lyrata subsp. lyrata]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/349 (65%), Positives = 264/349 (75%), Gaps = 24/349 (6%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKF 59
           MAV+LM FPK  M+DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKF
Sbjct: 1   MAVDLMRFPK--MDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKF 58

Query: 60  KKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMA---- 115
           K VISLLNRTGHARFRRGPVHS+ S    S         +P      +T PA T      
Sbjct: 59  KTVISLLNRTGHARFRRGPVHSTSSPKQQSQIVKTIQPKAP-----VVTQPARTTTNLPQ 113

Query: 116 VAPSTASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGS 175
           + P  +S+V S   S+TLDF+KPS+F    KS++LEFSK++F VS NSSFMSS ITGDGS
Sbjct: 114 IVPPPSSFVHSNQPSVTLDFSKPSVFGTKAKSSDLEFSKENFSVSLNSSFMSSGITGDGS 173

Query: 176 VSNGKQGGSSIFLA--PQAPAVSAGKPPLAA-QPYKKRCQDHKDHSDDLSGKFSGSTSGN 232
           VSNGK     IFLA  P  P  S+GKPPLAA  PY+KRC +H +HS+  SGK SGS  G 
Sbjct: 174 VSNGK-----IFLASAPSQPVNSSGKPPLAAGHPYRKRCLEH-EHSESFSGKVSGS--GY 225

Query: 233 NKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMR 292
            KCHC K RKNR+K+T+RVPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST R
Sbjct: 226 GKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFR 285

Query: 293 GCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 340
           GCPARKHVERA DDP MLIVTYEGEHRH+Q+AMQEN + +GV  LVF S
Sbjct: 286 GCPARKHVERALDDPAMLIVTYEGEHRHNQSAMQENISSSGVNDLVFAS 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329054|ref|NP_567878.2| putative WRKY transcription factor 11 [Arabidopsis thaliana] gi|15384215|gb|AAK96194.1|AF404856_1 WRKY transcription factor 11 [Arabidopsis thaliana] gi|5262766|emb|CAB45914.1| putaive DNA-binding protein [Arabidopsis thaliana] gi|7270058|emb|CAB79873.1| putaive DNA-binding protein [Arabidopsis thaliana] gi|24762195|gb|AAN64164.1| putative WRKY family transcription factor [Arabidopsis thaliana] gi|332660528|gb|AEE85928.1| putative WRKY transcription factor 11 [Arabidopsis thaliana]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/344 (64%), Positives = 260/344 (75%), Gaps = 25/344 (7%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKF 59
           MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKF
Sbjct: 1   MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKF 58

Query: 60  KKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPS 119
           K VISLLNRTGHARFRRGPVHS+ S++S    +       P    +  T   P +   PS
Sbjct: 59  KTVISLLNRTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPEAPIVRTTTNHPQIVPPPS 118

Query: 120 TASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVSNG 179
                     S+TLDF+KPS+F    KS ELEFSK++F VS NSSFMSSAITGDGSVSNG
Sbjct: 119 ----------SVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNG 168

Query: 180 KQGGSSIFLA--PQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 237
           K     IFLA  P  P  S+GKPPLA  PY+KRC +H +HS+  SGK SGS  G  KCHC
Sbjct: 169 K-----IFLASAPLQPVNSSGKPPLAGHPYRKRCLEH-EHSESFSGKVSGSAYG--KCHC 220

Query: 238 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPAR 297
            K+RKNR+K+T+RVPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPAR
Sbjct: 221 -KKRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPAR 279

Query: 298 KHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 340
           KHVERA DDP MLIVTYEGEHRH+Q+AMQEN + +G+  LVF S
Sbjct: 280 KHVERALDDPAMLIVTYEGEHRHNQSAMQENISSSGINDLVFAS 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16604573|gb|AAL24088.1| putative putaive DNA-binding protein [Arabidopsis thaliana]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/344 (64%), Positives = 258/344 (75%), Gaps = 24/344 (6%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKF 59
           MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKF
Sbjct: 1   MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKF 58

Query: 60  KKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPS 119
           K VISLLNRTGHARFRRGPVHS+ S++S    +       P    +  T   P +   PS
Sbjct: 59  KTVISLLNRTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPEAPIVRTTTNHPQIVPPPS 118

