Citrus Sinensis ID: 019475

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHcccccccccccHHHHHHHHHHHccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHEEEccccccccccccHHHEcccccEEEEcEccccHHHHHcccEccccHEEHHHHEEHEHHccccccccHHHHHHHccccEEEEcHcccccccHHHHHHHHHHHHHHHHHcHcccccHHHHHHHHcccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRIlfdkdgnprlssfglmknsrdgksystnlaftppeymrtgrvtpesVVYSFGTMLLDllsgkhippshaldliRSKNFLLLMDSAleghfsndegTELVRLASRCLQSEARERPNAKSLVISLMSLqkeaevpsyVLLGIqhetapstkplsltplgeacsrlDLTAIHEILEgmgykddegiANELSFQMWTSQMQETlnskkhgdtafrakdfstAIDCYtqfidggtmvspTVYARRCLSYLMNDMPQEALGDAmqaqvvspdwpTALYLQAACLFSLGMEndaretlkdgtnleakknkn
Flexible Loop (DISEMBL)
MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFglmknsrdgksystnlaftppeymrtgrVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQsearerpnaKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQfidggtmvSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARetlkdgtnleakknkn
Low Complexity Region (SEG)
MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN
Disordered region (IsUnstruct)
**WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG**********************LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLAS***************LVISLMSLQKEAEVPSYVLLGIQHET******LSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTS*************TAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGM*********************
Disordered Region (DISOPRED)
MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS************************************************************E*S********************AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARET**************
Disordered Region (DISEMBL)
MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN
Disordered Region (DISPRO)
MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHE**************EACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q9FHD7	487	Probable serine/threonine	no	no	0.982	0.685	0.721	1e-144
Q944A7	512	Probable serine/threonine	no	no	0.994	0.660	0.670	1e-134
Q7XJT7	465	Probable inactive recepto	no	no	0.95	0.694	0.474	2e-88
Q06548	410	Protein kinase APK1A, chl	no	no	0.479	0.397	0.362	1e-19
Q9LFP7	493	Probable receptor-like pr	no	no	0.526	0.363	0.338	3e-19
Q8H186	389	Probable receptor-like pr	no	no	0.497	0.434	0.319	6e-19
Q9SRH7	490	Receptor-like serine/thre	no	no	0.526	0.365	0.323	1e-18
Q9SFT7	414	Serine/threonine-protein	no	no	0.452	0.371	0.347	2e-18
O48814	395	Serine/threonine-protein	no	no	0.5	0.430	0.322	2e-18
P46573	412	Protein kinase APK1B, chl	no	no	0.479	0.395	0.351	5e-18

>sp|Q9FHD7|Y5126_ARATH Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1

 Score =  511 bits (1316), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/338 (72%), Positives = 283/338 (83%), Gaps = 4/338 (1%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVAL++AQALEYC+SKGRALYHDLNAYR+LFD D NPRLS FGLMKNSRDGKS
Sbjct: 152 MKWAMRLRVALHIAQALEYCTSKGRALYHDLNAYRVLFDDDANPRLSCFGLMKNSRDGKS 211

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVTPESV+YSFGT+LLDLLSGKHIPPSHALDLIR +N  +LMDS
Sbjct: 212 YSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLMDS 271

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
            LEG FS+D+GTEL+RLASRCLQ E RERPN KSLV +++ LQK+ E+ S+ LLG+ +  
Sbjct: 272 GLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVSAMIPLQKDLEIASHQLLGVPN-- 329

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
             S    +L+PLGEAC R DLTAIHEI+E +GYKDDEG   ELSFQMWT QMQ+TL  KK
Sbjct: 330 --SATTTALSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKK 387

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
            GD+AFR KDF+ AI+CY+QFI+ GTM SPTV+AR+ L YLMNDMP+EAL +AMQAQV+S
Sbjct: 388 KGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVIS 447

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 338
           P W  A YLQA  L +LG EN+A   LKDG  LE+K+N
Sbjct: 448 PAWHIASYLQAVALSALGQENEAHTALKDGAMLESKRN 485

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q944A7|Y4523_ARATH Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1

 Score =  479 bits (1234), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/340 (67%), Positives = 271/340 (79%), Gaps = 2/340 (0%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           ++WAMRLRV  Y+A+AL+YCS++GR LYHDLNAYR+LFD+DG+PRLS FGLMKNSRDGKS
Sbjct: 169 IEWAMRLRVGYYIAEALDYCSTEGRPLYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKS 228

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLA+TPPEY+R GRVTPESV YSFGT+LLDLLSGKHIPPSHALD+IR KN +LLMDS
Sbjct: 229 YSTNLAYTPPEYLRNGRVTPESVTYSFGTVLLDLLSGKHIPPSHALDMIRGKNIILLMDS 288

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGI-QHE 179
            LEG FS +E T +V LAS+CLQ E RERPN K LV +L  LQ +++VPSYV+LGI + E
Sbjct: 289 HLEGKFSTEEATVVVELASQCLQYEPRERPNTKDLVATLAPLQTKSDVPSYVMLGIKKQE 348

Query: 180 TAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSK 239
            APST    L+PLGEACSR+DLTAIH+IL    Y+DDEG  NELSFQ WT QM++ L+++
Sbjct: 349 EAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEG-TNELSFQEWTQQMKDMLDAR 407

Query: 240 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV 299
           K GD +FR KDF TAIDCY+QFID GTMVSPTV+ RR L YL+ D P  AL DAMQAQ V
Sbjct: 408 KRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCV 467

Query: 300 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 339
            PDWPTA Y+Q+  L  L M  DA + L +   LE K+ +
Sbjct: 468 YPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQR 507

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7XJT7|SSP_ARATH Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1

 Score =  325 bits (834), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/337 (47%), Positives = 227/337 (67%), Gaps = 14/337 (4%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           M W++RLRVA ++A+AL+YC++ G A Y++L+AY++LFD+DG+  LS FGLMK   + + 
Sbjct: 143 MDWSIRLRVAYFVAEALDYCNTAGFASYNNLSAYKVLFDEDGDACLSCFGLMKEINNDQ- 201

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
                       + TG V PE+V+Y FGT+L++LLSGK IPPSHA ++I  KN   LMD 
Sbjct: 202 ------------ITTGSVNPENVIYRFGTVLVNLLSGKQIPPSHAPEMIHRKNVFKLMDP 249

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
            L+G FS DE   + +LAS+CL+ E +E PN K +V +L +LQ   E PSY ++ + ++ 
Sbjct: 250 YLKGKFSIDEANVVYKLASQCLKYEGQESPNTKEIVATLETLQTRTEAPSYEVVEMTNQE 309

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
             ++   +L+PLGEAC R+DL +IH IL   GY DD+ I  ELSF+ W  +++E  + ++
Sbjct: 310 KDASSSSNLSPLGEACLRMDLASIHSILVLAGYDDDKDII-ELSFEEWIQEVKELQDVRR 368

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
           +GD AF  +DF TAI CY+QF++  ++V P+VYARR LSYL  D P++AL D M AQ V 
Sbjct: 369 NGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVF 428

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 337
           PDWPTA YLQ+  L  L M  D+ +TLK+   LE KK
Sbjct: 429 PDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465

Probable inactive protein kinase that activates the YODA MAP kinase cascade, regulating the asymmetric first division, and thus embryo polarity. Acts as an adapter at the plasma membrane, possibly recruiting an activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q06548|APK1A_ARATH Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 19/182 (10%)

Query: 1   MKWAMRLRVALYLAQALEYC-SSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG- 58
           + W +RL+VAL  A+ L +  SS+ R +Y D     IL D + N +LS FGL K+   G 
Sbjct: 173 LSWKLRLKVALGAAKGLAFLHSSETRVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPIGD 232

Query: 59  KSY-STNL----AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP----PSHALDLI 109
           KS+ ST +     +  PEY+ TG +T +S VYSFG +LL+LLSG+       PS   +L+
Sbjct: 233 KSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGRRAVDKNRPSGERNLV 292

Query: 110 R-SKNFLL-------LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS 161
             +K +L+       ++D+ L+  +S +E  ++  L+ RCL +E + RPN   +V  L  
Sbjct: 293 EWAKPYLVNKRKIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMSEVVSHLEH 352

Query: 162 LQ 163
           +Q
Sbjct: 353 IQ 354

Possible bi-functional kinase. In vitro, it exhibits serine/threonine activity. In vivo, can phosphorylate tyrosine residues of limited substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFP7|Y5158_ARATH Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 107/201 (53%), Gaps = 22/201 (10%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKG--RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD- 57
           + W++R+++AL  A+ L +   +     +Y D     IL D D N +LS FGL K++ D 
Sbjct: 244 LPWSIRMKIALGAAKGLSFLHEEALKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPDE 303

Query: 58  GKSY-STNL----AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSG-----KHIPPS-HAL 106
           GK++ ST +     +  PEY+ TG +T +S VYSFG +LL++L+G     K+ P   H L
Sbjct: 304 GKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNL 363

Query: 107 ------DLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM 160
                  L+  + F  L+D  LEGHFS     ++ +LA++CL  + + RP    +V +L 
Sbjct: 364 VEWARPHLLDKRRFYRLLDPRLEGHFSIKGAQKVTQLAAQCLSRDPKIRPKMSDVVEALK 423

Query: 161 SLQ--KEAEVPSYVLLGIQHE 179
            L   K+    SY    +Q E
Sbjct: 424 PLPHLKDMASSSYYFQTMQAE 444

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8H186|Y3545_ARATH Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 25/194 (12%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG- 58
           + W +R++VAL  A+ L +  S   + +Y D+ A  IL D D N +LS FGL   +RDG 
Sbjct: 167 LSWILRIKVALDAAKGLAFLHSDPVKVIYRDIKASNILLDSDFNAKLSDFGL---ARDGP 223

Query: 59  ---KSYSTN-----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHAL 106
              +SY +        +  PEY+ TG +   S VYSFG +LL+LL G+    H  P+   
Sbjct: 224 MGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAKEQ 283

Query: 107 DLI--------RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS 158
           +L+          +  LL++D+ L   +  +    L  +A +CL  E + RP    +V +
Sbjct: 284 NLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVVRA 343

Query: 159 LMSLQKEAEVPSYV 172
           L+ LQ     P+ V
Sbjct: 344 LVQLQDSVVKPANV 357

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SRH7|Y3130_ARATH Receptor-like serine/threonine-protein kinase At3g01300 OS=Arabidopsis thaliana GN=At3g01300 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 22/201 (10%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKG--RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD- 57
           + W++R+++AL  A+ L +   +     +Y D     IL D + N +LS FGL K++ D 
Sbjct: 238 LPWSIRMKIALGAAKGLSFLHEEALKPVIYRDFKTSNILLDGEYNAKLSDFGLAKDAPDE 297

Query: 58  GKSYSTN-----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSG-----KHIPPS-HAL 106
           GK++ +        +  PEY+ TG +T +S VYSFG +LL++L+G     K+ P   H L
Sbjct: 298 GKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNL 357

Query: 107 ------DLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM 160
                  L+  + F  L+D  LEGHFS     ++ +LA++CL  +++ RP    +V  L 
Sbjct: 358 VEWARPHLLDKRRFYRLLDPRLEGHFSVKGAQKVTQLAAQCLSRDSKIRPKMSEVVEVLK 417

Query: 161 SLQ--KEAEVPSYVLLGIQHE 179
            L   K+    SY    +Q E
Sbjct: 418 PLPHLKDMASASYYFQTMQAE 438

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SFT7|Y3707_ARATH Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 91/184 (49%), Gaps = 30/184 (16%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGR--ALYHDLNAYRILFDKDGNPRLSSFGLMK--NSR 56
           + W  R+R+AL  A  LEY   K     +Y DL A  IL D + N +LS FGL K     
Sbjct: 175 LDWDTRIRIALGAAMGLEYLHDKANPPVIYRDLKAANILLDGEFNAKLSDFGLAKLGPVG 234

Query: 57  DGKSYSTNL----AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK 112
           D +  S+ +     +  PEY RTG++T +S VYSFG +LL+L++G+ +     +D  R K
Sbjct: 235 DKQHVSSRVMGTYGYCAPEYQRTGQLTTKSDVYSFGVVLLELITGRRV-----IDTTRPK 289

Query: 113 N-----------------FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
           +                 F  L D +LEG F      + V +A+ CLQ EA  RP    +
Sbjct: 290 DEQNLVTWAQPVFKEPSRFPELADPSLEGVFPEKALNQAVAVAAMCLQEEATVRPLMSDV 349

Query: 156 VISL 159
           V +L
Sbjct: 350 VTAL 353

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O48814|BIK1_ARATH Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 19/189 (10%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK 59
           + W +R+ VAL  A+ L +  S   + +Y D+ A  IL D D N +LS FGL ++   G 
Sbjct: 172 LPWFLRVNVALDAAKGLAFLHSDPVKVIYRDIKASNILLDADYNAKLSDFGLARDGPMGD 231

Query: 60  -SYSTN-----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLI 109
            SY +        +  PEYM +G +   S VYSFG +LL++LSGK    H  P+   +L+
Sbjct: 232 LSYVSTRVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLLEILSGKRALDHNRPAKEENLV 291

Query: 110 --------RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS 161
                     +  LL++D+ L+  +  +E   +  +A +CL  E + RP    +V +L  
Sbjct: 292 DWARPYLTSKRKVLLIVDNRLDTQYLPEEAVRMASVAVQCLSFEPKSRPTMDQVVRALQQ 351

Query: 162 LQKEAEVPS 170
           LQ     PS
Sbjct: 352 LQDNLGKPS 360

Required to activate the resistance responses to necrotrophic pathogens. Phosphorylates FLS2 and BAK1.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P46573|APK1B_ARATH Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 19/182 (10%)

Query: 1   MKWAMRLRVALYLAQALEYC-SSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG- 58
           + W +RL+VAL  A+ L +  +++   +Y D     IL D + N +LS FGL K+   G 
Sbjct: 174 LSWTLRLKVALGAAKGLAFLHNAETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGD 233

Query: 59  KSY-STNL----AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSG-----KHIPPSH---- 104
           KS+ ST +     +  PEY+ TG +T +S VYS+G +LL++LSG     K+ PP      
Sbjct: 234 KSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLV 293

Query: 105 --ALDLIRSKNFLL-LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS 161
             A  L+ +K  L  ++D+ L+  +S +E  ++  LA RCL  E + RPN   +V  L  
Sbjct: 294 EWARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLEH 353

Query: 162 LQ 163
           +Q
Sbjct: 354 IQ 355

Possible bi-functional kinase. In vitro, it exhibits serine/threonine activity. In vivo, can phosphorylate tyrosine residues of limited substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
224087605	491	predicted protein [Populus trichocarpa]	1.0	0.692	0.905	0.0
224138934	491	predicted protein [Populus trichocarpa]	1.0	0.692	0.905	0.0
356504321	491	PREDICTED: probable serine/threonine-pro	1.0	0.692	0.897	0.0
225440554	491	PREDICTED: probable serine/threonine-pro	1.0	0.692	0.888	0.0
255573947	491	receptor protein kinase, putative [Ricin	1.0	0.692	0.891	1e-180
449506466	491	PREDICTED: probable serine/threonine-pro	1.0	0.692	0.873	1e-177
449460335	491	PREDICTED: probable serine/threonine-pro	1.0	0.692	0.870	1e-176
297745973	490	unnamed protein product [Vitis vinifera]	0.997	0.691	0.867	1e-175
356496122	490	PREDICTED: LOW QUALITY PROTEIN: probable	1.0	0.693	0.867	1e-175
359478579	512	PREDICTED: probable serine/threonine-pro	0.997	0.662	0.867	1e-175

>gi|224087605|ref|XP_002308195.1| predicted protein [Populus trichocarpa] gi|222854171|gb|EEE91718.1| predicted protein [Populus trichocarpa]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/340 (90%), Positives = 324/340 (95%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVALYLAQALEYC SKGRALYHDLNAYRILFDKDGNPRLS FGLMKNSRDGKS
Sbjct: 152 MKWAMRLRVALYLAQALEYCCSKGRALYHDLNAYRILFDKDGNPRLSCFGLMKNSRDGKS 211

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVTPESVVYSFGT+LLDLLSGKHIPPSHALDLIR KNFL+LMDS
Sbjct: 212 YSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDS 271

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
           ALEGHFS D+GTELVRLASRCLQ EARERPNAKSLV +L+SLQKE EVPSYVL+GI+ ET
Sbjct: 272 ALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVTALLSLQKETEVPSYVLMGIRQET 331

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
           A ST+PLSLTP GEAC R DLTAIHEILE +GYKDDEGIANELSFQMWT+QMQETLNSKK
Sbjct: 332 ASSTQPLSLTPFGEACLRTDLTAIHEILEKIGYKDDEGIANELSFQMWTNQMQETLNSKK 391

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
           HGDTAFRAKDF+TAIDCYTQFIDGGTMVSPTVYARRCLSYLM+DMPQEALGDAMQAQVVS
Sbjct: 392 HGDTAFRAKDFATAIDCYTQFIDGGTMVSPTVYARRCLSYLMSDMPQEALGDAMQAQVVS 451

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           P+W TA YLQAACLFSLGME DA+ETLKDGTNLEAK+NKN
Sbjct: 452 PEWSTASYLQAACLFSLGMETDAQETLKDGTNLEAKRNKN 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138934|ref|XP_002322938.1| predicted protein [Populus trichocarpa] gi|222867568|gb|EEF04699.1| predicted protein [Populus trichocarpa]

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/340 (90%), Positives = 323/340 (95%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVALYLAQALEYC SKGRALYHDLNAYRILFDKDGNPRLS FGLMKNSRDGKS
Sbjct: 152 MKWAMRLRVALYLAQALEYCGSKGRALYHDLNAYRILFDKDGNPRLSCFGLMKNSRDGKS 211

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVTPESVVYSFGT+LLDLLSGKHIPPSHALDLIR KNFL+LMDS
Sbjct: 212 YSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDS 271

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
           ALEGHFS D+GTELVRLASRCLQ EARERPNAKSLV +LMSLQKE EVPSYVL+GI+ ET
Sbjct: 272 ALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVTALMSLQKETEVPSYVLMGIREET 331

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
           A ST PLSLTP GEAC R+DLTAIHEILE +GYKDDEGIANELSFQMWT+QMQETLNSKK
Sbjct: 332 ASSTLPLSLTPFGEACLRMDLTAIHEILEKIGYKDDEGIANELSFQMWTNQMQETLNSKK 391

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
           HGD AFRAKDF+TAIDCYTQFIDGGTMVSPTVYARRCLSYLM+DMPQEALGDAMQAQVVS
Sbjct: 392 HGDAAFRAKDFATAIDCYTQFIDGGTMVSPTVYARRCLSYLMSDMPQEALGDAMQAQVVS 451

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           PDW TA YLQAACLFSLGME DA+ETLKDGT+LEAK+NKN
Sbjct: 452 PDWSTASYLQAACLFSLGMETDAQETLKDGTHLEAKRNKN 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504321|ref|XP_003520945.1| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Glycine max]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/340 (89%), Positives = 320/340 (94%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVA YLAQALEYC+SKGR LYHDLNAYRILFD+D NPRLS FGLMKNSRDGKS
Sbjct: 152 MKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDANPRLSCFGLMKNSRDGKS 211

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVTPESVVYSFGT+LLDLLSGKHIPPSHALDLIR KNFL+LMDS
Sbjct: 212 YSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDS 271

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
           ALEGHFS D+GTELVRLASRCLQ EARERPNAKSLV SL+SLQKE EVPSYVL+G+Q ET
Sbjct: 272 ALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLLSLQKETEVPSYVLMGLQQET 331

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
           A S K LSLTP GEAC RLDLTAIHEILE  GYKDDEGIANELSFQ+WTSQMQETLN KK
Sbjct: 332 ASSAKQLSLTPFGEACLRLDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKK 391

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
           HGDTAFRAKDF TAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM QEALGDAMQAQVVS
Sbjct: 392 HGDTAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMAQEALGDAMQAQVVS 451

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           P+WPT+LYLQAACLFSLGMENDA+ETLKDGTN+EA+KNKN
Sbjct: 452 PEWPTSLYLQAACLFSLGMENDAQETLKDGTNMEARKNKN 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440554|ref|XP_002276280.1| PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera] gi|297740276|emb|CBI30458.3| unnamed protein product [Vitis vinifera]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/340 (88%), Positives = 322/340 (94%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYR+LFD+DGNPRLS FGLMKNSRDGKS
Sbjct: 152 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGKS 211

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVTPESVVYSFGT+LLDLLSGKHIPPSHALDLIR KNFL+LMDS
Sbjct: 212 YSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDS 271

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
            LEGHFSND+GTELVRLASRCLQ EARERPNAKSLV +LMSLQKE EVPSY+L+GI H+T
Sbjct: 272 CLEGHFSNDDGTELVRLASRCLQYEARERPNAKSLVTALMSLQKETEVPSYILMGIAHDT 331

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
           A   +PLSLTP GEAC R+DLTAIHEIL+ +GYKDDEGIANELSFQMWT+QMQETLNSKK
Sbjct: 332 ASPAEPLSLTPFGEACLRMDLTAIHEILDKIGYKDDEGIANELSFQMWTNQMQETLNSKK 391

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
           HGDTAFRAKDF+TAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS
Sbjct: 392 HGDTAFRAKDFTTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 451

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           P+W TA YLQAA LFSLGM+ DA+ETLKDGTNLE KK+KN
Sbjct: 452 PEWATAFYLQAAALFSLGMDTDAQETLKDGTNLEVKKSKN 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573947|ref|XP_002527892.1| receptor protein kinase, putative [Ricinus communis] gi|223532743|gb|EEF34523.1| receptor protein kinase, putative [Ricinus communis]

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 303/340 (89%), Positives = 320/340 (94%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYR+LFDKD +PRLS FGLMKNSRDGKS
Sbjct: 152 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDKDADPRLSCFGLMKNSRDGKS 211

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVTPESVVYSFGT+LLDLLSGKHIPPSHALDLI+ KNF +LMDS
Sbjct: 212 YSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIKGKNFPMLMDS 271

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
           ALEG FS D+GTELVRLASRCLQ EARERPNAKSLV SL+SLQKE EVPSYVL+ I HET
Sbjct: 272 ALEGRFSKDDGTELVRLASRCLQYEARERPNAKSLVTSLLSLQKETEVPSYVLMDIPHET 331

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
             ST+ LSLTP GEAC R+DLTAIHEILE +GYKDDEGIANELSFQMWTSQMQETLNSKK
Sbjct: 332 GSSTQQLSLTPFGEACLRVDLTAIHEILEKLGYKDDEGIANELSFQMWTSQMQETLNSKK 391

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
           HGDTAFRAKDF+TAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS
Sbjct: 392 HGDTAFRAKDFATAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 451

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           P+WPTA YLQAACLFSLGME DA+ETLKDGT LEAK+NK+
Sbjct: 452 PEWPTASYLQAACLFSLGMETDAQETLKDGTKLEAKRNKS 491

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506466|ref|XP_004162757.1| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Cucumis sativus]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/340 (87%), Positives = 316/340 (92%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVALYL+QALEYCS KGRALYHDLNAYRILFD+DGNPRLS FGLMKNSRDGKS
Sbjct: 152 MKWAMRLRVALYLSQALEYCSGKGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKS 211

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVTPESVVYS+GT+LLDLLSGKHIPPSHALDLIR KNFL+LMDS
Sbjct: 212 YSTNLAFTPPEYLRTGRVTPESVVYSYGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDS 271

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
           ALEGHFSND+GTELVRLASRCLQ EARERPNAKSLV +LM LQK+ EVPSYVL+GI  E 
Sbjct: 272 ALEGHFSNDDGTELVRLASRCLQYEARERPNAKSLVTALMPLQKDTEVPSYVLMGITPEN 331

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
           A ST+PLSLTP GEAC R DLTAIHE+L+  GYKDDEGIANELSFQMWTSQMQETLNSKK
Sbjct: 332 ATSTQPLSLTPFGEACLRKDLTAIHEMLDKNGYKDDEGIANELSFQMWTSQMQETLNSKK 391

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
           HGDTAFRA+DF+TAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM QEALGDAMQAQ +S
Sbjct: 392 HGDTAFRARDFATAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMGQEALGDAMQAQAIS 451

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           P+W TA YLQA CLFSLGMENDA+E LK+GT  EAKKNKN
Sbjct: 452 PEWATAFYLQATCLFSLGMENDAQEALKEGTKFEAKKNKN 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460335|ref|XP_004147901.1| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Cucumis sativus]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/340 (87%), Positives = 315/340 (92%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVALYL+QALEYCS KGRALYHDLNAYRILFD+DGNPRLS FGLMKNSRDGKS
Sbjct: 152 MKWAMRLRVALYLSQALEYCSGKGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKS 211

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVTPESVVYS+GT+LLDLLSGKHIPPSHALDLIR KNFL+LMDS
Sbjct: 212 YSTNLAFTPPEYLRTGRVTPESVVYSYGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDS 271

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
           ALEGHFSND+GTELVRLASRCLQ EARERPNAKSLV +LM LQK+ EV SYVL+GI  E 
Sbjct: 272 ALEGHFSNDDGTELVRLASRCLQYEARERPNAKSLVTALMPLQKDTEVLSYVLMGITPEN 331

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
           A ST+PLSLTP GEAC R DLTAIHE+L+  GYKDDEGIANELSFQMWTSQMQETLNSKK
Sbjct: 332 ATSTQPLSLTPFGEACLRKDLTAIHEMLDKNGYKDDEGIANELSFQMWTSQMQETLNSKK 391

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
           HGDTAFRA+DF+TAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM QEALGDAMQAQ +S
Sbjct: 392 HGDTAFRARDFATAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMGQEALGDAMQAQAIS 451

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           P+W TA YLQA CLFSLGMENDA+E LK+GT  EAKKNKN
Sbjct: 452 PEWATAFYLQATCLFSLGMENDAQEALKEGTKFEAKKNKN 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745973|emb|CBI16029.3| unnamed protein product [Vitis vinifera]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 294/339 (86%), Positives = 315/339 (92%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYR+LFD+DGNPRLS FGLMKNSRDGKS
Sbjct: 151 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGKS 210

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVT ESVVYSFGT+LLDLLSGKHIPPSHALDLIR KNFL+LMDS
Sbjct: 211 YSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDS 270

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
            LEGHFSND+GTELVRLASRCLQ E RERPNA+SLV SL  LQKE EVPSYVL+GIQ ET
Sbjct: 271 CLEGHFSNDDGTELVRLASRCLQYEPRERPNARSLVTSLTPLQKETEVPSYVLMGIQQET 330

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
               + L LTPLGEACSR+DLTAIHEILE +GYKDDEG+ANELSFQMWT+Q+QETLNSKK
Sbjct: 331 VSPAETLPLTPLGEACSRMDLTAIHEILEKVGYKDDEGVANELSFQMWTNQIQETLNSKK 390

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
            GDTAFRAKDF+TAI+CYTQFIDGGTMVSPTV+ARRCL YLMN+MPQEALGDAMQAQVVS
Sbjct: 391 RGDTAFRAKDFTTAIECYTQFIDGGTMVSPTVFARRCLCYLMNEMPQEALGDAMQAQVVS 450

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 339
           PDW TA YLQAA LFSLGM+NDARETLKDGT LEAK+N+
Sbjct: 451 PDWSTAFYLQAAALFSLGMDNDARETLKDGTTLEAKRNR 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496122|ref|XP_003516919.1| PREDICTED: LOW QUALITY PROTEIN: probable serine/threonine-protein kinase At5g41260-like [Glycine max]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/340 (86%), Positives = 312/340 (91%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVA YLAQALEYC+SKGR LYHDLNAYRILFD+D NPRLS FGLMK SRDGKS
Sbjct: 151 MKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDANPRLSCFGLMKKSRDGKS 210

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVTP+SVVYSFGT+LLDLLSGKHIPPS ALDLIR KNFL+LMDS
Sbjct: 211 YSTNLAFTPPEYLRTGRVTPQSVVYSFGTLLLDLLSGKHIPPSLALDLIRGKNFLMLMDS 270

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
           ALEGHFS D+GTELVRLASRCLQ EARERPNAKSLV SLMSLQ E EVPSYVL+G++ ET
Sbjct: 271 ALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLMSLQNETEVPSYVLMGLRQET 330

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
           A   K ++LTP GEAC RLDLTAIHEILE  GYKDDEGIANELSFQ+WTSQMQETLN KK
Sbjct: 331 ASXNKAITLTPFGEACLRLDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKK 390

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
           HGDTAFRAKDF TAIDCYTQFIDGGTMVSPTVYA RCLS LMNDM QEALGDAMQAQVVS
Sbjct: 391 HGDTAFRAKDFITAIDCYTQFIDGGTMVSPTVYAIRCLSLLMNDMAQEALGDAMQAQVVS 450

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           P+WPTALYL AACLFSLGMENDA+ETLKDGTN+E +KNKN
Sbjct: 451 PEWPTALYLHAACLFSLGMENDAQETLKDGTNMEGRKNKN 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478579|ref|XP_002280021.2| PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Vitis vinifera]

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 294/339 (86%), Positives = 313/339 (92%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYR+LFD+DGNPRLS FGLMKNSRDGKS
Sbjct: 151 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGKS 210

Query: 61  YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           YSTNLAFTPPEY+RTGRVT ESVVYSFGT+LLDLLSGKHIPPSHALDLIR KNFL+LMDS
Sbjct: 211 YSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDS 270

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
            LEGHFSND+GTELVRLASRCLQ E RERPNA+SLV SL  LQKE EVPSYVL+GIQ ET
Sbjct: 271 CLEGHFSNDDGTELVRLASRCLQYEPRERPNARSLVTSLTPLQKETEVPSYVLMGIQQET 330

Query: 181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
               + L LTPLGEACSR+DLTAIHEILE +GYKDDEG+ANELSFQMWT+Q+QETLNSKK
Sbjct: 331 VSPAETLPLTPLGEACSRMDLTAIHEILEKVGYKDDEGVANELSFQMWTNQIQETLNSKK 390

Query: 241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
            GDTAFRAKDF+TAI+CYTQFIDGGTMVSPTV+ARRCL YLMN+MPQEALGDAMQAQVVS
Sbjct: 391 RGDTAFRAKDFTTAIECYTQFIDGGTMVSPTVFARRCLCYLMNEMPQEALGDAMQAQVVS 450

Query: 301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 339
           PDW TA YLQAA LFSLGM+NDARETLKDGT LE KK K
Sbjct: 451 PDWSTAFYLQAAALFSLGMDNDARETLKDGTTLEGKKQK 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2084475	490	BSK6 "brassinosteroid-signalin	0.997	0.691	0.832	2.9e-151
TAIR|locus:2154538	489	BSK5 "brassinosteroid-signalin	1.0	0.695	0.820	6e-151
TAIR|locus:2031279	487	BSK7 "brassinosteroid-signalin	0.985	0.687	0.740	1.1e-133
TAIR|locus:2127118	489	BSK3 "brassinosteroid-signalin	0.979	0.680	0.739	2.8e-130
TAIR|locus:2155115	487	BSK8 "brassinosteroid-signalin	0.982	0.685	0.724	1.5e-129
TAIR|locus:2122058	512	BSK1 "brassinosteroid-signalin	0.994	0.660	0.670	1.3e-121
TAIR|locus:2198160	483	BSK4 "brassinosteroid-signalin	0.964	0.679	0.661	2.2e-112
TAIR|locus:2083499	477	BSK9 "brassinosteroid-signalin	0.985	0.702	0.644	3.6e-112
TAIR|locus:2150074	499	BSK10 "brassinosteroid-signali	0.985	0.671	0.612	8.7e-111
TAIR|locus:2142315	489	BSK2 "brassinosteroid-signalin	0.994	0.691	0.6	6.1e-110

TAIR|locus:2084475 BSK6 "brassinosteroid-signaling kinase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
 Identities = 284/341 (83%), Positives = 311/341 (91%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             MKWAMRLRVAL LAQALEYCS+KGRALYHDLNAYR+LFDKDGNPRLS FGLMKNSRDGKS
Sbjct:   149 MKWAMRLRVALCLAQALEYCSNKGRALYHDLNAYRVLFDKDGNPRLSCFGLMKNSRDGKS 208

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLAFTPPEY+RTGRVTPESVV+SFGT+LLDL+SGKHIPPSHALDLIR KN  +LMDS
Sbjct:   209 YSTNLAFTPPEYLRTGRVTPESVVFSFGTVLLDLMSGKHIPPSHALDLIRGKNCAMLMDS 268

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
             ALEGHFSN++GTELVRLA+RCLQ EARERPN KSLV SL++LQKE++V SYVL+GI HET
Sbjct:   269 ALEGHFSNEDGTELVRLATRCLQYEARERPNVKSLVTSLVTLQKESDVASYVLMGIPHET 328

Query:   181 -APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSK 239
              A    PLSLTP G+AC R+DLTAI EIL  +GYKDDEGIANELSFQMWT+QMQE+LNSK
Sbjct:   329 EAEEESPLSLTPFGDACLRVDLTAIQEILSKIGYKDDEGIANELSFQMWTNQMQESLNSK 388

Query:   240 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV 299
             K GD AFR+KDF+TA+DCYTQFIDGGTMVSPTV+ARRCLSYLMND  QEAL DA+QAQVV
Sbjct:   389 KQGDLAFRSKDFTTAVDCYTQFIDGGTMVSPTVHARRCLSYLMNDNAQEALTDALQAQVV 448

Query:   300 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK-NK 339
             SPDWPTALYLQAACLF LGME DA++ LKDGT LEAKK NK
Sbjct:   449 SPDWPTALYLQAACLFKLGMEADAQQALKDGTTLEAKKSNK 489

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2154538 BSK5 "brassinosteroid-signaling kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
 Identities = 279/340 (82%), Positives = 308/340 (90%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             MKW+MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD+DGNPRLS FGLMKNSRDGKS
Sbjct:   148 MKWSMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKS 207

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLAFTPPEY+RTGRV PESVVYSFGT+LLDLLSGKHIPPSHALDLIR KNFL+LMDS
Sbjct:   208 YSTNLAFTPPEYLRTGRVIPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDS 267

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
              L+GHFSND+GT+LVRLASRCLQ EARERPN KSLV SL  LQKE ++PS+VL+GI H  
Sbjct:   268 CLDGHFSNDDGTDLVRLASRCLQYEARERPNVKSLVSSLAPLQKETDIPSHVLMGIPHGA 327

Query:   181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
             A   +  SLTPLG+ACSR DLTAIHEILE +GYKDDEG+ANELSFQ+WT Q+QETLNSKK
Sbjct:   328 ASPKETTSLTPLGDACSRHDLTAIHEILEKVGYKDDEGVANELSFQVWTDQIQETLNSKK 387

Query:   241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
              GD AF+ KDF TA++CYTQFI+ GTMVSPTV+ARRCL YLM++MPQEALGDAMQAQVVS
Sbjct:   388 QGDAAFKGKDFVTAVECYTQFIEDGTMVSPTVFARRCLCYLMSNMPQEALGDAMQAQVVS 447

Query:   301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
             P+WPTA YLQAA LFSLGM+ DA ETLKDGT+LEAKK+ N
Sbjct:   448 PEWPTAFYLQAAALFSLGMDKDACETLKDGTSLEAKKHNN 487

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2031279 BSK7 "brassinosteroid-signaling kinase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
 Identities = 251/339 (74%), Positives = 289/339 (85%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             MKWAMRLRVAL++AQALEYC+ KGRALYHDLNAYR+LFD D NPRLS FGLMKNSRDGKS
Sbjct:   152 MKWAMRLRVALHIAQALEYCTGKGRALYHDLNAYRVLFDDDSNPRLSCFGLMKNSRDGKS 211

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLAFTPPEY+RTGRVTPESV+YS+GT+LLDLLSGKHIPPSHALDLIR +N  +L+DS
Sbjct:   212 YSTNLAFTPPEYLRTGRVTPESVMYSYGTLLLDLLSGKHIPPSHALDLIRDRNIQMLIDS 271

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
              LEG FS+D+GTEL+RLASRCLQ E RERPN KSLV +++ LQK+ E PS+ L+GI   +
Sbjct:   272 CLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVTAMIPLQKDLETPSHQLMGIP--S 329

Query:   181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
             + ST PLS  PLGEAC R DLTAIHEILE + YKDDEG A ELSFQMWT+QMQ++LN KK
Sbjct:   330 SASTTPLS--PLGEACLRTDLTAIHEILEKLSYKDDEGAATELSFQMWTNQMQDSLNFKK 387

Query:   241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
              GD AFR K+F+ AIDCY+QFI+GGTMVSPTVYARR L YLMN+MPQEAL DAMQAQV+S
Sbjct:   388 KGDVAFRHKEFANAIDCYSQFIEGGTMVSPTVYARRSLCYLMNEMPQEALNDAMQAQVIS 447

Query:   301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 339
             P W  A YLQA  L +LG EN+A   LKDG+ LE+K+N+
Sbjct:   448 PAWHIASYLQAVALSALGQENEAHAALKDGSMLESKRNR 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2127118 BSK3 "brassinosteroid-signaling kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1278 (454.9 bits), Expect = 2.8e-130, P = 2.8e-130
 Identities = 250/338 (73%), Positives = 284/338 (84%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             MKW MRLRV LYLAQALEYC+SKGR LYHDLNAYR+LFD++ NPRLS+FGLMKNSRDGKS
Sbjct:   151 MKWTMRLRVVLYLAQALEYCTSKGRTLYHDLNAYRVLFDEECNPRLSTFGLMKNSRDGKS 210

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLAFTPPEY+RTGR+TPESV+YSFGT+LLDLLSGKHIPPSHALDLIR +N   L DS
Sbjct:   211 YSTNLAFTPPEYLRTGRITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQTLTDS 270

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
              L+G FS+ +GTELVRLASRCLQ EARERPN KSLV +L  LQKE EV S+VL+G+ H  
Sbjct:   271 CLDGQFSDSDGTELVRLASRCLQYEARERPNTKSLVTALTPLQKETEVLSHVLMGLPH-- 328

Query:   181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
             + S  PLS  PLGEACSR DLTA+ EILE +GYKDDEG+ NELSF MWT QMQE+LNSKK
Sbjct:   329 SGSVSPLS--PLGEACSRRDLTAMLEILEKLGYKDDEGVTNELSFHMWTDQMQESLNSKK 386

Query:   241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
              GD AFR KDF  AI+CYTQFIDGG M+SPTV ARR L YLM+DMP+EAL DA+QAQV+S
Sbjct:   387 KGDVAFRQKDFREAIECYTQFIDGG-MISPTVCARRSLCYLMSDMPKEALDDAIQAQVIS 445

Query:   301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 338
             P W  A YLQ+A L  LGME +++  LK+G+NLEAK N
Sbjct:   446 PVWHVASYLQSASLGILGMEKESQIALKEGSNLEAKMN 483

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2155115 BSK8 "brassinosteroid-signaling kinase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 245/338 (72%), Positives = 286/338 (84%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             MKWAMRLRVAL++AQALEYC+SKGRALYHDLNAYR+LFD D NPRLS FGLMKNSRDGKS
Sbjct:   152 MKWAMRLRVALHIAQALEYCTSKGRALYHDLNAYRVLFDDDANPRLSCFGLMKNSRDGKS 211

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLAFTPPEY+RTGRVTPESV+YSFGT+LLDLLSGKHIPPSHALDLIR +N  +LMDS
Sbjct:   212 YSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLMDS 271

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
              LEG FS+D+GTEL+RLASRCLQ E RERPN KSLV +++ LQK+ E+ S+ LLG+ + +
Sbjct:   272 GLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVSAMIPLQKDLEIASHQLLGVPN-S 330

Query:   181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
             A +T   +L+PLGEAC R DLTAIHEI+E +GYKDDEG   ELSFQMWT QMQ+TL  KK
Sbjct:   331 ATTT---ALSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKK 387

Query:   241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
              GD+AFR KDF+ AI+CY+QFI+ GTM SPTV+AR+ L YLMNDMP+EAL +AMQAQV+S
Sbjct:   388 KGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVIS 447

Query:   301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 338
             P W  A YLQA  L +LG EN+A   LKDG  LE+K+N
Sbjct:   448 PAWHIASYLQAVALSALGQENEAHTALKDGAMLESKRN 485

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2122058 BSK1 "brassinosteroid-signaling kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
 Identities = 228/340 (67%), Positives = 271/340 (79%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             ++WAMRLRV  Y+A+AL+YCS++GR LYHDLNAYR+LFD+DG+PRLS FGLMKNSRDGKS
Sbjct:   169 IEWAMRLRVGYYIAEALDYCSTEGRPLYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKS 228

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLA+TPPEY+R GRVTPESV YSFGT+LLDLLSGKHIPPSHALD+IR KN +LLMDS
Sbjct:   229 YSTNLAYTPPEYLRNGRVTPESVTYSFGTVLLDLLSGKHIPPSHALDMIRGKNIILLMDS 288

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQ-HE 179
              LEG FS +E T +V LAS+CLQ E RERPN K LV +L  LQ +++VPSYV+LGI+  E
Sbjct:   289 HLEGKFSTEEATVVVELASQCLQYEPRERPNTKDLVATLAPLQTKSDVPSYVMLGIKKQE 348

Query:   180 TAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSK 239
              APST    L+PLGEACSR+DLTAIH+IL    Y+DDEG  NELSFQ WT QM++ L+++
Sbjct:   349 EAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEG-TNELSFQEWTQQMKDMLDAR 407

Query:   240 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV 299
             K GD +FR KDF TAIDCY+QFID GTMVSPTV+ RR L YL+ D P  AL DAMQAQ V
Sbjct:   408 KRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCV 467

Query:   300 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK 339
              PDWPTA Y+Q+  L  L M  DA + L +   LE K+ +
Sbjct:   468 YPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQR 507

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2198160 BSK4 "brassinosteroid-signaling kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 223/337 (66%), Positives = 268/337 (79%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             MKWAMRLRVALY+++ALEYCS+ G  LYHDLNAYR+LFD++ NPRLS+FGLMKNSRDGKS
Sbjct:   149 MKWAMRLRVALYISEALEYCSNNGHTLYHDLNAYRVLFDEECNPRLSTFGLMKNSRDGKS 208

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLAFTPPEY+RTGR+T ESV+YSFGT+LLDLL+GKHIPPSHALDLIR +N   L DS
Sbjct:   209 YSTNLAFTPPEYLRTGRITAESVIYSFGTLLLDLLTGKHIPPSHALDLIRDRNLQTLTDS 268

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
              LEG FS+ +GTELVRL S CLQ EARERPN KSLV +L+SLQK+ EV S+VL+G+    
Sbjct:   269 CLEGQFSDSDGTELVRLTSCCLQYEARERPNIKSLVTALISLQKDTEVLSHVLMGLPQSG 328

Query:   181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
               ++ P   +P  EACS  DLT++ EILE +GYKDDE    +LSF MWT QMQE +NSKK
Sbjct:   329 TFASPP---SPFAEACSGKDLTSMVEILEKIGYKDDE----DLSF-MWTEQMQEAINSKK 380

Query:   241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
              GD AFR KDFS AI+ YTQF+D G M+S TV  RR  SYLM++M +EAL DAM+AQ +S
Sbjct:   381 KGDIAFRRKDFSEAIEFYTQFLDLG-MISATVLVRRSQSYLMSNMAKEALDDAMKAQGIS 439