Query: 120 TASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVSNG 179
                     S+TLDF+KPS+F    KS ELEFSK++F VS NSSFMSSAITGDGSVSNG
Sbjct: 119 ----------SVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNG 168

Query: 180 KQGGSSIFLA--PQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 237
           K     IFLA  P  P  S+GKPPLA  PY+KRC +H +HS+  SGK SGS  G  KCHC
Sbjct: 169 K-----IFLASAPLQPVNSSGKPPLAGHPYRKRCLEH-EHSESFSGKVSGSAYG--KCHC 220

Query: 238 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPAR 297
            K RKNR+K+T+RVPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRG YKCST RGCPAR
Sbjct: 221 KKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGNYKCSTFRGCPAR 280

Query: 298 KHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 340
           KHVERA DDP MLIVTYEGEHRH+Q+AMQEN + +G+  LVF S
Sbjct: 281 KHVERALDDPAMLIVTYEGEHRHNQSAMQENISSSGINDLVFAS 324

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537078|gb|AAM61419.1| putaive DNA-binding protein [Arabidopsis thaliana]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/344 (64%), Positives = 259/344 (75%), Gaps = 25/344 (7%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKF 59
           MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKF
Sbjct: 1   MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKF 58

Query: 60  KKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAVAPS 119
           K VISLLNRTGHARFRRGPVHS+ S++S    +       P    +  T   P +   PS
Sbjct: 59  KTVISLLNRTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPEAPIVRTTTNHPQIVPPPS 118

Query: 120 TASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITGDGSVSNG 179
                     S+TLDF+KPS+F    KS ELEFSK++F VS NSSFMSSAITGDGSVSNG
Sbjct: 119 ----------SVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNG 168

Query: 180 KQGGSSIFLA--PQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 237
           K     IFLA  P  P  S+GKPPLA  PY+KRC +H +HS+  SGK SGS  G  KCHC
Sbjct: 169 K-----IFLASAPLQPVNSSGKPPLAGHPYRKRCLEH-EHSESFSGKVSGSAYG--KCHC 220

Query: 238 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPAR 297
            K RKNR+K+T+RVPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPAR
Sbjct: 221 KKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPAR 280

Query: 298 KHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 340
           KHVERA DDP MLIVTYEGEHRH+Q+AMQEN + +G+  LVF S
Sbjct: 281 KHVERALDDP-MLIVTYEGEHRHNQSAMQENISSSGINDLVFAS 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282033|dbj|BAJ33882.1| unnamed protein product [Thellungiella halophila]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/349 (65%), Positives = 270/349 (77%), Gaps = 18/349 (5%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMS-----HHQSSNHVDCSDLTDLT 55
           MAV+LM FPK MM+DQ AIQEAA+QG++SM+HLIR++S     H+ ++N+VDCS LTD T
Sbjct: 1   MAVDLMRFPK-MMDDQKAIQEAASQGLQSMDHLIRILSNRPEQHNNNNNNVDCSQLTDFT 59

Query: 56  VSKFKKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLT---PPAP 112
           VSKFK VISLLNRTG ARFRR PVHSSP    +     AA   +P   T  L+   PP P
Sbjct: 60  VSKFKTVISLLNRTGRARFRRAPVHSSPLKQQSQLVNIAAPPETPTRTTANLSQIVPPPP 119

Query: 113 TMAVAPSTASYVQSQPHSLTLDFTKPSLFSGNVKSTELEFSKDSFCVSSNSSFMSSAITG 172
             +V  + +S+V S   S+TLDFTKPS+F    KS+ELEF+K+SF VS NSS+MSSAITG
Sbjct: 120 QPSVVVTPSSFVHSNQPSVTLDFTKPSIFGSKSKSSELEFAKESFSVSLNSSYMSSAITG 179

Query: 173 DGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGN 232
           DGSVS G    SSIFL   AP  S+GKPPLA  PY+KRC +H +HS+D SGK SGS  G+
Sbjct: 180 DGSVSKG----SSIFLG-SAPVNSSGKPPLAGHPYRKRCLEH-EHSEDFSGKISGS--GH 231

Query: 233 NKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMR 292
            KCHC K RKNR+++T+RVPAIS+KIADIPPDE+SWRKYGQKPIKGSP+PRGYYKCST R
Sbjct: 232 GKCHCKKSRKNRMRRTVRVPAISAKIADIPPDEFSWRKYGQKPIKGSPHPRGYYKCSTFR 291

Query: 293 GCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 340
           GCPARKHVERA DDP MLIVTYEGEHRH+Q+AMQEN + +GV  LVF S
Sbjct: 292 GCPARKHVERALDDPAMLIVTYEGEHRHNQSAMQENISSSGVNDLVFAS 340

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466161|ref|XP_002262775.1| PREDICTED: probable WRKY transcription factor 11-like [Vitis vinifera] gi|183979106|emb|CAP08302.1| DNA-binding protein [Vitis thunbergii]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/360 (66%), Positives = 276/360 (76%), Gaps = 41/360 (11%)

Query: 1   MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH----VDCSDLTDLTV 56
           MAVEL+GF K  M++Q AIQ+AA+ G+KSMEHLIR++SH  + NH    +DC ++TD TV
Sbjct: 1   MAVELLGFSK--MDEQIAIQDAASAGLKSMEHLIRMLSHQTNQNHNMNQLDCREITDYTV 58

Query: 57  SKFKKVISLLNRTGHARFRRGPVHSSPSSSSASAPAAAASGNSPHTQTLTLTPPAPTMAV 116
           SKFKKVIS+LNRTGHARFRRGPV SS S SS+++  A      P T  LT   PAP  ++
Sbjct: 59  SKFKKVISILNRTGHARFRRGPVSSSDSPSSSTSSVA------PQTHALT---PAPVTSL 109

Query: 117 APSTA-----SYVQSQPHSLTLDFTKPSLFSGNVKSTEL----EFSKDSFCVS------S 161
               A     S+VQ Q  SLTLDFTKP+L S N  S+++    +FSK+SF +S      +
Sbjct: 110 PVPPAAPPPASFVQRQ--SLTLDFTKPNLVSSNPVSSDVVSTSQFSKESFGLSQPMSSAT 167

Query: 162 NSSFMSSAITGDGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDL 221
           NSSFMSS ITGDGSVSNGKQG SS+FLAP APAVSAGKPPL++   +KRC +H DHSDD+
Sbjct: 168 NSSFMSS-ITGDGSVSNGKQG-SSLFLAP-APAVSAGKPPLSSS-CRKRCHEH-DHSDDI 222

Query: 222 SGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPY 281
           SGK+S S     +CHCSKRR++RVKKTIRVPAISSKIADIP DEYSWRKYGQKPIKGSPY
Sbjct: 223 SGKYSSS----GRCHCSKRRRSRVKKTIRVPAISSKIADIPADEYSWRKYGQKPIKGSPY 278

Query: 282 PRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFEST 341
           PRGYYKCS+MRGCPARKHVERA DDP MLIVTYEGEH HSQ AMQE     GVGLVFEST
Sbjct: 279 PRGYYKCSSMRGCPARKHVERASDDPAMLIVTYEGEHSHSQVAMQEMIPHGGVGLVFEST 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2046653	321	WRKY17 "WRKY DNA-binding prote	0.618	0.657	0.654	2.5e-102
TAIR|locus:2125239	325	WRKY11 "WRKY DNA-binding prote	0.909	0.953	0.587	3.7e-96
TAIR|locus:2135967	353	WRKY7 "WRKY DNA-binding protei	0.348	0.337	0.607	1.4e-54
TAIR|locus:2058568	317	WRKY15 "WRKY DNA-binding prote	0.366	0.394	0.625	3.7e-50
TAIR|locus:2064377	380	WRKY21 "WRKY DNA-binding prote	0.413	0.371	0.571	8.6e-47
TAIR|locus:2084943	330	WRKY39 "WRKY DNA-binding prote	0.304	0.315	0.735	2.3e-46
TAIR|locus:2148815	330	WRKY74 "WRKY DNA-binding prote	0.343	0.354	0.669	1.1e-44
UNIPROTKB|Q32SG4	397	Q32SG4 "Protein WRKY1" [Zea ma	0.296	0.254	0.683	7.8e-39
TAIR|locus:2044777	427	WRKY35 "WRKY DNA-binding prote	0.263	0.210	0.541	3.8e-24
TAIR|locus:2029919	259	WRKY65 "WRKY DNA-binding prote	0.319	0.420	0.479	8.7e-24