Query:   301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK 337
             P W  ALYLQ+A L  LGME +++  L +G+ LEA+K
Sbjct:   440 PVWYVALYLQSAALSVLGMEKESQIALTEGSILEARK 476

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2083499 BSK9 "brassinosteroid-signaling kinase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
 Identities = 219/340 (64%), Positives = 265/340 (77%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             MKW MRLRVAL+ A ALEYC+  G  LYHDLN YRILFDK GNPRLS FGLMK SR+GKS
Sbjct:   137 MKWEMRLRVALHTATALEYCNDWGIDLYHDLNTYRILFDKVGNPRLSCFGLMKCSREGKS 196

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLAF PPEY+R G V PESV +SFGT+LLDL+SG+HIPP+HALDL R KN+L+LMDS
Sbjct:   197 YSTNLAFAPPEYLRLGTVIPESVTFSFGTLLLDLMSGRHIPPNHALDLFRGKNYLVLMDS 256

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEV-PSYVLLGIQHE 179
             AL+G FS+++ TEL+ LASRCL+ E  ERP+ K L+ +L  L+K AE+ P+     I   
Sbjct:   257 ALDGQFSDEDRTELIHLASRCLRPEPDERPSIKFLMSALSRLEKRAELWPNVKEENIPTP 316

Query:   180 --TAPSTK-PLSLTPLGEACSRLDLTAIHEILEGMGY-KDDEGIANELSFQMWTSQMQET 235
               T P+TK PL LTP GEAC R+DL+ +HE+LE +GY +DD  + NE SFQMWT QMQE 
Sbjct:   317 SYTEPATKEPLPLTPFGEACWRVDLSGMHELLEKLGYGEDDVVVTNEFSFQMWTGQMQEN 376

Query:   236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQ 295
             ++ KKHGD AFRAKDF TAI+ YT+F+ G  +VSPTV ARRCL YLM+DM +EAL DAMQ
Sbjct:   377 MDYKKHGDAAFRAKDFETAIEFYTEFMSGAPVVSPTVLARRCLCYLMSDMFREALSDAMQ 436

Query:   296 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA 335
              QV SP++  ALYLQAACL  LGME +A+E L+ G++LEA
Sbjct:   437 TQVASPEFSIALYLQAACLLKLGMEAEAKEALRHGSSLEA 476

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2150074 BSK10 "brassinosteroid-signaling kinase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 210/343 (61%), Positives = 261/343 (76%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             MKW MRL+VAL+ A+ALEYC+ KG  LYHDLN YRI+FDK G P+LS FGLMKNS +GK 
Sbjct:   156 MKWEMRLKVALHTARALEYCNDKGIDLYHDLNPYRIMFDKTGIPKLSCFGLMKNSHEGKI 215

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLAF PPEY+R G V  ESV +SFGT+LLDL+SG+HIPP+HALDL R KN+L+LMDS
Sbjct:   216 YSTNLAFAPPEYLRLGTVIAESVTFSFGTLLLDLMSGRHIPPNHALDLFRGKNYLVLMDS 275

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEV-PSYVLL----- 174
             AL+G FS+++ TEL+ +ASRC ++E  ERP+ K L  +L  LQK A++ P  V       
Sbjct:   276 ALDGQFSDEDRTELIHVASRCFKTEPEERPSIKFLKATLSRLQKRAKLCPINVKRPMSPP 335

Query:   175 --GIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQM 232
                +  +T P+T+ L LTP G+ACSR DL++IHE+LE +GY++D G+ NE SFQMWT +M
Sbjct:   336 SKNLPEKTKPATESLKLTPFGDACSRADLSSIHELLEKLGYEEDNGVGNEFSFQMWTGEM 395

Query:   233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGD 292
             QE ++ KKHGD AF AKDF TAI+ YT+F+ G   VSPTV ARRCL YLM +M  EAL D
Sbjct:   396 QENMDYKKHGDAAFLAKDFDTAIEFYTEFMTGAPTVSPTVLARRCLCYLMTEMFSEALSD 455

Query:   293 AMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA 335
             AMQAQV SP+WP  LYLQAACLF L ME +A+E L+ G+ LEA
Sbjct:   456 AMQAQVASPEWPIPLYLQAACLFKLEMEAEAKEALRHGSALEA 498

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2142315 BSK2 "brassinosteroid-signaling kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
 Identities = 204/340 (60%), Positives = 265/340 (77%)

Query:     1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             + W MR+R+A Y+A+AL+YC+ + R +YHDLNAYRILFD++G+PRLS+FGLMKNSRDGKS
Sbjct:   149 LPWDMRVRIADYIAEALDYCNIENRKIYHDLNAYRILFDEEGDPRLSTFGLMKNSRDGKS 208

Query:    61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
             YSTNLA+TPPE++RTGRV PESV++S+GT+LLDLLSGKHIPPSHALD+IR KN LLLMDS
Sbjct:   209 YSTNLAYTPPEFLRTGRVIPESVIFSYGTILLDLLSGKHIPPSHALDIIRGKNALLLMDS 268

Query:   121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
             +LEG ++ND+ T+LV LAS+CLQSEA++RP+ K L+ ++  LQK+ EV S+VL+G+   T
Sbjct:   269 SLEGQYANDDATKLVDLASKCLQSEAKDRPDTKFLLSAVAPLQKQEEVASHVLMGLPKNT 328

Query:   181 APSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKK 240
                  P  L+PLG+AC+++DL   H+IL   GY+D+EG  NELSFQ WT Q+QE LN+KK
Sbjct:   329 V--ILPTMLSPLGKACAKMDLATFHDILLKTGYRDEEGAENELSFQEWTQQVQEMLNTKK 386

Query:   241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS 300
              GD AFR KDF  +I+ Y++ +    + S TV+ARR  SYLM D  + AL DAMQAQV  
Sbjct:   387 FGDIAFRDKDFKNSIEYYSKLVGMMPVPSATVFARRAFSYLMTDQQELALRDAMQAQVCI 446

Query:   301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
             P+WPTA YLQA  L  LGME DA++ L DG   +AK+  +
Sbjct:   447 PEWPTAFYLQALALSKLGMETDAQDMLNDGAAYDAKRQNS 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	5e-13
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-11
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-11
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	5e-11
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	8e-10
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-09
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-08
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-07
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-07
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-07
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	7e-07
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	9e-07
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-06
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	4e-06
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-06
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	5e-06
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	5e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	6e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	6e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-05
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-05
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-05
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-05
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	4e-05
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	4e-05
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-05
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	5e-05
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	5e-05
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	6e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	6e-05
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	7e-05
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	8e-05
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	9e-05
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	9e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-04
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-04
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	2e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	2e-04
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	2e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-04
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-04
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	4e-04
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	4e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	5e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	5e-04
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	5e-04
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	6e-04
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	6e-04
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	8e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	8e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.001
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	0.001
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.001
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.001
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	0.001
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	0.001
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	0.001
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	0.001
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	0.002
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.002
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.002
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	0.002
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	0.002
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	0.003
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	0.003
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	0.003
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	0.004
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	0.004
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 46/163 (28%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKD-GNPRLSSFGLMKNSRDG 58
           +     LR+ L + + LEY  S G  + H DL    IL D D G  +L+ FGL K     
Sbjct: 89  LSEDEILRILLQILEGLEYLHSNG--IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSD 146

Query: 59  KSYST----NLAFTPPE-YMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
           KS         A+  PE  +  G  + +S ++S G +L +L            DLIR   
Sbjct: 147 KSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL--------PELKDLIR--- 195

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
                                     + LQ +  +RP+AK ++
Sbjct: 196 --------------------------KMLQKDPEKRPSAKEIL 212

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 8   RVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLA 66
           ++AL + + LEY  S G  + H DL    IL D++G  +++ FGL K      S  T   
Sbjct: 102 KIALQILRGLEYLHSNG--IIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFV 159

Query: 67  FTP----PEYMRTGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
            TP    PE +  G    P+  V+S G +L +LL+GK  P S    L + +    ++   
Sbjct: 160 GTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKP-PFSGENILDQLQLIRRILGPP 218

Query: 122 LEGHF--SNDEGTELVRLASRCLQSEARERPNAKSLV 156
           LE      +    E   L  +CL  +  +RP A+ ++
Sbjct: 219 LEFDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEIL 255

Length = 260

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 22/169 (13%)

Query: 2   KWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
             +  L  AL +A+ +EY  SK     H DL A   L  ++   ++S FGL ++  D   
Sbjct: 101 SLSDLLSFALQIARGMEYLESKN--FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY 158

Query: 61  YSTNLA-----FTPPEYMRTGRVTPESVVYSFGTMLLDLLS-GK----HIPPSHALDLIR 110
           Y          +  PE ++ G+ T +S V+SFG +L ++ + G+     +  +  L+ ++
Sbjct: 159 YKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGMSNAEVLEYLK 218

Query: 111 SKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
               L    +            EL +L  +C   +  +RP    LV  L
Sbjct: 219 KGYRLPKPPNCPP---------ELYKLMLQCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 22/170 (12%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGK 59
           +  +  L  AL +A+ +EY  SK     H DL A   L  ++   ++S FGL ++  D  
Sbjct: 99  LSLSDLLSFALQIARGMEYLESKN--FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD 156

Query: 60  SYSTNLA-----FTPPEYMRTGRVTPESVVYSFGTMLLDLLS-GK----HIPPSHALDLI 109
            Y          +  PE ++ G+ T +S V+SFG +L ++ + G+     +     L+ +
Sbjct: 157 YYRKRGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEYL 216

Query: 110 RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
           ++   L    +            EL  L  +C   +  +RP    LV  L
Sbjct: 217 KNGYRLPQPPNCPP---------ELYDLMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 19/165 (11%)

Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK-NSRDGKSYSTNL 65
           L+ +L +A+ +EY  SK + ++ DL A  IL  +DG  ++S FGL +  S    +    +
Sbjct: 103 LQFSLDVAEGMEYLESK-KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPV 161

Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEG 124
            +T PE ++  + + +S V+S+G +L ++ S G+   P  +L  ++           +E 
Sbjct: 162 KWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVK---------ECVEK 212

Query: 125 HFSND--EG--TELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
            +  +  EG   ++  L + C ++E ++RP+   L      L+KE
Sbjct: 213 GYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLR---EKLEKE 254

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 21/165 (12%)

Query: 6   RLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN- 64
            L  A+ +A+ +EY +SK + ++ DL A   L  +D   ++S FGL ++  D   Y    
Sbjct: 107 LLSFAIQIAKGMEYLASK-KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKT 165

Query: 65  -----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLS-GKH----IPPSHALDLIRSKNF 114
                + +  PE ++ G  T +S V+SFG +L ++ + G      +     L+ +R    
Sbjct: 166 GGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYR 225

Query: 115 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
           L   +   +         EL  L   C Q +  +RP    LV  L
Sbjct: 226 LPKPEYCPD---------ELYELMLSCWQLDPEDRPTFSELVERL 261

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 25/162 (15%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDL---NAYRILFDKDGNPRLSSFGLMKNSRDGKSY 61
               YL Q   ALEY  SKG  ++ DL   N   IL D+DG+ +L+ FGL +    G+  
Sbjct: 98  EARFYLRQILSALEYLHSKGI-VHRDLKPEN---ILLDEDGHVKLADFGLARQLDPGEKL 153

Query: 62  STN---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGK-----HIPPSHALDLIRSKN 113
           +T      +  PE +          ++S G +L +LL+GK               I    
Sbjct: 154 TTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPK 213

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
                    E   S  E  +L+R   + L  +  +R  A+  
Sbjct: 214 PPFPPP---EWDIS-PEAKDLIR---KLLVKDPEKRLTAEEA 248

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 30/173 (17%)

Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK--NSRDGKSYSTN 64
           L  +  + + ++Y  S+ R ++ DL A  IL + +   ++S FGL K         Y   
Sbjct: 112 LLFSSQICKGMDYLGSQ-RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKE 170

Query: 65  LAFTP-----PEYMRTGRVTPESVVYSFGTMLLDLLS-GKH--IPPSHALDLI---RSKN 113
              +P     PE +RT + +  S V+SFG  L +L + G     PP+  L +I   + + 
Sbjct: 171 PGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQM 230

Query: 114 FLLLMDSALEGHFSNDEGTELVR----------LASRCLQSEARERPNAKSLV 156
            +  +   L+      EG  L R          L   C ++E ++RP+   L+
Sbjct: 231 IVTRLLELLK------EGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLI 277

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 7   LRVALYLAQALEYC----SSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYS 62
            R+   L  AL  C          L+ DL    I  D + N +L  FGL K      S++
Sbjct: 108 WRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFA 167

Query: 63  TNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM 118
                TP    PE +       +S ++S G ++ +L +    PP  A      +N L L 
Sbjct: 168 KTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALS--PPFTA------RNQLQLA 219

Query: 119 DSALEGHFSNDEG---TELVRLASRCLQSEARERPNAKSL 155
               EG F        +EL  +    L  +  +RP+ + L
Sbjct: 220 SKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEEL 259

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 56/263 (21%), Positives = 89/263 (33%), Gaps = 28/263 (10%)

Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN-PRLSSFGLMKNSRDGKSYSTN- 64
           L +   +  ALEY  SKG  ++ D+    IL D+DG   +L  FGL K   D  S S+  
Sbjct: 104 LFILAQILSALEYLHSKG-IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIP 162

Query: 65  ---------LAFTPPEY---MRTGRVTPESVVYSFGTMLLDLLSGKH--------IPPSH 104
                      +  PE    +     +  S ++S G  L +LL+G             S 
Sbjct: 163 ALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQ 222

Query: 105 ALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK 164
            L +I       L  S L              L  + L  + + R ++ S +     L  
Sbjct: 223 TLKIILELPTPSL-ASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH--DLLA 279

Query: 165 EAEVPSYVLLGIQHETAPSTKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDEGIANELS 224
             ++    L  +      +   LSL P  EA           I       DD   + EL+
Sbjct: 280 HLKLKESDLSDLLKPDDSAPLRLSLPPSLEALIS--SLNSLAISGSDLKLDDSNFSKELA 337

Query: 225 FQMWTSQMQETLNSKKHGDTAFR 247
               +S    + +      ++ R
Sbjct: 338 PNGVSSSPHNSSSLLLSTASSKR 360

Length = 384

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 19/150 (12%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL---MKNSRDGKSYSTNLAFTPPE 71
           + LEY  S G  ++ D+ A  IL   DG  +L  FGL   + +++   +      +  PE
Sbjct: 109 KGLEYLHSNGI-IHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPE 167

Query: 72  YMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSH------ALDLIRSKNFLLLMDSALEGH 125
            +       ++ ++S G   ++L  GK  PP        AL  I +     L        
Sbjct: 168 VINGKPYDYKADIWSLGITAIELAEGK--PPYSELPPMKALFKIATNGPPGL----RNPE 221

Query: 126 FSNDEGTELVRLASRCLQSEARERPNAKSL 155
             +DE  + +    +CLQ    +RP A+ L
Sbjct: 222 KWSDEFKDFL---KKCLQKNPEKRPTAEQL 248

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 49.2 bits (117), Expect = 9e-07
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 21/156 (13%)

Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN-- 64
           +++    A  +EY  SK   ++ DL A   L  +    ++S FG+ +   DG   ST   
Sbjct: 97  IQMVENAAAGMEYLESK-HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGM 155

Query: 65  ----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP-----PSHALDLIRSKNFL 115
               + +T PE +  GR + ES V+SFG +L +  S   +P          + I     L
Sbjct: 156 KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRL 215

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN 151
              +   +          + RL  RC + +  +RP+
Sbjct: 216 PCPELCPD---------AVYRLMERCWEYDPGQRPS 242

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 46/149 (30%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           R   Y A+   ALEY  S G  +Y DL    IL D DG+ +L+ FGL K      S +  
Sbjct: 94  RARFYAAEIVLALEYLHSLG-IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNT 152

Query: 65  LAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
              TP    PE +           +S G +L ++L+GK  PP +A D  R + +  ++  
Sbjct: 153 FCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGK--PPFYAED--RKEIYEKILKD 208

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARER 149
            L   F      E   L S  LQ +  +R
Sbjct: 209 PLR--FPEFLSPEARDLISGLLQKDPTKR 235

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 6   RLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTN 64
           +L  AL + + +EY   K   ++ DL A  +L  +D   ++S FGL K +  G  S    
Sbjct: 104 QLGFALDVCEGMEYLEEK-NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLP 162

Query: 65  LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP 101
           + +T PE +R  + + +S V+SFG +L ++ S   +P
Sbjct: 163 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 18/154 (11%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFG----LMKNSRDGKSYSTNLAFTP- 69
           + LEY  S G+ ++ D+ A  IL  +DG+ +++ FG    L       +        TP 
Sbjct: 113 KGLEYLHSNGQ-IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPC 171

Query: 70  ---PEYMRTGRVTPESV-VYSFGTMLLDLLSGK----HIPPSHALDLIRSKNFLLLMDSA 121
              PE M           ++SFG   ++L +G       PP   L L    +   L   A
Sbjct: 172 WMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGA 231

Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
               +S        ++ S CLQ +  +RP A+ L
Sbjct: 232 DYKKYSK----SFRKMISLCLQKDPSKRPTAEEL 261

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 23/171 (13%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKN-SRDG 58
           +     L++AL +A+ +EY  SK     H DL A   L  ++   ++S FGL ++   D 
Sbjct: 99  LTLKDLLQMALQIAKGMEYLESKN--FVHRDLAARNCLVTENLVVKISDFGLSRDIYEDD 156

Query: 59  KSYSTNLAFTP-----PEYMRTGRVTPESVVYSFGTMLLDLLSG-----KHIPPSHALDL 108
                     P     PE ++ G+ T +S V+SFG +L ++ +        +     L+L
Sbjct: 157 YYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEL 216

Query: 109 IRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
           +     L   ++  +         EL  L  +C   +  +RP    LV  L
Sbjct: 217 LEDGYRLPRPENCPD---------ELYELMLQCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           R   Y A+    L++  SKG  +Y DL    IL D DG+ +++ FG+ K +  G + +  
Sbjct: 97  RATFYAAEIICGLQFLHSKG-IVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCT 155

Query: 65  LAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALD 107
              TP    PE +   +       +SFG +L ++L G+   P H  D
Sbjct: 156 FCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQ--SPFHGHD 200

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 47.0 bits (111), Expect = 5e-06
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 33/185 (17%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QALE+  S  + ++ D+ +  IL   DG+ +L+ FG        +S  + +  TP    P
Sbjct: 127 QALEFLHSN-QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 185

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE 130
           E +      P+  ++S G M ++++ G+  PP    + +R+   L L+ +       N E
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGE--PPYLNENPLRA---LYLIATNGTPELQNPE 240

Query: 131 GTELV--RLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPL- 187
               +     +RCL  +  +R +AK L                    +QH+     KPL 
Sbjct: 241 KLSAIFRDFLNRCLDMDVEKRGSAKEL--------------------LQHQFLKIAKPLS 280

Query: 188 SLTPL 192
           SLTPL
Sbjct: 281 SLTPL 285

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 18/170 (10%)

Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY-------S 62
           A  + + + Y  S+   ++ DL A  +L D D   ++  FGL K   +G  Y        
Sbjct: 113 AQQICEGMAYLHSQ-HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGD 171

Query: 63  TNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLS---GKHIPPSHALDLIRSKNFLL--- 116
           + + +   E ++  + +  S V+SFG  L +LL+    K  PP    ++I  K   +   
Sbjct: 172 SPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVV 231

Query: 117 ----LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSL 162
               L++  +      +   E+  L   C ++EA+ RP  +SL+  L  +
Sbjct: 232 RLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEM 281

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 13/154 (8%)

Query: 9   VALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNL 65
           VA+Y+ Q    L Y   +G  ++ D+ A  IL  KDG  +L+ FG+     D      ++
Sbjct: 101 VAVYVYQVLQGLAYLHEQG-VIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASV 159

Query: 66  AFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
             TP    PE +     +  S ++S G  +++LL+G   PP + L+       L  +   
Sbjct: 160 VGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGN--PPYYDLN---PMAALFRIVQD 214

Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
                      EL     +C Q +   RP AK L
Sbjct: 215 DHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQL 248

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 26/161 (16%)

Query: 9   VALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS---RDGKSYS 62
           + LY  Q    LEY   +   ++ D+    IL D +G  +L+ FG+ K        KS+ 
Sbjct: 104 IRLYTRQILLGLEYLHDRN-TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFK 162

Query: 63  TNLAFTPPEY-MRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI-------RSKNF 114
            +  +  PE   + G     + ++S G  +L++ +GK  PP   L+ +       RSK  
Sbjct: 163 GSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGK--PPWSQLEGVAAVFKIGRSKEL 220

Query: 115 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
             + D     H S DE  + +     CLQ +   RP A  L
Sbjct: 221 PPIPD-----HLS-DEAKDFILK---CLQRDPSLRPTAAEL 252

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           R   Y A+    L++  SKG  +Y DL    ++ D+DG+ +++ FG+ K +  G + ++ 
Sbjct: 97  RATFYAAEIVCGLQFLHSKG-IIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRAST 155

Query: 65  LAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALD 107
              TP    PE ++  + T     +SFG +L ++L G+   P H  D
Sbjct: 156 FCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQ--SPFHGDD 200

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           + L+Y  S+ R ++ D+ A  +L  + G+ +L+ FG+     D +        TP    P
Sbjct: 112 KGLDYLHSE-RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAP 170

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHFSN 128
           E ++      ++ ++S G   ++L  G+  PP+  L  +R   FL+  +S   LEG +S 
Sbjct: 171 EVIKQSAYDFKADIWSLGITAIELAKGE--PPNSDLHPMRVL-FLIPKNSPPTLEGQYSK 227

Query: 129 DEGTELVRLASRCLQSEARERPNAKSLV 156
                       CL  + R RP AK L+
Sbjct: 228 ----PFKEFVEACLNKDPRFRPTAKELL 251

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +K    ++ AL  A  + Y  SK   ++ DL A   L  ++   ++S FG+ +   DG  
Sbjct: 90  LKTKQLVKFALDAAAGMAYLESKN-CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIY 148

Query: 61  YSTNLA-----FTPPEYMRTGRVTPESVVYSFGTMLLDLLS 96
            S+ L      +T PE +  GR + ES V+S+G +L +  S
Sbjct: 149 SSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFS 189

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 14  AQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN-------LA 66
           A  +EY  SK   ++ DL A   L  ++   ++S FG M    +G  Y+ +       + 
Sbjct: 103 AAGMEYLESKN-CIHRDLAARNCLVGENNVLKISDFG-MSREEEGGIYTVSDGLKQIPIK 160

Query: 67  FTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP 101
           +T PE +  GR T ES V+S+G +L +  S    P
Sbjct: 161 WTAPEALNYGRYTSESDVWSYGILLWETFSLGDTP 195

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST-NL 65
           L+ +L + +A+EY  +    ++ DL A  +L  +D   ++S FGL K +   +      +
Sbjct: 105 LKFSLDVCEAMEYLEANN-FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 163

Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP 101
            +T PE +R  + + +S V+SFG +L ++ S   +P
Sbjct: 164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 8/96 (8%)

Query: 9   VALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYS- 62
           V  YLA+   AL++  S G  +Y DL    IL D++G+ +L+ FGL K S D   K+YS 
Sbjct: 100 VKFYLAELALALDHLHSLG-IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSF 158

Query: 63  -TNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSG 97
              + +  PE +     T  +  +SFG ++ ++L+G
Sbjct: 159 CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 194

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 33/185 (17%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QAL++  S  + ++ D+ +  IL   DG+ +L+ FG        +S  + +  TP    P
Sbjct: 126 QALDFLHSN-QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 184

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE 130
           E +      P+  ++S G M ++++ G+  PP    + +R+   L L+ +       N E
Sbjct: 185 EVVTRKAYGPKVDIWSLGIMAIEMVEGE--PPYLNENPLRA---LYLIATNGTPELQNPE 239

Query: 131 GTELV--RLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPL- 187
               V     +RCL+ +   R +AK L                    +QH      KPL 
Sbjct: 240 RLSAVFRDFLNRCLEMDVDRRGSAKEL--------------------LQHPFLKLAKPLS 279

Query: 188 SLTPL 192
           SLTPL
Sbjct: 280 SLTPL 284

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 29/164 (17%)

Query: 9   VALYLAQ---ALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMK--NSRDGKSYS 62
           +  Y  Q    L Y  S G    H D+    IL D DG  +L+ FG  K     +    +
Sbjct: 103 IRKYTRQILEGLAYLHSNGIV--HRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGT 160

Query: 63  TNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM 118
            ++  TP    PE +R       + ++S G  ++++ +GK  PP   L          L 
Sbjct: 161 GSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGK--PPWSELG----NPMAALY 214

Query: 119 DSALEG-------HFSNDEGTELVRLASRCLQSEARERPNAKSL 155
                G       H S +E  + +R   +CL+ + ++RP A  L
Sbjct: 215 KIGSSGEPPEIPEHLS-EEAKDFLR---KCLRRDPKKRPTADEL 254

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 295
              G+  ++  D+  A++ Y + ++    + P     Y     +Y      +EAL D  +
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALE----LDPDNADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 296 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK 336
           A  + PD   A Y      + LG   +A E  +    L+  
Sbjct: 60  ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK-----NSRDGK 59
            V +Y+A+   AL++    G  +Y D+    IL D +G+  L+ FGL K           
Sbjct: 106 EVRVYIAEIVLALDHLHQLG-IIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAY 164

Query: 60  SYSTNLAFTPPEYMRTGRVTPESVV--YSFGTMLLDLLSG 97
           S+   + +  PE +R G    +  V  +S G +  +LL+G
Sbjct: 165 SFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTG 204

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           R   Y AQ    LE+   + R +Y DL    +L D DGN R+S  GL    +DG+S +  
Sbjct: 98  RACFYTAQIISGLEHLHQR-RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKG 156

Query: 65  LAFTP----PEYMRTGRVTPESVVY-SFGTMLLDLLSGK 98
            A TP    PE ++ G     SV Y + G  L ++++ +
Sbjct: 157 YAGTPGFMAPELLQ-GEEYDFSVDYFALGVTLYEMIAAR 194

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 31/160 (19%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFG---LMKNSRDGK-SYSTNLAFT 68
           + + L+Y  +K   ++ D+    +L +  G  +++ FG   +++N+ D   ++   + + 
Sbjct: 108 ILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYM 167

Query: 69  PPEYMRTGRVTPESVVY-----SFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD---- 119
            PE     R+  ES  Y     S G  LL+   GK  P           +F  LM     
Sbjct: 168 SPE-----RIQGESYSYAADIWSLGLTLLECALGKF-PFLPP----GQPSFFELMQAICD 217

Query: 120 ----SALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
               S     FS  E  + +   S CLQ + ++RP+A  L
Sbjct: 218 GPPPSLPAEEFS-PEFRDFI---SACLQKDPKKRPSAAEL 253

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 38/161 (23%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP--- 69
           L  AL+Y  S+ + L+ D+    I    +G  +L  FG+       K  S+ +       
Sbjct: 112 LCLALKYLHSR-KILHRDIKPQNIFLTSNGLVKLGDFGI------SKVLSSTVDLAKTVV 164

Query: 70  --PEYMRTGRVTPE----------SVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
             P Y+     +PE          S ++S G +L +L + KH  P         +N L L
Sbjct: 165 GTPYYL-----SPELCQNKPYNYKSDIWSLGCVLYELCTLKH--PFEG------ENLLEL 211

Query: 118 MDSALEGHF---SNDEGTELVRLASRCLQSEARERPNAKSL 155
               L+G +    +   +EL  L S  LQ +  ERP+   +
Sbjct: 212 ALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQI 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           V L + +AL    ++G  ++ D+ +  IL   DG  +LS FG             +L  T
Sbjct: 121 VCLAVLKALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGT 179

Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIR 110
           P    PE +      PE  ++S G M+++++ G+    + PP  A+ +IR
Sbjct: 180 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR 229

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 14/150 (9%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP--- 69
           + + L+Y  S+ + ++ D+ A  +L  + G  +L+ FG+     D +        TP   
Sbjct: 110 ILKGLDYLHSE-KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWM 168

Query: 70  -PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHF 126
            PE ++      ++ ++S G   ++L  G+  PP   L  ++   FL+  ++   LEG++
Sbjct: 169 APEVIKQSAYDSKADIWSLGITAIELAKGE--PPHSELHPMKVL-FLIPKNNPPTLEGNY 225

Query: 127 SNDEGTELVRLASRCLQSEARERPNAKSLV 156
           S      L      CL  E   RP AK L+
Sbjct: 226 SK----PLKEFVEACLNKEPSFRPTAKELL 251

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 16/147 (10%)

Query: 17  LEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----PEY 72
           L +  SK + L+ D+ +  +  D   N ++   G+ K   D  +++  +  TP    PE 
Sbjct: 114 LAHLHSK-KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPEL 172

Query: 73  MRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHF---SND 129
                   +S V++ G +L +  +GKH  P  A       N   L+   + G F   S  
Sbjct: 173 CEDKPYNEKSDVWALGVVLYECCTGKH--PFDA------NNQGALILKIIRGVFPPVSQM 224

Query: 130 EGTELVRLASRCLQSEARERPNAKSLV 156
              +L +L  +CL  + R+RP+   L+
Sbjct: 225 YSQQLAQLIDQCLTKDYRQRPDTFQLL 251

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
           A+ +A  + Y  SK R ++ DL A  IL   D   ++  FGLM+     + +        
Sbjct: 103 AVQIANGMRYLESK-RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLK 161

Query: 65  --LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLS 96
              A+  PE +RT   +  S V+ FG  L ++ +
Sbjct: 162 VPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFT 195

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 17/101 (16%)

Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN-- 64
           L +A+ +A  +EY SS    ++ DL A   L  +    ++S FGL   SRD   YS +  
Sbjct: 127 LHIAIQIAAGMEYLSSH-HFVHRDLAARNCLVGEGLTVKISDFGL---SRDI--YSADYY 180

Query: 65  ---------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLS 96
                    + + PPE +  G+ T ES ++SFG +L ++ S
Sbjct: 181 RVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 13/154 (8%)

Query: 11  LYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN---LAF 67
           L +A+ +EY +SK + ++ DL A   + D+    +++ FGL ++  D + YS +    A 
Sbjct: 105 LQVAKGMEYLASK-KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAK 163

Query: 68  TPPEYM-----RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL 122
            P ++M     +T + T +S V+SFG +L +L++ +  PP   +D      +LL     L
Sbjct: 164 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVDSFDITVYLLQGRRLL 222

Query: 123 EGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           +  +  D    L  +   C   +   RP    LV
Sbjct: 223 QPEYCPD---PLYEVMLSCWHPKPEMRPTFSELV 253

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 23/179 (12%)

Query: 1   MKWAMRLRVALYLAQALEY--CSSKGRALYHDLNAYRILFDKDGNPRL--SSFGLMKNSR 56
           + W  R ++A+ +A+AL +  C      +  +L+  +I+ D    P L  S  GL+    
Sbjct: 777 LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLL--CT 834

Query: 57  DGKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHAL-----DLIRS 111
           D K + ++ A+  PE   T  +T +S +Y FG +L++LL+GK   P+ A       ++  
Sbjct: 835 DTKCFISS-AYVAPETRETKDITEKSDIYGFGLILIELLTGKS--PADAEFGVHGSIVEW 891

Query: 112 KNFL-------LLMDSALEGHFS--NDEGTELVRLASRCLQSEARERPNAKSLVISLMS 161
             +        + +D ++ G  S   +E  E++ LA  C  ++   RP A  ++ +L S
Sbjct: 892 ARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLES 950

Length = 968

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 33/185 (17%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QALE+  S    ++ D+ +  IL   DG+ +L+ FG        +S  + +  TP    P
Sbjct: 126 QALEFLHSNQ-VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 184

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE 130
           E +      P+  ++S G M ++++ G+  PP    + +R+   L L+ +       N E
Sbjct: 185 EVVTRKAYGPKVDIWSLGIMAIEMVEGE--PPYLNENPLRA---LYLIATNGTPELQNPE 239

Query: 131 GTELV--RLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPL- 187
               +     +RCL+ +  +R +AK L                    +QH      KPL 
Sbjct: 240 KLSAIFRDFLNRCLEMDVEKRGSAKEL--------------------LQHPFLKIAKPLS 279

Query: 188 SLTPL 192
           SLTPL
Sbjct: 280 SLTPL 284

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 19/168 (11%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
            AL+Y    G  ++ D+ A  IL    GN +L  FG+        S  +    TP    P
Sbjct: 112 VALKYIHKVG-VIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAP 170

Query: 71  EYMRTGRVTPESV-VYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA---LEG-H 125
           E +  G+       ++S G  + ++ +G   PP   +D  R+   +L+  S    LE   
Sbjct: 171 EVITEGKYYDTKADIWSLGITIYEMATGN--PPYSDVDAFRA--MMLIPKSKPPRLEDNG 226

Query: 126 FSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVL 173
           +S      L    + CL  E +ER +A+ L+ S   ++  ++ P  +L
Sbjct: 227 YS----KLLREFVAACLDEEPKERLSAEELLKSKW-IKAHSKTPVSIL 269

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 12/108 (11%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           R   Y A+    L++   KG  +Y DL    +L DKDG+ +++ FG+ K + +G+  ++ 
Sbjct: 97  RARFYAAEIICGLQFLHKKG-IIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKAST 155

Query: 65  LAFTP----PEYMRTGRVTPESV-VYSFGTMLLDLLSGKHIPPSHALD 107
              TP    PE ++ G+   ESV  +SFG +L ++L G+   P H  D
Sbjct: 156 FCGTPDYIAPEILK-GQKYNESVDWWSFGVLLYEMLIGQ--SPFHGED 200

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL---MKNSRDGKSY 61
           R   Y AQ    LE+   + R +Y DL    +L D  GN R+S  GL   +K  +  K  
Sbjct: 96  RAIFYAAQIICGLEHLHQR-RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGR 154

Query: 62  STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGK 98
           +    +  PE ++          ++ G  L ++++G+
Sbjct: 155 AGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGR 191

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS-RDGKSYST 63
           R   Y A+   AL +   KG  +Y DL    +L D +G+ +L+ FG+ K    +GK+ ST
Sbjct: 97  RARFYAAEITSALMFLHDKG-IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTST 155

Query: 64  NLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP 101
               TP    PE ++     P    ++ G +L ++L G H P
Sbjct: 156 -FCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCG-HAP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 29/164 (17%)

Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL-MKNSRDGKSYSTNLAF 67
           V   + +AL +  S  + ++ DL A  IL   DG+ +L+ FG+  KN    +   T +  
Sbjct: 108 VCRQMLEALNFLHSH-KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIG- 165

Query: 68  TP----PEYM--RTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIR-------S 111
           TP    PE +   T +  P   ++ ++S G  L++L   +  PP H L+ +R       S
Sbjct: 166 TPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQME--PPHHELNPMRVLLKILKS 223

Query: 112 KNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
           +   L   S     +S+     L      CL  +  +RP A  L
Sbjct: 224 EPPTLDQPS----KWSSSFNDFL----KSCLVKDPDDRPTAAEL 259

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 28/114 (24%)

Query: 12  YLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK-------NSRDGKSY 61
           Y+A+   ALEY  S G  ++ DL    IL D +G+ +L+ FGL K        + +    
Sbjct: 98  YIAEIVLALEYLHSNG-IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEK 156

Query: 62  STNLAFTPPEYMRTGRVTPESVV----------YSFGTMLLDLLSGKHIPPSHA 105
                   P+Y+      PE ++          +S G +L + L G  IPP H 
Sbjct: 157 EDKRIVGTPDYI-----APEVILGQGHSKTVDWWSLGCILYEFLVG--IPPFHG 203

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 16/149 (10%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           Q LEY  S+   ++ D+ +  IL  KDG+ +L+ FG        KS   ++  TP    P
Sbjct: 127 QGLEYLHSQNV-IHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAP 185

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGK--HI--PPSHALDLIRSKNFLLLMDSALEGHF 126
           E ++     P+  ++S G M +++  G+  ++  PP  AL LI +K    L +      +
Sbjct: 186 EVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEK---W 242

Query: 127 SNDEGTELVRLASRCLQSEARERPNAKSL 155
           S     E     ++CL  +  +RP+A+ L
Sbjct: 243 SP----EFKDFLNKCLVKDPEKRPSAEEL 267

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 30/162 (18%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST-----NLAF 67
           + + + Y  SK + ++ DL A   L D  G  ++S FGL +   D +  S+      + +
Sbjct: 109 VCEGMAYLESK-QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 167

Query: 68  TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS 127
           +PPE +   + + +S V++FG ++ ++ S   +P            +    +S      S
Sbjct: 168 SPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMP------------YERFNNSETVEKVS 215

Query: 128 NDEGTELVR--LASR--------CLQSEARERPNAKSLVISL 159
             +G  L R  LAS         C   +A ERP  + L+ S+
Sbjct: 216 --QGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSI 255

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 22/159 (13%)

Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           V L + +AL +  ++G  ++ D+ +  IL   DG  +LS FG             +L  T
Sbjct: 120 VCLAVLKALSFLHAQG-VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGT 178

Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIRSKNFLLLMDS 120
           P    PE +       E  ++S G M+++++ G+    + PP  A+  IR          
Sbjct: 179 PYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRD--------- 229

Query: 121 ALEGHFSNDE---GTELVRLASRCLQSEARERPNAKSLV 156
                   +       L     R L  +  +R  A  L+
Sbjct: 230 -NLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELL 267

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 8   RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--GKSYSTNL 65
           +V++ + + L Y   K + ++ D+    IL +  G  +L  FG+     D    S+    
Sbjct: 107 KVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTR 166

Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKH-IPPSHALDL 108
           ++  PE ++    + +S ++S G  L++L  G++ IPP  A +L
Sbjct: 167 SYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKEL 210

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 22/97 (22%)

Query: 16  ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRT 75
           ALEY  SK   +Y DL    IL DK+G+ +L+ FG  K  RD ++++  L  T PEY+  
Sbjct: 113 ALEYLHSKE-IVYRDLKPENILLDKEGHIKLTDFGFAKKLRD-RTWT--LCGT-PEYL-- 165

Query: 76  GRVTPESVV----------YSFGTMLLDLLSGKHIPP 102
               PE +           ++ G ++ ++L G   PP
Sbjct: 166 ---APEVIQSKGHNKAVDWWALGILIYEMLVG--YPP 197

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 21/154 (13%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN-LAFTPPE 71
           +A  +EY SSK   ++ DL A   + +++ N  ++ FGL K   +G  Y    +A  P +
Sbjct: 121 IASGMEYLSSK-SFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVK 179

Query: 72  YMR----TGRV-TPESVVYSFGTMLLDLLSGKHIP-----PSHALDLIRSKNFLLLMDSA 121
           ++       RV T +S V+SFG  + ++ +    P      S   D +R  N L      
Sbjct: 180 WIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRLKQPPDC 239

Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
           L+G +S         L S C     ++RP+ ++L
Sbjct: 240 LDGLYS---------LMSSCWLLNPKDRPSFETL 264

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 17/186 (9%)

Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY--STN--- 64
           A  +A+ +EY +S+ + ++ DL A  +L  +D   +++ FGL ++  +   Y  +TN   
Sbjct: 140 AYQVARGMEYLASQ-KCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRL 198

Query: 65  -LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE 123
            + +  PE +     T +S V+SFG +L ++ +   +  S    +   + F LL     E
Sbjct: 199 PVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFT---LGGSPYPGIPVEELFKLLK----E 251

Query: 124 GHFSNDEGT---ELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHET 180
           GH  +       EL  +   C  +   +RP  K LV  L  +        Y+ L +  E 
Sbjct: 252 GHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVTSTDEYLDLSVPFEQ 311

Query: 181 APSTKP 186
                P
Sbjct: 312 YSPGCP 317

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 21/166 (12%)

Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN-- 64
           L +A+ +A  +EY SS    ++ DL A  IL  +  + ++S  GL +       Y     
Sbjct: 127 LHIAIQIAAGMEYLSSH-FFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPK 185

Query: 65  ----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP-----PSHALDLIRSKNFL 115
               + + PPE +  G+ + +S ++SFG +L ++ S    P         ++++R +  L
Sbjct: 186 SLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLL 245

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS 161
                      S D    +  L + C Q     RP  K +   L S
Sbjct: 246 PC---------SEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS 282

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP 69
           A  +A AL Y  S    +Y DL    IL D  G+  L+ FGL K   +    ++    TP
Sbjct: 102 AAEIASALGYLHSL-NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTP 160

Query: 70  ----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALD 107
               PE +R          +  G +L ++L G  +PP ++ D
Sbjct: 161 EYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYG--LPPFYSRD 200

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)

Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY--STN--- 64
           A  +A+ +EY +SK + ++ DL A  +L  +D   +++ FGL ++      Y  +TN   
Sbjct: 146 AYQVARGMEYLASK-KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRL 204

Query: 65  -LAFTPPEYMRTGRVTPESVVYSFGTMLLDL--LSGKHIPPSHALDLIRSKNFLLLMDSA 121
            + +  PE +     T +S V+SFG +L ++  L G   P     +L     F LL    
Sbjct: 205 PVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEEL-----FKLLK--- 256

Query: 122 LEGHFSNDEGT---ELVRLASRCLQSEARERPNAKSLVISL 159
            EGH  +       EL  +   C  +   +RP  K LV  L
Sbjct: 257 -EGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL 296

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL-MNDMPQEALGDAMQAQ 297
           K  G+  F+  D+  AI+ Y + ++     +   Y    L+YL +    +EAL D  +A 
Sbjct: 7   KNLGNALFKLGDYDEAIEAYEKALELDPD-NAEAYYNLALAYLKLGKDYEEALEDLEKAL 65

Query: 298 VVSP 301
            + P
Sbjct: 66  ELDP 69

Length = 69

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLA------FT 68
           + L Y  SKG  L+ DL A  +L D DG  ++S FG+ K S D      N++      + 
Sbjct: 119 EGLAYLHSKG-ILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWM 177

Query: 69  PPEYMRTGRVTPESVV--YSFGTMLLDLLSGK 98
            PE + +      + V  +S G ++L++ +G+
Sbjct: 178 APEVIHSYSQGYSAKVDIWSLGCVVLEMFAGR 209

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 19/178 (10%)

Query: 8   RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAF 67
           ++A+ + +ALEY  SK   ++ D+    +L +++G  +L  FG+     D  + + +   
Sbjct: 107 KIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAGC 166

Query: 68  TPPEYMRTGRVTPE---------SVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM 118
            P  YM   R+ PE         S V+S G  +++L +G+    S      + K  +   
Sbjct: 167 KP--YMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEP 224

Query: 119 DSAL-EGHFSNDEGTELVRLASRCLQSEARERPNAKSL---VISLMSLQKEAEVPSYV 172
              L    FS     E     ++CL+   +ERPN   L       + L K  +V S+V
Sbjct: 225 SPQLPAEKFS----PEFQDFVNKCLKKNYKERPNYPELLQHPFFELHLSKNTDVASFV 278

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 8   RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--GKSYSTNL 65
           +V++ + + L Y   K + ++ D+    IL +  G  +L  FG+     D    S+    
Sbjct: 107 KVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTR 166

Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKH-IPPSHALDLIRSKNFLLLMDSALEG 124
           ++  PE ++    + +S ++S G  L+++  G++ IPP  A      K   L+    +EG
Sbjct: 167 SYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDA------KELELMFGCPVEG 220

Query: 125 HFSNDEGTELVRLASRCLQS 144
             +  E +   R   R L S
Sbjct: 221 DPAESETSPRPRPPGRPLSS 240

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 11/95 (11%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK----NSRDGK------SYSTN 64
           + L Y  ++G  ++ D+    IL D  G  ++S FG+ K    NS   K      S   +
Sbjct: 117 KGLNYLHNRG-IIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGS 175

Query: 65  LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKH 99
           + +  PE ++    T ++ ++S G +++++L+GKH
Sbjct: 176 VFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKH 210

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 8   RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--GKSYSTNL 65
           ++A+ + + L Y   K + ++ D+    IL +  G  +L  FG+     +   K++    
Sbjct: 104 KIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTS 163

Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE-- 123
           ++  PE ++    + +S ++S G  L++L +G+   P              L+   +   
Sbjct: 164 SYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDP---PDGIFELLQYIVNEP 220

Query: 124 ------GHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
                 G FS D         + CL  + RERP+ K L
Sbjct: 221 PPRLPSGKFSPD----FQDFVNLCLIKDPRERPSYKEL 254

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK--NSRDGKSYSTN----LA 66
           L + L YC  K   L+ D+    IL +  G  +L+ FGL +  NS + + Y TN    L 
Sbjct: 125 LLEGLNYCHKKN-FLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPY-TNKVITLW 182

Query: 67  FTPPEYMR-TGRVTPESVVYSFGTMLLDLLSGKHI 100
           + PPE +    R  P   V+S G +L +L + K I
Sbjct: 183 YRPPELLLGEERYGPAIDVWSCGCILGELFTKKPI 217

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 22/104 (21%)

Query: 12  YLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           YL++   ALE+   +G  +Y DL    IL D  G+ +L+ FGL K S    + +     T
Sbjct: 105 YLSEISLALEHLHQQG-IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGT 163

Query: 69  PPEYMRTGRVTPESVV----------YSFGTMLLDLLSGKHIPP 102
             EYM      PE ++          +S G ++ D+L+G   PP
Sbjct: 164 -IEYM-----APEILMRSGHGKAVDWWSLGALMYDMLTGA--PP 199

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS-RDGKSYSTNLAFTPPE 71
           +  AL+Y  S+   +Y DL    ++ DKDG+ +++ FGL K   +DG +  T      PE
Sbjct: 104 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCG--TPE 161

Query: 72  YM 73
           Y+
Sbjct: 162 YL 163

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 60/205 (29%)

Query: 1   MKWAMRL------RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL--- 51
           +K A R+      ++++ + + L Y   K + ++ D+    IL +  G  +L  FG+   
Sbjct: 90  LKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ 149

Query: 52  ----MKNSRDG-KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKH-IPP--- 102
               M NS  G +SY +      PE ++    T +S ++S G  L+++  G++ IPP   
Sbjct: 150 LIDSMANSFVGTRSYMS------PERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDA 203

Query: 103 ------------------------SHALDLIRSKNFLLLMDSALE--------GHFSNDE 130
                                    H  D  R      L+D  +         G FS   
Sbjct: 204 KELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFS--- 260

Query: 131 GTELVRLASRCLQSEARERPNAKSL 155
             E      +CL+   +ER + K L
Sbjct: 261 -DEFQDFVDKCLKKNPKERADLKEL 284

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           V L + +AL Y  ++G  ++ D+ +  IL   DG  +LS FG             +L  T
Sbjct: 123 VCLSVLRALSYLHNQG-VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGT 181

Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIR 110
           P    PE +       E  ++S G M+++++ G+    + PP  A+  IR
Sbjct: 182 PYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIR 231

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 16/149 (10%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           + LEY  S  + ++ D+ A  IL +++G  +L+ FG+     D  +    +  TP    P
Sbjct: 110 KGLEYLHSN-KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAP 168

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIRSKNFLLLMDSALEGHF 126
           E ++      ++ ++S G   +++  GK     I P  A+ +I +K    L D      +
Sbjct: 169 EVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDP---EKW 225

Query: 127 SNDEGTELVRLASRCLQSEARERPNAKSL 155
           S     E      +CL  +  ERP+A  L
Sbjct: 226 S----PEFNDFVKKCLVKDPEERPSAIQL 250

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 27/156 (17%)

Query: 16  ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRT 75
           AL Y   K   ++ D+    IL D  GN +L  FG+     D K+ + +       YM  
Sbjct: 126 ALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAA--YMAP 183

Query: 76  GRVTPE---------SVVYSFGTMLLDLLSGKHIPPSH-------ALDLIRSKNFLLLMD 119
            R+ P          + V+S G  L++L +G+   P          L  I  +    L  
Sbjct: 184 ERIDPPDPNPKYDIRADVWSLGISLVELATGQF--PYKNCKTEFEVLTKILQEEPPSL-- 239

Query: 120 SALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
                 FS D           CL  + R+RP  + L
Sbjct: 240 -PPNEGFSPD----FCSFVDLCLTKDHRKRPKYREL 270

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 18/161 (11%)

Query: 6   RLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST- 63
           +L VA  LA AL +   KG  L H ++ A  +L  ++ + +  +   +K S  G S +  
Sbjct: 102 KLEVAKQLAWALHFLEDKG--LTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVL 159

Query: 64  -------NLAFTPPEYMRTGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL 115
                   + + PPE +   + ++  +  +SFGT L ++ SG   P S ALD   S+  L
Sbjct: 160 PKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLS-ALD---SQKKL 215

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
              +   +      + TEL  L ++C+  E   RP+ ++++
Sbjct: 216 QFYEDRHQ--LPAPKWTELANLINQCMDYEPDFRPSFRAII 254

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK--NSRDGKSYSTNLAFT-- 68
           L + L+Y  S G  L+ D+    IL + DG  +L+ FGL +    R+   Y TN   T  
Sbjct: 109 LLEGLQYLHSNG-ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADY-TNRVITLW 166

Query: 69  --PPE-YMRTGRVTPESVVYSFGTMLLDLLSGKHIPP----SHALDLI 109
             PPE  +   R  PE  ++S G +L +L  GK I         L+ I
Sbjct: 167 YRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKI 214

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 12/160 (7%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN------LA 66
           +A+ +E+ +S+ + ++ DL A  IL  ++   ++  FGL ++      Y         L 
Sbjct: 183 VARGMEFLASR-KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLK 241

Query: 67  FTPPEYMRTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGH 125
           +  PE +     T +S V+SFG +L ++ S G    P   ++    + F   +       
Sbjct: 242 WMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIN----EEFCQRLKDGTRMR 297

Query: 126 FSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
              +   E+ R+   C Q + +ERP   +LV  L  L +E
Sbjct: 298 APENATPEIYRIMLACWQGDPKERPTFSALVEILGDLLQE 337

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY--STN--- 64
           A  +A+ +EY  S+ R ++ DL A  +L  +D   +++ FGL +   D   Y  ++N   
Sbjct: 140 AYQVARGMEYLESR-RCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRL 198

Query: 65  -LAFTPPEYMRTGRVTPESVVYSFGTMLLDL--LSGKHIP--PSHALDLIRSKNFLLLMD 119
            + +  PE +     T +S V+SFG ++ ++  L G   P  P   L       F LL  
Sbjct: 199 PVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEEL-------FKLLR- 250

Query: 120 SALEGHFSNDEGT---ELVRLASRCLQSEARERPNAKSLV 156
              EGH  +       EL  L   C  +   +RP  K LV
Sbjct: 251 ---EGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLV 287

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 16/153 (10%)

Query: 27  LYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST--NLAFTPPEYMRTGRVTPESV- 83
           +Y DL    IL D+ G+ R+S  GL  +    K +++     +  PE ++ G     S  
Sbjct: 119 VYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSAD 178

Query: 84  VYSFGTMLLDLLSGKHIP--PSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASR- 140
            +S G ML  LL G H P       D        L M   L   FS +  + L  L  R 
Sbjct: 179 WFSLGCMLFKLLRG-HSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRD 237

Query: 141 ------CL---QSEARERPNAKSLVISLMSLQK 164
                 CL     E +E P  +SL   ++ LQK
Sbjct: 238 VNRRLGCLGRGAQEVKEHPFFRSLDWQMVFLQK 270

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 17/165 (10%)

Query: 3   WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYS 62
           +  +L +A+   + L          Y +L +   L  ++   ++   GL K        +
Sbjct: 121 FKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKN 180

Query: 63  TN-LAFTPPEYMRT--GRVTPESVVYSFGTMLLDLLSGKHIPPSHA-----LDLIRSKNF 114
            N + +   + +       T +  +YS G +L ++ +GK IP  +       DLI +KN 
Sbjct: 181 VNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGK-IPFENLTTKEIYDLIINKNN 239

Query: 115 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
            L +   L+         E+  +   C   ++ +RPN K ++ +L
Sbjct: 240 SLKLP--LDCP------LEIKCIVEACTSHDSIKRPNIKEILYNL 276

Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.98
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.98
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.97
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.97
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.97
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.97
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.97
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.97
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.97
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.97
PHA02988	283	hypothetical protein; Provisional	99.97
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.97
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.97
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.97
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.97
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.97
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.97
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.97
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.97
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.97
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.97
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.97
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.97
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.96
PHA02882	294	putative serine/threonine kinase; Provisional	99.96
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.96
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.96
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.96
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.96
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.96
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.96
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.96
PTZ00036	440	glycogen synthase kinase; Provisional	99.96
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.96
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.96
PTZ00283	496	serine/threonine protein kinase; Provisional	99.96
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.96
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.96
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.96
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.96
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.96
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.96
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.96
PHA03212	391	serine/threonine kinase US3; Provisional	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.96
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.96
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.96
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.96
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.96
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.96
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.96
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.96
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.96
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.96
PTZ00284	467	protein kinase; Provisional	99.96
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.96
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.96
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.96
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.96
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.96
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.96
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.96
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.96
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.96
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.96
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.96
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.96
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.96
PTZ00267	478	NIMA-related protein kinase; Provisional	99.96
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.96
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.96
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.96
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.96
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.96
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.96
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.96
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.96
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.96
KOG0605	550	consensus NDR and related serine/threonine kinases	99.96
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.96
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.96
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.96
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.96
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.96
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.96
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.96
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.96
KOG0589	426	consensus Serine/threonine protein kinase [General	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.96
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.96
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.96
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.96
PHA03207	392	serine/threonine kinase US3; Provisional	99.96
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.96
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.96
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.96
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.96
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.96
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.96
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.96
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.96
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.96
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.96
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.96
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.96
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.96
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.96
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.96
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.96
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.96
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.96
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.96
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.96
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.96
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.96
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.96
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.96
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.96
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.96
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.96
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.96
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.95
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.95
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.95
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.95
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.95
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.95
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.95
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.95
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.95
PHA03209	357	serine/threonine kinase US3; Provisional	99.95
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.95
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.95
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.95
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.95
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.95
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.95
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.95
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.95
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.95
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.95
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.95
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.95
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.95
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.95
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.95
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.95
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.95
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.95
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.95
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.95
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.95
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.95
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.95
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.95
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.95
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.95
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.95
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.95
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.95
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.95
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.95
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.95
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.95
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.95
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.95
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.95
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.95
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.95
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.95
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.95
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.95
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.95
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.95
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.95
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.95
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.95
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.95
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.95
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.95
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.95
PHA03210	501	serine/threonine kinase US3; Provisional	99.95
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.95
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.95
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.95
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.95
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.95
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.95
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.95
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.95
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.95
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.95
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.95
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.95
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.95
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.95
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.95
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.95
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.95
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.95
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.95
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.95
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.95
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.95
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.95
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.95
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.95
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.95
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.95
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.95
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.95
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.95
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.94
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.94
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.94
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.94
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.94
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.94
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.94
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.94
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.94
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.94
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.94
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.94
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.94
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.94
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.94
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.94
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.94
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.94
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.94
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.94
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.94
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.94
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.94
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.94
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.94
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.94
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.94
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.94
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.94
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.94
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.94
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.94
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.94
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.94
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.94
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.94
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.94
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.94
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.94
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.94
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.94
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.94
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.94
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.94
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.94
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.94
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.94
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.94
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.94
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.94
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.94
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.94
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.94
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.94
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.94
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.94
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.94
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.94
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.94
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.94
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.94
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.94
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.94
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.94
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.94
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.94
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.94
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.94
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.94
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.94
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.94
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.94
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.94
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.94
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.94
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.94
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.94
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.94
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.94
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.94
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.94
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.94
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.93
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.93
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.93
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.93
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.93
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.93
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.93
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.93
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.93
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.93
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.93
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.93
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.93
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.93
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.93
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.93
KOG0584	632	consensus Serine/threonine protein kinase [General	99.93
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.93
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.93
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.93
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.93
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.93
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.93
KOG0610	459	consensus Putative serine/threonine protein kinase	99.93
PLN00009	294	cyclin-dependent kinase A; Provisional	99.93
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.93
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.93
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.93
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.93
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.93
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.93
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.93
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.93
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.93
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.93
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.93
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.93
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.92
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.92
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.92
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.92
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.92
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.92
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.92
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.92
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.92
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.92
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.92
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.91
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.91
KOG0553	304	consensus TPR repeat-containing protein [General f	99.91
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.9
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.9
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.9
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.9
KOG3653	534	consensus Transforming growth factor beta/activin	99.9
KOG0586	596	consensus Serine/threonine protein kinase [General	99.9
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.9
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.9
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.89
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.89
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.89
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.89
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.89
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.89
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.89
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.88
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.88
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.88
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.87
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.87
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.86
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.83
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.83
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.8
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.77
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.77
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.76
KOG4234	271	consensus TPR repeat-containing protein [General f	99.76
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.75
KOG1152	772	consensus Signal transduction serine/threonine kin	99.75
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.75
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.74
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.73
PRK15359	144	type III secretion system chaperone protein SscB;	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.7
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.69
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.69
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.68
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.68
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.66
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.65
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.64
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.63
PRK11189	296	lipoprotein NlpI; Provisional	99.62
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.61
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.61
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.59
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.58
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.55
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.54
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.53
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.52
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.52
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.49
KOG4555	175	consensus TPR repeat-containing protein [Function	99.49
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.47
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.47
KOG1125	579	consensus TPR repeat-containing protein [General f	99.45
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.44
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.44
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.4
PRK12274	218	serine/threonine protein kinase; Provisional	99.39
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.39
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.39
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.38
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.36
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.35
PRK09188	365	serine/threonine protein kinase; Provisional	99.35
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.35
KOG1126	638	consensus DNA-binding cell division cycle control	99.35
PRK15331	165	chaperone protein SicA; Provisional	99.34
KOG1126	638	consensus DNA-binding cell division cycle control	99.32
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.32
PRK15359	144	type III secretion system chaperone protein SscB;	99.32
PRK12370	553	invasion protein regulator; Provisional	99.31
PLN02789	320	farnesyltranstransferase	99.27
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.26
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.26
PRK12370	553	invasion protein regulator; Provisional	99.26
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.26
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.24
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.24
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.23
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.23
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.23
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.21
PRK10803	263	tol-pal system protein YbgF; Provisional	99.21
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.21
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.2
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.2
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.2
PRK11189	296	lipoprotein NlpI; Provisional	99.2
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.19
COG4248	637	Uncharacterized protein with protein kinase and he	99.16
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.16
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.15
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.12
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.12
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.12
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.11
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.08
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.07
KOG2137	700	consensus Protein kinase [Signal transduction mech	99.06
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.06
PF13371	73	TPR_9: Tetratricopeptide repeat	99.06
PLN02789	320	farnesyltranstransferase	99.05
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.04
PF13512	142	TPR_18: Tetratricopeptide repeat	99.04
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.03
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.03
PF13371	73	TPR_9: Tetratricopeptide repeat	99.02
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.02

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-37  Score=263.90  Aligned_cols=160  Identities=19%  Similarity=0.304  Sum_probs=131.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCCC
Q 019475            2 KWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~   78 (340)
                      +....-+|+.+|++||.|||+ ++ ||||||||+|||++..|.|||||||.+.....+  .+.+||..|||||.+.+..|
T Consensus       176 ~E~~L~~ia~~VL~GL~YLh~~~~-IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Y  254 (364)
T KOG0581|consen  176 PEPVLGKIARAVLRGLSYLHEERK-IIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESY  254 (364)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhccC-eeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccccccccccChhhhcCCcC
Confidence            455667899999999999996 77 999999999999999999999999999876554  67899999999999999999


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCch-hHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSND-EGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      +.++||||||++++|+.+|+.|++...............+-.......|.. ++++++.||..||++||.+|||+.++++
T Consensus       255 s~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  255 SVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQ  334 (364)
T ss_pred             CcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            999999999999999999998877642111222222222222233345554 8899999999999999999999999999


Q ss_pred             HHHhh
Q 019475          158 SLMSL  162 (340)
Q Consensus       158 ~l~~~  162 (340)
                      |-.-.
T Consensus       335 Hpfi~  339 (364)
T KOG0581|consen  335 HPFIK  339 (364)
T ss_pred             CHHHh
Confidence            86543

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-34  Score=256.09  Aligned_cols=163  Identities=28%  Similarity=0.410  Sum_probs=138.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCC---C-CCcccCCccCCccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRD---G-KSYSTNLAFTPPEYMR-   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~---~-~~~~~~~~y~aPE~~~-   74 (340)
                      |+|..+++|+.||+.||.|||++++||||||||+|||++.++ ++||+|||+++....   . +...||+.|||||++. 
T Consensus       139 l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~  218 (362)
T KOG0192|consen  139 LPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRG  218 (362)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcC
Confidence            688999999999999999999998689999999999999998 999999999986553   2 2357899999999999 


Q ss_pred             -cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 -TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 -~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                       ...++.++||||||+++|||+||..||.....    ......+.....+...+..+++.+..||.+||..||..||++.
T Consensus       219 ~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~----~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~  294 (362)
T KOG0192|consen  219 EKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP----VQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFL  294 (362)
T ss_pred             CCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH----HHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHH
Confidence             56899999999999999999999988876532    1222333344455566667889999999999999999999999


Q ss_pred             HHHHHHHhhhhhcc
Q 019475          154 SLVISLMSLQKEAE  167 (340)
Q Consensus       154 e~l~~l~~~~~~~~  167 (340)
                      +++..|+.+.....
T Consensus       295 ei~~~l~~~~~~~~  308 (362)
T KOG0192|consen  295 EIVSRLESIMSHIS  308 (362)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999998877543

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.8e-34  Score=234.37  Aligned_cols=155  Identities=19%  Similarity=0.282  Sum_probs=129.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC---CCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK---GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~---~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~   73 (340)
                      ++..++++++.|++.||.+||.+   |.|+||||||.||+++.+|.|||+|||+++.+...    .+.+|||.||+||.+
T Consensus       121 ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i  200 (375)
T KOG0591|consen  121 IPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERI  200 (375)
T ss_pred             CchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHH
Confidence            46788999999999999999993   34999999999999999999999999999987765    356899999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCC-chhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS-NDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+.+|+++|||||+||++|||+.-++||.++...     .+.+.+...-..+.| .-.+.++..||..|+..||+.||+.
T Consensus       201 ~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~-----~L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  201 HESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLL-----SLCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDT  275 (375)
T ss_pred             hcCCCCcchhHHHHHHHHHHHHhcCCCcccccHH-----HHHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCc
Confidence            9999999999999999999999999999887332     222223222222334 5678899999999999999999996


Q ss_pred             HHHHHHHH
Q 019475          153 KSLVISLM  160 (340)
Q Consensus       153 ~e~l~~l~  160 (340)
                      ..+++.+.
T Consensus       276 ~~~v~di~  283 (375)
T KOG0591|consen  276 VPYVQDIQ  283 (375)
T ss_pred             chHHHHHH
Confidence            55555443

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-34  Score=244.63  Aligned_cols=161  Identities=23%  Similarity=0.381  Sum_probs=128.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-CCCeEEecccCcccCCC-------CCCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRD-------GKSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~-------~~~~~~~~~y~aPE~   72 (340)
                      |+...+..+.+||++||.|||++| ||||||||+|||++. ++.+||+|||.++....       .....||+.|||||+
T Consensus       114 l~E~~v~~ytr~iL~GL~ylHs~g-~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEv  192 (313)
T KOG0198|consen  114 LPEPLVRRYTRQILEGLAYLHSKG-IVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEV  192 (313)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchh
Confidence            577889999999999999999999 999999999999999 69999999999886552       234678999999999


Q ss_pred             cccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           73 MRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        73 ~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      +..+ ....++|||||||++.||+||.+|+... .  ........+......+.+|...+.+..+|+.+|+..+|+.|||
T Consensus       193 i~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~-~--~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpt  269 (313)
T KOG0198|consen  193 IRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF-F--EEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPT  269 (313)
T ss_pred             hcCCCcCCccchhhhcCCEEEeccCCCCcchhh-c--chHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCcccCcC
Confidence            9953 3445999999999999999998777542 0  0111112222222233677788999999999999999999999


Q ss_pred             HHHHHHHHHhhhhh
Q 019475          152 AKSLVISLMSLQKE  165 (340)
Q Consensus       152 ~~e~l~~l~~~~~~  165 (340)
                      +.+++.|.......
T Consensus       270 a~eLL~hpf~~~~~  283 (313)
T KOG0198|consen  270 AEELLEHPFLKQNS  283 (313)
T ss_pred             HHHHhhChhhhccc
Confidence            99999997654433

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-33  Score=247.47  Aligned_cols=149  Identities=21%  Similarity=0.324  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----------------CCcccCCc
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----------------KSYSTNLA   66 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------------~~~~~~~~   66 (340)
                      ...--++.+|+.||+|||++| ||||||||+|||++.++++||+|||.++.+.+.                 .+.+||..
T Consensus       174 ~caR~YAAeIldAleylH~~G-IIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAe  252 (604)
T KOG0592|consen  174 TCARFYAAEILDALEYLHSNG-IIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAE  252 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-ceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeec
Confidence            344568999999999999999 999999999999999999999999999865421                 34689999


Q ss_pred             cCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCC
Q 019475           67 FTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEA  146 (340)
Q Consensus        67 y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p  146 (340)
                      |.+||++.....++.+|||+||||+|.|+.|++||....    +...+.+++.-  .-.+|+..++.+.+||.+.|..||
T Consensus       253 YVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~N----eyliFqkI~~l--~y~fp~~fp~~a~dLv~KLLv~dp  326 (604)
T KOG0592|consen  253 YVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAAN----EYLIFQKIQAL--DYEFPEGFPEDARDLIKKLLVRDP  326 (604)
T ss_pred             ccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCcccc----HHHHHHHHHHh--cccCCCCCCHHHHHHHHHHHccCc
Confidence            999999999999999999999999999999999986642    22334444432  235677888999999999999999


Q ss_pred             CCCCCHHHHHHHH
Q 019475          147 RERPNAKSLVISL  159 (340)
Q Consensus       147 ~~Rps~~e~l~~l  159 (340)
                      ++|+|..+|.+|.
T Consensus       327 ~~Rlt~~qIk~Hp  339 (604)
T KOG0592|consen  327 SDRLTSQQIKAHP  339 (604)
T ss_pred             cccccHHHHhhCc
Confidence            9999999999874

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=8e-34  Score=234.69  Aligned_cols=156  Identities=17%  Similarity=0.329  Sum_probs=123.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC-CC---CCcccCCccCCcccccc-C
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR-DG---KSYSTNLAFTPPEYMRT-G   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~-~~---~~~~~~~~y~aPE~~~~-~   76 (340)
                      +.+...+++.|++.|+.|||+++ +|||||||+|||++.+|.+||||||+++... ++   +.++.|.+|+|||.+.| .
T Consensus        99 ~~~~vk~~l~Q~l~ai~~cHk~n-~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDt  177 (396)
T KOG0593|consen   99 PSELVKKYLYQLLKAIHFCHKNN-CIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDT  177 (396)
T ss_pred             CHHHHHHHHHHHHHHhhhhhhcC-eecccCChhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccC
Confidence            55678899999999999999999 9999999999999999999999999999876 33   34577999999999998 6


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh----------hhhhHhhhc--cccC-------------CCCchhH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS----------KNFLLLMDS--ALEG-------------HFSNDEG  131 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~-------------~~~~~~~  131 (340)
                      +|+...|||++||++.||++|.+.||+...-..-.          ....+++..  .+.+             ..-+..+
T Consensus       178 qYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s  257 (396)
T KOG0593|consen  178 QYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKIS  257 (396)
T ss_pred             cCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccch
Confidence            79999999999999999999999888863111000          001111110  0000             0112345


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ..+.+|+..||..||.+|++.++++.|
T Consensus       258 ~~~ld~~k~cL~~dP~~R~sc~qll~H  284 (396)
T KOG0593|consen  258 NVLLDLLKKCLKMDPDDRLSCEQLLHH  284 (396)
T ss_pred             HHHHHHHHHHhcCCccccccHHHHhcC
Confidence            678999999999999999999999976

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-33  Score=248.15  Aligned_cols=154  Identities=19%  Similarity=0.329  Sum_probs=130.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      |+..+...|+++++.||+|||.+| |||||||.+|||++.+|.+||+|||+|..+...    .+.+||+.|||||++...
T Consensus       366 ~~E~qIA~Icre~l~aL~fLH~~g-IiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk  444 (550)
T KOG0578|consen  366 MTEGQIAAICREILQGLKFLHARG-IIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRK  444 (550)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcc-eeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhc
Confidence            467788999999999999999999 999999999999999999999999999877654    467899999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .|+++.||||||++++||+.|.+||..+.    ....+..+... ...-..+...+..+++|+.+||+.|+++|+++.|+
T Consensus       445 ~YG~KVDIWSLGIMaIEMveGEPPYlnE~----PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eL  520 (550)
T KOG0578|consen  445 PYGPKVDIWSLGIMAIEMVEGEPPYLNEN----PLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKEL  520 (550)
T ss_pred             ccCccccchhhhhHHHHHhcCCCCccCCC----hHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHH
Confidence            99999999999999999999999887542    11112222222 22233566788999999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      |+|-
T Consensus       521 L~Hp  524 (550)
T KOG0578|consen  521 LEHP  524 (550)
T ss_pred             hcCh
Confidence            9984

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.1e-34  Score=243.91  Aligned_cols=153  Identities=21%  Similarity=0.254  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC---CCeEEecccCcccCCCC---CCcccCCccCCccccccCCC
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD---GNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~   78 (340)
                      .-.-+++|++.||.|||++| |+||||||+|||+..+   ..+||+|||+++..+..   .+.+||+.|.|||++.+...
T Consensus       277 ~~K~~f~Qll~avkYLH~~G-I~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~  355 (475)
T KOG0615|consen  277 LGKLLFKQLLTAVKYLHSQG-IIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGV  355 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHcC-cccccCCcceEEeccCCcceEEEecccchhhccccceehhhhcCCccccChhheecCCe
Confidence            34568999999999999999 9999999999999876   67999999999987654   57799999999999986653


Q ss_pred             ---CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           79 ---TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        79 ---~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                         ..+.||||+|||+|-+++|.+||.+...+..   -..++....+  ......+++++..+||.+||..||+.|||++
T Consensus       356 ~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~s---l~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~  432 (475)
T KOG0615|consen  356 EYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPS---LKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSAD  432 (475)
T ss_pred             ecccchheeeeccceEEEEeccCCCcccccCCcc---HHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHH
Confidence               3478999999999999999999987643320   1122222222  2233457889999999999999999999999


Q ss_pred             HHHHHHHh
Q 019475          154 SLVISLMS  161 (340)
Q Consensus       154 e~l~~l~~  161 (340)
                      |+++|.|-
T Consensus       433 eaL~hpW~  440 (475)
T KOG0615|consen  433 EALNHPWF  440 (475)
T ss_pred             HHhcChhh
Confidence            99998664

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.1e-33  Score=249.23  Aligned_cols=153  Identities=17%  Similarity=0.242  Sum_probs=129.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      |+..++..+++||+.||.|||+++ |||||||..|++++++.+|||+|||+|.....    ..+.+||+.|.|||++...
T Consensus       115 ltEpEary~l~QIv~GlkYLH~~~-IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~  193 (592)
T KOG0575|consen  115 LTEPEARYFLRQIVEGLKYLHSLG-IIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKS  193 (592)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhcC-ceecccchhheeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhccC
Confidence            466788999999999999999999 99999999999999999999999999987663    2567899999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      ..+..+||||+|||+|.|+.|++||........-    ..+...  .-..|...+.+..+||.++|..+|.+|||+++|+
T Consensus       194 gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety----~~Ik~~--~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL  267 (592)
T KOG0575|consen  194 GHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETY----NKIKLN--EYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVL  267 (592)
T ss_pred             CCCCchhhhhhhhHHHhhhhCCCCcccchHHHHH----HHHHhc--CcccccccCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence            9999999999999999999999998765333221    111111  1234567788999999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      .|-.
T Consensus       268 ~h~F  271 (592)
T KOG0575|consen  268 DHPF  271 (592)
T ss_pred             cCHh
Confidence            8743

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.98  E-value=1.3e-32  Score=233.96  Aligned_cols=150  Identities=22%  Similarity=0.274  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----CCCCcccCCccCCccccccCCC
Q 019475            3 WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~~   78 (340)
                      .....-++.+|+.||.|||++| ||||||||+|||++.+|+++|+|||+|+...    .+.+.+||+.|||||++.+.+|
T Consensus       124 E~~arfYlaEi~lAL~~LH~~g-IiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy  202 (357)
T KOG0598|consen  124 EDRARFYLAEIVLALGYLHSKG-IIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGY  202 (357)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCC-eeeccCCHHHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCC
Confidence            3455668999999999999999 9999999999999999999999999998543    2355689999999999999999


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC----CHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP----NAKS  154 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp----s~~e  154 (340)
                      +..+|.||||+++|||++|.+||.......+.......     -....+.-.+.+.++++.++|..||++|.    ++.+
T Consensus       203 ~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~-----k~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~  277 (357)
T KOG0598|consen  203 DKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKG-----KLPLPPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEE  277 (357)
T ss_pred             CcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcC-----cCCCCCccCCHHHHHHHHHHhccCHHHhcCCCCChHH
Confidence            99999999999999999999999887544332222111     11223334778999999999999999995    5666


Q ss_pred             HHHH
Q 019475          155 LVIS  158 (340)
Q Consensus       155 ~l~~  158 (340)
                      +-.|
T Consensus       278 ik~H  281 (357)
T KOG0598|consen  278 IKRH  281 (357)
T ss_pred             hhcC
Confidence            6554

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=4.8e-32  Score=242.19  Aligned_cols=165  Identities=33%  Similarity=0.577  Sum_probs=138.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC--CceecccCCCCeEEcCCCCeEEecccCcccCCC-CCCc----ccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG--RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-GKSY----STNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~--~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-~~~~----~~~~~y~aPE~~   73 (340)
                      |+|++|++|+.+++.||+|||+..  +||||||||+|||+|.++++||+|||+++.... ....    .||.+|++||+.
T Consensus       171 L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~  250 (361)
T KOG1187|consen  171 LDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYA  250 (361)
T ss_pred             CCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCChhhh
Confidence            689999999999999999999976  599999999999999999999999999977654 3222    789999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcc-----------hhHHhhhhhhhHhhhcccc-CCCCc-hhHHHHHHHHHH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSH-----------ALDLIRSKNFLLLMDSALE-GHFSN-DEGTELVRLASR  140 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~li~~  140 (340)
                      ..+..+.++||||||+++.||++|+.+....           ....+....+.+++++.+. ...+. .....+..+..+
T Consensus       251 ~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~  330 (361)
T KOG1187|consen  251 STGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALR  330 (361)
T ss_pred             ccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999765421           1233444467778888776 45553 567779999999


Q ss_pred             hcccCCCCCCCHHHHHHHHHhhhhh
Q 019475          141 CLQSEARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       141 cl~~~p~~Rps~~e~l~~l~~~~~~  165 (340)
                      |+..+|..||+|.+|++.|..+...
T Consensus       331 C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  331 CLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             HcCcCCCcCcCHHHHHHHHHhhccc
Confidence            9999999999999999998554443

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=3.3e-32  Score=241.69  Aligned_cols=159  Identities=25%  Similarity=0.401  Sum_probs=137.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC--cc---cCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS--YS---TNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~---~~~~y~aPE~~~~   75 (340)
                      ++..+.+.++.|||+|++||++++ +|||||..+||||+.+..+||+|||+++.......  ..   -...|+|||.+..
T Consensus       300 l~~~~Ll~~a~qIaeGM~YLes~~-~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~  378 (468)
T KOG0197|consen  300 LNLPQLLDFAAQIAEGMAYLESKN-YIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNY  378 (468)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhCC-ccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhh
Confidence            345688999999999999999999 99999999999999999999999999995444321  11   2467999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ++++.+||||||||++|||+| |+.|++.     +....+.+.++...+-+.|..++..+.++|..||..+|++|||++.
T Consensus       379 ~~FS~kSDVWSFGVlL~E~fT~G~~py~~-----msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~  453 (468)
T KOG0197|consen  379 GKFSSKSDVWSFGVLLWELFTYGRVPYPG-----MSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFET  453 (468)
T ss_pred             CCcccccceeehhhhHHHHhccCCCCCCC-----CCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHH
Confidence            999999999999999999999 4555544     3556677788888888899999999999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      +...|+.+...
T Consensus       454 L~~~l~~~~~~  464 (468)
T KOG0197|consen  454 LREVLEDFFTS  464 (468)
T ss_pred             HHHHHHHhhhc
Confidence            98888776554

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.97  E-value=2e-31  Score=239.46  Aligned_cols=159  Identities=23%  Similarity=0.377  Sum_probs=127.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |++.+++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....      ....++..|+|||++.
T Consensus       171 l~~~~~~~~~~qi~~aL~~LH~~~-ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  249 (338)
T cd05102         171 LTMEDLICYSFQVARGMEFLASRK-CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIF  249 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhh
Confidence            467889999999999999999999 999999999999999999999999998764322      1234467899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||.......    .+...+........+...++.+.+|+.+||..||.+|||+.
T Consensus       250 ~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~  325 (338)
T cd05102         250 DKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE----EFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFS  325 (338)
T ss_pred             cCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH----HHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence            8889999999999999999997 888876532211    11111111122223455678899999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 019475          154 SLVISLMSLQK  164 (340)
Q Consensus       154 e~l~~l~~~~~  164 (340)
                      ++++.|+.+..
T Consensus       326 el~~~l~~~~~  336 (338)
T cd05102         326 ALVEILGDLLQ  336 (338)
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=8.1e-32  Score=235.11  Aligned_cols=158  Identities=18%  Similarity=0.241  Sum_probs=126.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC---CCCcccCCccCCccccc-cC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD---GKSYSTNLAFTPPEYMR-TG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~---~~~~~~~~~y~aPE~~~-~~   76 (340)
                      |+.+....|+.||+.||+|+|.+| +.|||+||+|||+.....+||+|||+|+....   .+.++.|.+|+|||++. .+
T Consensus       107 fse~~irnim~QilqGL~hiHk~G-fFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~  185 (538)
T KOG0661|consen  107 FSESDIRNIMYQILQGLAHIHKHG-FFHRDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSG  185 (538)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC-cccccCChhheEecccceeEecccccccccccCCCcchhhhcccccchHHhhhcc
Confidence            467888999999999999999999 99999999999999999999999999997654   46678999999999875 56


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHh-----------------hhhhhhHhhhccccCC-------CCchhHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI-----------------RSKNFLLLMDSALEGH-------FSNDEGT  132 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~-------~~~~~~~  132 (340)
                      .|+.+.|||++|||++|+.+-++.||+...-..                 ....+...+.-.+...       .-+..+.
T Consensus       186 ~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~  265 (538)
T KOG0661|consen  186 YYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASS  265 (538)
T ss_pred             ccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCH
Confidence            799999999999999999999999988521110                 0011111111111110       1123678


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ++.++|.+|+.+||.+|||+.++++|.
T Consensus       266 ~~~~li~~ll~WDP~kRpTA~~al~~p  292 (538)
T KOG0661|consen  266 EAASLIERLLAWDPDKRPTASQALQHP  292 (538)
T ss_pred             HHHHHHHHHhcCCCccCccHHHHhcCc
Confidence            899999999999999999999999985

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.97  E-value=2.7e-31  Score=215.97  Aligned_cols=157  Identities=20%  Similarity=0.232  Sum_probs=122.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      |+..+...++.+++.||+|||+++ |+||||||+|+|++.+|.+||+|||+++.+.+..    ..+.|.+|+|||.+.|.
T Consensus        98 l~pa~iK~y~~m~LkGl~y~H~~~-IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGs  176 (318)
T KOG0659|consen   98 LSPADIKSYMLMTLKGLAYCHSKW-ILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGS  176 (318)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhhh-hhcccCCccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccChHHhccc
Confidence            345678899999999999999999 9999999999999999999999999999877542    23678999999999876


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHh----------------------hhccccCCCCchhHHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL----------------------MDSALEGHFSNDEGTE  133 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~  133 (340)
                       .|+...||||.|||+.||+-|.+.|++...-..-...+..+                      .+.......-...+.+
T Consensus       177 r~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d  256 (318)
T KOG0659|consen  177 RQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSD  256 (318)
T ss_pred             hhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHH
Confidence             48999999999999999999998887753111101111110                      0111111122245677


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ..+|+.+||.++|.+|+|+.|+++|
T Consensus       257 ~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  257 ALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             HHHHHHhhhccCchhcccHHHHhcc
Confidence            8999999999999999999999987

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.97  E-value=3.9e-31  Score=221.52  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=124.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~   77 (340)
                      +..++..++.|+++|++|||.++ |+||||||+|+|++..|.+||+|||+++.++..    +..+.|++|+|||.+.|.+
T Consensus       175 ~~~evK~L~~QlL~glk~lH~~w-ilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~  253 (419)
T KOG0663|consen  175 LPGEVKTLMLQLLRGLKHLHDNW-ILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAK  253 (419)
T ss_pred             chHHHHHHHHHHHHHHHHHhhce-eEecccchhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCc
Confidence            45677889999999999999999 999999999999999999999999999987754    4457799999999998865


Q ss_pred             -CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH-------------------------hhhccccCCCCch-h
Q 019475           78 -VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL-------------------------LMDSALEGHFSND-E  130 (340)
Q Consensus        78 -~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~-~  130 (340)
                       |+.+.|+||+|||+.||+++++.|++...-..-...+..                         .....++..++.. .
T Consensus       254 tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~l  333 (419)
T KOG0663|consen  254 TYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSL  333 (419)
T ss_pred             ccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhcccccc
Confidence             899999999999999999999998875321111111111                         0111111122222 4


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          131 GTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       131 ~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ++...+|+..+|.+||.+|.|+++.++|=.
T Consensus       334 se~g~~Lln~llt~dP~kR~tA~~~L~h~~  363 (419)
T KOG0663|consen  334 SEQGFDLLNKLLTYDPGKRITAEDGLKHEY  363 (419)
T ss_pred             chhHHHHHHHHhccCccccccHHHhhcccc
Confidence            578899999999999999999999998743

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.3e-31  Score=240.58  Aligned_cols=153  Identities=18%  Similarity=0.279  Sum_probs=132.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      |+..+..+++.||+.|+.|||..+ |+||||||+|+|++..+.+||+|||++....++   .+.+|+++|.+||++.|.+
T Consensus       109 l~e~eaa~ff~QIi~gv~yCH~~~-icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~p  187 (786)
T KOG0588|consen  109 LPEREAAHFFRQILDGVSYCHAFN-ICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRP  187 (786)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhc-ceeccCCchhhhhhcccCEeeeccceeecccCCccccccCCCcccCCchhhcCCC
Confidence            466788999999999999999999 999999999999999999999999999876665   4678999999999999999


Q ss_pred             C-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC--CCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           78 V-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG--HFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        78 ~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      | +.++||||.|||+|-|++|..||.++....        ++...-++  +.|..++.++.+||.+||..||++|.|+++
T Consensus       188 YdG~~sDVWSCGVILfALLtG~LPFdDdNir~--------LLlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~e  259 (786)
T KOG0588|consen  188 YDGRPSDVWSCGVILFALLTGKLPFDDDNIRV--------LLLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEE  259 (786)
T ss_pred             CCCCccccchhHHHHHHHHhCCCCCCCccHHH--------HHHHHHcCcccCCCcCCHHHHHHHHHHhccCccccccHHH
Confidence            8 579999999999999999999997654332        22222222  356788899999999999999999999999


Q ss_pred             HHHHHHhh
Q 019475          155 LVISLMSL  162 (340)
Q Consensus       155 ~l~~l~~~  162 (340)
                      |++|.+-.
T Consensus       260 I~kHP~l~  267 (786)
T KOG0588|consen  260 ILKHPFLS  267 (786)
T ss_pred             HhhCchhh
Confidence            99996543

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.6e-31  Score=216.18  Aligned_cols=155  Identities=21%  Similarity=0.255  Sum_probs=128.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---CcccCCccCCcccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRT--   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~--   75 (340)
                      ||.++.-+|++|+.+|+.|||.++ ||||||||+|||++++-++||+|||++....++.   ..+||++|.|||.+..  
T Consensus       120 lSEK~tR~iMrqlfegVeylHa~~-IVHRDLKpENILlddn~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m  198 (411)
T KOG0599|consen  120 LSEKETRRIMRQLFEGVEYLHARN-IVHRDLKPENILLDDNMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSM  198 (411)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHhh-hhhcccChhheeeccccceEEeccceeeccCCchhHHHhcCCCcccChhheeeec
Confidence            467788899999999999999999 9999999999999999999999999999988875   4589999999998863  


Q ss_pred             ----CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh-c--cccCCCCchhHHHHHHHHHHhcccCCCC
Q 019475           76 ----GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD-S--ALEGHFSNDEGTELVRLASRCLQSEARE  148 (340)
Q Consensus        76 ----~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~li~~cl~~~p~~  148 (340)
                          ..|+...|+|++|||+|.|+.|.+||+-...-.     ..+++. .  .+..+...+.+...++||.+||+.||.+
T Consensus       199 ~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQml-----MLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~  273 (411)
T KOG0599|consen  199 YENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQML-----MLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTK  273 (411)
T ss_pred             ccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHH-----HHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchh
Confidence                357889999999999999999998886542111     111211 1  1223334567889999999999999999


Q ss_pred             CCCHHHHHHHHHh
Q 019475          149 RPNAKSLVISLMS  161 (340)
Q Consensus       149 Rps~~e~l~~l~~  161 (340)
                      |.|+.|++.|..-
T Consensus       274 Ritake~LaHpff  286 (411)
T KOG0599|consen  274 RITAKEALAHPFF  286 (411)
T ss_pred             cccHHHHhcChHH
Confidence            9999999998654