TAIR|locus:2046653 WRKY17 "WRKY DNA-binding protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
 Identities = 146/223 (65%), Positives = 167/223 (74%)

Query:   122 SYVQSQPHSLTLDFTKPSLFSGNVKSTEL-EXXXXXXXXXXXXXXXXXAITGDGSVSNGK 180
             S+VQ+   S+TLDFT+PS+F    KS+E+ E                 AITGDGSVS G 
Sbjct:   106 SFVQANQQSVTLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSKG- 164

Query:   181 QGGSSIFLAPQAPAV---SAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHC 237
                SSIFLAP APAV   S+GKPPL+  PY+KRC +H DHS+  SGK SGS  GN KCHC
Sbjct:   165 ---SSIFLAP-APAVPVTSSGKPPLSGLPYRKRCFEH-DHSEGFSGKISGS--GNGKCHC 217

Query:   238 SKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPAR 297
              K RKNR+K+T+RVPA+S+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPAR
Sbjct:   218 KKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPAR 277

Query:   298 KHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAGVGLVFES 340
             KHVERA DD TMLIVTYEGEHRH Q+ MQE+  P+  GLVF S
Sbjct:   278 KHVERALDDSTMLIVTYEGEHRHHQSTMQEHVTPSVSGLVFGS 320

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2125239 WRKY11 "WRKY DNA-binding protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 195/332 (58%), Positives = 224/332 (67%)

Query:    13 MEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKFKKVISLLNRTGH 71
             ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKFK VISLLNRTGH
Sbjct:    11 IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKFKTVISLLNRTGH 70

Query:    72 ARFRRGPVHXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSL 131
             ARFRRGPVH                   P                       +   P S+
Sbjct:    71 ARFRRGPVHSTSSAASQKLQSQIVKNTQPEAPIVRTTTNH----------PQIVPPPSSV 120

Query:   132 TLDFTKPSLFSGNVKSTELEXXXXXXXXXXXXXXXXXAITGDGSVSNGKQGGSSIFLA-- 189
             TLDF+KPS+F    KS ELE                 AITGDGSVSNGK     IFLA  
Sbjct:   121 TLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNGK-----IFLASA 175

Query:   190 PQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTI 249
             P  P  S+GKPPLA  PY+KRC +H +HS+  SGK SGS  G  KCHC K RKNR+K+T+
Sbjct:   176 PLQPVNSSGKPPLAGHPYRKRCLEH-EHSESFSGKVSGSAYG--KCHCKKSRKNRMKRTV 232

Query:   250 RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTM 309
             RVPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPARKHVERA DDP M
Sbjct:   233 RVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAM 292

Query:   310 LIVTYEGEHRHSQAAMQENAAPAGVG-LVFES 340
             LIVTYEGEHRH+Q+AMQEN + +G+  LVF S
Sbjct:   293 LIVTYEGEHRHNQSAMQENISSSGINDLVFAS 324

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2135967 WRKY7 "WRKY DNA-binding protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 82/135 (60%), Positives = 102/135 (75%)

Query:   187 FLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVK 246
             F  P   + S GKPPL++   K+RC                ++S +++CHCSK+RK+RVK
Sbjct:   221 FTNPSQLSGSRGKPPLSSASLKRRC----------------NSSPSSRCHCSKKRKSRVK 264

Query:   247 KTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDD 306
             + IRVPA+SSK+ADIP DE+SWRKYGQKPIKGSP+PRGYYKCS++RGCPARKHVERA DD
Sbjct:   265 RVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDD 324

Query:   307 PTMLIVTYEGEHRHS 321
               MLIVTYEG+H H+
Sbjct:   325 AMMLIVTYEGDHNHA 339

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA;IPI

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2058568 WRKY15 "WRKY DNA-binding protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 80/128 (62%), Positives = 105/128 (82%)

Query:   215 KDHSDDL-SGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQ 273
             K +S++L +GK + S S + +CHCSK+RK + ++ IRVPAIS+K++D+PPD+YSWRKYGQ
Sbjct:   192 KCNSENLLTGKCA-SASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSWRKYGQ 250

Query:   274 KPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENAAPAG 333
             KPIKGSP+PRGYYKCS++RGCPARKHVERA DD +MLIVTYEG+H HS +A  + A  A 
Sbjct:   251 KPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHSLSAA-DLAGAAV 309

Query:   334 VGLVFEST 341
               L+ ES+
Sbjct:   310 ADLILESS 317

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2064377 WRKY21 "WRKY DNA-binding protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 88/154 (57%), Positives = 108/154 (70%)

Query:   173 DGSVSNGKQGGSSIFLAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSGN 232
             DGSV+N +   S  F  P     S  +  L +   K++C    D    L     GS+S  
Sbjct:   236 DGSVANIEGKNSFHFGVPS----STDQNSLHS---KRKCPLKGDEHGSLK---CGSSS-- 283

Query:   233 NKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMR 292
              +CHC+K+RK+RV+++IRVPAIS+K+ADIPPD+YSWRKYGQKPIKGSPYPRGYYKCS+MR
Sbjct:   284 -RCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMR 342

Query:   293 GCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQ 326
             GCPARKHVER  +DP MLIVTYE EH H +   Q
Sbjct:   343 GCPARKHVERCLEDPAMLIVTYEAEHNHPKLPSQ 376

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2084943 WRKY39 "WRKY DNA-binding protein 39" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 78/106 (73%), Positives = 93/106 (87%)

Query:   226 SGSTS-GN-NKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPR 283
             SGS   G+ +KCHCSK+RK RVK++I+VPAIS+KIADIPPDEYSWRKYGQKPIKGSP+PR
Sbjct:   223 SGSLKCGSRSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPR 282

Query:   284 GYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 329
             GYYKCS++RGCPARKHVER  D+ +MLIVTYEGEH HS+    ++A
Sbjct:   283 GYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNHSRILSSQSA 328

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2148815 WRKY74 "WRKY DNA-binding protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
 Identities = 79/118 (66%), Positives = 94/118 (79%)

Query:   213 DH-KDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKY 271
             DH   HS   S   S      +KCHCSK+RK RVK++I+VPAIS+KIADIPPDEYSWRKY
Sbjct:   211 DHISQHSRRTSCSGSLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKY 270

Query:   272 GQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 329
             GQKPIKGSP+PRGYYKCS++RGCPARKHVER  ++ +MLIVTYEGEH HS+    ++A
Sbjct:   271 GQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHSRILSSQSA 328

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

UNIPROTKB|Q32SG4 Q32SG4 "Protein WRKY1" [Zea mays (taxid:4577)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 69/101 (68%), Positives = 89/101 (88%)

Query:   226 SGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGY 285
             +G  +  ++CHCSK+RK R++++I+VPAIS+K+ADIP DE+SWRKYGQKPIKGSP+PRGY
Sbjct:   295 TGRCATGSRCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPHPRGY 354

Query:   286 YKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQ 326
             YKCS++RGCPARKHVER  DDP+MLIVTYEG+H H++   Q
Sbjct:   355 YKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVLAQ 395

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2044777 WRKY35 "WRKY DNA-binding protein 35" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 52/96 (54%), Positives = 69/96 (71%)

Query:   239 KRRKNRVKKTIRVPA---ISSKIAD--IPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRG 293
             KRRK++ KK + +PA   ++S+ +   +P D ++WRKYGQKPIKGSPYPRGYY+CS+ +G
Sbjct:   186 KRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKG 245

Query:   294 CPARKHVERAPDDPTMLIVTYEGEHRHSQAAMQENA 329
             C ARK VER+  DP ML++TY  EH H     Q NA
Sbjct:   246 CSARKQVERSRTDPNMLVITYTSEHNHPWPT-QRNA 280

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2029919 WRKY65 "WRKY DNA-binding protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 59/123 (47%), Positives = 76/123 (61%)

Query:   212 QDHKDH-SDDLSGKFSGSTSGNN------KCHCSKRRKNRV-KKTIRVPAI----SSKIA 259
             + + DH S   +G  S ++S  N        H  KR +  V K+ + VP      S    
Sbjct:     9 RSYNDHESSQETGPESPNSSTFNGMKALISSHSPKRSRRSVEKRVVNVPMKEMEGSRHKG 68