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=3.6e-31  Score=230.94  Aligned_cols=159  Identities=19%  Similarity=0.235  Sum_probs=132.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---------CCcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---------KSYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---------~~~~~~~~y~aPE   71 (340)
                      |+..+..+|+++++.||+|||.+| ||||||||+|+|++.+|+|||+|||.+.....+         ...+||+.|+|||
T Consensus       207 ls~~~Ar~ylrDvv~GLEYLH~Qg-iiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE  285 (576)
T KOG0585|consen  207 LSEQQARKYLRDVVLGLEYLHYQG-IIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPE  285 (576)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcC-eeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchH
Confidence            467789999999999999999999 999999999999999999999999999866332         2357999999999


Q ss_pred             ccccCC----CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCC
Q 019475           72 YMRTGR----VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        72 ~~~~~~----~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~  147 (340)
                      .+.++.    .+.+.||||+||++|.|+.|+.||.+...    ...+..++...+.-+..+++.+.+.+||.++|.+||+
T Consensus       286 ~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~----~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~  361 (576)
T KOG0585|consen  286 LCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFE----LELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPE  361 (576)
T ss_pred             hhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchH----HHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChh
Confidence            998743    36689999999999999999999977632    2334555555554444445788999999999999999


Q ss_pred             CCCCHHHHHHHHHhhhh
Q 019475          148 ERPNAKSLVISLMSLQK  164 (340)
Q Consensus       148 ~Rps~~e~l~~l~~~~~  164 (340)
                      +|.+..+|..|.+-...
T Consensus       362 ~Ri~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  362 QRITLPDIKLHPWVTRD  378 (576)
T ss_pred             heeehhhheecceeccC
Confidence            99999999999876554

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-31  Score=237.74  Aligned_cols=158  Identities=21%  Similarity=0.305  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCCCC
Q 019475            3 WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      ......|..+|+.|+.|||.+. |||||||.-||||..+..|||+|||.++.....   .++.||..|||||+++..+.+
T Consensus       211 p~llv~Wsk~IA~GM~YLH~hK-IIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcs  289 (904)
T KOG4721|consen  211 PSLLVDWSKGIAGGMNYLHLHK-IIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCS  289 (904)
T ss_pred             HHHHHHHHHHhhhhhHHHHHhh-HhhhccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcc
Confidence            3456789999999999999999 999999999999999999999999999876544   456899999999999999999


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      .|+||||||||+|||+||..|+..-.    ....+..+-...+....|..+++.++-||++||...|..||++.+++.||
T Consensus       290 EKVDIwSfGVVLWEmLT~EiPYkdVd----ssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~Hl  365 (904)
T KOG4721|consen  290 EKVDIWSFGVVLWEMLTGEIPYKDVD----SSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHL  365 (904)
T ss_pred             cccceehhHHHHHHHHhcCCCccccc----hheeEEeccCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence            99999999999999999998875432    12223334444556667888899999999999999999999999999999


Q ss_pred             Hhhhhh
Q 019475          160 MSLQKE  165 (340)
Q Consensus       160 ~~~~~~  165 (340)
                      ......
T Consensus       366 dIa~pe  371 (904)
T KOG4721|consen  366 DIASPE  371 (904)
T ss_pred             hhcCHH
Confidence            765544

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=5.9e-31  Score=211.78  Aligned_cols=155  Identities=18%  Similarity=0.266  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC---CCeEEecccCcccCCCCC---CcccCCccCCccccccCCC
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD---GNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~   78 (340)
                      ..-.+++||+++|.|||.++ |||||+||+|+|+...   .-+||+|||++.....+.   ...||++||+||+++..+|
T Consensus       111 ~aSH~~rQiLeal~yCH~n~-IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy  189 (355)
T KOG0033|consen  111 DASHCIQQILEALAYCHSNG-IVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPY  189 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhcC-ceeccCChhheeeeeccCCCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCC
Confidence            44568999999999999999 9999999999999643   358999999999887543   3478999999999999999


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      +..+|||+.|||+|-|+.|.+||+++....+    +.++...  .+.++..+..+++.++|+++||..||.+|+|+.|.+
T Consensus       190 ~kpvDiW~cGViLfiLL~G~~PF~~~~~~rl----ye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL  265 (355)
T KOG0033|consen  190 SKPVDIWACGVILYILLVGYPPFWDEDQHRL----YEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEAL  265 (355)
T ss_pred             CCcchhhhhhHHHHHHHhCCCCCCCccHHHH----HHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHh
Confidence            9999999999999999999999988543322    2222222  123333456788999999999999999999999999


Q ss_pred             HHHHhhhh
Q 019475          157 ISLMSLQK  164 (340)
Q Consensus       157 ~~l~~~~~  164 (340)
                      +|.+--.+
T Consensus       266 ~HpWi~~r  273 (355)
T KOG0033|consen  266 KHPWICNR  273 (355)
T ss_pred             CCchhcch
Confidence            98665433

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.9e-31  Score=226.44  Aligned_cols=153  Identities=22%  Similarity=0.274  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-CCeEEecccCcccCCCC---CCcccCCccCCccccccC-CCC
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-GNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG-RVT   79 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~-~~~   79 (340)
                      .+.-+..||.+||.|||+.| |+||||||+|+|+|.+ |.+||||||.|+....+   .++..|..|+|||.+.|. .|+
T Consensus       126 ~iKLYt~Qlfrgl~yLh~~~-IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt  204 (364)
T KOG0658|consen  126 EIKLYTYQLFRGLAYLHSHG-ICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYT  204 (364)
T ss_pred             eeHHHHHHHHHHHHHHHhcC-cccCCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccC
Confidence            34457899999999999999 9999999999999977 89999999999976554   456789999999999876 489


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHh----------------hhh-------hhhHhhhccccCCCCchhHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLI----------------RSK-------NFLLLMDSALEGHFSNDEGTELVR  136 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~----------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  136 (340)
                      .+.||||.|||+.||+.|++.|+++.....                ...       .+.++....+...+....+++..+
T Consensus       205 ~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~d  284 (364)
T KOG0658|consen  205 TSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALD  284 (364)
T ss_pred             ceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHH
Confidence            999999999999999999999988632111                000       011111111111134456789999


Q ss_pred             HHHHhcccCCCCCCCHHHHHHH
Q 019475          137 LASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       137 li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      |+.++|.++|.+|.++.|++.|
T Consensus       285 ll~~~L~Y~P~~R~~~~~~l~h  306 (364)
T KOG0658|consen  285 LLSKLLQYSPSKRLSALEALAH  306 (364)
T ss_pred             HHHHHhccChhhcCCHHHHhcc
Confidence            9999999999999999999987

>PHA02988 hypothetical protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=227.45  Aligned_cols=158  Identities=16%  Similarity=0.249  Sum_probs=129.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc--C
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT--G   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~--~   76 (340)
                      ++|.+.++++.+++.||.|||+. + ++||||||+||+++.++.+||+|||+++..... ....++..|+|||++.+  .
T Consensus       119 ~~~~~~~~i~~~i~~~l~~lH~~~~-~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  197 (283)
T PHA02988        119 LSFKTKLDMAIDCCKGLYNLYKYTN-KPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFS  197 (283)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhcCC-CCCCcCChhhEEECCCCcEEEcccchHhhhccccccccCcccccCHHHhhhccc
Confidence            46888999999999999999985 6 899999999999999999999999998864433 34567899999999976  6


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|||||||++|||++|..||.......+    ...+.........+..++..+.+|+.+||+.||++|||+.+++
T Consensus       198 ~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell  273 (283)
T PHA02988        198 EYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEI----YDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEIL  273 (283)
T ss_pred             cccchhhhhHHHHHHHHHHHCCCCCCCCCHHHH----HHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHH
Confidence            789999999999999999999998865432211    1122222223334446788999999999999999999999999


Q ss_pred             HHHHhhh
Q 019475          157 ISLMSLQ  163 (340)
Q Consensus       157 ~~l~~~~  163 (340)
                      +.|+.+.
T Consensus       274 ~~l~~~~  280 (283)
T PHA02988        274 YNLSLYK  280 (283)
T ss_pred             HHHHHHH
Confidence            9998764

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.97  E-value=2.5e-30  Score=231.99  Aligned_cols=159  Identities=21%  Similarity=0.355  Sum_probs=128.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      ++|..+.+++.||+.||+|||+++ |+||||||+|||++.++.++|+|||+++.....      ....++..|+|||++.
T Consensus       170 l~~~~~~~~~~qi~~aL~~lH~~~-ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  248 (337)
T cd05054         170 LTLEDLISYSFQVARGMEFLASRK-CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIF  248 (337)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhc
Confidence            578899999999999999999999 999999999999999999999999999865322      2234567899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||......    ..+...+........+...+.++.+++.+||+.+|++||++.
T Consensus       249 ~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~  324 (337)
T cd05054         249 DKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQID----EEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFS  324 (337)
T ss_pred             CCCCCccccHHHHHHHHHHHHHcCCCCCCCCCcc----HHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHH
Confidence            9999999999999999999998 88887542211    111122222222233445567899999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 019475          154 SLVISLMSLQK  164 (340)
Q Consensus       154 e~l~~l~~~~~  164 (340)
                      +++++|..+..
T Consensus       325 ell~~l~~~~~  335 (337)
T cd05054         325 ELVEILGDLLQ  335 (337)
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=7.2e-31  Score=222.56  Aligned_cols=156  Identities=19%  Similarity=0.291  Sum_probs=122.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc-
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR-   74 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~-   74 (340)
                      +-...--+++||+.||.|+|+.+ |+||||||+|+|++.+..+||||||+++.....      +.++.|.+|+|||++. 
T Consensus       123 ~d~H~q~f~YQiLrgLKyiHSAn-ViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~  201 (359)
T KOG0660|consen  123 TDDHAQYFLYQILRGLKYIHSAN-VIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLN  201 (359)
T ss_pred             cHHHHHHHHHHHHHhcchhhccc-ccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhc
Confidence            44566678999999999999999 999999999999999999999999999987531      3456799999999876 


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcch-------------------hHHhhhhhhhHhhhccc---cCC---CCch
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHA-------------------LDLIRSKNFLLLMDSAL---EGH---FSND  129 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~---~~~---~~~~  129 (340)
                      ...|+.+.||||+|||+.||++|++.|++..                   ...+........+....   +..   .-+.
T Consensus       202 ~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~  281 (359)
T KOG0660|consen  202 SSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPN  281 (359)
T ss_pred             cccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCC
Confidence            4569999999999999999999999998852                   11111111111211111   111   1125


Q ss_pred             hHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          130 EGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       130 ~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ..+...+|+.+||..||.+|+|++|.++|
T Consensus       282 a~p~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  282 ANPLAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             CCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            56789999999999999999999999987

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-30  Score=232.63  Aligned_cols=154  Identities=24%  Similarity=0.287  Sum_probs=126.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-CCeEEecccCcccCC----CCCCcccCCccCCccccccC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-GNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~   76 (340)
                      +..+..++++||+.|++|||++| |+||||||+|||++.+ +.+||+|||++....    ...+.+||+.|+|||++.+.
T Consensus       118 ~E~~ar~~F~Qlisav~y~H~~g-i~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~  196 (370)
T KOG0583|consen  118 KEDEARKYFRQLISAVAYCHSRG-IVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGK  196 (370)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCC-EeeCCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCC
Confidence            45678889999999999999999 9999999999999999 999999999998772    23577899999999999987


Q ss_pred             C-CC-CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchh-HHHHHHHHHHhcccCCCCCCCHH
Q 019475           77 R-VT-PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE-GTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        77 ~-~~-~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      . |+ .++||||+||++|.|++|+.||........-..    +...  .-.+|... +.++..|+.+||..+|.+|+|+.
T Consensus       197 ~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~k----i~~~--~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~  270 (370)
T KOG0583|consen  197 GTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRK----IRKG--EFKIPSYLLSPEARSLIEKMLVPDPSTRITLL  270 (370)
T ss_pred             CCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHH----HhcC--CccCCCCcCCHHHHHHHHHHcCCCcccCCCHH
Confidence            7 75 789999999999999999999977432222111    1111  12345555 88999999999999999999999


Q ss_pred             HHHHHHHhh
Q 019475          154 SLVISLMSL  162 (340)
Q Consensus       154 e~l~~l~~~  162 (340)
                      +++.|-+-.
T Consensus       271 ~i~~h~w~~  279 (370)
T KOG0583|consen  271 EILEHPWFQ  279 (370)
T ss_pred             HHhhChhhc
Confidence            999765443

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.97  E-value=2.4e-30  Score=226.64  Aligned_cols=155  Identities=24%  Similarity=0.324  Sum_probs=127.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+.+.++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||+++.....      ....+++.|+|||.+.
T Consensus       121 l~~~~~~~~~~~l~~al~~lH~~~-i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  199 (283)
T cd05048         121 LDCSDFLHIAIQIAAGMEYLSSHH-FVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAIL  199 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhc
Confidence            456788999999999999999999 999999999999999999999999998764332      2234577899999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||.......     ....+........+..++.++.+|+.+||+.+|.+||++.
T Consensus       200 ~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~  274 (283)
T cd05048         200 YGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQE-----VIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARRPRFK  274 (283)
T ss_pred             cCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHH-----HHHHHHcCCcCCCcccCCHHHHHHHHHHccCChhhCcCHH
Confidence            8899999999999999999998 888876543221     2222222223334567788999999999999999999999


Q ss_pred             HHHHHHHh
Q 019475          154 SLVISLMS  161 (340)
Q Consensus       154 e~l~~l~~  161 (340)
                      +++++|..
T Consensus       275 ~i~~~l~~  282 (283)
T cd05048         275 DIHTRLRS  282 (283)
T ss_pred             HHHHHHhc
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.97  E-value=3.5e-30  Score=229.29  Aligned_cols=160  Identities=16%  Similarity=0.250  Sum_probs=128.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC------cccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS------YSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~   74 (340)
                      +++..++.++.||+.||+|||+++ ++||||||+|||++.++.+||+|||+++.......      ..++..|++||++.
T Consensus       106 ~~~~~~~~~~~qi~~~L~~LH~~~-iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~  184 (316)
T cd05108         106 IGSQYLLNWCVQIAKGMNYLEERR-LVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESIL  184 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC-eeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhc
Confidence            467788999999999999999999 99999999999999999999999999986543321      12356799999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||.+.....     +...+........+..++.++.+++.+||..+|.+|||+.
T Consensus       185 ~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  259 (316)
T cd05108         185 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE-----ISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFR  259 (316)
T ss_pred             cCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHH-----HHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence            8899999999999999999998 887775532221     2222222222233445667899999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      +++.++..+....
T Consensus       260 ~l~~~l~~~~~~~  272 (316)
T cd05108         260 ELIIEFSKMARDP  272 (316)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999988876554

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=1.5e-30  Score=228.76  Aligned_cols=156  Identities=19%  Similarity=0.231  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++.....   ....+++.|+|||++.+..
T Consensus       107 ~~~~~~~~i~~qi~~aL~~lH~~~-iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  185 (290)
T cd07862         107 VPTETIKDMMFQLLRGLDFLHSHR-VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS  185 (290)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeCCCCHHHEEEcCCCCEEEccccceEeccCCcccccccccccccChHHHhCCC
Confidence            467889999999999999999999 999999999999999999999999998765432   2346789999999998888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh---------------cccc-------CCCCchhHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD---------------SALE-------GHFSNDEGTELV  135 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-------~~~~~~~~~~~~  135 (340)
                      ++.++|||||||++|||++|.+||........-.. +.....               ..+.       ....+..++.+.
T Consensus       186 ~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (290)
T cd07862         186 YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGK-ILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGK  264 (290)
T ss_pred             CCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHH-HHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHH
Confidence            99999999999999999999988865422111000 000000               0000       001123556789


Q ss_pred             HHHHHhcccCCCCCCCHHHHHHH
Q 019475          136 RLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       136 ~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +++.+||+.||++|||+.++++|
T Consensus       265 ~li~~~l~~~P~~R~s~~~~l~h  287 (290)
T cd07862         265 DLLLKCLTFNPAKRISAYSALSH  287 (290)
T ss_pred             HHHHHHhccCchhcCCHHHHhcC
Confidence            99999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.97  E-value=2.9e-30  Score=234.66  Aligned_cols=158  Identities=20%  Similarity=0.330  Sum_probs=127.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.++++|+.||+.||.|||+++ ++||||||+|||++.++++||+|||+++......      ...++..|+|||++.
T Consensus       209 l~~~~~~~i~~qi~~aL~yLH~~g-iiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~  287 (374)
T cd05106         209 LDLDDLLRFSSQVAQGMDFLASKN-CIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIF  287 (374)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-EEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhc
Confidence            467889999999999999999999 9999999999999999999999999987654322      123456799999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||+.....    ...............+...+.++.+++.+||+.||.+|||+.
T Consensus       288 ~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~  363 (374)
T cd05106         288 DCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVN----SKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFS  363 (374)
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCCcccccc----HHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            8899999999999999999997 99887654221    122222222233333445578899999999999999999999


Q ss_pred             HHHHHHHhhh
Q 019475          154 SLVISLMSLQ  163 (340)
Q Consensus       154 e~l~~l~~~~  163 (340)
                      ++++.|+.+.
T Consensus       364 ~l~~~l~~~~  373 (374)
T cd05106         364 QISQLIQRQL  373 (374)
T ss_pred             HHHHHHHHHh
Confidence            9999998753

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-30  Score=226.08  Aligned_cols=153  Identities=22%  Similarity=0.326  Sum_probs=119.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCcccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~   73 (340)
                      +......|++++++||.|||.+| .||||||+.||||+.+|.|||+|||.+-....+        .+.+||++|||||++
T Consensus       124 ~E~~Ia~iLre~LkaL~YLH~~G-~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl  202 (516)
T KOG0582|consen  124 EEASIATILREVLKALDYLHQNG-HIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVL  202 (516)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcC-ceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHh
Confidence            34566789999999999999999 999999999999999999999999987643322        456899999999996


Q ss_pred             cc--CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--------ccCCCCchhHHHHHHHHHHhcc
Q 019475           74 RT--GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--------LEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        74 ~~--~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      +.  ..|+.|+||||||++..||.+|..||.....-    ..+...+...        ...+.....+..+.++|..||+
T Consensus       203 ~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPm----kvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~  278 (516)
T KOG0582|consen  203 MQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPM----KVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLV  278 (516)
T ss_pred             hhcccCccchhhhhhhhHHHHHHhcCCCCcccCChH----HHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhh
Confidence            53  46999999999999999999999988543111    1111111111        1111122355689999999999


Q ss_pred             cCCCCCCCHHHHHHHH
Q 019475          144 SEARERPNAKSLVISL  159 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l  159 (340)
                      .||.+|||+++++.|-
T Consensus       279 kDP~kRptAskLlkh~  294 (516)
T KOG0582|consen  279 KDPSKRPTASKLLKHA  294 (516)
T ss_pred             cCcccCCCHHHHhccH
Confidence            9999999999999873

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.97  E-value=1.9e-30  Score=227.65  Aligned_cols=156  Identities=17%  Similarity=0.250  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.|++.||.|||+++ ++||||||+|||++.++.++|+|||++......   ....|+..|+|||++.+..
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lH~~~-iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~  177 (285)
T cd05631          99 FDEQRAIFYAAELCCGLEDLQRER-IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEK  177 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCC
Confidence            467788999999999999999999 999999999999999999999999998865433   2346899999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----H
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----A  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~  152 (340)
                      ++.++|||||||++|+|++|+.||.......... .....+. ......+...+..+.+|+.+||..||.+||+     +
T Consensus       178 ~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~-~~~~~~~-~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~  255 (285)
T cd05631         178 YTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKRE-EVDRRVK-EDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGA  255 (285)
T ss_pred             CCcccCchhHHHHHHHHHhCCCCCCCCCcchhHH-HHHHHhh-cccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCH
Confidence            9999999999999999999999886542211111 1111111 1122345566788999999999999999997     8


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      +++++|.
T Consensus       256 ~~~~~h~  262 (285)
T cd05631         256 AGVKQHP  262 (285)
T ss_pred             HHHhcCH
Confidence            9998874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.97  E-value=3.3e-30  Score=218.96  Aligned_cols=154  Identities=19%  Similarity=0.263  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC-C---CCCcccCCccCCccccccC-CC
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR-D---GKSYSTNLAFTPPEYMRTG-RV   78 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~-~---~~~~~~~~~y~aPE~~~~~-~~   78 (340)
                      .....++.||+.||+|||+++ |+||||||+||||+.+|.+||+|||+++... +   ..+.++|.+|+|||++.|. .|
T Consensus       120 ~~ik~~m~Qll~gl~~~H~~~-IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Y  198 (323)
T KOG0594|consen  120 RLIKSFMRQLLRGLAFLHSHG-ILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSY  198 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-eecccCCcceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcC
Confidence            467889999999999999999 9999999999999999999999999998655 2   2455789999999999987 68


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc----------------cccCCC-Cch-------hHHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS----------------ALEGHF-SND-------EGTEL  134 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~-------~~~~~  134 (340)
                      +...||||+|||+.||+++++.|++......-...+..+-.+                .+.... +..       ...+.
T Consensus       199 s~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~  278 (323)
T KOG0594|consen  199 STSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDG  278 (323)
T ss_pred             CCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccH
Confidence            999999999999999999999998763211111111111000                000000 111       12478


Q ss_pred             HHHHHHhcccCCCCCCCHHHHHHH
Q 019475          135 VRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       135 ~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+++.+||+++|.+|.|+..++.|
T Consensus       279 ~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  279 IELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             HHHHHHHhccCcccCcCHHHHhcC
Confidence            999999999999999999999987

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-30  Score=209.25  Aligned_cols=159  Identities=19%  Similarity=0.249  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEcCCCCeEEecccCcccCCCC-------------CCcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------------KSYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------------~~~~~~~~   66 (340)
                      +|..+.+.|+.+|++||++||+.. ++.||||||.|||+++++.+++.|||.+....-.             .....|..
T Consensus       124 ~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~p  203 (302)
T KOG2345|consen  124 VSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIP  203 (302)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCc
Confidence            467789999999999999999996 5999999999999999999999999998764311             22356899


Q ss_pred             cCCccccc---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh-hccccCCCCchhHHHHHHHHHHhc
Q 019475           67 FTPPEYMR---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM-DSALEGHFSNDEGTELVRLASRCL  142 (340)
Q Consensus        67 y~aPE~~~---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~cl  142 (340)
                      |+|||.+.   +...+.++|||||||++|.|+.|..||.....   ....+.-.+ ...+.-+.....++.+.++|..||
T Consensus       204 yRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~---~GgSlaLAv~n~q~s~P~~~~yse~l~~lik~ml  280 (302)
T KOG2345|consen  204 YRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQ---QGGSLALAVQNAQISIPNSSRYSEALHQLIKSML  280 (302)
T ss_pred             ccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhh---cCCeEEEeeeccccccCCCCCccHHHHHHHHHHh
Confidence            99999986   44578899999999999999999998854311   222211111 112222223457899999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhh
Q 019475          143 QSEARERPNAKSLVISLMSL  162 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~  162 (340)
                      +.||.+||++.+++.++..+
T Consensus       281 qvdP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  281 QVDPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             cCCcccCCCHHHHHHHHHhh
Confidence            99999999999999988765

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=8.7e-31  Score=226.75  Aligned_cols=147  Identities=19%  Similarity=0.350  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccCCCCCc
Q 019475            6 RLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTGRVTPE   81 (340)
Q Consensus         6 ~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~   81 (340)
                      ..-|+++++.|+.|||.++ .+|||||+.|||+..+|.+||+|||++-.....    .+.+||+.|||||++.+..|+.+
T Consensus       113 i~~ilre~l~~l~ylH~~~-kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~K  191 (467)
T KOG0201|consen  113 IAVILREVLKGLDYLHSEK-KIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTK  191 (467)
T ss_pred             eeeehHHHHHHhhhhhhcc-eecccccccceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhccccccch
Confidence            3457899999999999999 999999999999999999999999998765543    57799999999999998899999


Q ss_pred             cchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           82 SVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        82 ~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +||||||++.+||.+|.+|+.....     ....-++.....+......++.+++||..||+++|+.|||+.++++|
T Consensus       192 ADIWSLGITaiEla~GePP~s~~hP-----mrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  192 ADIWSLGITAIELAKGEPPHSKLHP-----MRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             hhhhhhhHHHHHHhcCCCCCcccCc-----ceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence            9999999999999999988754311     22222233333333333567889999999999999999999999987

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-30  Score=233.31  Aligned_cols=159  Identities=23%  Similarity=0.371  Sum_probs=126.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |...+.+.|++||+.|+.|||.++ |||||||..||++.++++|||+|||++......      ....|...|||||+++
T Consensus       485 fdm~~~idIAqQiaqGM~YLHAK~-IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIR  563 (678)
T KOG0193|consen  485 FDMNTTIDIAQQIAQGMDYLHAKN-IIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIR  563 (678)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhh-hhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHh
Confidence            346788999999999999999999 999999999999999999999999998643221      2345678999999997


Q ss_pred             c---CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-ccC---CCCchhHHHHHHHHHHhcccCCC
Q 019475           75 T---GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-LEG---HFSNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        75 ~---~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~li~~cl~~~p~  147 (340)
                      .   .+|++.+||||||||+|||++|..|+.....+.+    + -++..+ +..   .....+++++++|+..||.++++
T Consensus       564 mqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqI----i-fmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~  638 (678)
T KOG0193|consen  564 MQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQI----I-FMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDRE  638 (678)
T ss_pred             hcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhhe----E-EEecccccCccchhhhccCHHHHHHHHHHHHhcCcc
Confidence            4   3689999999999999999999988864322221    1 111111 111   12346778999999999999999


Q ss_pred             CCCCHHHHHHHHHhhhhh
Q 019475          148 ERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       148 ~Rps~~e~l~~l~~~~~~  165 (340)
                      +||.+.+|+..|+.+...
T Consensus       639 eRP~F~~il~~l~~l~~~  656 (678)
T KOG0193|consen  639 ERPLFPQLLSKLEELLPS  656 (678)
T ss_pred             cCccHHHHHHHHHHhhhc
Confidence            999999999988877663

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-30  Score=211.62  Aligned_cols=150  Identities=22%  Similarity=0.336  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccccc---CCCCCc
Q 019475            8 RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT---GRVTPE   81 (340)
Q Consensus         8 ~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~---~~~~~~   81 (340)
                      ++...++.||.||.++.+|||||+||+|||+|..|++|+||||++.....+   +...|.+.||+||.+.-   .+|+.+
T Consensus       195 k~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYDiR  274 (391)
T KOG0983|consen  195 KMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIR  274 (391)
T ss_pred             hhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeecccccccccCCccccCccccCCCCCCccchh
Confidence            567788999999998877999999999999999999999999998876554   34467889999999863   468899


Q ss_pred             cchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475           82 SVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus        82 ~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +||||||++++||.||+.||.+...+......+..-..+.+..  ....++.+.+|+..||..|+.+||...++++|-
T Consensus       275 aDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~--~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h~  350 (391)
T KOG0983|consen  275 ADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPG--HMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEHP  350 (391)
T ss_pred             hhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCc--ccCcCHHHHHHHHHHhhcCcccCcchHHHhcCc
Confidence            9999999999999999999887544433222222211122211  223688999999999999999999999999874

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.97  E-value=9.8e-30  Score=223.77  Aligned_cols=159  Identities=21%  Similarity=0.259  Sum_probs=128.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      ++|..++.++.||+.||+|||+++ ++||||||+||+++.++.++|+|||++......      ....++..|+|||.+.
T Consensus       120 ~~~~~~~~i~~~i~~al~~lH~~~-i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  198 (291)
T cd05094         120 LGLSQMLHIASQIASGMVYLASQH-FVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM  198 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhc
Confidence            467889999999999999999999 999999999999999999999999998754332      2234567899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||.......     ....+........+...+..+.+++.+||..+|++|||+.
T Consensus       199 ~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~  273 (291)
T cd05094         199 YRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTE-----VIECITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIK  273 (291)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHhCCCCCCCCccCCHHHHHHHHHHcccChhhCcCHH
Confidence            8889999999999999999999 888765532221     1111222222223445677899999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ++++.|..+.+.
T Consensus       274 ~v~~~l~~~~~~  285 (291)
T cd05094         274 EIYKILHALGKA  285 (291)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.97  E-value=3.7e-30  Score=228.92  Aligned_cols=151  Identities=21%  Similarity=0.281  Sum_probs=130.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      |+.+.+..|+.+++.||.|||+++ |+|||+||.|||++..|++|+||||+++-....+    +..||+.|||||+..+.
T Consensus        97 lpEe~v~~~a~~LVsaL~yLhs~r-ilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~  175 (808)
T KOG0597|consen   97 LPEEQVRAIAYDLVSALYYLHSNR-ILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQ  175 (808)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC-cccccCCcceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCC
Confidence            577889999999999999999999 9999999999999999999999999999776653    34689999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc--CCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE--GHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      +|+..+|+||+|||+||+++|++||......        +++.....  ..+|...+..+..|+...|.+||.+|.|-.+
T Consensus       176 pyd~~sDlWslGcilYE~~~G~PPF~a~si~--------~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~  247 (808)
T KOG0597|consen  176 PYDHTSDLWSLGCILYELYVGQPPFYARSIT--------QLVKSILKDPVKPPSTASSSFVNFLQGLLIKDPAQRLTWTD  247 (808)
T ss_pred             CccchhhHHHHHHHHHHHhcCCCCchHHHHH--------HHHHHHhcCCCCCcccccHHHHHHHHHHhhcChhhcccHHH
Confidence            9999999999999999999999998764322        22222221  2345678899999999999999999999999


Q ss_pred             HHHHHH
Q 019475          155 LVISLM  160 (340)
Q Consensus       155 ~l~~l~  160 (340)
                      ++.|-.
T Consensus       248 Ll~HpF  253 (808)
T KOG0597|consen  248 LLGHPF  253 (808)
T ss_pred             HhcChH
Confidence            998853

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=1.8e-30  Score=231.72  Aligned_cols=152  Identities=19%  Similarity=0.308  Sum_probs=124.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||+|||++| |+||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+.
T Consensus        92 ~~~~~~~~~~~qi~~~L~~lH~~~-ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  170 (323)
T cd05571          92 FSEDRARFYGAEIVSALGYLHSCD-VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDN  170 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCC
Confidence            467788899999999999999999 99999999999999999999999999875322    1334689999999999998


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----C
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----N  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s  151 (340)
                      .++.++|||||||++|||++|..||..........    .+...  ...++...+.++.+||.+||..||++||     +
T Consensus       171 ~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~----~~~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~  244 (323)
T cd05571         171 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFE----LILME--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPED  244 (323)
T ss_pred             CCCccccCcccchhhhhhhcCCCCCCCCCHHHHHH----HHHcC--CCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCC
Confidence            99999999999999999999999886643222111    11111  1234556778899999999999999999     8


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|-
T Consensus       245 ~~~ll~h~  252 (323)
T cd05571         245 AKEIMEHR  252 (323)
T ss_pred             HHHHHcCC
Confidence            99998773

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.96  E-value=1.3e-29  Score=219.69  Aligned_cols=156  Identities=19%  Similarity=0.304  Sum_probs=127.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-----cccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-----YSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~   75 (340)
                      +++..++.++.|++.||.|||+++ ++||||||+||+++.++.+||+|||++........     ...+..|++||.+.+
T Consensus       101 l~~~~~~~~~~ql~~~l~~lH~~~-i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  179 (263)
T cd05052         101 VNAVVLLYMATQISSAMEYLEKKN-FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY  179 (263)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhcc
Confidence            467888999999999999999999 99999999999999999999999999876543321     123567999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||++ |..||+......     ....+........+...+..+.+++.+||..+|++|||+.+
T Consensus       180 ~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~  254 (263)
T cd05052         180 NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ-----VYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAE  254 (263)
T ss_pred             CCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH-----HHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHH
Confidence            899999999999999999998 888876543221     12222223334455667789999999999999999999999


Q ss_pred             HHHHHHhh
Q 019475          155 LVISLMSL  162 (340)
Q Consensus       155 ~l~~l~~~  162 (340)
                      +++.|+.+
T Consensus       255 l~~~l~~~  262 (263)
T cd05052         255 IHQAFETM  262 (263)
T ss_pred             HHHHHHhh
Confidence            99998764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.96  E-value=7.7e-30  Score=224.73  Aligned_cols=154  Identities=13%  Similarity=0.114  Sum_probs=121.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----------CCcccCCccCCc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----------KSYSTNLAFTPP   70 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aP   70 (340)
                      ++..+..|+.|++.||.|||+++ ++||||||+|||++.++.++|+|||+++.....           ....||+.|+||
T Consensus       124 ~~~~~~~i~~qi~~~l~~lH~~~-iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ap  202 (294)
T PHA02882        124 NKKLIKNIMKDMLTTLEYIHEHG-ISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGL  202 (294)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCH
Confidence            45667889999999999999999 999999999999999999999999998754311           223689999999


Q ss_pred             cccccCCCCCccchhhHHHHHHHHHhCCCCCCcchh-HHhhh---hhh-hHhhhccccCCCCchhHHHHHHHHHHhcccC
Q 019475           71 EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHAL-DLIRS---KNF-LLLMDSALEGHFSNDEGTELVRLASRCLQSE  145 (340)
Q Consensus        71 E~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  145 (340)
                      |++.+..++.++|||||||++|||++|+.||..... .....   ..+ ..+.....   .....++.+.+++..||..+
T Consensus       203 e~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  279 (294)
T PHA02882        203 DAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKI---KIKNANKFIYDFIECVTKLS  279 (294)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhh---ccCCCCHHHHHHHHHHHhCC
Confidence            999999999999999999999999999988865421 11100   111 11111111   12344678999999999999


Q ss_pred             CCCCCCHHHHHHHH
Q 019475          146 ARERPNAKSLVISL  159 (340)
Q Consensus       146 p~~Rps~~e~l~~l  159 (340)
                      |++||+++++++.+
T Consensus       280 ~~~rp~~~~l~~~~  293 (294)
T PHA02882        280 YEEKPDYDALIKIF  293 (294)
T ss_pred             CCCCCCHHHHHHhh
Confidence            99999999998765

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.96  E-value=1.7e-29  Score=220.92  Aligned_cols=159  Identities=17%  Similarity=0.229  Sum_probs=127.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      ++|..++.|+.||+.||.|||+++ ++||||||+||+++.++.+||+|||.++.....      ....++..|++||.+.
T Consensus       106 ~~~~~~~~i~~qi~~~l~~lH~~~-iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~  184 (279)
T cd05111         106 LDPQRLLNWCVQIAKGMYYLEEHR-MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESIL  184 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhc
Confidence            478889999999999999999999 999999999999999999999999999765332      1234567899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++.++|||||||++||+++ |..||.+.....     ....+........+..++..+.+++.+||..+|++|||+.
T Consensus       185 ~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~  259 (279)
T cd05111         185 FGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHE-----VPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFK  259 (279)
T ss_pred             cCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH-----HHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHH
Confidence            8899999999999999999998 887776542221     1222222222223334566789999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ++++.|..+...
T Consensus       260 el~~~l~~~~~~  271 (279)
T cd05111         260 ELANEFTRMARD  271 (279)
T ss_pred             HHHHHHHHHHhC
Confidence            999998886654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=5e-30  Score=225.51  Aligned_cols=156  Identities=23%  Similarity=0.319  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      |+..++..++.||+.||.|||++| |+|||||.+||||+.+|.+||+|||+++.+...     +..+.|++|+|||.+.|
T Consensus       215 ft~~qIKc~mkQLl~Gl~~cH~~g-vlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG  293 (560)
T KOG0600|consen  215 FTEPQIKCYMKQLLEGLEYCHSRG-VLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLG  293 (560)
T ss_pred             cChHHHHHHHHHHHHHHHHHhhcC-eeeccccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcC
Confidence            467789999999999999999999 999999999999999999999999999976654     34467999999999987


Q ss_pred             C-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh---------------ccccCC---------CCchh
Q 019475           76 G-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD---------------SALEGH---------FSNDE  130 (340)
Q Consensus        76 ~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~---------~~~~~  130 (340)
                      . .|+.+.|+||.|||+.||++|++++++...-. +...+.++.-               ..+...         .....
T Consensus       294 ~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEve-Ql~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~  372 (560)
T KOG0600|consen  294 ATSYGTAVDLWSVGCILAELFLGKPILQGRTEVE-QLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDF  372 (560)
T ss_pred             CcccccceeehhhhHHHHHHHcCCCCcCCccHHH-HHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccC
Confidence            5 59999999999999999999999887752111 0001111100               000000         01234


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          131 GTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       131 ~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +....+|+..+|..||.+|.|+.+++++
T Consensus       373 ~~~~l~Ll~~lL~ldP~kR~tA~~aL~s  400 (560)
T KOG0600|consen  373 PASALDLLEKLLSLDPDKRGTASSALQS  400 (560)
T ss_pred             CHHHHHHHHHHhccCccccccHHHHhcC
Confidence            5678899999999999999999999865

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.96  E-value=1.3e-29  Score=220.66  Aligned_cols=156  Identities=22%  Similarity=0.274  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+.+.++.||+.||.|||+++ |+||||||+|||++.++.++|+|||+++......      ...+++.|++||.+.
T Consensus       109 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  187 (272)
T cd05075         109 LPTQMLVKFMTDIASGMEYLSSKS-FIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLA  187 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHcc
Confidence            467889999999999999999999 9999999999999999999999999988654321      223466899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |+.||.......     ....+........+...+..+.+++.+||+.+|.+|||+.
T Consensus       188 ~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  262 (272)
T cd05075         188 DRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSE-----IYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFE  262 (272)
T ss_pred             CCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHH-----HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHH
Confidence            8889999999999999999999 777775532211     1111111112223445677899999999999999999999


Q ss_pred             HHHHHHHhh
Q 019475          154 SLVISLMSL  162 (340)
Q Consensus       154 e~l~~l~~~  162 (340)
                      ++++.|..+
T Consensus       263 ~l~~~l~~~  271 (272)
T cd05075         263 TLRCELEKA  271 (272)
T ss_pred             HHHHHHHhh
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.96  E-value=1.3e-29  Score=230.62  Aligned_cols=157  Identities=21%  Similarity=0.354  Sum_probs=125.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      |+|..+++++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++......      ...++..|+|||++.
T Consensus       211 l~~~~~~~~~~qi~~~l~~lH~~~-ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  289 (375)
T cd05104         211 LDTEDLLSFSYQVAKGMSFLASKN-CIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIF  289 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhc
Confidence            578899999999999999999999 9999999999999999999999999987654322      123356799999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||......    ......+........+...+.++.+|+.+||+.||++|||+.
T Consensus       290 ~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~  365 (375)
T cd05104         290 NCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVD----SKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFK  365 (375)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCch----HHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCcCHH
Confidence            9999999999999999999998 77776543211    112222222222233444567899999999999999999999


Q ss_pred             HHHHHHHhh
Q 019475          154 SLVISLMSL  162 (340)
Q Consensus       154 e~l~~l~~~  162 (340)
                      ++++.|+..
T Consensus       366 eil~~l~~~  374 (375)
T cd05104         366 QIVQLIEQQ  374 (375)
T ss_pred             HHHHHHHhh
Confidence            999998753

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.96  E-value=7.8e-29  Score=239.92  Aligned_cols=331  Identities=17%  Similarity=0.127  Sum_probs=204.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----------------------CC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----------------------GK   59 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----------------------~~   59 (340)
                      ++..+++++.||+.||+|||++| |+||||||+||+++.++.++|+|||+++....                      ..
T Consensus       111 sv~~iL~I~~QIa~AL~yLHs~G-IIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g  189 (932)
T PRK13184        111 SVGAFLSIFHKICATIEYVHSKG-VLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPG  189 (932)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-ccccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCC
Confidence            45677899999999999999999 99999999999999999999999999875511                      01


Q ss_pred             CcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHH
Q 019475           60 SYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLAS  139 (340)
Q Consensus        60 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  139 (340)
                      ...||+.|+|||++.+..++.++|||||||++|||++|..||...........   ...............++.+.+++.
T Consensus       190 ~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~---~~i~~P~~~~p~~~iP~~L~~LI~  266 (932)
T PRK13184        190 KIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYR---DVILSPIEVAPYREIPPFLSQIAM  266 (932)
T ss_pred             CCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhh---hhccChhhccccccCCHHHHHHHH
Confidence            23589999999999999999999999999999999999988865322111110   111000000111245677999999


Q ss_pred             HhcccCCCCCC-CHHHHHHHHHhhhhhccC--Cchhhc--------------cCCCCCCCCCCCC---------------
Q 019475          140 RCLQSEARERP-NAKSLVISLMSLQKEAEV--PSYVLL--------------GIQHETAPSTKPL---------------  187 (340)
Q Consensus       140 ~cl~~~p~~Rp-s~~e~l~~l~~~~~~~~~--~~~~~~--------------~~~~~~~~~~~~~---------------  187 (340)
                      +||..||++|| +++++++.|+........  +.....              ..........+|.               
T Consensus       267 rcL~~DP~kR~ss~eeLl~~Le~~lq~~p~w~~~~~l~~~~~~~wk~~e~iLlsk~~~~l~~s~~~w~s~~is~ie~~~~  346 (932)
T PRK13184        267 KALAVDPAERYSSVQELKQDLEPHLQGSPEWTVKATLMTKKKSCWKFYEPILLSKYFPMLESSPAQWYSLMISKIESSSE  346 (932)
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHHhcCcccccccccccccchhccccchhhhhhhcccccCCchhheeccccccccccc
Confidence            99999999996 567777777665332110  000000              0000000000000               


Q ss_pred             ------------------CCCcccccccccch--------------------hhHHHHHhh-------------cCcccc
Q 019475          188 ------------------SLTPLGEACSRLDL--------------------TAIHEILEG-------------MGYKDD  216 (340)
Q Consensus       188 ------------------~~~p~~~~~~~~~~--------------------~~~~~~~~~-------------~~~~~~  216 (340)
                                        .++|... ....+.                    ....+....             .-.+..
T Consensus       347 ~rie~~~~~~~~~~~~g~~l~p~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  425 (932)
T PRK13184        347 TRLEYTVTKKGLHEGFGILLPPSEE-AERGDFYCGYGLWLHIKNNELSVSLVKNGLEIQKKSQEIISQQETFAIAIEKSN  425 (932)
T ss_pred             eeeeeeeccCccccccceecCcccc-cccCccccccceeeecccccceeeeecccceeecCCcccccccceeeEEEEEec
Confidence                              0000000 000000                    000000000             000000


Q ss_pred             chhhchhhhhhhh-----------------HHHHHH--------------HhHHHhHhHHhhcCCHHHHHHHHHhhhcCC
Q 019475          217 EGIANELSFQMWT-----------------SQMQET--------------LNSKKHGDTAFRAKDFSTAIDCYTQFIDGG  265 (340)
Q Consensus       217 ~~~~~~~~~~~~~-----------------~~~~~~--------------~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~  265 (340)
                      ...........|.                 ++....              .....-.++....+.|++|+..|++.-.--
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (932)
T PRK13184        426 HRISLFVDQTLWIIHIDYLPSRGGRIGIIIQDLQDIMSNIAIFESSGALRVSCLAVPDAFLAEKLYDQALIFYRRIRESF  505 (932)
T ss_pred             chhhhhcccceEEEeeeccccCCceEEEEEecchhhccceEEEEecCceeeecccCcHHHHhhHHHHHHHHHHHHHhhcC
Confidence            0000000000110                 000000              022333456677788999999999998887


Q ss_pred             CC--CChhHhhhhhHHHHhc----C---ChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          266 TM--VSPTVYARRCLSYLMN----D---MPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       266 p~--~~~~~~~~~~~~~~~~----~---~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      |.  .-.++.+..|.+.+.+    |   .+++|+..|++. .-.|.-+--|..+|.+|..+|+|+|-+++|..|++.-|+
T Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (932)
T PRK13184        506 PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQ  584 (932)
T ss_pred             CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            76  1356788889888774    2   477777777763 345677888999999999999999999999999998776


Q ss_pred             cc
Q 019475          337 KN  338 (340)
Q Consensus       337 ~~  338 (340)
                      .+
T Consensus       585 ~~  586 (932)
T PRK13184        585 HP  586 (932)
T ss_pred             CC
Confidence            43

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.96  E-value=1.1e-29  Score=222.63  Aligned_cols=155  Identities=18%  Similarity=0.258  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++..++.++.|++.||.|||+++ ++||||||+||+++.++.+||+|||+++.....      ....+++.|+|||.+.
T Consensus       121 ~~~~~~~~~~~ql~~aL~~lH~~g-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  199 (283)
T cd05091         121 LEPADFVHIVTQIAAGMEFLSSHH-VVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIM  199 (283)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcC-ccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHh
Confidence            356778899999999999999999 999999999999999999999999998754332      1234467899999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++.++|||||||++|||++ |..||......     .....+........+..++..+.+|+.+||+.+|.+||++.
T Consensus       200 ~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~  274 (283)
T cd05091         200 YGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ-----DVIEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFK  274 (283)
T ss_pred             cCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHH-----HHHHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHH
Confidence            8889999999999999999998 66666543221     12222222222334566788899999999999999999999


Q ss_pred             HHHHHHHh
Q 019475          154 SLVISLMS  161 (340)
Q Consensus       154 e~l~~l~~  161 (340)
                      +++..|+.
T Consensus       275 ~i~~~l~~  282 (283)
T cd05091         275 DIHSRLRT  282 (283)
T ss_pred             HHHHHhhC
Confidence            99998753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.96  E-value=1.9e-29  Score=225.89  Aligned_cols=162  Identities=17%  Similarity=0.282  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~   78 (340)
                      +++..+..++.|++.||.|||++++|+||||||+|||++.++.+||+|||++......  ....++..|+|||++.+..+
T Consensus       100 ~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~  179 (331)
T cd06649         100 IPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY  179 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccccccccCCCCcCcCCHhHhcCCCC
Confidence            3567788999999999999998644999999999999999999999999998765432  34568999999999998899


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh--------------------------------------hhH----
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN--------------------------------------FLL----  116 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~--------------------------------------~~~----  116 (340)
                      +.++|||||||++|||++|+.||............                                      ...    
T Consensus       180 ~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (331)
T cd06649         180 SVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDY  259 (331)
T ss_pred             CchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccccccccccccchhHHHHHHH
Confidence            99999999999999999999988643221111000                                      000    


Q ss_pred             hhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 019475          117 LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSL  162 (340)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~  162 (340)
                      +.............+.++.+||.+||..||++|||+.++++|.+-.
T Consensus       260 ~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~  305 (331)
T cd06649         260 IVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIK  305 (331)
T ss_pred             HHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHh
Confidence            0000000111123567899999999999999999999999987543

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.96  E-value=3.7e-30  Score=238.45  Aligned_cols=159  Identities=22%  Similarity=0.280  Sum_probs=121.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCC---CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.++ .+||+|||+++.....   ....+|+.|+|||++.+.
T Consensus       167 l~~~~~~~~~~qi~~gL~yLH~~~-IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~  245 (440)
T PTZ00036        167 LPLFLVKLYSYQLCRALAYIHSKF-ICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGA  245 (440)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EecCCcCHHHEEEcCCCCceeeeccccchhccCCCCcccCCCCcCccCHHHhcCC
Confidence            456778899999999999999999 99999999999999665 6999999999865432   345678999999998764


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHh----------hh-------------ccccCCCCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL----------MD-------------SALEGHFSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~~~~~~~  132 (340)
                       .++.++|||||||++|||++|.+||.+......-.......          ..             ..+...++...+.
T Consensus       246 ~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~  325 (440)
T PTZ00036        246 TNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPD  325 (440)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCH
Confidence             68999999999999999999999887643211100000000          00             0011112334567


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ++.+||.+||..||.+|||+.++++|.+
T Consensus       326 ~~~~li~~~L~~dP~~R~ta~e~l~hp~  353 (440)
T PTZ00036        326 DAINFISQFLKYEPLKRLNPIEALADPF  353 (440)
T ss_pred             HHHHHHHHHCCCChhHCcCHHHHhCChh
Confidence            8999999999999999999999998854

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.96  E-value=1.8e-29  Score=220.66  Aligned_cols=159  Identities=16%  Similarity=0.229  Sum_probs=126.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC------cccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS------YSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++.......      ..++..|++||.+.
T Consensus       106 ~~~~~~~~~~~qi~~~L~~lH~~~-iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (279)
T cd05109         106 IGSQDLLNWCVQIAKGMSYLEEVR-LVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESIL  184 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhc
Confidence            467889999999999999999999 99999999999999999999999999886543221      12356799999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||......     .....+........+...+.++.+++.+||..||+.||++.
T Consensus       185 ~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~  259 (279)
T cd05109         185 HRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAR-----EIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFR  259 (279)
T ss_pred             cCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH-----HHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHH
Confidence            8889999999999999999998 77776443221     11222222222233445677899999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      +++..|..+...
T Consensus       260 ~l~~~l~~~~~~  271 (279)
T cd05109         260 ELVDEFSRMARD  271 (279)
T ss_pred             HHHHHHHHhhcC
Confidence            999988776544

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.96  E-value=2e-29  Score=217.82  Aligned_cols=155  Identities=18%  Similarity=0.249  Sum_probs=126.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-------cccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-------YSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~   73 (340)
                      +++..++.++.|++.||.|||+++ ++||||||.||+++.++.+||+|||++........       ..++..|+|||.+
T Consensus        92 ~~~~~~~~i~~qi~~al~~lH~~~-i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05116          92 VTEKNITELVHQVSMGMKYLEETN-FVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECM  170 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHh
Confidence            467889999999999999999999 99999999999999999999999999876543321       1235689999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|||++ |..||......     .....+........+...+.++.++|.+||+.+|++||++
T Consensus       171 ~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~  245 (257)
T cd05116         171 NYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN-----EVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGF  245 (257)
T ss_pred             ccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCH
Confidence            88889999999999999999998 88877653221     2222333333334556678899999999999999999999


Q ss_pred             HHHHHHHHh
Q 019475          153 KSLVISLMS  161 (340)
Q Consensus       153 ~e~l~~l~~  161 (340)
                      ++|.+.|..
T Consensus       246 ~~i~~~l~~  254 (257)
T cd05116         246 AVVELRLRN  254 (257)
T ss_pred             HHHHHHHhc
Confidence            999998864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.96  E-value=9e-30  Score=238.69  Aligned_cols=153  Identities=17%  Similarity=0.252  Sum_probs=125.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++..+..++.|++.||.|||+++ |+||||||+|||++.++.+||+|||+++.....      ....||+.|+|||++.
T Consensus       140 l~e~~~~~i~~qll~aL~~lH~~~-IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~  218 (496)
T PTZ00283        140 FREHEAGLLFIQVLLAVHHVHSKH-MIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWR  218 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhC
Confidence            355678889999999999999999 999999999999999999999999998764422      3456899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      +..++.++|||||||++|||++|+.||........-    .... .......+...++++.+++.+||..+|.+||++.+
T Consensus       219 ~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~----~~~~-~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~e  293 (496)
T PTZ00283        219 RKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVM----HKTL-AGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSK  293 (496)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH----HHHh-cCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHH
Confidence            989999999999999999999999998764332211    1111 11122345567788999999999999999999999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      ++.+.
T Consensus       294 ll~~p  298 (496)
T PTZ00283        294 LLNMP  298 (496)
T ss_pred             HHhCH
Confidence            99874

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.96  E-value=2.6e-29  Score=221.69  Aligned_cols=160  Identities=19%  Similarity=0.251  Sum_probs=127.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.||+.||+|||+++ ++||||||+|||++.++.+||+|||++......   .....+..|++||++.+..
T Consensus       116 l~~~~~~~i~~qi~~al~~lH~~~-ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  194 (297)
T cd05089         116 LTSQQLLQFASDVATGMQYLSEKQ-FIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSV  194 (297)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCcCCcceEEECCCCeEEECCcCCCccccceeccCCCCcCccccCchhhccCC
Confidence            356788999999999999999999 999999999999999999999999998643321   1122345799999998888


Q ss_pred             CCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      ++.++|||||||++|||++ |..||........     ...+........+..++..+.+|+.+||..+|.+|||+++++
T Consensus       195 ~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~  269 (297)
T cd05089         195 YTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAEL-----YEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQIS  269 (297)
T ss_pred             CCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHH-----HHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence            9999999999999999997 8888765432211     112222222233455678899999999999999999999999


Q ss_pred             HHHHhhhhhc
Q 019475          157 ISLMSLQKEA  166 (340)
Q Consensus       157 ~~l~~~~~~~  166 (340)
                      +.|..+....
T Consensus       270 ~~l~~~~~~~  279 (297)
T cd05089         270 VQLSRMLEAR  279 (297)
T ss_pred             HHHHHHHHhh
Confidence            9998877654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.96  E-value=1.9e-29  Score=217.71  Aligned_cols=155  Identities=23%  Similarity=0.358  Sum_probs=125.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++..++.++.||+.||+|||+++ ++||||||+||+++.++.+||+|||+++..... ....++..|+|||++.+..++
T Consensus        99 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  177 (256)
T cd05082          99 LGGDCLLKFSLDVCEAMEYLEANN-FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFS  177 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeccccchheEEEcCCCcEEecCCccceeccccCCCCccceeecCHHHHccCCCC
Confidence            467888999999999999999999 999999999999999999999999998765433 223445689999999888899


Q ss_pred             CccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .++|||||||++|+|++ |+.||........     ...+........+..++..+.+++.+||..+|++|||+.++++.
T Consensus       178 ~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~  252 (256)
T cd05082         178 TKSDVWSFGILLWEIYSFGRVPYPRIPLKDV-----VPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQ  252 (256)
T ss_pred             chhhhHHHHHHHHHHHhCCCCCCCCCCHHHH-----HHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence            99999999999999997 8877755322211     11122222333455667889999999999999999999999998


Q ss_pred             HHh
Q 019475          159 LMS  161 (340)
Q Consensus       159 l~~  161 (340)
                      |..
T Consensus       253 l~~  255 (256)
T cd05082         253 LEH  255 (256)
T ss_pred             Hhc
Confidence            865

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-29  Score=217.79  Aligned_cols=155  Identities=17%  Similarity=0.247  Sum_probs=124.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC------CCeEEecccCcccCCCC---CCcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD------GNPRLSSFGLMKNSRDG---KSYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~------~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE   71 (340)
                      |+..+...++.||+.||++||+++ ||||||||+|||++..      -.+||+|||+++...++   .+.+|++.|||||
T Consensus       106 l~e~t~r~Fm~QLA~alq~L~~~~-IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPE  184 (429)
T KOG0595|consen  106 LPEATARHFMQQLASALQFLHENN-IIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPE  184 (429)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccCHH
Confidence            456778899999999999999999 9999999999999865      45899999999998876   4678999999999


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           72 YMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        72 ~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      +++..+|+.|+|+||+|+|+|++++|+.||..........  ..+ .........+...+..+.+|+...+..+|.+|.+
T Consensus       185 V~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~--~~~-k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~  261 (429)
T KOG0595|consen  185 VIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLL--YIK-KGNEIVPVLPAELSNPLRELLISLLQRNPKDRIS  261 (429)
T ss_pred             HHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHH--HHh-ccccccCchhhhccCchhhhhhHHHhcCccccCc
Confidence            9999999999999999999999999999987654333222  111 1111222333445556778999999999999988


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      ..+...+.
T Consensus       262 ~~~~~~~~  269 (429)
T KOG0595|consen  262 FEDFFDHP  269 (429)
T ss_pred             hHHhhhhh
Confidence            88776653

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.96  E-value=2.7e-29  Score=220.61  Aligned_cols=159  Identities=21%  Similarity=0.262  Sum_probs=127.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||+|||++| ++||||||+||+++.++.++|+|||+++.....      ....++..|+|||++.
T Consensus       117 l~~~~~~~~~~ql~~aL~~lH~~~-i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  195 (288)
T cd05093         117 LTQSQMLHIAQQIAAGMVYLASQH-FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM  195 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhc
Confidence            477889999999999999999999 999999999999999999999999998754322      1223467899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||........     ...+........+...+..+.+|+.+||+.+|.+|||+.
T Consensus       196 ~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~  270 (288)
T cd05093         196 YRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEV-----IECITQGRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIK  270 (288)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH-----HHHHHcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHH
Confidence            8889999999999999999998 7877654322211     111111111123344567899999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      +++..|+.+...
T Consensus       271 ~v~~~l~~~~~~  282 (288)
T cd05093         271 EIHSLLQNLAKA  282 (288)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.96  E-value=1.8e-29  Score=223.51  Aligned_cols=158  Identities=21%  Similarity=0.260  Sum_probs=121.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      ++|.++++++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++......      ...++..|+|||++.
T Consensus       135 ~~~~~~~~i~~~i~~al~~lH~~~-ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  213 (304)
T cd05096         135 ISYSSLLHVALQIASGMKYLSSLN-FVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECIL  213 (304)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCC-ccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHh
Confidence            467889999999999999999999 9999999999999999999999999987654321      234467899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCC--CCCCcchhHHhhhhhhhHhhhc---cccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGK--HIPPSHALDLIRSKNFLLLMDS---ALEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                      ++.++.++|||||||++|+|+++.  .||......... .........   ......++.++..+.+|+.+||..+|++|
T Consensus       214 ~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  292 (304)
T cd05096         214 MGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVI-ENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRER  292 (304)
T ss_pred             cCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHH-HHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhC
Confidence            889999999999999999999754  344332111111 011111111   11112344567889999999999999999


Q ss_pred             CCHHHHHHHHH
Q 019475          150 PNAKSLVISLM  160 (340)
Q Consensus       150 ps~~e~l~~l~  160 (340)
                      ||+.++.+.|+
T Consensus       293 Ps~~~i~~~l~  303 (304)
T cd05096         293 PSFSDIHAFLT  303 (304)
T ss_pred             cCHHHHHHHHh
Confidence            99999988875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.96  E-value=1.5e-29  Score=228.83  Aligned_cols=158  Identities=14%  Similarity=0.192  Sum_probs=122.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..++.|++.||.|||++| |+||||||+|||++.++.+||+|||+++.....   ....+|..|+|||++.+..
T Consensus       116 l~~~~~~~~~~qi~~aL~~LH~~g-ivHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  194 (355)
T cd07874         116 LDHERMSYLLYQMLCGIKHLHSAG-IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  194 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCChHHEEECCCCCEEEeeCcccccCCCccccCCccccCCccCHHHHcCCC
Confidence            467788899999999999999999 999999999999999999999999999865443   3346789999999999888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh------------------hhHhhhcc---------------c--
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN------------------FLLLMDSA---------------L--  122 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~------------------~~~~~~~~---------------~--  122 (340)
                      ++.++|||||||++|+|++|+.||........-...                  ........               .  
T Consensus       195 ~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (355)
T cd07874         195 YKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFP  274 (355)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccc
Confidence            999999999999999999999988654211110000                  00000000               0  


Q ss_pred             -cCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          123 -EGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       123 -~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                       ....+...+..+.+||.+||..||++|||+.|+++|.
T Consensus       275 ~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp  312 (355)
T cd07874         275 ADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHP  312 (355)
T ss_pred             cccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCc
Confidence             0001112346789999999999999999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=9.3e-30  Score=223.90  Aligned_cols=153  Identities=22%  Similarity=0.264  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.+...++.||+.||.|||++| ++||||||+|||++.+|.+||+|||+++..... ....|++.|+|||++.+..++
T Consensus        98 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  176 (291)
T cd05612          98 FSNSTGLFYASEIVCALEYLHSKE-IVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHN  176 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCCCHHHeEECCCCCEEEEecCcchhccCCcccccCChhhcCHHHHcCCCCC
Confidence            466788899999999999999999 999999999999999999999999998865543 345689999999999988899


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----HHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----AKS  154 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~~e  154 (340)
                      .++|||||||++|+|++|+.||........    ...+...  ...++...+..+.+||.+||+.||.+||+     +.+
T Consensus       177 ~~~DiwSlG~il~~l~~g~~pf~~~~~~~~----~~~i~~~--~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~  250 (291)
T cd05612         177 KAVDWWALGILIYEMLVGYPPFFDDNPFGI----YEKILAG--KLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADD  250 (291)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHHhC--CcCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHH
Confidence            999999999999999999998866432211    1111111  12344555778999999999999999995     999


Q ss_pred             HHHHHH
Q 019475          155 LVISLM  160 (340)
Q Consensus       155 ~l~~l~  160 (340)
                      ++.|.+
T Consensus       251 ~l~h~~  256 (291)
T cd05612         251 VKNHRW  256 (291)
T ss_pred             HhcCcc
Confidence            998754

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=1.7e-29  Score=221.87  Aligned_cols=156  Identities=15%  Similarity=0.169  Sum_probs=121.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.||+.||.|||++| ++||||||+||+++.++.+||+|||+++.....   ....++..|+|||++.+..
T Consensus       105 ~~~~~~~~~~~qi~~al~~lH~~~-ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  183 (288)
T cd07863         105 LPAETIKDLMRQFLRGLDFLHANC-IVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQST  183 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEECCCCCEEECccCccccccCcccCCCccccccccCchHhhCCC
Confidence            467888999999999999999999 999999999999999999999999998865433   2346788999999999888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh--------h-------cccc-------CCCCchhHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM--------D-------SALE-------GHFSNDEGTELV  135 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~--------~-------~~~~-------~~~~~~~~~~~~  135 (340)
                      ++.++|||||||++|+|++|.+||........-.. .....        .       ....       ....+..+..+.
T Consensus       184 ~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T cd07863         184 YATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGK-IFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGA  262 (288)
T ss_pred             CCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHH-HHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHH
Confidence            99999999999999999999988765422111100 00000        0       0000       001123456789


Q ss_pred             HHHHHhcccCCCCCCCHHHHHHH
Q 019475          136 RLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       136 ~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +++.+||+.||.+|||+.+++.|
T Consensus       263 ~li~~~L~~dP~~R~t~~~~l~h  285 (288)
T cd07863         263 QLLLEMLTFNPHKRISAFRALQH  285 (288)
T ss_pred             HHHHHHhccCcccCCCHHHHhcC
Confidence            99999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.96  E-value=8e-30  Score=227.97  Aligned_cols=152  Identities=18%  Similarity=0.296  Sum_probs=124.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+.
T Consensus        92 l~~~~~~~~~~qi~~aL~~LH~~~-ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  170 (328)
T cd05593          92 FSEDRTRFYGAEIVSALDYLHSGK-IVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDN  170 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCC
Confidence            467888999999999999999999 999999999999999999999999998753221    234689999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----C
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----N  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s  151 (340)
                      .++.++|||||||++|+|++|+.||.........    ..+..  ....++...+.++.+||.+||..||++|+     +
T Consensus       171 ~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~----~~~~~--~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~  244 (328)
T cd05593         171 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF----ELILM--EDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDD  244 (328)
T ss_pred             CCCccCCccccchHHHHHhhCCCCCCCCCHHHHH----HHhcc--CCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCC
Confidence            9999999999999999999999988654322111    11111  11234556778899999999999999997     8


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|.
T Consensus       245 ~~~il~h~  252 (328)
T cd05593         245 AKEIMRHS  252 (328)
T ss_pred             HHHHhcCC
Confidence            99998873

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=2.3e-29  Score=229.70  Aligned_cols=159  Identities=18%  Similarity=0.245  Sum_probs=120.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC-----CCCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-----GKSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-----~~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++....     .....||+.|+|||++.+
T Consensus       179 l~~~~~~~i~~qi~~aL~ylH~~~-IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~  257 (391)
T PHA03212        179 IAICDILAIERSVLRAIQYLHENR-IIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLAR  257 (391)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChhhhcC
Confidence            467889999999999999999999 99999999999999999999999999864322     123468999999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchh--------HHhh-----------------hhhhhHhh----hcccc--C
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHAL--------DLIR-----------------SKNFLLLM----DSALE--G  124 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~--------~~~~-----------------~~~~~~~~----~~~~~--~  124 (340)
                      ..++.++|||||||++|||++|..|+.....        ..+.                 ........    .....  .
T Consensus       258 ~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (391)
T PHA03212        258 DPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPG  337 (391)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCC
Confidence            8999999999999999999999977653210        0000                 00000000    00000  0


Q ss_pred             CCC-----chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          125 HFS-----NDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       125 ~~~-----~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ..+     ...+.++.+||.+||+.||++|||+.|+++|-+
T Consensus       338 ~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~  378 (391)
T PHA03212        338 SRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDFAA  378 (391)
T ss_pred             CCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcChh
Confidence            000     124567999999999999999999999998754

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=4.5e-29  Score=226.47  Aligned_cols=159  Identities=14%  Similarity=0.186  Sum_probs=122.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.|++.||.|||+++ |+||||||+|||++.++.+||+|||+++.....   ....+|..|+|||++.+..
T Consensus       123 ~~~~~~~~~~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~  201 (364)
T cd07875         123 LDHERMSYLLYQMLCGIKHLHSAG-IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  201 (364)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-eecCCCCHHHEEECCCCcEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCC
Confidence            357788899999999999999999 999999999999999999999999999865443   3346789999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh------------------Hhhhccc--c--------------
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL------------------LLMDSAL--E--------------  123 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~------------------~~~~~~~--~--------------  123 (340)
                      ++.++|||||||++|+|++|+.||........-.....                  .......  .              
T Consensus       202 ~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (364)
T cd07875         202 YKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFP  281 (364)
T ss_pred             CCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCcccccc
Confidence            99999999999999999999998865421111000000                  0000000  0              


Q ss_pred             --CCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          124 --GHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       124 --~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                        ..........+.+||.+||..||.+|||+.++++|.+
T Consensus       282 ~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~  320 (364)
T cd07875         282 ADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPY  320 (364)
T ss_pred             ccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCcc
Confidence              0001112357899999999999999999999998843

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.96  E-value=1.3e-29  Score=227.70  Aligned_cols=158  Identities=20%  Similarity=0.307  Sum_probs=120.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....       ....+|..|+|||++
T Consensus       100 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  178 (338)
T cd07859         100 LTPEHHQFFLYQLLRALKYIHTAN-VFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELC  178 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHH
Confidence            467889999999999999999999 999999999999999999999999998754321       234688999999998


Q ss_pred             cc--CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh-------------------hhhhhhHhhhc---cccCC---C
Q 019475           74 RT--GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI-------------------RSKNFLLLMDS---ALEGH---F  126 (340)
Q Consensus        74 ~~--~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~-------------------~~~~~~~~~~~---~~~~~---~  126 (340)
                      .+  ..++.++|||||||++|+|++|+.||........                   ...........   .....   .
T Consensus       179 ~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  258 (338)
T cd07859         179 GSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQK  258 (338)
T ss_pred             hccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHh
Confidence            75  5789999999999999999999988865421110                   00000000000   00000   0


Q ss_pred             CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          127 SNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       127 ~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      .+..++.+.+++.+||..+|++|||+.++++|-
T Consensus       259 ~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp  291 (338)
T cd07859         259 FPNADPLALRLLERLLAFDPKDRPTAEEALADP  291 (338)
T ss_pred             cCCCChHHHHHHHHHcCcCcccCCCHHHHhcCc
Confidence            113456789999999999999999999999873

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.96  E-value=3e-29  Score=220.89  Aligned_cols=157  Identities=22%  Similarity=0.339  Sum_probs=126.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++..+++++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++......      ...++..|+|||++.
T Consensus       129 l~~~~~~~i~~qi~~al~~LH~~~-ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  207 (293)
T cd05053         129 LTQKDLVSFAYQVARGMEFLASKK-CIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALF  207 (293)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-ccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhc
Confidence            467888999999999999999999 9999999999999999999999999988654321      123456799999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||+......     ....+........+...+..+.+|+.+||..+|++|||+.
T Consensus       208 ~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  282 (293)
T cd05053         208 DRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE-----LFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFK  282 (293)
T ss_pred             cCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHH-----HHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHH
Confidence            8889999999999999999997 877776542221     1222222222234456678899999999999999999999


Q ss_pred             HHHHHHHhhh
Q 019475          154 SLVISLMSLQ  163 (340)
Q Consensus       154 e~l~~l~~~~  163 (340)
                      ++++.|+.+.
T Consensus       283 eil~~l~~~~  292 (293)
T cd05053         283 QLVEDLDRML  292 (293)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.2e-29  Score=225.28  Aligned_cols=152  Identities=18%  Similarity=0.231  Sum_probs=123.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+.
T Consensus        90 ~~~~~~~~~~~qi~~~l~~lH~~~-i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  168 (312)
T cd05585          90 FDLSRARFYTAELLCALENLHKFN-VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGH  168 (312)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCC
Confidence            467788899999999999999999 999999999999999999999999998753221    234689999999999998


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC---CHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP---NAK  153 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp---s~~  153 (340)
                      .++.++|||||||++|+|++|+.||.........    ..+...  ...++...+..+.++|.+||..||.+||   ++.
T Consensus       169 ~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~  242 (312)
T cd05585         169 GYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMY----RKILQE--PLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQ  242 (312)
T ss_pred             CCCCccceechhHHHHHHHhCCCCcCCCCHHHHH----HHHHcC--CCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHH
Confidence            9999999999999999999999998764332211    111111  1234556778899999999999999997   467


Q ss_pred             HHHHHH
Q 019475          154 SLVISL  159 (340)
Q Consensus       154 e~l~~l  159 (340)
                      +++.|.
T Consensus       243 e~l~hp  248 (312)
T cd05585         243 EIKNHP  248 (312)
T ss_pred             HHHcCC
Confidence            777763

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.96  E-value=4.8e-29  Score=220.78  Aligned_cols=160  Identities=20%  Similarity=0.328  Sum_probs=128.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      ++|.+++.++.||+.||.|||++| ++||||||+||+++.++.+||+|||+++......      ...++..|+|||++.
T Consensus       134 ~~~~~~~~~~~qi~~al~~LH~~g-ivH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  212 (304)
T cd05101         134 MTFKDLVSCTYQVARGMEYLASQK-CIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALF  212 (304)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCC-eeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhc
Confidence            467788999999999999999999 9999999999999999999999999988654321      223456799999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++||||||+++|+|++ |..||.......     ....+........+..++..+.+|+.+||..+|.+|||+.
T Consensus       213 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  287 (304)
T cd05101         213 DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE-----LFKLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFK  287 (304)
T ss_pred             cCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH-----HHHHHHcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHH
Confidence            8889999999999999999998 666665432221     1222222222233456678899999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      ++++.|..+....
T Consensus       288 e~l~~l~~~~~~~  300 (304)
T cd05101         288 QLVEDLDRILTLT  300 (304)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998876543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.96  E-value=1.9e-29  Score=221.51  Aligned_cols=156  Identities=15%  Similarity=0.224  Sum_probs=121.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++..+..++.||+.||.|||+.+ ++||||||+||+++.++.+||+|||++......     ....+++.|+|||++.+
T Consensus        97 ~~~~~~~~~~~qi~~~L~~lH~~~-i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  175 (287)
T cd07848          97 VPPEKVRSYIYQLIKAIHWCHKND-IVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLG  175 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcC
Confidence            467788999999999999999999 999999999999999999999999998865432     23467899999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh-------------hccc-----c---------CCCCc
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM-------------DSAL-----E---------GHFSN  128 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~-----~---------~~~~~  128 (340)
                      ..++.++|||||||++|||++|+.||+........ .......             +...     .         .....
T Consensus       176 ~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (287)
T cd07848         176 APYGKAVDMWSVGCILGELSDGQPLFPGESEIDQL-FTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLG  254 (287)
T ss_pred             CCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHH-HHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhc
Confidence            88999999999999999999999988764221100 0000000             0000     0         00111


Q ss_pred             hhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          129 DEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       129 ~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ..+..+.+||.+||+.||++|||++++++|
T Consensus       255 ~~s~~~~dll~~~L~~~P~~R~s~~~~l~h  284 (287)
T cd07848         255 ILSGVLLDLMKNLLKLNPTDRYLTEQCLNH  284 (287)
T ss_pred             ccCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            246679999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.96  E-value=7.3e-29  Score=222.48  Aligned_cols=161  Identities=21%  Similarity=0.340  Sum_probs=128.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      ++|.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++......      ...++..|+|||++.
T Consensus       131 l~~~~~~~~~~qi~~al~~LH~~g-ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  209 (334)
T cd05100         131 LTFKDLVSCAYQVARGMEYLASQK-CIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALF  209 (334)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhc
Confidence            467888999999999999999999 9999999999999999999999999987654321      122346799999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||.......     ....+........+...+..+.+++.+||..+|.+|||+.
T Consensus       210 ~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  284 (334)
T cd05100         210 DRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE-----LFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFK  284 (334)
T ss_pred             cCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHH-----HHHHHHcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHH
Confidence            8899999999999999999998 777765432221     1222222222234455677899999999999999999999


Q ss_pred             HHHHHHHhhhhhcc
Q 019475          154 SLVISLMSLQKEAE  167 (340)
Q Consensus       154 e~l~~l~~~~~~~~  167 (340)
                      +++++|..+.....
T Consensus       285 ell~~l~~~~~~~~  298 (334)
T cd05100         285 QLVEDLDRVLTVTS  298 (334)
T ss_pred             HHHHHHHHHhhhcC
Confidence            99999998876543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.96  E-value=1.7e-29  Score=220.99  Aligned_cols=156  Identities=17%  Similarity=0.277  Sum_probs=124.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+||+++.++.++|+|||++......    ....||+.|+|||++.+.
T Consensus        94 l~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  172 (280)
T cd05608          94 FPEPRACFYTAQIISGLEHLHQRR-IIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGE  172 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCC
Confidence            467888999999999999999999 999999999999999999999999998765433    234678999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----C
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----N  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s  151 (340)
                      .++.++|||||||++|+|++|+.||...................  ....+...+..+.+++.+||+.||++||     +
T Consensus       173 ~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~  250 (280)
T cd05608         173 EYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILND--SVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGN  250 (280)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhccc--CCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCC
Confidence            99999999999999999999999886532211111111111111  1123455678899999999999999999     7


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      ++++++|-
T Consensus       251 ~~~~l~h~  258 (280)
T cd05608         251 CDGLRTHP  258 (280)
T ss_pred             HHHHhcCh
Confidence            88888874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.96  E-value=1.5e-29  Score=222.18  Aligned_cols=157  Identities=18%  Similarity=0.293  Sum_probs=119.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++..+..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++.....    ....+++.|+|||++.+ 
T Consensus       100 ~~~~~~~~~~~qi~~aL~~LH~~~-ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  178 (288)
T cd07871         100 MSMHNVKIFMFQLLRGLSYCHKRK-ILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGS  178 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHEEECCCCCEEECcCcceeeccCCCccccCceecccccChHHhcCC
Confidence            356788899999999999999999 999999999999999999999999998754322    23457889999999875 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh--------------------HhhhccccC----CCCchhH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL--------------------LLMDSALEG----HFSNDEG  131 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~----~~~~~~~  131 (340)
                      ..++.++||||+||++|+|++|+.||........-.....                    ....+....    ......+
T Consensus       179 ~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (288)
T cd07871         179 TEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLD  258 (288)
T ss_pred             cccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCC
Confidence            4588999999999999999999998876432211110000                    000000000    0112345


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+..+||.+||..||.+|||+.|+++|
T Consensus       259 ~~~~dll~~mL~~dp~~R~t~~~~l~h  285 (288)
T cd07871         259 TDGIDLLSSLLLYETKSRISAEAALRH  285 (288)
T ss_pred             HHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            778999999999999999999999876

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.96  E-value=2.3e-29  Score=222.71  Aligned_cols=158  Identities=16%  Similarity=0.216  Sum_probs=117.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++.+.+..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....    ....+++.|+|||++.+.
T Consensus       100 ~~~~~~~~~~~qi~~al~~lH~~~-ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  178 (303)
T cd07869         100 LHPENVKLFLFQLLRGLSYIHQRY-ILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGS  178 (303)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCC
Confidence            356788899999999999999999 999999999999999999999999998754321    234678999999998754


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh------------------ccccCCCCc---------
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD------------------SALEGHFSN---------  128 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~---------  128 (340)
                       .++.++|||||||++|+|++|..||..................                  .......+.         
T Consensus       179 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (303)
T cd07869         179 TEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKL  258 (303)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhcc
Confidence             5788999999999999999999998753211100000000000                  000000000         


Q ss_pred             hhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          129 DEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       129 ~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ..+..+.+|+.+||+.||.+|||+.++++|-
T Consensus       259 ~~~~~~~dli~~mL~~dp~~R~s~~~~l~h~  289 (303)
T cd07869         259 SYVNHAEDLASKLLQCFPKNRLSAQAALSHE  289 (303)
T ss_pred             CCChHHHHHHHHHhccCchhccCHHHHhcCc
Confidence            1235688999999999999999999999873

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.96  E-value=4.7e-29  Score=218.54  Aligned_cols=162  Identities=23%  Similarity=0.361  Sum_probs=126.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.|++.||.|||+++ ++||||||+||+++.++.++|+|||+++......       ...++..|++||.+
T Consensus       104 l~~~~~~~i~~~l~~~l~~lH~~~-i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~  182 (283)
T cd05080         104 LNLAQLLLFAQQICEGMAYLHSQH-YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECL  182 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHh
Confidence            578899999999999999999999 9999999999999999999999999988654322       12345679999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHH---h-------hhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDL---I-------RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      .+..++.++||||||+++|+|++|..|+.......   .       .................+...+..+.+++.+||.
T Consensus       183 ~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  262 (283)
T cd05080         183 KENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWE  262 (283)
T ss_pred             cccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhc
Confidence            88889999999999999999999998764321110   0       0011111222222223345567889999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhh
Q 019475          144 SEARERPNAKSLVISLMSLQ  163 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~  163 (340)
                      .+|++|||+.++++.|+.+.
T Consensus       263 ~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         263 TEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             cChhhCCCHHHHHHHHHHhh
Confidence            99999999999999988753

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>PTZ00284 protein kinase; Provisional

Probab=99.96  E-value=1.8e-29  Score=236.19  Aligned_cols=160  Identities=18%  Similarity=0.200  Sum_probs=119.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCC----------------CeEEecccCcccCCCC-CCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDG----------------NPRLSSFGLMKNSRDG-KSYS   62 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~----------------~~kl~Dfg~~~~~~~~-~~~~   62 (340)
                      |++.++..|+.||+.||.|||++ | ||||||||+|||++.++                .+||+|||.+...... ....
T Consensus       228 l~~~~~~~i~~qi~~aL~yLH~~~g-IiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~  306 (467)
T PTZ00284        228 FSHRHLAQIIFQTGVALDYFHTELH-LMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIV  306 (467)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCC-eecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCcccccccc
Confidence            46778899999999999999985 7 99999999999998765                4999999987654332 4557


Q ss_pred             cCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh-------------------hhHhhhcc--
Q 019475           63 TNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN-------------------FLLLMDSA--  121 (340)
Q Consensus        63 ~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~-------------------~~~~~~~~--  121 (340)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||............                   ...+....  
T Consensus       307 gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  386 (467)
T PTZ00284        307 STRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQ  386 (467)
T ss_pred             CCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhccc
Confidence            899999999999999999999999999999999999988654211100000                   00000000  


Q ss_pred             ccCCCC---------------chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475          122 LEGHFS---------------NDEGTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus       122 ~~~~~~---------------~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                      +.....               ......+.+||.+||.+||.+|||+.|+++|-+-
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~  441 (467)
T PTZ00284        387 LRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYV  441 (467)
T ss_pred             ccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccc
Confidence            000000               0113567899999999999999999999998554

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.96  E-value=5.5e-29  Score=216.73  Aligned_cols=156  Identities=20%  Similarity=0.287  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC------cccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS------YSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~   74 (340)
                      +++..++.++.|++.||.|||+++ ++||||||+||+++.++.+||+|||+++.......      ...+..|++||.+.
T Consensus       110 ~~~~~~~~~~~~i~~aL~~lH~~~-i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  188 (273)
T cd05035         110 LPLQTLLKFMVDIALGMEYLSNRN-FIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLA  188 (273)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcc
Confidence            467788999999999999999999 99999999999999999999999999886543321      23356899999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||......     .....+........+...+..+.+++.+||+.||.+|||+.
T Consensus       189 ~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  263 (273)
T cd05035         189 DRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENH-----EIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFT  263 (273)
T ss_pred             cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            8889999999999999999999 77776543221     11122222222234556678899999999999999999999


Q ss_pred             HHHHHHHhh
Q 019475          154 SLVISLMSL  162 (340)
Q Consensus       154 e~l~~l~~~  162 (340)
                      +++++|..+
T Consensus       264 e~~~~l~~~  272 (273)
T cd05035         264 KLREVLENI  272 (273)
T ss_pred             HHHHHHHhh
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.96  E-value=3.1e-29  Score=227.11  Aligned_cols=159  Identities=14%  Similarity=0.175  Sum_probs=121.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....   ....+|+.|+|||++.+..
T Consensus       120 ~~~~~~~~~~~qi~~~L~~LH~~~-ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~  198 (359)
T cd07876         120 LDHERMSYLLYQMLCGIKHLHSAG-IIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMG  198 (359)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHEEECCCCCEEEecCCCccccccCccCCCCcccCCCCCchhccCCC
Confidence            356778889999999999999999 999999999999999999999999998754332   2346789999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhh------------------hhhHhhhc--cccC-------------
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK------------------NFLLLMDS--ALEG-------------  124 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~------------------~~~~~~~~--~~~~-------------  124 (340)
                      ++.++|||||||++|+|++|+.||........-..                  ........  ....             
T Consensus       199 ~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (359)
T cd07876         199 YKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFP  278 (359)
T ss_pred             CCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccc
Confidence            99999999999999999999998865321100000                  00000000  0000             


Q ss_pred             ---CCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          125 ---HFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       125 ---~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                         ......+..+.+||.+||..||++|||+.|+++|.+
T Consensus       279 ~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~  317 (359)
T cd07876         279 SESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPY  317 (359)
T ss_pred             cccccccccchhHHHHHHHHhccCcccCCCHHHHhcCch
Confidence               001123467899999999999999999999998854

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-29  Score=209.19  Aligned_cols=141  Identities=18%  Similarity=0.276  Sum_probs=121.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVTP   80 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~   80 (340)
                      +.....-++.||+.||+|||+++ |++|||||+|||+|.+|++||+|||+++..... -+.+||+.|+|||++.+.+++.
T Consensus       142 ~e~~arFYAAeivlAleylH~~~-iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynk  220 (355)
T KOG0616|consen  142 SEPHARFYAAEIVLALEYLHSLD-IIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNK  220 (355)
T ss_pred             CchhHHHHHHHHHHHHHHHHhcC-eeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCc
Confidence            44566678999999999999999 999999999999999999999999999987655 4668999999999999999999


Q ss_pred             ccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           81 ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        81 ~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                      ++|.|+|||++|||+.|.+||..+...    .....++...  -.+|.-.+.++++|+..+|+.|-.+|
T Consensus       221 avDWWalGVLIYEMlaG~pPF~~~~~~----~iY~KI~~~~--v~fP~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  221 AVDWWALGVLIYEMLAGYPPFYDDNPI----QIYEKILEGK--VKFPSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             chhHHHHHHHHHHHHcCCCCCcCCChH----HHHHHHHhCc--ccCCcccCHHHHHHHHHHHhhhhHhh
Confidence            999999999999999999999887542    2223333322  24677778899999999999999999

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.96  E-value=3.9e-29  Score=218.40  Aligned_cols=153  Identities=18%  Similarity=0.258  Sum_probs=122.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCcccccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~   75 (340)
                      ++.+++.++.|++.||.|||+.+ ++|+||||+||+++.++.++|+|||+++......      ...++..|+|||++.+
T Consensus       117 ~~~~~~~~~~~l~~~l~~lH~~~-~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  195 (277)
T cd05062         117 SLKKMIQMAGEIADGMAYLNANK-FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKD  195 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-cccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhc
Confidence            56788999999999999999999 9999999999999999999999999987543321      2234678999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||++ |..||......     .....+........+...+..+.+++.+||+.+|++|||+.+
T Consensus       196 ~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  270 (277)
T cd05062         196 GVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNE-----QVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLE  270 (277)
T ss_pred             CCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH-----HHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            889999999999999999999 56666543221     111111111122334556778999999999999999999999


Q ss_pred             HHHHHH
Q 019475          155 LVISLM  160 (340)
Q Consensus       155 ~l~~l~  160 (340)
                      ++++|+
T Consensus       271 ~l~~l~  276 (277)
T cd05062         271 IISSIK  276 (277)
T ss_pred             HHHHhh
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.96  E-value=4.8e-29  Score=219.25  Aligned_cols=158  Identities=18%  Similarity=0.307  Sum_probs=128.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.|++.||.|||+++ ++||||||+||+++.++.+||+|||+++......      ...++..|++||.+.
T Consensus       124 l~~~~~~~i~~~i~~~l~~LH~~~-ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~  202 (290)
T cd05045         124 LTMGDLISFAWQISRGMQYLAEMK-LVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLF  202 (290)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHc
Confidence            467888999999999999999999 9999999999999999999999999987543221      223467899999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++||||||+++|+|++ |..||......     .+............+...+.++.+++.+||+.+|++||++.
T Consensus       203 ~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~  277 (290)
T cd05045         203 DHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPE-----RLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFA  277 (290)
T ss_pred             cCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHH-----HHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHH
Confidence            8889999999999999999998 88777654222     22223333333344556678899999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 019475          154 SLVISLMSLQK  164 (340)
Q Consensus       154 e~l~~l~~~~~  164 (340)
                      +++..|+.+..
T Consensus       278 ~i~~~l~~~~~  288 (290)
T cd05045         278 DISKELEKMMV  288 (290)
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.96  E-value=1.6e-29  Score=225.62  Aligned_cols=152  Identities=19%  Similarity=0.326  Sum_probs=124.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+.
T Consensus        92 ~~~~~~~~~~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  170 (323)
T cd05595          92 FTEERARFYGAEIVSALEYLHSRD-VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDN  170 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCC
Confidence            467889999999999999999999 999999999999999999999999998753221    234689999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----C
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----N  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s  151 (340)
                      .++.++|||||||++|+|++|+.||.........    ..+...  ...++...++.+.++|.+||..||.+||     +
T Consensus       171 ~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~----~~~~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~  244 (323)
T cd05595         171 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF----ELILME--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSD  244 (323)
T ss_pred             CCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHH----HHHhcC--CCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCC
Confidence            9999999999999999999999888654322111    111111  1124556678899999999999999998     8