Query:   260 DI-PP-DEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGE 317
             D  PP D ++WRKYGQKPIKGSPYPRGYY+CS+ +GCPARK VER+ DDPTM+++TY  E
Sbjct:    69 DTTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSE 128

Query:   318 HRH 320
             H H
Sbjct:   129 HNH 131

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SV15	WRK11_ARATH	No assigned EC number	0.6453	0.9384	0.9846	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
smart00774	59	smart00774, WRKY, DNA binding domain	2e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	4e-34
pfam10533	47	pfam10533, Plant_zn_clust, Plant zinc cluster doma	2e-16

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  122 bits (309), Expect = 2e-35
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 262 PPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH 320
             D Y WRKYGQK IKGSPYPR YY+C+  +GCPA+K V+R+ DDP+++ VTYEGEH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  119 bits (300), Expect = 4e-34
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 262 PPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHS 321
             D Y+WRKYGQKP+KGSP+PR YY+C T  GCP +K VER+ DDP ++ +TYEGEH H 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRC-TSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 322 Q 322
           +
Sbjct: 60  K 60

Length = 60

>gnl|CDD|192617 pfam10533, Plant_zn_clust, Plant zinc cluster domain

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 6/53 (11%)

Query: 208 KKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIAD 260
           KKRC +  D      GK + S+SG  +CHCSK+RK+RVK+TIRVPAISSKIAD
Sbjct: 1   KKRCSEANDSE----GKCAASSSG--RCHCSKKRKSRVKRTIRVPAISSKIAD 47

This zinc binding domain was identified by Babu and colleagues and found associated with the WRKY domain pfam03106. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
PF10533	47	Plant_zn_clust: Plant zinc cluster domain; InterPr	99.4
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	91.48
PF05344	65	DUF746: Domain of Unknown Function (DUF746); Inter	86.22
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	84.68

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=2.3e-31  Score=201.90  Aligned_cols=59  Identities=63%  Similarity=1.265  Sum_probs=56.5

Q ss_pred             CCCcccccccCCccCCCCCCCccccccCCCCCCCcccceeecCCCCCeEEEEEecCCCC
Q 019404          262 PPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRH  320 (341)
Q Consensus       262 ~~DGy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH  320 (341)
                      ++|||.|||||||.|+|+++||+||||++.+||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999985589999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=7.7e-32  Score=204.74  Aligned_cols=60  Identities=65%  Similarity=1.315  Sum_probs=51.8

Q ss_pred             CCCcccccccCCccCCCCCCCccccccCCCCCCCcccceeecCCCCCeEEEEEecCCCCCC
Q 019404          262 PPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQ  322 (341)
Q Consensus       262 ~~DGy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH~~  322 (341)
                      ++|||+|||||||.|+|++|||+||||+ ..+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt-~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCT-HPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEE-CTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecc-ccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            4799999999999999999999999997 56999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF10533 Plant_zn_clust: Plant zinc cluster domain; InterPro: IPR018872 This zinc binding domain is found associated with the WRKY domain IPR003657 from INTERPRO []

Probab=99.40  E-value=1.9e-13  Score=99.66  Aligned_cols=47  Identities=66%  Similarity=1.093  Sum_probs=39.3

Q ss_pred             CCCCCCCCCCCCCCCCcccCCCCCCCccccccccccccceEEEEecccCCccC
Q 019404          208 KKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRKNRVKKTIRVPAISSKIAD  260 (341)
Q Consensus       208 kr~c~~~~~~s~~~sgk~~g~~s~~~rch~sKrRk~r~kr~~rvp~~s~~~~d  260 (341)
                      |++|++++    +.+|+|.+  +++++|||+||||.|+||+|||||||++++|
T Consensus         1 krkC~~~~----~~~~~~~~--sssgrCHCsKkRK~RvKR~irVPAiS~K~AD   47 (47)
T PF10533_consen    1 KRKCHSHN----DSSGKCKC--SSSGRCHCSKKRKSRVKRTIRVPAISSKIAD   47 (47)
T ss_pred             CCcccccC----cccCcccc--CCCCcccCCCcccccceeeEEeecccccccC
Confidence            68999873    34466543  6789999999999999999999999999875

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.48  E-value=0.074  Score=38.37  Aligned_cols=49  Identities=31%  Similarity=0.552  Sum_probs=24.6