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|-
T Consensus       245 ~~~~l~h~  252 (323)
T cd05595         245 AKEVMEHR  252 (323)
T ss_pred             HHHHHcCC
Confidence            99998873

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.96  E-value=5.2e-29  Score=217.79  Aligned_cols=154  Identities=19%  Similarity=0.284  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..++.|++.||.|||+++ ++||||||+||+++.++.++|+|||+++.....      ....+++.|+|||++.
T Consensus       119 l~~~~~~~~~~~i~~~l~~lH~~~-i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  197 (280)
T cd05049         119 LTLSQLLQIAVQIASGMVYLASQH-FVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIM  197 (280)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhCC-eeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhc
Confidence            357788999999999999999999 999999999999999999999999998754322      2233467899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||........     ...+........+...+..+.+++.+||..+|++||++.
T Consensus       198 ~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  272 (280)
T cd05049         198 YRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEV-----IECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIK  272 (280)
T ss_pred             cCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHH-----HHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCCCHH
Confidence            9999999999999999999998 9888765432211     111112222233445678899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      |+++.|.
T Consensus       273 eil~~l~  279 (280)
T cd05049         273 DIHERLQ  279 (280)
T ss_pred             HHHHHhh
Confidence            9998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.96  E-value=4.2e-29  Score=223.45  Aligned_cols=152  Identities=18%  Similarity=0.238  Sum_probs=124.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.....++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++..... ....||+.|+|||++.+..++
T Consensus       115 ~~~~~~~~~~~qi~~aL~~LH~~~-ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  193 (329)
T PTZ00263        115 FPNDVAKFYHAELVLAFEYLHSKD-IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHG  193 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCCCHHHEEECCCCCEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCCC
Confidence            356777889999999999999999 999999999999999999999999999876543 345689999999999998899


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----HHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----AKS  154 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~~e  154 (340)
                      .++|||||||++|+|++|..||........    ...+...  ...++...+..+.+||.+||+.||.+||+     +.+
T Consensus       194 ~~~DiwslG~il~elltg~~pf~~~~~~~~----~~~i~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~  267 (329)
T PTZ00263        194 KAVDWWTMGVLLYEFIAGYPPFFDDTPFRI----YEKILAG--RLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVAD  267 (329)
T ss_pred             CcceeechHHHHHHHHcCCCCCCCCCHHHH----HHHHhcC--CcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHH
Confidence            999999999999999999999865432111    1111111  12234456678999999999999999986     789


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      ++.|.
T Consensus       268 ll~hp  272 (329)
T PTZ00263        268 VKNHP  272 (329)
T ss_pred             HhcCC
Confidence            98874

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.96  E-value=4.6e-29  Score=217.91  Aligned_cols=154  Identities=19%  Similarity=0.305  Sum_probs=123.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC---CeEEecccCcccCCCCC------CcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG---NPRLSSFGLMKNSRDGK------SYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE   71 (340)
                      ++|..+++++.||+.||.|||+++ ++||||||+||+++.++   .+||+|||+++......      ....+..|+|||
T Consensus       113 ~~~~~~~~~~~qi~~~l~~LH~~~-ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  191 (277)
T cd05036         113 LTMKDLLFCARDVAKGCKYLEENH-FIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPE  191 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHH
Confidence            467889999999999999999999 99999999999998765   58999999988653221      122346799999


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           72 YMRTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        72 ~~~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      ++.+..++.++|||||||++|+|++ |..||.......     ....+........+...+..+.+++.+||+.+|++||
T Consensus       192 ~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp  266 (277)
T cd05036         192 AFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE-----VMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRP  266 (277)
T ss_pred             HHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH-----HHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCc
Confidence            9998899999999999999999997 887776543221     1222222223334556678899999999999999999


Q ss_pred             CHHHHHHHHH
Q 019475          151 NAKSLVISLM  160 (340)
Q Consensus       151 s~~e~l~~l~  160 (340)
                      |+.+++++|.
T Consensus       267 s~~~vl~~l~  276 (277)
T cd05036         267 NFATILERIQ  276 (277)
T ss_pred             CHHHHHHHhh
Confidence            9999999985

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.96  E-value=3.8e-29  Score=226.00  Aligned_cols=156  Identities=17%  Similarity=0.221  Sum_probs=120.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc--
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT--   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~--   75 (340)
                      +......++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....    ....||..|+|||++..  
T Consensus       166 ~~~~~~~i~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  244 (353)
T PLN00034        166 DEQFLADVARQILSGIAYLHRRH-IVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDL  244 (353)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-EeecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCccccCcccccccc
Confidence            34567789999999999999999 999999999999999999999999998865432    34578999999998853  


Q ss_pred             ---CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           76 ---GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        76 ---~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                         ...+.++|||||||++|||++|+.||.........  .....+........+...+.++.+||.+||..||++|||+
T Consensus       245 ~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~  322 (353)
T PLN00034        245 NHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWA--SLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSA  322 (353)
T ss_pred             ccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHH--HHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCH
Confidence               23456899999999999999999988632211111  1111111111223344567889999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          153 KSLVISLM  160 (340)
Q Consensus       153 ~e~l~~l~  160 (340)
                      .|+++|-+
T Consensus       323 ~ell~hp~  330 (353)
T PLN00034        323 MQLLQHPF  330 (353)
T ss_pred             HHHhcCcc
Confidence            99999854

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.96  E-value=6e-29  Score=215.92  Aligned_cols=156  Identities=19%  Similarity=0.256  Sum_probs=125.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||+|||+++ ++||||||+||+++.++.++++|||.+.......     ...++..|+|||.+.+
T Consensus       104 l~~~~~~~~~~~i~~al~~lH~~~-iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  182 (266)
T cd05064         104 LVAGQLMGMLPGLASGMKYLSEMG-YVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQY  182 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeeccccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhh
Confidence            578899999999999999999999 9999999999999999999999999876543221     1234568999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++||+++ |..||.......     ....+........+..++..+.+++.+||+.+|.+||++.+
T Consensus       183 ~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~  257 (266)
T cd05064         183 HHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQD-----VIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQ  257 (266)
T ss_pred             CCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH-----HHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHH
Confidence            999999999999999999875 888876542221     11222222223345567788999999999999999999999


Q ss_pred             HHHHHHhh
Q 019475          155 LVISLMSL  162 (340)
Q Consensus       155 ~l~~l~~~  162 (340)
                      +++.|..+
T Consensus       258 i~~~l~~~  265 (266)
T cd05064         258 IHSILSKM  265 (266)
T ss_pred             HHHHHHhh
Confidence            99988654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.96  E-value=5.5e-29  Score=218.10  Aligned_cols=155  Identities=23%  Similarity=0.339  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+.+.++.|++.||.|||+++ ++||||||+|||++.++.+||+|||+++.....      ....++..|++||++.
T Consensus       121 ~~~~~~~~i~~~i~~al~~lH~~~-i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  199 (283)
T cd05090         121 LDHGDFLHIAIQIAAGMEYLSSHF-FVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIM  199 (283)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcC-eehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhc
Confidence            357788899999999999999999 999999999999999999999999998765322      2234466799999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||......     ...+.+........+..++..+.+++.+||+.+|.+||++.
T Consensus       200 ~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~  274 (283)
T cd05090         200 YGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQ-----EVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFK  274 (283)
T ss_pred             cCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH-----HHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHH
Confidence            8889999999999999999998 88777553221     11222222222234455678899999999999999999999


Q ss_pred             HHHHHHHh
Q 019475          154 SLVISLMS  161 (340)
Q Consensus       154 e~l~~l~~  161 (340)
                      +++++|..
T Consensus       275 ~i~~~l~~  282 (283)
T cd05090         275 DIHTRLRS  282 (283)
T ss_pred             HHHHHhhc
Confidence            99998753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.96  E-value=5e-29  Score=218.06  Aligned_cols=154  Identities=19%  Similarity=0.248  Sum_probs=123.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |++.+++.++.||+.||+|||+++ ++||||||+||+++.++.+||+|||++......      ....+++.|+|||.+.
T Consensus       119 l~~~~~~~~~~qi~~al~~LH~~~-i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  197 (280)
T cd05092         119 LTLGQMLAIASQIASGMVYLASLH-FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESIL  197 (280)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhc
Confidence            467889999999999999999999 999999999999999999999999998754322      1223467899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |.+||.......     .............+..++..+.+|+.+||+.||.+||++.
T Consensus       198 ~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~  272 (280)
T cd05092         198 YRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTE-----AIECITQGRELERPRTCPPEVYAIMQGCWQREPQQRMVIK  272 (280)
T ss_pred             cCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHH-----HHHHHHcCccCCCCCCCCHHHHHHHHHHccCChhhCCCHH
Confidence            8899999999999999999998 777764432111     1111111222233445678899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      +++..|+
T Consensus       273 ~l~~~l~  279 (280)
T cd05092         273 DIHSRLQ  279 (280)
T ss_pred             HHHHHHh
Confidence            9998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=2.2e-29  Score=224.03  Aligned_cols=151  Identities=18%  Similarity=0.283  Sum_probs=121.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||+|||+++ |+||||||+|||++.++.++|+|||+++....    .....||+.|+|||++.+.
T Consensus        93 ~~~~~~~~~~~qi~~~l~~lH~~~-ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (316)
T cd05620          93 FDLYRATFYAAEIVCGLQFLHSKG-IIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGL  171 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCC
Confidence            466788899999999999999999 99999999999999999999999999874321    2345689999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH-HHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA-KSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~-~e~  155 (340)
                      .++.++|||||||++|+|++|..||........     .+.+.. .....+...+.++.++|.+||..||++||++ +++
T Consensus       172 ~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~  245 (316)
T cd05620         172 KYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDEL-----FESIRV-DTPHYPRWITKESKDILEKLFERDPTRRLGVVGNI  245 (316)
T ss_pred             CCCcccchhhhHHHHHHHHhCCCCCCCCCHHHH-----HHHHHh-CCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHH
Confidence            999999999999999999999999876532211     111111 1122344567789999999999999999997 466


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      ++|
T Consensus       246 ~~h  248 (316)
T cd05620         246 RGH  248 (316)
T ss_pred             HcC
Confidence            655

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.96  E-value=6.3e-29  Score=215.09  Aligned_cols=155  Identities=22%  Similarity=0.327  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.|++.||+|||+++ ++||||||+||+++.++.++|+|||++.......     ...++..|+|||++.+
T Consensus       100 ~~~~~~~~~~~~l~~~l~~LH~~~-i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  178 (261)
T cd05072         100 VLLPKLIDFSAQIAEGMAYIERKN-YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINF  178 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhcc
Confidence            367788999999999999999999 9999999999999999999999999998654322     2234567999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|+|++ |..||........     ...+......+.....+..+.+++.+||..+|++|||+++
T Consensus       179 ~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  253 (261)
T cd05072         179 GSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDV-----MSALQRGYRMPRMENCPDELYDIMKTCWKEKAEERPTFDY  253 (261)
T ss_pred             CCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHH-----HHHHHcCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHH
Confidence            889999999999999999998 8877765422211     1111112222233456678999999999999999999999


Q ss_pred             HHHHHHh
Q 019475          155 LVISLMS  161 (340)
Q Consensus       155 ~l~~l~~  161 (340)
                      +.+.|+.
T Consensus       254 i~~~l~~  260 (261)
T cd05072         254 LQSVLDD  260 (261)
T ss_pred             HHHHHhc
Confidence            9998875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=3.6e-29  Score=234.30  Aligned_cols=152  Identities=18%  Similarity=0.233  Sum_probs=123.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+...++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....      ....||+.|+|||++.
T Consensus       166 l~~~~~~~i~~qi~~aL~~lH~~~-ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~  244 (478)
T PTZ00267        166 FQEYEVGLLFYQIVLALDEVHSRK-MMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWE  244 (478)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhC
Confidence            356678889999999999999999 999999999999999999999999999865432      2346899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      +..++.++|||||||++|+|++|+.||.......+    ...+... .....+...+.++.++|.+||..+|++||++.+
T Consensus       245 ~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~----~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~  319 (478)
T PTZ00267        245 RKRYSKKADMWSLGVILYELLTLHRPFKGPSQREI----MQQVLYG-KYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQ  319 (478)
T ss_pred             CCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHHhC-CCCCCCccCCHHHHHHHHHHhccChhhCcCHHH
Confidence            88999999999999999999999998865432211    1111111 112234456778999999999999999999999


Q ss_pred             HHHH
Q 019475          155 LVIS  158 (340)
Q Consensus       155 ~l~~  158 (340)
                      ++.+
T Consensus       320 ~l~~  323 (478)
T PTZ00267        320 LLHT  323 (478)
T ss_pred             HHhC
Confidence            9865

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.96  E-value=7.1e-29  Score=215.93  Aligned_cols=157  Identities=20%  Similarity=0.262  Sum_probs=124.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.|++.||+|||+++ ++||||||+||+++.++.+||+|||++......   .....+..|+|||++.+..
T Consensus       109 l~~~~~~~~~~~i~~al~~lH~~~-i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~  187 (270)
T cd05047         109 LSSQQLLHFAADVARGMDYLSQKQ-FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV  187 (270)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeecccccceEEEcCCCeEEECCCCCccccchhhhccCCCCccccCChHHHccCC
Confidence            467888999999999999999999 999999999999999999999999998643221   1122356799999998888


Q ss_pred             CCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      ++.++|||||||++|||++ |..||......     .....+........+...+.++.+++.+||..+|.+|||+.+++
T Consensus       188 ~~~~~Di~slG~il~el~~~g~~pf~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il  262 (270)
T cd05047         188 YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA-----ELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL  262 (270)
T ss_pred             CCchhhHHHHHHHHHHHHcCCCCCccccCHH-----HHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHH
Confidence            9999999999999999997 88777543211     11112222222233445567899999999999999999999999


Q ss_pred             HHHHhhh
Q 019475          157 ISLMSLQ  163 (340)
Q Consensus       157 ~~l~~~~  163 (340)
                      ..|..+.
T Consensus       263 ~~l~~~~  269 (270)
T cd05047         263 VSLNRML  269 (270)
T ss_pred             HHHHHhh
Confidence            9987754

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.96  E-value=6.3e-29  Score=220.31  Aligned_cols=160  Identities=22%  Similarity=0.349  Sum_probs=128.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      ++|.++++++.|++.||+|||+++ ++||||||+||+++.++.++|+|||.++......      ...++..|+|||++.
T Consensus       137 l~~~~~~~~~~qi~~aL~~lH~~g-i~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  215 (307)
T cd05098         137 LSFKDLVSCAYQVARGMEYLASKK-CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF  215 (307)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhc
Confidence            467889999999999999999999 9999999999999999999999999987654321      112346799999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......     .....+........+...+.++.+|+.+||..+|.+|||+.
T Consensus       216 ~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  290 (307)
T cd05098         216 DRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE-----ELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK  290 (307)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHH-----HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccChhhCcCHH
Confidence            8889999999999999999998 77666543221     12222222222334556678999999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      ++++.|..+....
T Consensus       291 evl~~l~~~~~~~  303 (307)
T cd05098         291 QLVEDLDRILALT  303 (307)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=4e-29  Score=233.64  Aligned_cols=157  Identities=18%  Similarity=0.208  Sum_probs=130.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------------CcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------------SYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------------~~~~~~~   66 (340)
                      |+..++++|+.++++|+++||... +|||||||-+||||+.+|+.||||||.+.......             ...+|+.
T Consensus       141 lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~  220 (738)
T KOG1989|consen  141 LTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQ  220 (738)
T ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCcc
Confidence            567899999999999999999986 59999999999999999999999999987433221             1136899


Q ss_pred             cCCccccc---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           67 FTPPEYMR---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        67 y~aPE~~~---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      |++||++.   +.+++.|+|||+|||+||.|+....||...+.        ..++...+.-+..+.++..+.+||+.||+
T Consensus       221 YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~--------laIlng~Y~~P~~p~ys~~l~~LI~~mL~  292 (738)
T KOG1989|consen  221 YRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK--------LAILNGNYSFPPFPNYSDRLKDLIRTMLQ  292 (738)
T ss_pred             ccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc--------eeEEeccccCCCCccHHHHHHHHHHHHhc
Confidence            99999874   67799999999999999999999999865422        22333334333345789999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhh
Q 019475          144 SEARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~~~  165 (340)
                      .+|++||++-+++..+..+...
T Consensus       293 ~nP~~RPnI~Qv~~~~~~l~~~  314 (738)
T KOG1989|consen  293 PNPDERPNIYQVLEEIFELANK  314 (738)
T ss_pred             cCcccCCCHHHHHHHHHHHhcC
Confidence            9999999999999998777653

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.96  E-value=1.8e-29  Score=226.25  Aligned_cols=156  Identities=21%  Similarity=0.252  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+
T Consensus       102 ~~~~~~~~~~~qi~~~l~~lH~~~-ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  180 (332)
T cd05614         102 FSEDEVRFYSGEIILALEHLHKLG-IVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRG  180 (332)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcC
Confidence            467888999999999999999999 999999999999999999999999998754322     23468999999999986


Q ss_pred             C-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC----
Q 019475           76 G-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP----  150 (340)
Q Consensus        76 ~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp----  150 (340)
                      . .++.++|||||||++|||++|..||...............+..  .....+...+..+.+++.+||..||++||    
T Consensus       181 ~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~  258 (332)
T cd05614         181 KGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILK--CDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGP  258 (332)
T ss_pred             CCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhc--CCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCC
Confidence            5 4788999999999999999999988543211111111111111  12234456678899999999999999999    


Q ss_pred             -CHHHHHHHH
Q 019475          151 -NAKSLVISL  159 (340)
Q Consensus       151 -s~~e~l~~l  159 (340)
                       ++.++++|.
T Consensus       259 ~~~~~~l~h~  268 (332)
T cd05614         259 QGASEIKEHP  268 (332)
T ss_pred             CCHHHHHcCC
Confidence             788998874

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.96  E-value=6.7e-29  Score=219.73  Aligned_cols=160  Identities=20%  Similarity=0.258  Sum_probs=126.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      |++.+++.++.||+.||+|||++| ++||||||+|||++.++.+||+|||++......   ....++..|++||.+.+..
T Consensus       121 l~~~~~~~~~~qi~~al~~LH~~g-i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  199 (303)
T cd05088         121 LSSQQLLHFAADVARGMDYLSQKQ-FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV  199 (303)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccccccchheEEecCCCcEEeCccccCcccchhhhcccCCCcccccCHHHHhccC
Confidence            467789999999999999999999 999999999999999999999999998643221   1122356799999998888


Q ss_pred             CCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      ++.++|||||||++|+|++ |..||.......     ....+........+...+..+.+|+.+||+.+|++||++.+++
T Consensus       200 ~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  274 (303)
T cd05088         200 YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE-----LYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL  274 (303)
T ss_pred             CcccccchhhhhHHHHHHhcCCCCcccCChHH-----HHHHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence            9999999999999999998 888775432211     1111222222223344567899999999999999999999999


Q ss_pred             HHHHhhhhhc
Q 019475          157 ISLMSLQKEA  166 (340)
Q Consensus       157 ~~l~~~~~~~  166 (340)
                      +.|..+....
T Consensus       275 ~~l~~~~~~~  284 (303)
T cd05088         275 VSLNRMLEER  284 (303)
T ss_pred             HHHHHHHHhh
Confidence            9998876654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.96  E-value=1.2e-28  Score=219.25  Aligned_cols=160  Identities=22%  Similarity=0.355  Sum_probs=127.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      ++|.++++++.||+.||.|||++| ++||||||+||+++.++.+||+|||.++......      ...++..|++||++.
T Consensus       131 l~~~~~~~~~~qi~~aL~~lH~~g-i~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  209 (314)
T cd05099         131 LSFKDLVSCAYQVARGMEYLESRR-CIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALF  209 (314)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHc
Confidence            467888999999999999999999 9999999999999999999999999998654321      122346799999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......     .....+........+..++.++.+++.+||..+|++|||+.
T Consensus       210 ~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~  284 (314)
T cd05099         210 DRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVE-----ELFKLLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFK  284 (314)
T ss_pred             cCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHH
Confidence            8889999999999999999999 77776543221     11112222222233455677899999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      ++++.|..+....
T Consensus       285 ~ll~~l~~~~~~~  297 (314)
T cd05099         285 QLVEALDKVLAAV  297 (314)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998876643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.96  E-value=9.8e-30  Score=227.25  Aligned_cols=152  Identities=20%  Similarity=0.341  Sum_probs=123.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.++..++.||+.||.|||+ ++ |+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+
T Consensus        92 l~~~~~~~~~~qi~~aL~~lH~~~~-ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  170 (325)
T cd05594          92 FSEDRARFYGAEIVSALDYLHSEKN-VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLED  170 (325)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCC-EEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHcc
Confidence            4678899999999999999997 67 999999999999999999999999998753221    23468999999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----  150 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----  150 (340)
                      ..++.++|||||||++|+|++|..||..........    .+...  ...++...++++.+|+.+||+.||.+|+     
T Consensus       171 ~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~----~i~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  244 (325)
T cd05594         171 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFE----LILME--EIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPD  244 (325)
T ss_pred             CCCCCccccccccceeeeeccCCCCCCCCCHHHHHH----HHhcC--CCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCC
Confidence            899999999999999999999999886543221111    11111  1234555678899999999999999996     


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      ++.++++|.
T Consensus       245 ~~~~il~h~  253 (325)
T cd05594         245 DAKEIMQHK  253 (325)
T ss_pred             CHHHHhcCC
Confidence            899999874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.96  E-value=2.6e-29  Score=223.92  Aligned_cols=151  Identities=18%  Similarity=0.289  Sum_probs=122.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+.
T Consensus        93 l~~~~~~~~~~ql~~~L~~lH~~~-ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (320)
T cd05590          93 FDEARARFYAAEITSALMFLHDKG-IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEM  171 (320)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCC
Confidence            456788899999999999999999 99999999999999999999999999875322    1334689999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA----  152 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~----  152 (340)
                      .++.++|||||||++|+|++|+.||.......+.    ..+...  ....+...+.++.+++.+||+.||.+||++    
T Consensus       172 ~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~----~~i~~~--~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~  245 (320)
T cd05590         172 LYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLF----EAILND--EVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLG  245 (320)
T ss_pred             CCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHH----HHHhcC--CCCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCC
Confidence            8999999999999999999999998764322211    111111  112344567889999999999999999998    


Q ss_pred             --HHHHHH
Q 019475          153 --KSLVIS  158 (340)
Q Consensus       153 --~e~l~~  158 (340)
                        .+++.|
T Consensus       246 ~~~~~~~h  253 (320)
T cd05590         246 GEEAILRH  253 (320)
T ss_pred             CHHHHHcC
Confidence              666665

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.96  E-value=9.4e-29  Score=213.60  Aligned_cols=156  Identities=17%  Similarity=0.255  Sum_probs=126.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-------cccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-------YSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~   73 (340)
                      +++.++++++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++........       ..++..|+|||.+
T Consensus        92 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05115          92 ITVSNVVELMHQVSMGMKYLEGKN-FVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECI  170 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC-eeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHH
Confidence            467889999999999999999999 99999999999999999999999999875443211       1224689999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|++++ |..||......     .....+........+...++++.+++.+||..+|++||++
T Consensus       171 ~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~  245 (257)
T cd05115         171 NFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGP-----EVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNF  245 (257)
T ss_pred             ccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHH-----HHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            88889999999999999999996 88777543221     1222222233334556677899999999999999999999


Q ss_pred             HHHHHHHHhh
Q 019475          153 KSLVISLMSL  162 (340)
Q Consensus       153 ~e~l~~l~~~  162 (340)
                      .++.+.|+..
T Consensus       246 ~~i~~~l~~~  255 (257)
T cd05115         246 AKVEERMRTY  255 (257)
T ss_pred             HHHHHHHhhh
Confidence            9999988754

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.96  E-value=3.7e-29  Score=221.73  Aligned_cols=152  Identities=19%  Similarity=0.177  Sum_probs=120.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC-----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-----------------------   57 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-----------------------   57 (340)
                      |+.....-++.+++.||.-+|+.| +|||||||+|+|||..|++||+|||+|.....                       
T Consensus       238 L~e~~arfYiaE~vlAI~~iH~~g-yIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~  316 (550)
T KOG0605|consen  238 LTEDWARFYIAETVLAIESIHQLG-YIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPS  316 (550)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHcC-cccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCc
Confidence            455666778999999999999999 99999999999999999999999999863210                       


Q ss_pred             --------C--------------------CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh
Q 019475           58 --------G--------------------KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI  109 (340)
Q Consensus        58 --------~--------------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~  109 (340)
                              .                    .+.+|||.|+|||++.+.+|+..+|.||||||+|||+.|.+||........
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T  396 (550)
T KOG0605|consen  317 DFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQET  396 (550)
T ss_pred             cccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                    0                    023689999999999999999999999999999999999999988654322


Q ss_pred             hhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCCCC---CHHHHHHH
Q 019475          110 RSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARERP---NAKSLVIS  158 (340)
Q Consensus       110 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~Rp---s~~e~l~~  158 (340)
                          ...++.-.  +..+....++.+.++||.+||. ||++|.   +++||..|
T Consensus       397 ----~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~H  445 (550)
T KOG0605|consen  397 ----YRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKH  445 (550)
T ss_pred             ----HHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcC
Confidence                22222222  2222233556899999999999 999996   57777666

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.96  E-value=3.3e-29  Score=223.69  Aligned_cols=151  Identities=19%  Similarity=0.333  Sum_probs=122.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+.
T Consensus        98 ~~~~~~~~~~~qi~~aL~~LH~~~-ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  176 (323)
T cd05616          98 FKEPHAVFYAAEIAIGLFFLHSKG-IIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQ  176 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEecCCCHHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCC
Confidence            467788999999999999999999 99999999999999999999999999875432    2345689999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA----  152 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~----  152 (340)
                      .++.++|||||||++|||++|+.||........    ...+...  ...++...+.++.+++.+||+.+|.+|++.    
T Consensus       177 ~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~----~~~i~~~--~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~  250 (323)
T cd05616         177 PYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDEL----FQSIMEH--NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEG  250 (323)
T ss_pred             CCCCccchhchhHHHHHHHhCCCCCCCCCHHHH----HHHHHhC--CCCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCC
Confidence            999999999999999999999998876432211    1112111  123455677889999999999999999974    


Q ss_pred             -HHHHHH
Q 019475          153 -KSLVIS  158 (340)
Q Consensus       153 -~e~l~~  158 (340)
                       .++++|
T Consensus       251 ~~~i~~h  257 (323)
T cd05616         251 ERDIKEH  257 (323)
T ss_pred             HHHHhcC
Confidence             666654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.96  E-value=1.3e-28  Score=213.79  Aligned_cols=156  Identities=22%  Similarity=0.292  Sum_probs=126.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.++++++.|++.||.|||+++ ++||||||+||+++.++.++|+|||+++......      ...++..|++||.+.
T Consensus       103 ~~~~~~~~~~~~l~~~l~~Lh~~~-i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~  181 (266)
T cd05033         103 FTVGQLVGMLRGIASGMKYLSEMN-YVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIA  181 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhc
Confidence            578899999999999999999999 9999999999999999999999999998764211      123356799999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++||||||+++|+|++ |..||.......     ....+......+.+...+..+.+++.+||+.+|++||++.
T Consensus       182 ~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~  256 (266)
T cd05033         182 YRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQD-----VIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFS  256 (266)
T ss_pred             cCCCccccchHHHHHHHHHHHccCCCCCCCCCHHH-----HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHH
Confidence            8889999999999999999998 887775432221     1222222222233456678899999999999999999999


Q ss_pred             HHHHHHHhh
Q 019475          154 SLVISLMSL  162 (340)
Q Consensus       154 e~l~~l~~~  162 (340)
                      +++++|..+
T Consensus       257 ei~~~l~~~  265 (266)
T cd05033         257 QIVSTLDKM  265 (266)
T ss_pred             HHHHHHHhh
Confidence            999999765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.96  E-value=5.3e-29  Score=222.43  Aligned_cols=152  Identities=18%  Similarity=0.301  Sum_probs=124.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      |++.++..++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++....    .....|++.|+|||++.+.
T Consensus        98 l~~~~~~~~~~qi~~al~~lH~~~-ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  176 (324)
T cd05589          98 FSEPRAVFYAACVVLGLQYLHENK-IVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTET  176 (324)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCC
Confidence            578889999999999999999999 99999999999999999999999999875332    2345689999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----C
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----N  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s  151 (340)
                      .++.++|||||||++|+|++|+.||.........    ..+...  ....+...+..+.++|.+||..||.+||     +
T Consensus       177 ~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~----~~i~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~  250 (324)
T cd05589         177 SYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVF----DSIVND--EVRYPRFLSREAISIMRRLLRRNPERRLGSGEKD  250 (324)
T ss_pred             CCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHH----HHHHhC--CCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCC
Confidence            9999999999999999999999988654322111    111111  1124455678899999999999999999     6


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|.
T Consensus       251 ~~~l~~~~  258 (324)
T cd05589         251 AEDVKKQP  258 (324)
T ss_pred             HHHHhhCC
Confidence            88887764

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.96  E-value=3.9e-29  Score=222.43  Aligned_cols=151  Identities=20%  Similarity=0.324  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      ++..++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+.
T Consensus        93 ~~~~~~~~~~~qi~~al~~LH~~~-ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (316)
T cd05592          93 FDEARARFYAAEIICGLQFLHKKG-IIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQ  171 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCC
Confidence            456778889999999999999999 99999999999999999999999999875432    2334689999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH-HH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK-SL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~-e~  155 (340)
                      .++.++|||||||++|+|++|..||.........    ..+..  .....+...+.++.+++.+||..+|.+||++. ++
T Consensus       172 ~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~----~~i~~--~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l  245 (316)
T cd05592         172 KYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELF----DSILN--DRPHFPRWISKEAKDCLSKLFERDPTKRLGVDGDI  245 (316)
T ss_pred             CCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHH----HHHHc--CCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHH
Confidence            9999999999999999999999988764322111    11111  12234555678899999999999999999865 66


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      ++|
T Consensus       246 ~~h  248 (316)
T cd05592         246 RQH  248 (316)
T ss_pred             HcC
Confidence            554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=9.1e-29  Score=215.92  Aligned_cols=154  Identities=19%  Similarity=0.293  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      ++|..++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....      ....++..|+|||.+.
T Consensus       116 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  194 (277)
T cd05032         116 PTLQKFIQMAAEIADGMAYLAAKK-FVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLK  194 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHh
Confidence            367788999999999999999999 999999999999999999999999998754332      2234567899999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++||+++ |..||........     ...+........+...+..+.+++.+||..+|++|||+.
T Consensus       195 ~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  269 (277)
T cd05032         195 DGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEV-----LKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFL  269 (277)
T ss_pred             cCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHH-----HHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHH
Confidence            8889999999999999999998 8877755322211     111122222234555678899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      +++..|+
T Consensus       270 ~l~~~l~  276 (277)
T cd05032         270 EIVSSLK  276 (277)
T ss_pred             HHHHHhc
Confidence            9998875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.96  E-value=1.2e-28  Score=215.68  Aligned_cols=158  Identities=16%  Similarity=0.238  Sum_probs=127.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      |++.+++.++.||+.||.|||+++ ++|+||||+||+++.++.+||+|||+++......      ...++..|+|||++.
T Consensus       114 l~~~~~~~i~~~i~~~l~~LH~~~-i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~  192 (280)
T cd05043         114 LSTQQLVHMAIQIACGMSYLHKRG-VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLV  192 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHh
Confidence            468889999999999999999999 9999999999999999999999999998654322      223466799999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|++++ |+.||.......     ....+........+..++..+.+++.+||..+|++|||+.
T Consensus       193 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  267 (280)
T cd05043         193 NKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFE-----MAAYLKDGYRLAQPINCPDELFAVMACCWALDPEERPSFS  267 (280)
T ss_pred             cCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHH-----HHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHH
Confidence            8889999999999999999999 888775532211     1122222222223344567899999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 019475          154 SLVISLMSLQK  164 (340)
Q Consensus       154 e~l~~l~~~~~  164 (340)
                      ++++.|..+.+
T Consensus       268 ~~~~~l~~~~~  278 (280)
T cd05043         268 QLVQCLTDFHA  278 (280)
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.96  E-value=3.6e-29  Score=222.85  Aligned_cols=157  Identities=13%  Similarity=0.233  Sum_probs=115.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE----cCCCCeEEecccCcccCCCC-------CCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF----DKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~----~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~a   69 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||+    +.++.+||+|||+++.....       ....+|+.|+|
T Consensus       105 l~~~~~~~i~~qi~~al~~LH~~~-ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~a  183 (317)
T cd07868         105 LPRGMVKSLLYQILDGIHYLHANW-VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRA  183 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccC
Confidence            356678899999999999999999 9999999999999    45678999999999765422       23467899999


Q ss_pred             ccccccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh-----hhhhhHhhh-----------------------c
Q 019475           70 PEYMRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR-----SKNFLLLMD-----------------------S  120 (340)
Q Consensus        70 PE~~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~-----~~~~~~~~~-----------------------~  120 (340)
                      ||++.+. .++.++||||+||++|+|++|++||.........     ......++.                       .
T Consensus       184 PE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (317)
T cd07868         184 PELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMK  263 (317)
T ss_pred             CHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhh
Confidence            9999764 5889999999999999999999888532110000     000000000                       0


Q ss_pred             cccC-------------CCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          121 ALEG-------------HFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       121 ~~~~-------------~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ....             ......+..+.+||.+||+.||.+|||++|+++|
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~h  314 (317)
T cd07868         264 DFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQD  314 (317)
T ss_pred             hhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            0000             0001123467899999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.96  E-value=2.6e-29  Score=225.48  Aligned_cols=152  Identities=18%  Similarity=0.230  Sum_probs=124.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+|||++.++++||+|||++...... ....||+.|+|||++.+..++
T Consensus       128 ~~~~~~~~~~~qi~~aL~~LH~~~-ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~  206 (340)
T PTZ00426        128 FPNDVGCFYAAQIVLIFEYLQSLN-IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHG  206 (340)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEccCCCHHHEEECCCCCEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCCC
Confidence            466788899999999999999999 999999999999999999999999999865433 345789999999999988899


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NAKS  154 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~~e  154 (340)
                      .++|||||||++|||++|..||........    ...+....  ..++...+..+.++|.+||+.+|.+|+     ++.+
T Consensus       207 ~~~DiwSlGvil~ell~G~~Pf~~~~~~~~----~~~i~~~~--~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~  280 (340)
T PTZ00426        207 KAADWWTLGIFIYEILVGCPPFYANEPLLI----YQKILEGI--IYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQN  280 (340)
T ss_pred             ccccccchhhHHHHHhcCCCCCCCCCHHHH----HHHHhcCC--CCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHH
Confidence            999999999999999999998876432211    11111111  123555677899999999999999995     8999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      +++|.
T Consensus       281 ~~~hp  285 (340)
T PTZ00426        281 VKEHP  285 (340)
T ss_pred             HHcCC
Confidence            98874

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=2.8e-29  Score=222.28  Aligned_cols=153  Identities=20%  Similarity=0.217  Sum_probs=132.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++.++.++|+.|++.|+.|||++. |+|||||+.||+++.++.|+|+|||+++...+.    .+.+||+.|++||.+.+.
T Consensus       103 f~E~~i~~~~~Q~~~av~ylH~~~-iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~  181 (426)
T KOG0589|consen  103 FPEERILKWFVQILLAVNYLHENR-VLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDI  181 (426)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhh-hhcccchhhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCC
Confidence            466789999999999999999988 999999999999999999999999999987765    467899999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      +|+.++|||||||++|||++-+++|..............     ....+.|...+.++..+|..||..+|+.||++.+++
T Consensus       182 pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~-----~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL  256 (426)
T KOG0589|consen  182 PYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINR-----GLYSPLPSMYSSELRSLVKSMLRKNPEHRPSALELL  256 (426)
T ss_pred             CCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhh-----ccCCCCCccccHHHHHHHHHHhhcCCccCCCHHHHh
Confidence            999999999999999999999988876544433332222     223455677889999999999999999999999999


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      .+.
T Consensus       257 ~~P  259 (426)
T KOG0589|consen  257 RRP  259 (426)
T ss_pred             hCh
Confidence            863

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.96  E-value=3.7e-29  Score=227.08  Aligned_cols=160  Identities=18%  Similarity=0.252  Sum_probs=122.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC--CeEEecccCcccCCCC-CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG--NPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~   77 (340)
                      |+......|+.||+.||.+||+.+ |||+||||+||||..-+  .|||+|||.+...... -+++.+..|+|||++.|.+
T Consensus       286 lsl~~ir~~~~Qil~~L~~L~~l~-IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVILGlp  364 (586)
T KOG0667|consen  286 LSLPLVRKFAQQILTALLFLHELG-IIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVILGLP  364 (586)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeccCChhheeeccCCcCceeEEecccccccCCcceeeeeccccccchhhccCC
Confidence            467788899999999999999999 99999999999997544  6999999999876654 3567788999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHH--------------------------hhh-hhhh---------------
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDL--------------------------IRS-KNFL---------------  115 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~--------------------------~~~-~~~~---------------  115 (340)
                      |+.+.||||||||+.||++|.+.|++...-.                          ... ....               
T Consensus       365 Y~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~  444 (586)
T KOG0667|consen  365 YDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSP  444 (586)
T ss_pred             CCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccch
Confidence            9999999999999999999999888752100                          000 0000               


Q ss_pred             ---H-----hhhcccc-C------CCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475          116 ---L-----LMDSALE-G------HFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus       116 ---~-----~~~~~~~-~------~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                         .     ..+.... .      .........+.+|+.+||..||.+|+|+.+.++|.+-
T Consensus       445 ~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl  505 (586)
T KOG0667|consen  445 EVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFL  505 (586)
T ss_pred             hhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCccc
Confidence               0     0000000 0      0111234678999999999999999999999998643

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.96  E-value=1.5e-28  Score=212.62  Aligned_cols=155  Identities=24%  Similarity=0.325  Sum_probs=125.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||.+.......     ...++..|+|||.+.+
T Consensus        99 ~~~~~~~~~~~~l~~al~~lH~~~-i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  177 (260)
T cd05070          99 LKLPNLVDMAAQVAAGMAYIERMN-YIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY  177 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhc
Confidence            467889999999999999999999 9999999999999999999999999987654321     1234567999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |..||......     .....+......+.+...+..+.+|+.+||..+|.+|||+.+
T Consensus       178 ~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~  252 (260)
T cd05070         178 GRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR-----EVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEY  252 (260)
T ss_pred             CCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHH-----HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHH
Confidence            889999999999999999999 77777553221     112222222233345566788999999999999999999999


Q ss_pred             HHHHHHh
Q 019475          155 LVISLMS  161 (340)
Q Consensus       155 ~l~~l~~  161 (340)
                      +.+.|+.
T Consensus       253 l~~~l~~  259 (260)
T cd05070         253 LQSFLED  259 (260)
T ss_pred             HHHHHhc
Confidence            9988764

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.96  E-value=4.5e-29  Score=222.90  Aligned_cols=151  Identities=19%  Similarity=0.329  Sum_probs=122.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||++.....    .....||+.|+|||++.+.
T Consensus        98 ~~~~~~~~~~~qi~~al~~lH~~~-ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  176 (324)
T cd05587          98 FKEPHAVFYAAEIAIGLFFLHSKG-IIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQ  176 (324)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCC
Confidence            467788999999999999999999 99999999999999999999999999875321    1234689999999999998


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA----  152 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~----  152 (340)
                      .++.++|||||||++|+|++|+.||........    ...+..  ....++...+..+.+++.+||..+|.+|++.    
T Consensus       177 ~~~~~~DiwslGvil~elltG~~pf~~~~~~~~----~~~i~~--~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~  250 (324)
T cd05587         177 PYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDEL----FQSIME--HNVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTG  250 (324)
T ss_pred             CCCcccchhhhHHHHHHHHhCCCCCCCCCHHHH----HHHHHc--CCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCC
Confidence            999999999999999999999998865432211    111111  1223455667889999999999999999976    


Q ss_pred             -HHHHHH
Q 019475          153 -KSLVIS  158 (340)
Q Consensus       153 -~e~l~~  158 (340)
                       .++++|
T Consensus       251 ~~~~~~h  257 (324)
T cd05587         251 ERDIREH  257 (324)
T ss_pred             HHHHhcC
Confidence             667665

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.96  E-value=4.2e-29  Score=222.79  Aligned_cols=152  Identities=16%  Similarity=0.277  Sum_probs=123.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||++......    ....||+.|+|||++.+.
T Consensus        93 ~~~~~~~~~~~qi~~aL~~LH~~~-ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (321)
T cd05591          93 FDEPRSRFYAAEVTLALMFLHRHG-VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQEL  171 (321)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHHHeEECCCCCEEEeecccceecccCCccccccccCccccCHHHHcCC
Confidence            467788899999999999999999 999999999999999999999999998753321    234689999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC------
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP------  150 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp------  150 (340)
                      .++.++|||||||++|+|++|+.||........    ...+....  ...+...+.++.+++.+||..||++||      
T Consensus       172 ~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~----~~~i~~~~--~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~  245 (321)
T cd05591         172 EYGPSVDWWALGVLMYEMMAGQPPFEADNEDDL----FESILHDD--VLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQ  245 (321)
T ss_pred             CCCCccceechhHHHHHHhcCCCCCCCCCHHHH----HHHHHcCC--CCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCC
Confidence            999999999999999999999998876432211    11111111  123445678899999999999999999      


Q ss_pred             -CHHHHHHHH
Q 019475          151 -NAKSLVISL  159 (340)
Q Consensus       151 -s~~e~l~~l  159 (340)
                       ++.++++|.
T Consensus       246 ~~~~~~~~hp  255 (321)
T cd05591         246 GGEDAIKQHP  255 (321)
T ss_pred             CCHHHHhcCC
Confidence             888898774

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=5.5e-29  Score=227.83  Aligned_cols=159  Identities=16%  Similarity=0.242  Sum_probs=122.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.++|+|||+++.....      ....||+.|+|||++.
T Consensus       182 l~~~~~~~i~~ql~~aL~~LH~~g-ivHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~  260 (392)
T PHA03207        182 LPLEQAITIQRRLLEALAYLHGRG-IIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLA  260 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhc
Confidence            578899999999999999999999 999999999999999999999999998765432      1346899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh--hhhhhH-------------------h---hhccccCCC--C-
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR--SKNFLL-------------------L---MDSALEGHF--S-  127 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~--~~~~~~-------------------~---~~~~~~~~~--~-  127 (340)
                      +..++.++|||||||++|||++|+.||.+.......  ...+..                   .   ........+  + 
T Consensus       261 ~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (392)
T PHA03207        261 LDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPP  340 (392)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccc
Confidence            889999999999999999999999988654211000  000000                   0   000000000  1 


Q ss_pred             ----chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          128 ----NDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       128 ----~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                          ...+.++.++|.+||..||++|||+.+++.|..
T Consensus       341 ~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~  377 (392)
T PHA03207        341 VIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLPL  377 (392)
T ss_pred             hhhccCcchhHHHHHHHHhccChhhCCCHHHHhhCch
Confidence                123567889999999999999999999998843