Q ss_pred             CCCcccccccCCccCCCCCCCccccccCCC--CCCCcccceeecCCCCCeEEEEEecCCCC
Q 019404          262 PPDEYSWRKYGQKPIKGSPYPRGYYKCSTM--RGCPARKHVERAPDDPTMLIVTYEGEHRH  320 (341)
Q Consensus       262 ~~DGy~WRKYGQK~Ikgs~~pRsYYrCs~~--~gC~A~K~Ver~~dDp~~~~vtY~G~HnH  320 (341)
                      .-|||.-+++...      ....|++|+..  .+|+|+=.+.  .++ ..+ +...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~~~-~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-GRV-VRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-TEE-EE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-CEE-EECCCccCC
Confidence            3588887765555      34589999852  3799988777  333 334 345699999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons

Probab=86.22  E-value=0.75  Score=36.27  Aligned_cols=52  Identities=29%  Similarity=0.373  Sum_probs=37.8

Q ss_pred             HHHHHHHHhcCCCCCC------CCcchhhHHHHHHhhhhhhhhccccCc--cccccCCCCC
Q 019404           29 SMEHLIRLMSHHQSSN------HVDCSDLTDLTVSKFKKVISLLNRTGH--ARFRRGPVHS   81 (341)
Q Consensus        29 S~e~li~lLSq~~~q~------q~d~~~itd~AVskFKkVISLL~RTGH--ARFRr~P~~~   81 (341)
                      .+++||++||++-.-.      ..| ..++..-|..|++-+=.||.+||  +|+|-|=.++
T Consensus         2 ~~~~fIrlLs~~~s~~~Aa~~lG~~-~~~v~~wv~~fR~wll~LDPSG~~E~RVRLg~r~a   61 (65)
T PF05344_consen    2 KARAFIRLLSQQISVAQAADRLGTD-PGTVRRWVRMFRQWLLQLDPSGHWEARVRLGVRPA   61 (65)
T ss_pred             cHHHHHHHhcccccHHHHHHHHCcC-HHHHHHHHHHHHHHHHHcCCCCChHHHhhcCCCCC
Confidence            4789999999873221      112 33456789999999999999998  7888765433

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=84.68  E-value=1.2  Score=34.87  Aligned_cols=31  Identities=32%  Similarity=0.540  Sum_probs=26.0

Q ss_pred             CCCCcccceeecCCCCCeEEEEEecCCCCCCc
Q 019404          292 RGCPARKHVERAPDDPTMLIVTYEGEHRHSQA  323 (341)
Q Consensus       292 ~gC~A~K~Ver~~dDp~~~~vtY~G~HnH~~~  323 (341)
                      .||+|+=.|.+.. |....++.+..+|||+-.
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            4899999998876 667777889999999853

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	341
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-17
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-17

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 250 RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTM 309
           R+   +  + DI  D Y WRKYGQK +KGSPYPR YY+CS+  GCP +KHVER+  D  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKL 60
Query: 310 LIVTYEGEHRH 320
           LI TYEG+H H
Sbjct: 61  LITTYEGKHDH 71

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 259 ADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEH 318
            D+  D Y WRKYGQK +KG+PYPR YYKC+T  GC  RKHVERA  DP  ++ TYEG+H
Sbjct: 14  VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVTTYEGKH 72
Query: 319 RHSQAA 324
            H   A
Sbjct: 73  NHDLPA 78
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	8e-36
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  123 bits (311), Expect = 8e-36
 Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 250 RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTM 309
           R+   +  + DI  D Y WRKYGQK +KGSPYPR YY+CS+  GCP +KHVER+  D  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKL 60

Query: 310 LIVTYEGEHRH 320
           LI TYEG+H H
Sbjct: 61  LITTYEGKHDH 71

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  121 bits (304), Expect = 1e-34
 Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 250 RVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTM 309
                ++   D+  D Y WRKYGQK +KG+PYPR YYKC T  GC  RKHVERA  DP  
Sbjct: 5   SSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKC-TTPGCGVRKHVERAATDPKA 63

Query: 310 LIVTYEGEHRHSQAA 324
           ++ TYEG+H H   A
Sbjct: 64  VVTTYEGKHNHDLPA 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 49/401 (12%), Positives = 98/401 (24%), Gaps = 153/401 (38%)