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.96  E-value=1.3e-28  Score=213.72  Aligned_cols=159  Identities=14%  Similarity=0.212  Sum_probs=126.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++...++.++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||.+......    ....+++.|+|||.+.+.
T Consensus       103 ~~~~~~~~~~~~i~~~l~~LH~~~-i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  181 (267)
T cd08228         103 IPERTVWKYFVQLCSAVEHMHSRR-VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN  181 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-eeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhccC
Confidence            356778899999999999999999 999999999999999999999999998765432    234678899999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|+||||+++|+|++|+.||.........   ....+.. ......+...+..+.+++.+||..+|++||++.++
T Consensus       182 ~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~v  258 (267)
T cd08228         182 GYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFS---LCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYV  258 (267)
T ss_pred             CCCchhhHHHHHHHHHHHhcCCCCCccccccHHH---HHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHH
Confidence            8999999999999999999999887654322111   1111111 11112223456789999999999999999999999


Q ss_pred             HHHHHhhh
Q 019475          156 VISLMSLQ  163 (340)
Q Consensus       156 l~~l~~~~  163 (340)
                      ++.+.++.
T Consensus       259 l~~~~~~~  266 (267)
T cd08228         259 HQIAKQMH  266 (267)
T ss_pred             HHHHHHhc
Confidence            99988753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.2e-29  Score=226.25  Aligned_cols=153  Identities=22%  Similarity=0.248  Sum_probs=123.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---------------------   59 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---------------------   59 (340)
                      +++.++..++.||+.||.|||++| ++||||||+|||++.++.+||+|||++.......                     
T Consensus        98 l~~~~~~~i~~qi~~aL~~LH~~g-iiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (350)
T cd05573          98 FPEETARFYIAELVLALDSVHKLG-FIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVR  176 (350)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccccccccccccccccccc
Confidence            467788999999999999999999 9999999999999999999999999987654322                     


Q ss_pred             ------------CcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh--ccccCC
Q 019475           60 ------------SYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD--SALEGH  125 (340)
Q Consensus        60 ------------~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  125 (340)
                                  ...||+.|+|||++.+..++.++|||||||++|+|++|+.||........    ...+..  .....+
T Consensus       177 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~----~~~i~~~~~~~~~p  252 (350)
T cd05573         177 RRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQET----YNKIINWKESLRFP  252 (350)
T ss_pred             ccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHH----HHHHhccCCcccCC
Confidence                        34678999999999999999999999999999999999998876532211    111211  111111


Q ss_pred             CCchhHHHHHHHHHHhcccCCCCCCC-HHHHHHHH
Q 019475          126 FSNDEGTELVRLASRCLQSEARERPN-AKSLVISL  159 (340)
Q Consensus       126 ~~~~~~~~~~~li~~cl~~~p~~Rps-~~e~l~~l  159 (340)
                      .....++++.+||.+||. +|.+||+ +.++++|.
T Consensus       253 ~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp  286 (350)
T cd05573         253 PDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHP  286 (350)
T ss_pred             CCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCC
Confidence            122357889999999997 9999999 99999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=2.2e-28  Score=211.78  Aligned_cols=155  Identities=21%  Similarity=0.336  Sum_probs=124.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC--Cccc---CCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK--SYST---NLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~---~~~y~aPE~~~~   75 (340)
                      +++.++..++.|++.||.+||+++ ++||||||+||+++.++.++|+|||+++......  ...+   +..|+|||++.+
T Consensus       100 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  178 (261)
T cd05068         100 LKLPQLIDMAAQVASGMAYLEAQN-YIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALY  178 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCcccccc
Confidence            468899999999999999999999 9999999999999999999999999988655321  1122   357999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |+.||.......     ....+........+...+..+.+++.+||..+|.+||++.+
T Consensus       179 ~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~  253 (261)
T cd05068         179 NRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAE-----VLQQVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFET  253 (261)
T ss_pred             CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH-----HHHHHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHH
Confidence            889999999999999999999 887775532211     11112222222334456788999999999999999999999


Q ss_pred             HHHHHHh
Q 019475          155 LVISLMS  161 (340)
Q Consensus       155 ~l~~l~~  161 (340)
                      +++.|+.
T Consensus       254 l~~~l~~  260 (261)
T cd05068         254 LQWKLED  260 (261)
T ss_pred             HHHHHhc
Confidence            9998875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.5e-28  Score=212.19  Aligned_cols=156  Identities=20%  Similarity=0.298  Sum_probs=125.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCc-------ccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY-------STNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~~y~aPE~~   73 (340)
                      +++..++.++.|++.||.|||..+ ++|+||||+||+++.++.+||+|||.++........       .++..|+|||.+
T Consensus        92 ~~~~~~~~~~~qi~~~l~~lh~~~-i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05060          92 IPVSDLKELAHQVAMGMAYLESKH-FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECI  170 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcC-eeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHh
Confidence            468889999999999999999999 999999999999999999999999998865433221       124579999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|++++ |..||.....     ......+........+...+..+.+++.+||..+|++||++
T Consensus       171 ~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~  245 (257)
T cd05060         171 NYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG-----AEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTF  245 (257)
T ss_pred             cCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH-----HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCH
Confidence            98889999999999999999998 8877654321     11222222222223455667889999999999999999999


Q ss_pred             HHHHHHHHhh
Q 019475          153 KSLVISLMSL  162 (340)
Q Consensus       153 ~e~l~~l~~~  162 (340)
                      .++++.|+..
T Consensus       246 ~~l~~~l~~~  255 (257)
T cd05060         246 SELESTFRRD  255 (257)
T ss_pred             HHHHHHHHhc
Confidence            9999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.96  E-value=1.8e-28  Score=216.94  Aligned_cols=159  Identities=16%  Similarity=0.253  Sum_probs=126.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++..++.++.|++.||.|||+++ ++|+||||+||+++.++.+||+|||+++......      ...++..|++||.+.
T Consensus       106 ~~~~~~~~~~~qi~~~L~~LH~~~-ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (303)
T cd05110         106 IGSQLLLNWCVQIAKGMMYLEERR-LVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIH  184 (303)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcC-eeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhc
Confidence            467788999999999999999999 9999999999999999999999999998654321      123466899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||.......     ....+........+..++..+.+++.+||..+|++||++.
T Consensus       185 ~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~  259 (303)
T cd05110         185 YRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTRE-----IPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFK  259 (303)
T ss_pred             cCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            8889999999999999999997 777775532221     1222222222222344567899999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ++++.|..+...
T Consensus       260 ~l~~~l~~~~~~  271 (303)
T cd05110         260 ELAAEFSRMARD  271 (303)
T ss_pred             HHHHHHHHHHhc
Confidence            999999887554

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.96  E-value=1.8e-28  Score=212.26  Aligned_cols=156  Identities=20%  Similarity=0.258  Sum_probs=121.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCcccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~   73 (340)
                      ++..++.++.||+.||.|||+.+ ++||||||+|||++.++.+||+|||+++.....        ....++..|+|||.+
T Consensus        96 ~~~~~~~~~~~i~~~l~~lH~~~-i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  174 (262)
T cd05058          96 TVKDLIGFGLQVAKGMEYLASKK-FVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESL  174 (262)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-ccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHh
Confidence            46678899999999999999999 999999999999999999999999998754321        122346689999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCC-CCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGK-HIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|||++|. +|+......     .....+........+...+..+.+++.+||..+|++||++
T Consensus       175 ~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~  249 (262)
T cd05058         175 QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSF-----DITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTF  249 (262)
T ss_pred             ccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHH-----HHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCH
Confidence            8888999999999999999999965 444332111     1111111111112233456789999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 019475          153 KSLVISLMSLQ  163 (340)
Q Consensus       153 ~e~l~~l~~~~  163 (340)
                      .+++..|+.+.
T Consensus       250 ~~il~~l~~~~  260 (262)
T cd05058         250 SELVSRIEQIF  260 (262)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.96  E-value=2.3e-28  Score=198.93  Aligned_cols=155  Identities=17%  Similarity=0.109  Sum_probs=118.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccccCCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTP   80 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~   80 (340)
                      |++.+++.|+.||+.||.|||+++       ||+|||++.++.+|+  ||++....... ..||+.|+|||++.+..++.
T Consensus        14 l~~~~~~~i~~qi~~~L~~lH~~~-------kp~Nil~~~~~~~~~--fG~~~~~~~~~-~~g~~~y~aPE~~~~~~~~~   83 (176)
T smart00750       14 LNEEEIWAVCLQCLRALRELHRQA-------KSGNILLTWDGLLKL--DGSVAFKTPEQ-SRVDPYFMAPEVIQGQSYTE   83 (176)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC-------CcccEeEcCccceee--ccceEeecccc-CCCcccccChHHhcCCCCcc
Confidence            588999999999999999999997       999999999999999  99988665433 36789999999999999999


Q ss_pred             ccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC--CCCchhHH--HHHHHHHHhcccCCCCCCCHHHHH
Q 019475           81 ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG--HFSNDEGT--ELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        81 ~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      ++|||||||++|||++|+.||.......................  ..+.....  .+.+++.+||..+|.+||++.+++
T Consensus        84 ~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll  163 (176)
T smart00750       84 KADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYL  163 (176)
T ss_pred             hhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHH
Confidence            99999999999999999988754321100001111111111000  11222333  699999999999999999999999


Q ss_pred             HHHHhhhhh
Q 019475          157 ISLMSLQKE  165 (340)
Q Consensus       157 ~~l~~~~~~  165 (340)
                      +|+......
T Consensus       164 ~~~~~~~~~  172 (176)
T smart00750      164 AHCRALFAE  172 (176)
T ss_pred             HHHHHHHHH
Confidence            998876543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.96  E-value=7.8e-29  Score=216.47  Aligned_cols=156  Identities=15%  Similarity=0.241  Sum_probs=120.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---CcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..++.++.||+.||+|||+.+ ++||||||+||+++.++.++|+|||++.......   ...++..|+|||++.+..
T Consensus        92 ~~~~~~~~~~~qi~~al~~lH~~~-ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  170 (277)
T cd05607          92 LEMERVIHYSAQITCGILHLHSMD-IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEP  170 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCC
Confidence            356788899999999999999999 9999999999999999999999999987654432   346788999999999888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++|||||||++|+|++|..||...................... ......+.++.+|+.+||+.+|.+||++.|+++
T Consensus       171 ~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~  249 (277)
T cd05607         171 YSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVK-FEHQNFTEESKDICRLFLAKKPEDRLGSREKND  249 (277)
T ss_pred             CCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccccc-cccccCCHHHHHHHHHHhccCHhhCCCCccchh
Confidence            9999999999999999999998876532211111111111111111 112245678999999999999999999966554


Q ss_pred             H
Q 019475          158 S  158 (340)
Q Consensus       158 ~  158 (340)
                      .
T Consensus       250 ~  250 (277)
T cd05607         250 D  250 (277)
T ss_pred             h
Confidence            3

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.96  E-value=2.9e-29  Score=224.47  Aligned_cols=156  Identities=13%  Similarity=0.246  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++....    .....||+.|+|||++.+.
T Consensus        93 l~~~~~~~i~~qi~~~l~~lH~~~-ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (329)
T cd05618          93 LPEEHARFYSAEISLALNYLHERG-IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGE  171 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCC
Confidence            467788899999999999999999 99999999999999999999999999875322    2345689999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHh----hhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI----RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-  151 (340)
                      .++.++|||||||++|+|++|..||........    ........+. ......|...+..+.++|.+||..||.+||+ 
T Consensus       172 ~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~-~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         172 DYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL-EKQIRIPRSLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             CCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHh-cCCCCCCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence            999999999999999999999998843111000    0001111111 1112345566788999999999999999998 


Q ss_pred             -----HHHHHHH
Q 019475          152 -----AKSLVIS  158 (340)
Q Consensus       152 -----~~e~l~~  158 (340)
                           +.++++|
T Consensus       251 ~~~~~~~~i~~h  262 (329)
T cd05618         251 HPQTGFADIQGH  262 (329)
T ss_pred             CCCCCHHHHhcC
Confidence                 5677766

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.96  E-value=2.5e-29  Score=217.43  Aligned_cols=153  Identities=25%  Similarity=0.458  Sum_probs=120.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.++++|+.||+.||.|||+++ ++|++|+++||+++.++.+||+|||++......      ........|+|||.+.
T Consensus       100 ~~~~~~~~i~~~i~~~l~~Lh~~~-iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  178 (259)
T PF07714_consen  100 LSEQQRLSIAIQIAEALSYLHSNN-IIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLK  178 (259)
T ss_dssp             SBHHHHHHHHHHHHHHHHHHHHTT-EEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHH
T ss_pred             cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            578899999999999999999999 999999999999999999999999999876322      2234567899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++||||||+++||+++ |+.|+....     ...+...+........+..++..+.++|.+||..+|.+|||+.
T Consensus       179 ~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~  253 (259)
T PF07714_consen  179 DGEYTKKSDVYSFGMLLYEILTLGKFPFSDYD-----NEEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQ  253 (259)
T ss_dssp             HSEESHHHHHHHHHHHHHHHHTTSSGTTTTSC-----HHHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HH
T ss_pred             cccccccccccccccccccccccccccccccc-----cccccccccccccceeccchhHHHHHHHHHHcCCChhhCcCHH
Confidence            8889999999999999999999 566664432     1222222233333344556788899999999999999999999


Q ss_pred             HHHHHH
Q 019475          154 SLVISL  159 (340)
Q Consensus       154 e~l~~l  159 (340)
                      ++++.|
T Consensus       254 ~i~~~L  259 (259)
T PF07714_consen  254 EILQEL  259 (259)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=8.8e-29  Score=222.80  Aligned_cols=157  Identities=18%  Similarity=0.261  Sum_probs=120.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~   78 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++..... ....+|+.|+|||++.+ ..+
T Consensus       115 l~~~~~~~i~~qi~~aL~~LH~~~-ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  193 (343)
T cd07878         115 LSDEHVQFLIYQLLRGLKYIHSAG-IIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHY  193 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecccCChhhEEECCCCCEEEcCCccceecCCCcCCccccccccCchHhcCCccC
Confidence            467888999999999999999999 999999999999999999999999999865543 34578999999999876 468


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhh-------------------hhhHhhhccccCC-------CCchhHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK-------------------NFLLLMDSALEGH-------FSNDEGT  132 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~-------~~~~~~~  132 (340)
                      +.++|||||||++|+|++|+.||........-..                   ....... .+...       .....++
T Consensus       194 ~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  272 (343)
T cd07878         194 NQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQ-SLPHMPQQDLKKIFRGANP  272 (343)
T ss_pred             CchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhh-ccccccchhHHHhccCCCH
Confidence            8999999999999999999998865321110000                   0000000 00000       0012345


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      .+.+|+.+||..||.+|||+.++++|-
T Consensus       273 ~~~~li~~mL~~dp~~R~s~~ell~hp  299 (343)
T cd07878         273 LAIDLLEKMLVLDSDKRISASEALAHP  299 (343)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHhcCc
Confidence            678999999999999999999999874

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.96  E-value=2e-28  Score=211.55  Aligned_cols=153  Identities=26%  Similarity=0.376  Sum_probs=125.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.|++.||.|||+++ ++|+||+|+||+++.++.++|+|||.+......      ....++..|+|||.+.
T Consensus       102 ~~~~~~~~~~~~l~~al~~lH~~~-i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  180 (262)
T cd00192         102 LSLKDLLSFAIQIAKGMEYLASKK-FVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLK  180 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCC-cccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhc
Confidence            478899999999999999999999 999999999999999999999999999876543      2335678899999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......     .....+........+...+.++.+++.+||..+|.+|||+.
T Consensus       181 ~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  255 (262)
T cd00192         181 DGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNE-----EVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFS  255 (262)
T ss_pred             cCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHH-----HHHHHHHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHH
Confidence            8889999999999999999999 57777654221     11222222223334556678999999999999999999999


Q ss_pred             HHHHHH
Q 019475          154 SLVISL  159 (340)
Q Consensus       154 e~l~~l  159 (340)
                      +++.+|
T Consensus       256 ~l~~~l  261 (262)
T cd00192         256 ELVERL  261 (262)
T ss_pred             HHHHhh
Confidence            999886

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.96  E-value=5.2e-29  Score=221.86  Aligned_cols=151  Identities=16%  Similarity=0.284  Sum_probs=123.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++....    .....+++.|+|||++.+.
T Consensus        93 l~~~~~~~~~~qi~~~l~~LH~~~-ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  171 (318)
T cd05570          93 FDEPRARFYAAEIVLGLQFLHERG-IIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQ  171 (318)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCC
Confidence            578889999999999999999999 99999999999999999999999999865322    1234678999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA----  152 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~----  152 (340)
                      .++.++|||||||++|+|++|+.||.........    ..+...  ....+...+..+.+||.+||..||.+|||+    
T Consensus       172 ~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~----~~i~~~--~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~  245 (318)
T cd05570         172 PYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELF----QSILED--EVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTG  245 (318)
T ss_pred             CCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHH----HHHHcC--CCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCC
Confidence            9999999999999999999999988654322111    111111  122345567889999999999999999999    


Q ss_pred             -HHHHHH
Q 019475          153 -KSLVIS  158 (340)
Q Consensus       153 -~e~l~~  158 (340)
                       .+++.|
T Consensus       246 ~~~ll~~  252 (318)
T cd05570         246 EQDIKGH  252 (318)
T ss_pred             HHHHhcC
Confidence             888876

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.96  E-value=2.3e-28  Score=211.56  Aligned_cols=155  Identities=23%  Similarity=0.322  Sum_probs=124.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++..++.++.|++.||.|||+.+ ++|+||||+||+++.++.++|+|||.+.......     ...++..|++||...+
T Consensus        99 ~~~~~~~~~~~~l~~al~~lH~~~-i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~  177 (260)
T cd05069          99 LKLPQLVDMAAQIADGMAYIERMN-YIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY  177 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhcc
Confidence            467889999999999999999999 9999999999999999999999999987653321     2234677999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |..||........     ............+...+..+.+++.+||..+|++||++++
T Consensus       178 ~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  252 (260)
T cd05069         178 GRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREV-----LEQVERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEY  252 (260)
T ss_pred             CCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH-----HHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHH
Confidence            889999999999999999999 7877765422211     1111122222334556788999999999999999999999


Q ss_pred             HHHHHHh
Q 019475          155 LVISLMS  161 (340)
Q Consensus       155 ~l~~l~~  161 (340)
                      +++.|+.
T Consensus       253 i~~~l~~  259 (260)
T cd05069         253 IQSFLED  259 (260)
T ss_pred             HHHHHhc
Confidence            9998764

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.96  E-value=3.5e-29  Score=224.03  Aligned_cols=156  Identities=13%  Similarity=0.282  Sum_probs=122.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+.
T Consensus        93 l~~~~~~~~~~qi~~~l~~lH~~~-ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (329)
T cd05588          93 LPEEHARFYSAEISLALNFLHERG-IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGE  171 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCccccCHHHHcCC
Confidence            467889999999999999999999 99999999999999999999999999874221    2345689999999999998


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHH-----hhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDL-----IRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .++.++|||||||++|+|++|+.||.......     ........+...  ....|...+..+.++|.+||..||.+|++
T Consensus       172 ~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~  249 (329)
T cd05588         172 DYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEK--QIRIPRSLSVKASSVLKGFLNKDPKERLG  249 (329)
T ss_pred             CCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHhccCHHHcCC
Confidence            99999999999999999999999885321110     000011111111  12345566788999999999999999987


Q ss_pred             ------HHHHHHHH
Q 019475          152 ------AKSLVISL  159 (340)
Q Consensus       152 ------~~e~l~~l  159 (340)
                            +.++++|-
T Consensus       250 ~~~~~~~~~i~~hp  263 (329)
T cd05588         250 CHPQTGFRDIKSHP  263 (329)
T ss_pred             CCCCCCHHHHhcCC
Confidence                  67887763

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.3e-29  Score=225.25  Aligned_cols=149  Identities=21%  Similarity=0.299  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE-cCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCCCcc
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILF-DKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVTPES   82 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~-~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~   82 (340)
                      ++..|+.+|+.++.|||++| +|||||||+|||+ +..|+++|+|||.++..... .+..-|..|.|||++....++.++
T Consensus       416 e~~~w~~~lv~Av~~LH~~g-vvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~ac  494 (612)
T KOG0603|consen  416 EASQWAAELVSAVDYLHEQG-VVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEAC  494 (612)
T ss_pred             HHHHHHHHHHHHHHHHHhcC-eeecCCChhheeecCCCCcEEEEEechhhhCchhhcccchhhcccChhhhccCCCCcch
Confidence            45579999999999999999 9999999999999 68999999999999887665 233558899999999999999999


Q ss_pred             chhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475           83 VVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus        83 Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                      |+||||+++|+|++|+.||.....+       .++......+.+....+.+.++|+.+||+.||.+||++.++..|-+.
T Consensus       495 D~WSLGvlLy~ML~G~tp~~~~P~~-------~ei~~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~  566 (612)
T KOG0603|consen  495 DWWSLGVLLYEMLTGRTLFAAHPAG-------IEIHTRIQMPKFSECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWF  566 (612)
T ss_pred             hhHHHHHHHHHHHhCCCccccCCch-------HHHHHhhcCCccccccCHHHHHHHHHhccCChhhCcChhhhccCcch
Confidence            9999999999999999988654322       22222222333446778899999999999999999999999988655

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=6.5e-29  Score=222.74  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.++..++.||+.||.|||+++ ++||||||+|||++.++.+||+|||++...... ....||+.|+|||++.+..++
T Consensus        98 l~~~~~~~~~~qi~~~l~~lH~~~-ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~  176 (333)
T cd05600          98 LSEDHARFYMAEMFEAVDALHELG-YIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYD  176 (333)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCCHHHEEECCCCCEEEEeCcCCcccccccCCcccCccccChhHhcCCCCC
Confidence            466788899999999999999999 999999999999999999999999998865443 445789999999999988999


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC-C---CchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH-F---SNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++|||||||++|||++|..||........... +.. ........ .   ....+.++.+||.+||..+|.+||++.++
T Consensus       177 ~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~-i~~-~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~l  254 (333)
T cd05600         177 FTVDYWSLGCMLYEFLCGFPPFSGSTPNETWEN-LKY-WKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDI  254 (333)
T ss_pred             CccceecchHHHhhhhhCCCCCCCCCHHHHHHH-HHh-ccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHH
Confidence            999999999999999999998865432211110 000 00011111 1   12446789999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      ++|.
T Consensus       255 l~h~  258 (333)
T cd05600         255 KNHP  258 (333)
T ss_pred             HhCc
Confidence            9874

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.96  E-value=6.4e-29  Score=221.02  Aligned_cols=151  Identities=19%  Similarity=0.283  Sum_probs=121.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+.
T Consensus        93 ~~~~~~~~~~~qi~~al~~LH~~~-ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (316)
T cd05619          93 FDLPRATFYAAEIICGLQFLHSKG-IVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQ  171 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCC
Confidence            467788999999999999999999 99999999999999999999999999875322    1334689999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH-HH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK-SL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~-e~  155 (340)
                      .++.++|||||||++|+|++|..||........     ...+.. .....+...+.++.+++.+||..+|.+||++. ++
T Consensus       172 ~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~-----~~~i~~-~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l  245 (316)
T cd05619         172 KYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEEL-----FQSIRM-DNPCYPRWLTREAKDILVKLFVREPERRLGVKGDI  245 (316)
T ss_pred             CCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHH-----HHHHHh-CCCCCCccCCHHHHHHHHHHhccCHhhcCCChHHH
Confidence            999999999999999999999998865432211     111111 11123445667899999999999999999996 67


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      ++|
T Consensus       246 ~~h  248 (316)
T cd05619         246 RQH  248 (316)
T ss_pred             HcC
Confidence            655

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.96  E-value=2e-28  Score=216.54  Aligned_cols=157  Identities=20%  Similarity=0.350  Sum_probs=126.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++|+||||+||+++.++.++++|||+++......      ...++..|+|||.+.
T Consensus       138 l~~~~~~~i~~~i~~~l~~lH~~~-ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  216 (302)
T cd05055         138 LTLEDLLSFSYQVAKGMAFLASKN-CIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIF  216 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhc
Confidence            478899999999999999999999 9999999999999999999999999987654322      223467899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......    ..+............+...+..+.+++.+||..+|++|||+.
T Consensus       217 ~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~  292 (302)
T cd05055         217 NCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVD----SKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFK  292 (302)
T ss_pred             cCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCch----HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence            8889999999999999999998 88777553221    112222222222223344567899999999999999999999


Q ss_pred             HHHHHHHhh
Q 019475          154 SLVISLMSL  162 (340)
Q Consensus       154 e~l~~l~~~  162 (340)
                      ++++.|..+
T Consensus       293 ell~~l~~~  301 (302)
T cd05055         293 QIVQLIGKQ  301 (302)
T ss_pred             HHHHHHHhh
Confidence            999998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.96  E-value=2.2e-28  Score=211.88  Aligned_cols=151  Identities=19%  Similarity=0.320  Sum_probs=119.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC-------eEEecccCcccCCCCCCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN-------PRLSSFGLMKNSRDGKSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~-------~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~   73 (340)
                      +++..+++++.||+.||+|||+++ ++||||||+|||++.++.       ++++|||++..........++..|+|||.+
T Consensus       102 ~~~~~~~~i~~qi~~~l~~lH~~~-ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~  180 (262)
T cd05077         102 LTTPWKFKVAKQLASALSYLEDKD-LVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERIPWIAPECV  180 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhCC-eECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCcccccccccccChhhh
Confidence            467889999999999999999999 999999999999987664       899999998876655566788899999988


Q ss_pred             c-cCCCCCccchhhHHHHHHHHH-hCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 R-TGRVTPESVVYSFGTMLLDLL-SGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~-~~~~~~~~Di~slG~~~~el~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      . +..++.++|||||||++|+|+ +|..|+........     ........  ......+.++.+||.+||+.||.+||+
T Consensus       181 ~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rp~  253 (262)
T cd05077         181 EDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEK-----ERFYEGQC--MLVTPSCKELADLMTHCMNYDPNQRPF  253 (262)
T ss_pred             cCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHH-----HHHHhcCc--cCCCCChHHHHHHHHHHcCCChhhCcC
Confidence            7 466889999999999999998 46666544321111     11111111  112234567999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++++
T Consensus       254 ~~~il~~~  261 (262)
T cd05077         254 FRAIMRDI  261 (262)
T ss_pred             HHHHHHhc
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=8.9e-29  Score=220.83  Aligned_cols=151  Identities=19%  Similarity=0.265  Sum_probs=122.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~   77 (340)
                      ++..+..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....    ....|++.|+|||++.+..
T Consensus        98 ~~~~~~~~~~qi~~~l~~lH~~~-ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  176 (323)
T cd05584          98 MEDTACFYLSEISLALEHLHQQG-IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSG  176 (323)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCC
Confidence            45677889999999999999999 999999999999999999999999998753222    2346899999999999888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NA  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~  152 (340)
                      ++.++|||||||++|||++|+.||.......    ....+...  ....+...+..+.++|.+||..+|++||     ++
T Consensus       177 ~~~~~DiwslG~il~ell~G~~pf~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  250 (323)
T cd05584         177 HGKAVDWWSLGALMYDMLTGAPPFTAENRKK----TIDKILKG--KLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDA  250 (323)
T ss_pred             CCCcceecccHHHHHHHhcCCCCCCCCCHHH----HHHHHHcC--CCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCH
Confidence            9999999999999999999999886543221    11122111  1234556678899999999999999999     89


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      .+++.|.
T Consensus       251 ~~l~~h~  257 (323)
T cd05584         251 AEVQSHP  257 (323)
T ss_pred             HHHhcCC
Confidence            9998874

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.96  E-value=1.9e-28  Score=212.04  Aligned_cols=155  Identities=21%  Similarity=0.338  Sum_probs=125.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ ++|+||||+||+++.++.+||+|||.+.......    ...++..|++||.+.+.
T Consensus       101 ~~~~~~~~~~~~i~~al~~lH~~~-i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~  179 (261)
T cd05148         101 LPVASLIDMACQVAEGMAYLEEQN-SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHG  179 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHccC
Confidence            467889999999999999999999 9999999999999999999999999987654321    22345679999999888


Q ss_pred             CCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++||||||+++|+|++ |+.||......     .....+........+...++.+.+++.+||..+|.+|||+.++
T Consensus       180 ~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l  254 (261)
T cd05148         180 TFSTKSDVWSFGILLYEMFTYGQVPYPGMNNH-----EVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKAL  254 (261)
T ss_pred             CCCchhhHHHHHHHHHHHHcCCCCCCCcCCHH-----HHHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence            89999999999999999998 77777553211     1111222223334455677889999999999999999999999


Q ss_pred             HHHHHh
Q 019475          156 VISLMS  161 (340)
Q Consensus       156 l~~l~~  161 (340)
                      ++.|+.
T Consensus       255 ~~~L~~  260 (261)
T cd05148         255 REELDN  260 (261)
T ss_pred             HHHHhc
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.96  E-value=2.3e-28  Score=212.25  Aligned_cols=159  Identities=16%  Similarity=0.227  Sum_probs=127.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||++.......    ...++..|+|||.+.+.
T Consensus       103 ~~~~~~~~~~~~i~~~l~~LH~~~-i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~  181 (267)
T cd08229         103 IPEKTVWKYFVQLCSALEHMHSRR-VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN  181 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCC
Confidence            467889999999999999999999 9999999999999999999999999987654322    34678899999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|+||||+++|+|++|..||.........   ....+.. ......+...+..+.+++.+||..+|++|||+.+|
T Consensus       182 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i  258 (267)
T cd08229         182 GYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYS---LCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYV  258 (267)
T ss_pred             CccchhhHHHHHHHHHHHHhCCCCcccccchHHH---HhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHH
Confidence            8999999999999999999999887653222111   1111111 11111223467789999999999999999999999


Q ss_pred             HHHHHhhh
Q 019475          156 VISLMSLQ  163 (340)
Q Consensus       156 l~~l~~~~  163 (340)
                      ++.+.++.
T Consensus       259 ~~~~~~~~  266 (267)
T cd08229         259 YDVAKRMH  266 (267)
T ss_pred             HHHHhhhc
Confidence            99987653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.96  E-value=5.3e-29  Score=222.33  Aligned_cols=151  Identities=21%  Similarity=0.245  Sum_probs=121.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+.
T Consensus        93 ~~~~~~~~~~~qi~~~l~~lH~~g-ivH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (323)
T cd05575          93 FPEPRARFYAAEIASALGYLHSLN-IIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQ  171 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCC
Confidence            356778889999999999999999 999999999999999999999999998753221    234689999999999998


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA----  152 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~----  152 (340)
                      .++.++|||||||++|+|++|..||.........    ..+....  ...+...+..+.++|.+||+.||.+||++    
T Consensus       172 ~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~----~~i~~~~--~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~  245 (323)
T cd05575         172 PYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMY----DNILNKP--LRLKPNISVSARHLLEGLLQKDRTKRLGAKDDF  245 (323)
T ss_pred             CCCccccccccchhhhhhhcCCCCCCCCCHHHHH----HHHHcCC--CCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCH
Confidence            9999999999999999999999988764322211    1111111  12344567889999999999999999987    


Q ss_pred             HHHHHH
Q 019475          153 KSLVIS  158 (340)
Q Consensus       153 ~e~l~~  158 (340)
                      .++++|
T Consensus       246 ~~il~~  251 (323)
T cd05575         246 LEIKNH  251 (323)
T ss_pred             HHHHcC
Confidence            466654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=6.6e-29  Score=220.45  Aligned_cols=149  Identities=19%  Similarity=0.279  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccccC--
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMRTG--   76 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~--   76 (340)
                      .+..+-.|++.++.++|.+| |||.||||.|+|+- .|.+||+|||++.-....+      +.+||+.||+||.+...  
T Consensus       461 ~lk~ywkqML~aV~~IH~~g-IVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s  538 (677)
T KOG0596|consen  461 FLKFYWKQMLLAVKTIHQHG-IVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSS  538 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-eeecCCCcccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccc
Confidence            56678899999999999999 99999999999987 5789999999999877654      45799999999988532  


Q ss_pred             ---------CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhH-HHHHHHHHHhcccCC
Q 019475           77 ---------RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEG-TELVRLASRCLQSEA  146 (340)
Q Consensus        77 ---------~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~cl~~~p  146 (340)
                               +.++++||||||||+|+|+.|+.||..- ...  ...+..+.++...-++|.--. .++.++++.||..||
T Consensus       539 ~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~-~n~--~aKl~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdP  615 (677)
T KOG0596|consen  539 SRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQI-INQ--IAKLHAITDPNHEIEFPDIPENDELIDVMKCCLARDP  615 (677)
T ss_pred             cccCCCcceeecCccchhhhhhHHHHHHhcCCchHHH-HHH--HHHHHhhcCCCccccccCCCCchHHHHHHHHHHhcCc
Confidence                     3578999999999999999999877432 111  233444555543334433222 339999999999999


Q ss_pred             CCCCCHHHHHHH
Q 019475          147 RERPNAKSLVIS  158 (340)
Q Consensus       147 ~~Rps~~e~l~~  158 (340)
                      .+|||+.++|+|
T Consensus       616 kkR~si~eLLqh  627 (677)
T KOG0596|consen  616 KKRWSIPELLQH  627 (677)
T ss_pred             ccCCCcHHHhcC
Confidence            999999999987

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.96  E-value=3.2e-28  Score=210.85  Aligned_cols=156  Identities=24%  Similarity=0.325  Sum_probs=124.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++..++.++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||.++......     ...++..|++||+..+
T Consensus        99 ~~~~~~~~~~~~l~~aL~~lH~~~-i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  177 (262)
T cd05071          99 LRLPQLVDMAAQIASGMAYVERMN-YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY  177 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhcc
Confidence            467889999999999999999999 9999999999999999999999999987654332     2234567999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|+|++ |..||........     ............+...+..+.+++.+||+.+|++||++.+
T Consensus       178 ~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~  252 (262)
T cd05071         178 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-----LDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEY  252 (262)
T ss_pred             CCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHH-----HHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHH
Confidence            889999999999999999999 7766654422211     1111112222234456788999999999999999999999


Q ss_pred             HHHHHHhh
Q 019475          155 LVISLMSL  162 (340)
Q Consensus       155 ~l~~l~~~  162 (340)
                      +++.|+..
T Consensus       253 ~~~~l~~~  260 (262)
T cd05071         253 LQAFLEDY  260 (262)
T ss_pred             HHHHHHHh
Confidence            99988754

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.96  E-value=2.3e-28  Score=211.48  Aligned_cols=155  Identities=22%  Similarity=0.325  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.|++.||+|||+.+ ++||||||+||+++.++.++|+|||++.......     ...++..|+|||++.+
T Consensus        99 ~~~~~~~~i~~~i~~al~~LH~~~-i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~  177 (260)
T cd05067          99 LTINKLIDMAAQIAEGMAFIERKN-YIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINY  177 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-eecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhcc
Confidence            467889999999999999999999 9999999999999999999999999987655221     2234568999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|++++ |+.||.......     ....+........+...+.++.+++.+||..+|++|||+++
T Consensus       178 ~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  252 (260)
T cd05067         178 GTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPE-----VIQNLERGYRMPRPDNCPEELYELMRLCWKEKPEERPTFEY  252 (260)
T ss_pred             CCcCcccchHHHHHHHHHHHhCCCCCCCCCChHH-----HHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHH
Confidence            889999999999999999999 888876543221     11122222223344556778999999999999999999999


Q ss_pred             HHHHHHh
Q 019475          155 LVISLMS  161 (340)
Q Consensus       155 ~l~~l~~  161 (340)
                      ++..|+.
T Consensus       253 l~~~l~~  259 (260)
T cd05067         253 LRSVLED  259 (260)
T ss_pred             HHHHhhc
Confidence            9998864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.5e-29  Score=231.43  Aligned_cols=160  Identities=23%  Similarity=0.333  Sum_probs=135.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC------cccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS------YSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~   74 (340)
                      |+..+.+.|+.||+.|+.||-++. +|||||..+|+||+++..|||+|||+++..-....      ..-.+.|||||.+.
T Consensus       600 L~~~q~L~iA~QIAaGM~YLs~~~-FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIl  678 (774)
T KOG1026|consen  600 LSTSQFLHIATQIAAGMEYLSSHH-FVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESIL  678 (774)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCc-ccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhh
Confidence            567899999999999999999999 99999999999999999999999999986443322      22357899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .+++|.+|||||||||+||+++ |..|+++-     .+..+.+.+..+-.-+.|..++.++..||..||+..|.+||++.
T Consensus       679 y~kFTteSDVWs~GVvLWEIFsyG~QPy~gl-----Sn~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~  753 (774)
T KOG1026|consen  679 YGKFTTESDVWSFGVVLWEIFSYGKQPYYGL-----SNQEVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFK  753 (774)
T ss_pred             cCcccchhhhhhhhhhhhhhhccccCccccc-----chHHHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHH
Confidence            9999999999999999999998 56666654     33444455554444677889999999999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      ||-..|.......
T Consensus       754 eI~~~L~~~~~~s  766 (774)
T KOG1026|consen  754 EIHSRLQAWAQAS  766 (774)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999988766554

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.96  E-value=2.2e-28  Score=210.54  Aligned_cols=154  Identities=23%  Similarity=0.337  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC------cccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS------YSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.|++.||.|||+++ ++||||||+||+++.++.+||+|||++........      ...+..|+|||.+.
T Consensus        91 ~~~~~~~~~~~qi~~~L~~lH~~~-i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  169 (252)
T cd05084          91 LKVKELIQMVENAAAGMEYLESKH-CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALN  169 (252)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhc
Confidence            467889999999999999999999 99999999999999999999999999875443211      11235699999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++.++|||||||++|+|++ |..|+......     .....+........+...+..+.+|+.+||..+|++|||+.
T Consensus       170 ~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  244 (252)
T cd05084         170 YGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQ-----QTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFS  244 (252)
T ss_pred             CCCCChHHHHHHHHHHHHHHHhCCCCCccccCHH-----HHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHH
Confidence            8889999999999999999998 77665432211     12222222233344556678899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      ++++.|.
T Consensus       245 ~~~~~l~  251 (252)
T cd05084         245 TVHQELQ  251 (252)
T ss_pred             HHHHHHh
Confidence            9998874

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=7.3e-29  Score=229.39  Aligned_cols=158  Identities=18%  Similarity=0.219  Sum_probs=118.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |+|.+++.|+.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....      ....||+.|++||++.
T Consensus       257 l~~~~~~~i~~qi~~aL~yLH~~g-IvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~  335 (461)
T PHA03211        257 LGLAQVTAVARQLLSAIDYIHGEG-IIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLA  335 (461)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHc
Confidence            578999999999999999999999 999999999999999999999999998764322      1245899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh---hhhhhhHhhhc--------------------------cccCC
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI---RSKNFLLLMDS--------------------------ALEGH  125 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~---~~~~~~~~~~~--------------------------~~~~~  125 (340)
                      +..++.++|||||||++|||++|..++........   ....+.+++..                          .....
T Consensus       336 ~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  415 (461)
T PHA03211        336 GDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPA  415 (461)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCc
Confidence            99999999999999999999998755432110000   00000000000                          00000


Q ss_pred             CC-------chhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          126 FS-------NDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       126 ~~-------~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ..       ...+..+.+||.+||+.||.+|||+.|+++|-
T Consensus       416 ~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp  456 (461)
T PHA03211        416 YTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRLP  456 (461)
T ss_pred             cCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhCc
Confidence            00       02335788999999999999999999999873

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=5.8e-29  Score=222.39  Aligned_cols=156  Identities=14%  Similarity=0.254  Sum_probs=121.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+.
T Consensus        93 l~~~~~~~~~~qi~~al~~lH~~~-ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (327)
T cd05617          93 LPEEHARFYAAEICIALNFLHERG-IIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGE  171 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCC
Confidence            467889999999999999999999 99999999999999999999999999875321    2345689999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHH-hhh-hhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC---
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDL-IRS-KNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN---  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps---  151 (340)
                      .++.++|||||||++|+|++|..||....... ... ....+.+.. .....|...+..+.+++.+||..||.+|++   
T Consensus       172 ~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~  250 (327)
T cd05617         172 EYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILE-KPIRIPRFLSVKASHVLKGFLNKDPKERLGCQP  250 (327)
T ss_pred             CCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCC
Confidence            99999999999999999999999885321100 000 011111111 112345566788999999999999999998   


Q ss_pred             ---HHHHHHH
Q 019475          152 ---AKSLVIS  158 (340)
Q Consensus       152 ---~~e~l~~  158 (340)
                         +.+++.|
T Consensus       251 ~~~~~~i~~h  260 (327)
T cd05617         251 QTGFSDIKSH  260 (327)
T ss_pred             CCCHHHHHcC
Confidence               4577665

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.96  E-value=1.9e-28  Score=223.80  Aligned_cols=158  Identities=23%  Similarity=0.320  Sum_probs=127.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |++.+++.++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++.....      ....++..|+|||.+.
T Consensus       234 l~~~~~~~~~~qi~~aL~~LH~~~-ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~  312 (400)
T cd05105         234 LTTLDLLSFTYQVARGMEFLASKN-CVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIF  312 (400)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhc
Confidence            567889999999999999999999 999999999999999999999999998764332      1224567899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||+.....    ..+...+........+...+..+.+++.+||..+|++|||+.
T Consensus       313 ~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~  388 (400)
T cd05105         313 DNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVD----STFYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFL  388 (400)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCCCcccchh----HHHHHHHhcCCCCCCCccCCHHHHHHHHHHCccCHhHCcCHH
Confidence            8889999999999999999997 87777653211    111122222222334456678899999999999999999999


Q ss_pred             HHHHHHHhhh
Q 019475          154 SLVISLMSLQ  163 (340)
Q Consensus       154 e~l~~l~~~~  163 (340)
                      ++.+.|..+.
T Consensus       389 ~l~~~l~~l~  398 (400)
T cd05105         389 HLSDIVESLL  398 (400)
T ss_pred             HHHHHHHHHc
Confidence            9999998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.96  E-value=3e-28  Score=210.27  Aligned_cols=153  Identities=18%  Similarity=0.319  Sum_probs=121.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      ++|..++.++.|++.||.|||+++ ++|+||||+||+++.++.+||+|||.++......     ...++..|+|||++.+
T Consensus        97 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  175 (256)
T cd05114          97 LSKDMLLSMCQDVCEGMEYLERNS-FIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNF  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhccc
Confidence            478889999999999999999999 9999999999999999999999999987543221     1234567999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |+.||........     ...+........+...+..+.+++.+||..+|.+|||+.+
T Consensus       176 ~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~  250 (256)
T cd05114         176 SKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEV-----VEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAE  250 (256)
T ss_pred             CccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHH-----HHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHH
Confidence            889999999999999999999 8877755322111     1111111122223445678999999999999999999999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      +++.|
T Consensus       251 l~~~l  255 (256)
T cd05114         251 LLRAI  255 (256)
T ss_pred             HHHhh
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.96  E-value=7.9e-29  Score=220.63  Aligned_cols=157  Identities=13%  Similarity=0.219  Sum_probs=115.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE----cCCCCeEEecccCcccCCCC-------CCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF----DKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~----~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~a   69 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+|||+    +.++.+||+|||+++.....       ....+|+.|+|
T Consensus       105 l~~~~~~~i~~qi~~aL~~lH~~~-ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~a  183 (317)
T cd07867         105 LPRSMVKSLLYQILDGIHYLHANW-VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRA  183 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccC
Confidence            456778899999999999999999 9999999999999    56678999999999865432       23457889999