Query: 10  KRMMEDQ---------TAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFK 60
           ++ +E+          + I+    Q        I       + N V         VS+ +
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV----FAKYNVSRLQ 135

Query: 61  KVISLLNRTGHARFRRGP---VHSSPSS--SSASAPAAAASG-----------------N 98
             + L  R      R      +     S  +  +     +                   N
Sbjct: 136 PYLKL--RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 99  SPHT-----QTL--------------TLTPPAPTMAVAPSTASYVQSQPHS---LTLDFT 136
           SP T     Q L              +        ++       ++S+P+    L L   
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-- 251

Query: 137 KPSLFSGNVKSTELEFSKDSF---C---V----SSNSSFMSSAITGDGSVSNGKQG---- 182
                  NV++ +     ++F   C   +       + F+S+A T   S+ +        
Sbjct: 252 -------NVQNAKA---WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 183 -GSSIF----------LAPQAPAVSAGKPPLAAQPYKKRCQDHKDHSDDLSGKFSGSTSG 231
              S+           L  +    +    P       +  +D     D+           
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDNW---------- 347

Query: 232 NNKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTM 291
                    +     K   +  I S +  + P EY  RK              + + S  
Sbjct: 348 ---------KHVNCDKLTTI--IESSLNVLEPAEY--RKM-------------FDRLSVF 381

Query: 292 RGCPARKHVERAPDD---PTMLIVTY--EGEHRHSQAAMQE 327
                       P     PT+L+     +         + +
Sbjct: 382 ------------PPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.98

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=7.1e-34  Score=224.16  Aligned_cols=69  Identities=57%  Similarity=1.139  Sum_probs=64.1

Q ss_pred             cCCccCCCCCcccccccCCccCCCCCCCccccccCCCCCCCcccceeecCCCCCeEEEEEecCCCCCCcc
Q 019404          255 SSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAA  324 (341)
Q Consensus       255 s~~~~d~~~DGy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH~~~~  324 (341)
                      +....++++|||+|||||||.|||++|||+||||+ ..||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         7 t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt-~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            7 TQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEEC-STTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             ecCCCCcCCCCchhhhCcccccCCCCCceeEeEcC-CCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            34567899999999999999999999999999998 5899999999999999999999999999999764

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.98  E-value=1.5e-33  Score=223.31  Aligned_cols=73  Identities=52%  Similarity=1.013  Sum_probs=65.2

Q ss_pred             EecccCCccCCCCCcccccccCCccCCCCCCCccccccCCCCCCCcccceeecCCCCCeEEEEEecCCCCCCcc
Q 019404          251 VPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAA  324 (341)
Q Consensus       251 vp~~s~~~~d~~~DGy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH~~~~  324 (341)
                      |...+....++++|||+|||||||.|||++|||+||||+ .+||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         6 ~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt-~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            6 SGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             --CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEE-CSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             EEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecC-cCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            334445567899999999999999999999999999998 5999999999999999999999999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	4e-28

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  102 bits (256), Expect = 4e-28
 Identities = 39/66 (59%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 259 ADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEH 318
            D+  D Y WRKYGQK +KG+PYPR YYKC T  GC  RKHVERA  DP  ++ TYEG+H
Sbjct: 7   VDLLDDGYRWRKYGQKVVKGNPYPRSYYKC-TTPGCGVRKHVERAATDPKAVVTTYEGKH 65

Query: 319 RHSQAA 324
            H   A
Sbjct: 66  NHDLPA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.98

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=8.9e-34  Score=219.05  Aligned_cols=67  Identities=57%  Similarity=1.110  Sum_probs=62.7

Q ss_pred             CccCCCCCcccccccCCccCCCCCCCccccccCCCCCCCcccceeecCCCCCeEEEEEecCCCCCCcc
Q 019404          257 KIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERAPDDPTMLIVTYEGEHRHSQAA  324 (341)
Q Consensus       257 ~~~d~~~DGy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~A~K~Ver~~dDp~~~~vtY~G~HnH~~~~  324 (341)
                      ...++++|||.|||||||.|||++|||+||||+ ..||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         5 ~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt-~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           5 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEE-CSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cccccCCCCcEecccCceeccCCCCceEEEEcc-ccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            446789999999999999999999999999998 5899999999999999999999999999998763