Q ss_pred             ccccccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh-----hhhhhHhh------------------------h
Q 019475           70 PEYMRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR-----SKNFLLLM------------------------D  119 (340)
Q Consensus        70 PE~~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~-----~~~~~~~~------------------------~  119 (340)
                      ||++.+. .++.++|||||||++|||++|.+||.........     ......+.                        .
T Consensus       184 PE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (317)
T cd07867         184 PELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQK  263 (317)
T ss_pred             cHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhh
Confidence            9998764 5789999999999999999999887532110000     00000000                        0


Q ss_pred             ccc------------cCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          120 SAL------------EGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       120 ~~~------------~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ...            ...........+.+|+.+||..||.+|||+.|+++|
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~h  314 (317)
T cd07867         264 DFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQD  314 (317)
T ss_pred             hhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhcC
Confidence            000            000011223568889999999999999999999876

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.96  E-value=2.5e-28  Score=210.80  Aligned_cols=153  Identities=22%  Similarity=0.328  Sum_probs=121.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++|+||||+||+++.++.+||+|||.++......     ...++..|++||.+.+
T Consensus        97 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~  175 (256)
T cd05113          97 FQPSQLLEMCKDVCEGMAYLESKQ-FIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLY  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhc
Confidence            467889999999999999999999 9999999999999999999999999987544322     1234567999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|+|++ |..||.......     ....+........+...+..+.+++.+||..+|.+||++.+
T Consensus       176 ~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~  250 (256)
T cd05113         176 SKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSE-----TVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQ  250 (256)
T ss_pred             CcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH-----HHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHH
Confidence            889999999999999999998 887765432211     11111111222233445678999999999999999999999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      ++..|
T Consensus       251 ll~~~  255 (256)
T cd05113         251 LLSSI  255 (256)
T ss_pred             HHHhh
Confidence            99876

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.96  E-value=2.2e-28  Score=215.58  Aligned_cols=158  Identities=17%  Similarity=0.257  Sum_probs=120.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++..++.++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||+++.....      ....++..|+|||++.
T Consensus       127 ~~~~~~~~~~~~i~~al~~LH~~~-i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  205 (296)
T cd05051         127 LSFSTLLYMATQIASGMRYLESLN-FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVL  205 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-ccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhh
Confidence            467889999999999999999999 999999999999999999999999998754322      2234567899999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh--CCCCCCcchhHHhhhhhhhHhh---hccccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS--GKHIPPSHALDLIRSKNFLLLM---DSALEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~--g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                      +..++.++|||||||++|+|++  |..|+........ ........   ........+...+.++.+++.+||+.+|.+|
T Consensus       206 ~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R  284 (296)
T cd05051         206 LGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQV-IENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDR  284 (296)
T ss_pred             cCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHH-HHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcC
Confidence            8889999999999999999998  4444433211111 00111110   0111112234456789999999999999999


Q ss_pred             CCHHHHHHHHH
Q 019475          150 PNAKSLVISLM  160 (340)
Q Consensus       150 ps~~e~l~~l~  160 (340)
                      ||+.++++.|.
T Consensus       285 pt~~el~~~L~  295 (296)
T cd05051         285 PTFREIHLFLQ  295 (296)
T ss_pred             CCHHHHHHHhc
Confidence            99999998875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.95  E-value=3.2e-28  Score=209.89  Aligned_cols=152  Identities=20%  Similarity=0.305  Sum_probs=123.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.|++.||.|||+.+ ++|+||||+||+++.++.++|+|||+++.....    ....+++.|+|||++.+.
T Consensus        98 ~~~~~~~~i~~~l~~al~~lH~~~-i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  176 (256)
T cd08529          98 LPEDQVWRFFIQILLGLAHLHSKK-ILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDK  176 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcCC
Confidence            467788999999999999999999 999999999999999999999999998765433    233578899999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+|||||++|+|++|+.||........    ..... .......+...+..+.+++.+||+.+|++||++.+++
T Consensus       177 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll  251 (256)
T cd08529         177 PYNEKSDVWALGVVLYECCTGKHPFDANNQGAL----ILKII-RGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLL  251 (256)
T ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHH-cCCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHh
Confidence            899999999999999999999998865432111    11111 1222233445678899999999999999999999998


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      ++
T Consensus       252 ~~  253 (256)
T cd08529         252 RN  253 (256)
T ss_pred             hC
Confidence            76

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.95  E-value=3e-28  Score=210.33  Aligned_cols=153  Identities=24%  Similarity=0.343  Sum_probs=122.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-----cccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-----YSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~   75 (340)
                      +++..++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||.++.......     ..++..|+|||.+.+
T Consensus        97 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~  175 (256)
T cd05059          97 LGTEWLLDMCSDVCEAMEYLESNG-FIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDY  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhcc
Confidence            467889999999999999999999 99999999999999999999999999876543211     122357999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|++++ |..||.......     ....+........+...+..+.+++.+||..+|++|||+.+
T Consensus       176 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~  250 (256)
T cd05059         176 SRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSE-----VVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKK  250 (256)
T ss_pred             CCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHH-----HHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHH
Confidence            899999999999999999999 676665432111     11122222223344556788999999999999999999999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      +++.|
T Consensus       251 ~l~~l  255 (256)
T cd05059         251 LLSQL  255 (256)
T ss_pred             HHHHh
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.95  E-value=2.8e-28  Score=218.47  Aligned_cols=161  Identities=20%  Similarity=0.340  Sum_probs=121.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~   78 (340)
                      +++.....++.|++.||.|||++++++|+||||+|||++.++.+||+|||++......  ....++..|+|||++.+..+
T Consensus       100 ~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  179 (333)
T cd06650         100 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY  179 (333)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccccCCCCccccCHHHhcCCCC
Confidence            3566778999999999999998633999999999999999999999999998754332  34568899999999998889


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh------------------------------------hhHhhhc--
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN------------------------------------FLLLMDS--  120 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~------------------------------------~~~~~~~--  120 (340)
                      +.++|||||||++|+|++|+.||............                                    .......  
T Consensus       180 ~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (333)
T cd06650         180 SVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIV  259 (333)
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHh
Confidence            99999999999999999999888653221111000                                    0000000  


Q ss_pred             -cccCCC-CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475          121 -ALEGHF-SNDEGTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus       121 -~~~~~~-~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                       ...... ....+.++.+|+.+||+.||++|||+.+++.|-.-
T Consensus       260 ~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~  302 (333)
T cd06650         260 NEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFI  302 (333)
T ss_pred             cCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHH
Confidence             000011 11245679999999999999999999999987543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.9e-28  Score=211.10  Aligned_cols=154  Identities=18%  Similarity=0.264  Sum_probs=123.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      +++..+..++.|++.||.|||+.+ ++|+||+|+||+++.++.++|+|||.++.....       ....++..|+|||.+
T Consensus       101 ~~~~~~~~~~~~l~~~l~~lH~~~-i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (263)
T cd06625         101 LTETVTRKYTRQILEGVEYLHSNM-IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVI  179 (263)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCccee
Confidence            356778899999999999999999 999999999999999999999999998754322       223567889999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .+..++.++||||||+++|+|++|+.||......    ...............+...+..+.+++.+||..+|.+|||+.
T Consensus       180 ~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  255 (263)
T cd06625         180 SGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAM----AAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAE  255 (263)
T ss_pred             ccCCCCchhhhHHHHHHHHHHHhCCCCccccchH----HHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHH
Confidence            9888999999999999999999999887543111    111112222222344556778899999999999999999999


Q ss_pred             HHHHHH
Q 019475          154 SLVISL  159 (340)
Q Consensus       154 e~l~~l  159 (340)
                      +++++.
T Consensus       256 ~ll~~~  261 (263)
T cd06625         256 ELLRHF  261 (263)
T ss_pred             HHhhCC
Confidence            999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.5e-28  Score=223.67  Aligned_cols=150  Identities=19%  Similarity=0.320  Sum_probs=125.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----CCCCcccCCccCCccccccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~   77 (340)
                      +.....-++..|+.||.|||++| ||+||||.+|||+|.+|++||+|||+++..-    .+.+.+||+.|+|||++.+..
T Consensus       466 ~e~rarfyaAev~l~L~fLH~~~-IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~  544 (694)
T KOG0694|consen  466 SEPRARFYAAEVVLGLQFLHENG-IIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQS  544 (694)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcC-ceeeecchhheEEcccCcEEecccccccccCCCCCccccccCChhhcChhhhccCc
Confidence            44556668999999999999999 9999999999999999999999999999643    346789999999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----H
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----A  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~  152 (340)
                      |+.+.|.|+|||++|||+.|+.||+++..+.    .+..++...  ..+|..++.+...+++++|..+|++|..     +
T Consensus       545 Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee----~FdsI~~d~--~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~  618 (694)
T KOG0694|consen  545 YTRAVDWWGLGVLLYEMLVGESPFPGDDEEE----VFDSIVNDE--VRYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDA  618 (694)
T ss_pred             ccchhhHHHHHHHHHHHHcCCCCCCCCCHHH----HHHHHhcCC--CCCCCcccHHHHHHHHHHhccCcccccCCCCCCc
Confidence            9999999999999999999999999764332    222222221  2356678899999999999999999974     4


Q ss_pred             HHHHHH
Q 019475          153 KSLVIS  158 (340)
Q Consensus       153 ~e~l~~  158 (340)
                      ++|..|
T Consensus       619 ~~i~~h  624 (694)
T KOG0694|consen  619 EDIKKH  624 (694)
T ss_pred             hhhhhC
Confidence            666555

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.95  E-value=3.7e-28  Score=209.44  Aligned_cols=154  Identities=25%  Similarity=0.407  Sum_probs=124.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.+++.++.|++.||.|||+.+ ++||||||+||+++.++.++|+|||++...... .....+..|+|||.+.+..++
T Consensus        97 ~~~~~~~~~~~qi~~al~~lH~~~-~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~  175 (254)
T cd05083          97 VSVIQLLQFSLDVAEGMEYLESKK-LVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFS  175 (254)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCceecCHHHhccCCcC
Confidence            367788999999999999999999 999999999999999999999999998765433 223345679999999888899


Q ss_pred             CccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .++|+|||||++|+|++ |..||........     ............+...+..+.+++.+||..+|..||++.++++.
T Consensus       176 ~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  250 (254)
T cd05083         176 SKSDVWSYGVLLWEVFSYGRAPYPKMSLKEV-----KECVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREK  250 (254)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCccCCHHHH-----HHHHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            99999999999999998 8877765432221     22222223333345567889999999999999999999999988


Q ss_pred             HH
Q 019475          159 LM  160 (340)
Q Consensus       159 l~  160 (340)
                      |.
T Consensus       251 l~  252 (254)
T cd05083         251 LE  252 (254)
T ss_pred             Hc
Confidence            75

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.95  E-value=1.5e-28  Score=223.61  Aligned_cols=159  Identities=16%  Similarity=0.192  Sum_probs=121.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      |++..+..++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++.....     ....++..|+|||++.+
T Consensus       100 l~~~~~~~~~~qi~~aL~~LH~~~-ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~  178 (372)
T cd07853         100 LSSDHVKVFLYQILRGLKYLHSAG-ILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMG  178 (372)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeCCCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcC
Confidence            467788999999999999999999 999999999999999999999999998754432     22356889999999887


Q ss_pred             C-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhh------------------hhhHhh-hccccC-------CCCc
Q 019475           76 G-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK------------------NFLLLM-DSALEG-------HFSN  128 (340)
Q Consensus        76 ~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~------------------~~~~~~-~~~~~~-------~~~~  128 (340)
                      . .++.++|||||||++|||++|+.||........-..                  .....+ ......       ....
T Consensus       179 ~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (372)
T cd07853         179 SRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSS  258 (372)
T ss_pred             CCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCC
Confidence            4 478999999999999999999998865421110000                  000000 000000       1122


Q ss_pred             hhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          129 DEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       129 ~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ..++++.+||.+||..||.+|||+.++++|.+
T Consensus       259 ~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~  290 (372)
T cd07853         259 QATHEAVHLLCRMLVFDPDKRISAADALAHPY  290 (372)
T ss_pred             CCCHHHHHHHHHhCCCChhhCcCHHHHhcCHh
Confidence            34678999999999999999999999998854

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.95  E-value=3.8e-28  Score=209.90  Aligned_cols=152  Identities=24%  Similarity=0.367  Sum_probs=120.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC--------eEEecccCcccCCCCCCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN--------PRLSSFGLMKNSRDGKSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~--------~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~   72 (340)
                      +++..++.++.||+.||+|||+++ ++||||||+||+++.++.        ++++|||++..........++..|+|||+
T Consensus        97 ~~~~~~~~~~~qi~~~l~~lH~~~-iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~  175 (258)
T cd05078          97 INISWKLEVAKQLAWALHFLEDKG-LTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIPWVPPEC  175 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCccceEEEecccccccCCCceEEecccccccccCCchhccccCCccCchh
Confidence            467888999999999999999999 999999999999987765        69999999887766666678899999999


Q ss_pred             cccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           73 MRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        73 ~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      +.+. .++.++|||||||++|+|++|..++...... ..   .......  ....+.....++.+++.+||+.+|++|||
T Consensus       176 ~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~-~~---~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps  249 (258)
T cd05078         176 IENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDS-QK---KLQFYED--RHQLPAPKWTELANLINQCMDYEPDFRPS  249 (258)
T ss_pred             ccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccH-HH---HHHHHHc--cccCCCCCcHHHHHHHHHHhccChhhCCC
Confidence            9864 4789999999999999999996443221111 11   1111111  12334445578999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      ++++++.|
T Consensus       250 ~~~il~~l  257 (258)
T cd05078         250 FRAIIRDL  257 (258)
T ss_pred             HHHHHHhc
Confidence            99999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.95  E-value=3.5e-28  Score=209.83  Aligned_cols=152  Identities=16%  Similarity=0.261  Sum_probs=124.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.+++.||.+||+++ ++||||||+||+++.++.++|+|||++......    ....+++.|+|||++.+.
T Consensus        99 l~~~~~~~~~~~l~~~l~~lH~~~-i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  177 (257)
T cd08223          99 LPENQVVEWFVQIAMALQYLHEKH-ILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNK  177 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcCC
Confidence            467889999999999999999999 999999999999999999999999998755322    234578899999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+|||||++++|++|+.||.........    ..... ......+...+..+.+++.+||+.+|++|||+.+++
T Consensus       178 ~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l  252 (257)
T cd08223         178 PYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLV----YRIIE-GKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSIL  252 (257)
T ss_pred             CCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHH----HHHHh-cCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHh
Confidence            8999999999999999999999887654322111    11111 112233455678899999999999999999999998


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      +|
T Consensus       253 ~~  254 (257)
T cd08223         253 RQ  254 (257)
T ss_pred             cC
Confidence            76

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=3.4e-28  Score=219.93  Aligned_cols=158  Identities=12%  Similarity=0.186  Sum_probs=117.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....   ....||..|+|||++.+..
T Consensus       154 ~~~~~~~~i~~qi~~aL~~LH~~~-ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  232 (357)
T PHA03209        154 LPIDQALIIEKQILEGLRYLHAQR-IIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDK  232 (357)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEECCCCCEEEecCccccccccCcccccccccccccCCeecCCCC
Confidence            578899999999999999999999 999999999999999999999999998753322   2346889999999999989


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchh----HH--hhhhhhhHhhh------cccc-------------------CCC
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHAL----DL--IRSKNFLLLMD------SALE-------------------GHF  126 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~----~~--~~~~~~~~~~~------~~~~-------------------~~~  126 (340)
                      ++.++|||||||++|||+++..++.....    ..  .....+..++.      ..+.                   ...
T Consensus       233 ~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (357)
T PHA03209        233 YNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPY  312 (357)
T ss_pred             CCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCcc
Confidence            99999999999999999986654422100    00  00000111000      0000                   000


Q ss_pred             -------CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          127 -------SNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       127 -------~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                             ....+.++.+||.+||+.||.+|||+.|+++|-
T Consensus       313 ~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp  352 (357)
T PHA03209        313 TRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYP  352 (357)
T ss_pred             cccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhcCc
Confidence                   012344567799999999999999999999873

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.95  E-value=4.5e-28  Score=218.08  Aligned_cols=159  Identities=22%  Similarity=0.340  Sum_probs=125.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      ++|.++++++.||+.||+|||+++ ++||||||+||+++.++.+||+|||++......      ....++..|+|||.+.
T Consensus       176 ~~~~~~~~~~~qi~~al~~lH~~~-i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  254 (343)
T cd05103         176 LTLEDLICYSFQVAKGMEFLASRK-CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF  254 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhc
Confidence            467889999999999999999999 999999999999999999999999998764322      1223456799999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++||||||+++|+|++ |..|++......    .....+........+...++.+.+++.+||+.+|.+|||+.
T Consensus       255 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~  330 (343)
T cd05103         255 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE----EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS  330 (343)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccH----HHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence            8889999999999999999997 887775432111    11111222222223334567899999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 019475          154 SLVISLMSLQK  164 (340)
Q Consensus       154 e~l~~l~~~~~  164 (340)
                      +++++|+.+..
T Consensus       331 eil~~l~~~~~  341 (343)
T cd05103         331 ELVEHLGNLLQ  341 (343)
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=3.7e-28  Score=213.00  Aligned_cols=161  Identities=18%  Similarity=0.321  Sum_probs=124.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      ++|.+++.++.||+.||.|||++| ++||||||+||+++.++.++|+|||+++......       ...++..|+|||++
T Consensus       106 ~~~~~~~~i~~~i~~aL~~lH~~g-i~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~  184 (284)
T cd05079         106 INLKQQLKYAVQICKGMDYLGSRQ-YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECL  184 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHh
Confidence            478899999999999999999999 9999999999999999999999999988654321       23456679999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh----------hhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI----------RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      .+..++.++|||||||++|+|+++..|.........          ........+......+.+..++..+.+|+.+||+
T Consensus       185 ~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  264 (284)
T cd05079         185 IQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWE  264 (284)
T ss_pred             ccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHcc
Confidence            888899999999999999999998755422111000          0001111111112222344567889999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhh
Q 019475          144 SEARERPNAKSLVISLMSL  162 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~  162 (340)
                      .+|.+|||+.++++.|+.+
T Consensus       265 ~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         265 FQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             CCcccCcCHHHHHHHHHhh
Confidence            9999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=4.7e-28  Score=209.02  Aligned_cols=155  Identities=25%  Similarity=0.394  Sum_probs=125.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-cccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-YSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++..++.++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||.++....... ...+..|++||.+.++.++
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lh~~~-i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~~~~~  177 (256)
T cd05039          99 ITLAQQLGFALDVCEGMEYLEEKN-FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKKFS  177 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccchhcccceEEEeCCCCEEEcccccccccccccccCCCcccccCchhhcCCcCC
Confidence            467899999999999999999999 99999999999999999999999999887643322 2335679999999988899


Q ss_pred             CccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .++||||||+++|++++ |..||.......     ....+........+...++.+.+++.+||..+|++|||+.+++..
T Consensus       178 ~~~Di~slG~il~~l~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  252 (256)
T cd05039         178 TKSDVWSFGILLWEIYSFGRVPYPRIPLKD-----VVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQ  252 (256)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCCCCCHHH-----HHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHHH
Confidence            99999999999999997 887775542222     112222222223344567889999999999999999999999998


Q ss_pred             HHh
Q 019475          159 LMS  161 (340)
Q Consensus       159 l~~  161 (340)
                      |..
T Consensus       253 l~~  255 (256)
T cd05039         253 LAL  255 (256)
T ss_pred             Hhc
Confidence            864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=4.5e-29  Score=223.45  Aligned_cols=152  Identities=19%  Similarity=0.203  Sum_probs=119.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.++.++|+|||++.....    .....||+.|+|||++.+.
T Consensus        93 ~~~~~~~~~~~qil~al~~LH~~~-ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (330)
T cd05586          93 FSEDRAKFYIAELVLALEHLHKYD-IVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDE  171 (330)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCC
Confidence            466788899999999999999999 99999999999999999999999999875322    2345689999999998765


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCC-chhHHHHHHHHHHhcccCCCCCC----
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS-NDEGTELVRLASRCLQSEARERP----  150 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~cl~~~p~~Rp----  150 (340)
                       .++.++|||||||++|+|++|..||.........    ..+.....  .++ ...+.++.+++.+||..+|.+||    
T Consensus       172 ~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~----~~i~~~~~--~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~  245 (330)
T cd05586         172 KGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMY----RNIAFGKV--RFPKNVLSDEGRQFVKGLLNRNPQHRLGAHR  245 (330)
T ss_pred             CCCCCccceeccccEEEEeccCCCCCCCCCHHHHH----HHHHcCCC--CCCCccCCHHHHHHHHHHcCCCHHHCCCCCC
Confidence             4789999999999999999999998764322211    11111111  112 23567899999999999999998    


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      ++.++++|.
T Consensus       246 ~~~~ll~h~  254 (330)
T cd05586         246 DAVELKEHP  254 (330)
T ss_pred             CHHHHhcCc
Confidence            678887764

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.95  E-value=6.2e-28  Score=209.78  Aligned_cols=154  Identities=20%  Similarity=0.318  Sum_probs=123.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-----CeEEecccCcccCCCC------CCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-----NPRLSSFGLMKNSRDG------KSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-----~~kl~Dfg~~~~~~~~------~~~~~~~~y~a   69 (340)
                      ++|.+++.++.||+.||.|||+++ ++|+||||+||+++.++     .++++|||++......      ....++..|+|
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lH~~~-i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  181 (269)
T cd05044         103 LTLKELLDICLDVAKGCVYLEQMH-FIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMA  181 (269)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCC-cccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccC
Confidence            467889999999999999999999 99999999999999887     8999999998754322      12234678999


Q ss_pred             ccccccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCC
Q 019475           70 PEYMRTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARE  148 (340)
Q Consensus        70 PE~~~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~  148 (340)
                      ||++.++.++.++|||||||++|+|++ |..||.......     ....+........+...+..+.+++.+||..+|.+
T Consensus       182 PE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  256 (269)
T cd05044         182 PESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQE-----VLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSE  256 (269)
T ss_pred             HHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHH-----HHHHHhcCCccCCcccchHHHHHHHHHHcCCCccc
Confidence            999999999999999999999999998 888876532211     11111112222334566788999999999999999


Q ss_pred             CCCHHHHHHHHH
Q 019475          149 RPNAKSLVISLM  160 (340)
Q Consensus       149 Rps~~e~l~~l~  160 (340)
                      ||++.++++.|.
T Consensus       257 Rp~~~~i~~~l~  268 (269)
T cd05044         257 RPTFDRIQEILQ  268 (269)
T ss_pred             CCCHHHHHHHHh
Confidence            999999998875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.4e-28  Score=214.34  Aligned_cols=156  Identities=17%  Similarity=0.244  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.|++.||.|||+++ ++||||||+||+++.++.++|+|||++......   ....+++.|+|||++.+..
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  177 (285)
T cd05605          99 FDEERAVFYAAEITCGLEDLHRER-IVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNER  177 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cEecCCCHHHEEECCCCCEEEeeCCCceecCCCCccccccCCCCccCcHHhcCCC
Confidence            467888999999999999999999 999999999999999999999999998865433   2346789999999999888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NA  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~  152 (340)
                      ++.++||||+||++|+|++|+.||......... ..+...+.. .....+...+..+.+|+.+||..||.+||     ++
T Consensus       178 ~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~  255 (285)
T cd05605         178 YTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKR-EEVERRVKE-DQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGA  255 (285)
T ss_pred             CCccccchhHHHHHHHHHHCCCCCCCCchhhHH-HHHHHHhhh-cccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCH
Confidence            999999999999999999999988754221111 111111111 12233455678899999999999999999     88


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      +++++|.
T Consensus       256 ~~l~~~~  262 (285)
T cd05605         256 EEVKAHP  262 (285)
T ss_pred             HHHhcCc
Confidence            8998773

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.95  E-value=4.6e-28  Score=208.42  Aligned_cols=154  Identities=25%  Similarity=0.352  Sum_probs=122.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC------cccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS------YSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~   74 (340)
                      +++..++.++.+++.||.|||+++ ++||||+|+||+++.++.++|+|||.+........      ...+..|+|||.+.
T Consensus        90 ~~~~~~~~~~~~~~~~l~~lH~~~-i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  168 (251)
T cd05041          90 LTVKKLLQMSLDAAAGMEYLESKN-CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALN  168 (251)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhc
Confidence            356788999999999999999999 99999999999999999999999999876542211      12245699999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++.++|+|||||++|+|++ |..||.......     ....+........+...+..+.+++.+||..+|.+|||+.
T Consensus       169 ~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  243 (251)
T cd05041         169 YGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQ-----TRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFS  243 (251)
T ss_pred             cCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHH-----HHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHH
Confidence            8889999999999999999999 676665543221     1122222222234456678899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      ++++.|.
T Consensus       244 ell~~l~  250 (251)
T cd05041         244 EIYNELQ  250 (251)
T ss_pred             HHHHHhh
Confidence            9998875

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.95  E-value=5e-28  Score=210.29  Aligned_cols=156  Identities=21%  Similarity=0.278  Sum_probs=124.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-------cccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-------YSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.|++.||.|||+.+ ++|+||||+||+++.++.++++|||++........       ...+..|++||++
T Consensus       104 ~~~~~~~~~~~~l~~al~~lH~~~-i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  182 (268)
T cd05063         104 FSSYQLVGMLRGIAAGMKYLSDMN-YVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAI  182 (268)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHh
Confidence            478899999999999999999999 99999999999999999999999999875543211       1123569999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++||+++ |..||......     .....+......+.+...+..+.+++.+||..+|++||++
T Consensus       183 ~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~  257 (268)
T cd05063         183 AYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNH-----EVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRF  257 (268)
T ss_pred             hcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHH-----HHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCH
Confidence            88889999999999999999997 88887543221     1222222222223344567889999999999999999999


Q ss_pred             HHHHHHHHhh
Q 019475          153 KSLVISLMSL  162 (340)
Q Consensus       153 ~e~l~~l~~~  162 (340)
                      .++++.|.++
T Consensus       258 ~~i~~~l~~~  267 (268)
T cd05063         258 VDIVNLLDKL  267 (268)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.95  E-value=2.7e-28  Score=211.90  Aligned_cols=155  Identities=16%  Similarity=0.211  Sum_probs=127.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCCCCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.++..++.||+.||.|||+.+ ++||||||+||+++.++ .++|+|||++..........++..|+|||++.+..++
T Consensus       106 l~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  184 (267)
T PHA03390        106 LSEAEVKKIIRQLVEALNDLHKHN-IIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKGHNYD  184 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCCCCCcccChhhhcCCCCC
Confidence            578899999999999999999999 99999999999999998 9999999999877766667789999999999988899


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-HHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-AKSLVIS  158 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-~~e~l~~  158 (340)
                      .++|+||||+++|+|++|..||.......+..........  .....+...++.+.++|.+||+.+|.+||+ ++++++|
T Consensus       185 ~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h  262 (267)
T PHA03390        185 VSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQ--KKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKH  262 (267)
T ss_pred             chhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhc--ccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhcC
Confidence            9999999999999999999888644322222222222221  111233456788999999999999999996 6999876

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.95  E-value=2.5e-28  Score=217.87  Aligned_cols=151  Identities=16%  Similarity=0.323  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+.
T Consensus        98 l~~~~~~~i~~qi~~al~~lH~~~-ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  176 (323)
T cd05615          98 FKEPQAVFYAAEISVGLFFLHRRG-IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQ  176 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHHHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCC
Confidence            467889999999999999999999 999999999999999999999999998754322    234689999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA----  152 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~----  152 (340)
                      .++.++|||||||++|+|++|..||........    ...+....  ...+...+.++.+++.+||..+|.+|++.    
T Consensus       177 ~~~~~~DiwslGvil~elltG~~pf~~~~~~~~----~~~i~~~~--~~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~~  250 (323)
T cd05615         177 PYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDEL----FQSIMEHN--VSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEG  250 (323)
T ss_pred             CCCCccchhhhHHHHHHHHhCCCCCCCCCHHHH----HHHHHhCC--CCCCccCCHHHHHHHHHHcccCHhhCCCCCCCC
Confidence            899999999999999999999998866432211    11222111  23445567889999999999999999974    


Q ss_pred             -HHHHHH
Q 019475          153 -KSLVIS  158 (340)
Q Consensus       153 -~e~l~~  158 (340)
                       .++++|
T Consensus       251 ~~~i~~h  257 (323)
T cd05615         251 ERDIREH  257 (323)
T ss_pred             HHHHhcC
Confidence             455554

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-28  Score=203.15  Aligned_cols=160  Identities=15%  Similarity=0.137  Sum_probs=127.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC---CCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD---GNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      ++..++-.|+.||+.|+.|||+.+ |.||||||+|+|....   -.+||+|||+++.....   .+..-|+.|.|||++.
T Consensus       158 fTErea~eI~~qI~~Av~~lH~~n-IAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg  236 (400)
T KOG0604|consen  158 FTEREASEIMKQIGLAVRYLHSMN-IAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLG  236 (400)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcc-hhhccCChhheeeecCCCCcceEecccccccccCCCccccCCcccccccCHHHhC
Confidence            356778899999999999999999 9999999999999754   46899999999976643   3445689999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      ..+|+..+|+||+||++|-|+.|.+||+..--..+..+--.++....  +..+-....++..+++|+.+|..+|.+|.|+
T Consensus       237 ~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI  316 (400)
T KOG0604|consen  237 PEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTI  316 (400)
T ss_pred             chhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeH
Confidence            99999999999999999999999999977432222222222222221  1222234678999999999999999999999


Q ss_pred             HHHHHHHHh
Q 019475          153 KSLVISLMS  161 (340)
Q Consensus       153 ~e~l~~l~~  161 (340)
                      ++++.|.+-
T Consensus       317 ~~~m~hpwi  325 (400)
T KOG0604|consen  317 EEVMDHPWI  325 (400)
T ss_pred             HHhhcCchh
Confidence            999988654

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.95  E-value=3.1e-28  Score=211.99  Aligned_cols=153  Identities=13%  Similarity=0.206  Sum_probs=120.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~--   74 (340)
                      +++..+..++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||++......    ....++..|+|||++.  
T Consensus       108 l~~~~~~~~~~qi~~~l~~LH~~~-ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  186 (272)
T cd06637         108 LKEEWIAYICREILRGLSHLHQHK-VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACD  186 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CccCCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhccc
Confidence            467888999999999999999999 999999999999999999999999998754322    3446788999999986  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                         +..++.++|||||||++|+|++|..||.......    ..............+...+..+.+|+.+||..+|.+|||
T Consensus       187 ~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt  262 (272)
T cd06637         187 ENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR----ALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPT  262 (272)
T ss_pred             cCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHH----HHHHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCC
Confidence               3357889999999999999999998875432111    111111111111223345678999999999999999999


Q ss_pred             HHHHHHH
Q 019475          152 AKSLVIS  158 (340)
Q Consensus       152 ~~e~l~~  158 (340)
                      +.+++.|
T Consensus       263 ~~~il~~  269 (272)
T cd06637         263 TEQLMKH  269 (272)
T ss_pred             HHHHhhC
Confidence            9999876

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.95  E-value=1.3e-28  Score=220.11  Aligned_cols=146  Identities=21%  Similarity=0.265  Sum_probs=117.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~   77 (340)
                      +......++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..
T Consensus        94 ~~~~~~~~~~qi~~~L~~lH~~g-iiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  172 (325)
T cd05602          94 LEPRARFYAAEIASALGYLHSLN-IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQP  172 (325)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-eEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCC
Confidence            45667779999999999999999 99999999999999999999999999875322    23456899999999999989


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ++.++|||||||++|+|++|..||........    ...+...  ....++..+..+.+++.+||+.+|.+||++.+
T Consensus       173 ~~~~~DiwslG~il~el~~g~~pf~~~~~~~~----~~~i~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  243 (325)
T cd05602         173 YDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEM----YDNILNK--PLQLKPNITNSARHLLEGLLQKDRTKRLGAKD  243 (325)
T ss_pred             CCCccccccccHHHHHHhcCCCCCCCCCHHHH----HHHHHhC--CcCCCCCCCHHHHHHHHHHcccCHHHCCCCCC
Confidence            99999999999999999999999876432221    1111111  11234456788999999999999999998763

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.95  E-value=6.9e-28  Score=208.07  Aligned_cols=155  Identities=21%  Similarity=0.287  Sum_probs=123.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      ++|...+.++.|++.||.|||+++ ++|+||+|+||+++.++.+||+|||+++.....       ....++..|+|||++
T Consensus        94 ~~~~~~~~~~~qi~~~L~~lH~~~-i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~  172 (257)
T cd05040          94 FLISTLCDYAVQIANGMRYLESKR-FIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESL  172 (257)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhCC-ccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHh
Confidence            468889999999999999999999 999999999999999999999999998865432       123456789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|+|++ |..||.........    ..+.........+...+..+.+++.+||..+|++|||+
T Consensus       173 ~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  248 (257)
T cd05040         173 RTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQIL----KKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTF  248 (257)
T ss_pred             cccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHH----HHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCH
Confidence            98889999999999999999998 98877543222111    11111111122334556789999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          153 KSLVISLM  160 (340)
Q Consensus       153 ~e~l~~l~  160 (340)
                      .++++.|.
T Consensus       249 ~~~~~~l~  256 (257)
T cd05040         249 AALREFLP  256 (257)
T ss_pred             HHHHHHhc
Confidence            99998764

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.95  E-value=1.3e-28  Score=219.72  Aligned_cols=145  Identities=21%  Similarity=0.279  Sum_probs=117.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~   77 (340)
                      +..++..++.||+.||.|||+++ |+||||||+||+++.+|.+||+|||+++....    .....||+.|+|||++.+..
T Consensus        94 ~~~~~~~~~~qi~~~L~~lH~~~-ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  172 (321)
T cd05603          94 LEPRARFYAAEVASAIGYLHSLN-IIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEP  172 (321)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-eEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCC
Confidence            45677889999999999999999 99999999999999999999999999875322    12346789999999999888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++|||||||++|||++|..||.........    ..+...  ....+...+..+.+++.+||+.+|.+||++.
T Consensus       173 ~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~----~~i~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         173 YDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMY----DNILHK--PLQLPGGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CCCcCcccccchhhhhhhcCCCCCCCCCHHHHH----HHHhcC--CCCCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence            999999999999999999999988765322211    111111  1234455677899999999999999998753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2.9e-28  Score=234.77  Aligned_cols=162  Identities=25%  Similarity=0.339  Sum_probs=132.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCc------ccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY------STNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~------~~~~~y~aPE~~~   74 (340)
                      |+....+.++.||+.|+.||++++ +|||||..+|+|++....|||+|||+++.......+      .-...|||||.+.
T Consensus       799 L~~~dLl~~a~dvA~G~~YLe~~~-fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~  877 (1025)
T KOG1095|consen  799 LSMRDLLAFALDVAKGMNYLESKH-FVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLK  877 (1025)
T ss_pred             CCHHHHHHHHHHHhhhhHHHHhCC-CcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHh
Confidence            567889999999999999999999 999999999999999999999999999943322111      2246899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhC-CCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSG-KHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .+.++.++|||||||++||++|. ..|++..     .+..+...+...-+-+.|..++..+.++|..||..+|++||++.
T Consensus       878 d~iFtskSDvWsFGVllWEifslG~~PY~~~-----~n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~  952 (1025)
T KOG1095|consen  878 DGIFTSKSDVWSFGVLLWEIFSLGATPYPSR-----SNFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFR  952 (1025)
T ss_pred             hcccccccchhhhHHHHHHHHhCCCCCCCCc-----chHHHHHHHHhCCccCCCCCCChHHHHHHHHHccCChhhCccHH
Confidence            99999999999999999999995 4555553     22222332222225567888999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccC
Q 019475          154 SLVISLMSLQKEAEV  168 (340)
Q Consensus       154 e~l~~l~~~~~~~~~  168 (340)
                      .+++.+..+......
T Consensus       953 ~i~~q~~~i~~~~~~  967 (1025)
T KOG1095|consen  953 TIVEQDPAISNAALG  967 (1025)
T ss_pred             HHHhhhhhhhhhhcc
Confidence            999988887776543

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.95  E-value=6.1e-28  Score=210.26  Aligned_cols=156  Identities=19%  Similarity=0.264  Sum_probs=123.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++...+.++.||+.||+|||+++ ++||||||+||+++.++.+||+|||+++......      ...++..|++||.+.
T Consensus       110 l~~~~~~~~~~~i~~~l~~lH~~~-i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  188 (273)
T cd05074         110 LPLQTLVRFMIDIASGMEYLSSKN-FIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLA  188 (273)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHh
Confidence            466788999999999999999999 9999999999999999999999999988654321      223456799999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |.+||.......     ....+........+...+..+.+++.+||..+|++|||+.
T Consensus       189 ~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~  263 (273)
T cd05074         189 DNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSE-----IYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQ  263 (273)
T ss_pred             cCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHH-----HHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            8889999999999999999999 777665432211     1111111111122345567899999999999999999999


Q ss_pred             HHHHHHHhh
Q 019475          154 SLVISLMSL  162 (340)
Q Consensus       154 e~l~~l~~~  162 (340)
                      ++++.|+.+
T Consensus       264 ~~~~~l~~~  272 (273)
T cd05074         264 HLRDQLELI  272 (273)
T ss_pred             HHHHHHHhh
Confidence            999998765

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.95  E-value=8.1e-28  Score=208.71  Aligned_cols=159  Identities=17%  Similarity=0.245  Sum_probs=126.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.+++.||.|||+.| ++||||+|+||+++.++.++|+|||++......    ....++..|+|||.+.+.
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lh~~~-i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~  181 (267)
T cd08224         103 IPERTIWKYFVQLCSALEHMHSKR-IMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN  181 (267)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-EecCCcChhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccC
Confidence            467788999999999999999999 999999999999999999999999998755432    234578889999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCc-hhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSN-DEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|+|||||++|+|++|+.||........   .....+........+. ..+..+.++|.+||..+|++|||+.++
T Consensus       182 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~i  258 (267)
T cd08224         182 GYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY---SLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYV  258 (267)
T ss_pred             CCCchhcHHHHHHHHHHHHHCCCCcccCCccHH---HHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHH
Confidence            899999999999999999999988765432111   1111111111222222 456789999999999999999999999


Q ss_pred             HHHHHhhh
Q 019475          156 VISLMSLQ  163 (340)
Q Consensus       156 l~~l~~~~  163 (340)
                      ++.|..+.
T Consensus       259 l~~~~~~~  266 (267)
T cd08224         259 LQVAKEMH  266 (267)
T ss_pred             HHHHHHhc
Confidence            99988754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.95  E-value=2.5e-28  Score=214.45  Aligned_cols=155  Identities=21%  Similarity=0.333  Sum_probs=121.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.|++.||+|||+. + ++||||||+||+++.++.++|+|||+++.....   ....++..|++||++.+.
T Consensus       104 l~~~~~~~i~~~i~~~l~~lh~~~~-i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  182 (288)
T cd06616         104 IPEEILGKIAVATVKALNYLKEELK-IIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPS  182 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCC-eeccCCCHHHEEEccCCcEEEeecchhHHhccCCccccccCccCccCHHHhccc
Confidence            45678889999999999999985 7 999999999999999999999999998754432   234578899999999866


Q ss_pred             ---CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh---ccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           77 ---RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD---SALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        77 ---~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                         .++.++|||||||++|+|++|+.||.......   ....+...   +......+...+.++.+|+.+||..+|++||
T Consensus       183 ~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  259 (288)
T cd06616         183 ARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVF---DQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRP  259 (288)
T ss_pred             cccCCcchhhhhHHHHHHHHHHhCCCCchhcchHH---HHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCc
Confidence               68899999999999999999998876542110   11111111   1111122234677899999999999999999


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      |+.+++.+-
T Consensus       260 t~~~i~~~~  268 (288)
T cd06616         260 KYKELLEHP  268 (288)
T ss_pred             CHHHHhcCh
Confidence            999999874

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.95  E-value=8.7e-28  Score=206.58  Aligned_cols=154  Identities=23%  Similarity=0.359  Sum_probs=123.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.|++.||.|+|+++ ++||||||+||+++.++.++|+|||++.......     ...++..|+|||++.+
T Consensus        90 ~~~~~~~~~~~~i~~~l~~lH~~~-~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  168 (250)
T cd05085          90 LKTKQLVKFALDAAAGMAYLESKN-CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNY  168 (250)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhcc
Confidence            467889999999999999999999 9999999999999999999999999987543321     1233567999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|++++ |..||........     ...+........+...+..+.+++.+||..+|++||++.+
T Consensus       169 ~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  243 (250)
T cd05085         169 GRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQA-----REQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSE  243 (250)
T ss_pred             CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHH-----HHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHH
Confidence            889999999999999999998 8878765432211     1111222223344566788999999999999999999999


Q ss_pred             HHHHHH
Q 019475          155 LVISLM  160 (340)
Q Consensus       155 ~l~~l~  160 (340)
                      +++.|.
T Consensus       244 l~~~l~  249 (250)
T cd05085         244 LQKELA  249 (250)
T ss_pred             HHHHhc
Confidence            998763

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.95  E-value=5.9e-28  Score=212.12  Aligned_cols=154  Identities=21%  Similarity=0.303  Sum_probs=121.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.++|+|||++......      .....+..|+|||.+.
T Consensus       127 l~~~~~~~~~~~i~~aL~~lH~~~-i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  205 (288)
T cd05050         127 LSCTEQLCIAKQVAAGMAYLSERK-FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIF  205 (288)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-eecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHh
Confidence            357788999999999999999999 999999999999999999999999998754322      1223456799999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||.......     ....+........+...+.++.+|+.+||+.+|.+|||+.
T Consensus       206 ~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~  280 (288)
T cd05050         206 YNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEE-----VIYYVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFA  280 (288)
T ss_pred             cCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHhcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHH
Confidence            8889999999999999999997 766765432211     1111111111123445667899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      |+++.|+
T Consensus       281 el~~~l~  287 (288)
T cd05050         281 SINRILQ  287 (288)
T ss_pred             HHHHHhh
Confidence            9999875

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.95  E-value=1e-28  Score=220.73  Aligned_cols=151  Identities=19%  Similarity=0.235  Sum_probs=120.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+.
T Consensus        93 ~~~~~~~~~~~qi~~al~~lH~~g-ivH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (325)
T cd05604          93 FPEPRARFYAAEIASALGYLHSIN-IVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQ  171 (325)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCC
Confidence            467788899999999999999999 99999999999999999999999999875322    2334689999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH---
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK---  153 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~---  153 (340)
                      .++.++|||||||++|+|++|..||.........    ..+....  ...++..+..+.+++.+||..+|.+||++.   
T Consensus       172 ~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~  245 (325)
T cd05604         172 PYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMY----DNILHKP--LVLRPGASLTAWSILEELLEKDRQRRLGAKEDF  245 (325)
T ss_pred             CCCCcCccccccceehhhhcCCCCCCCCCHHHHH----HHHHcCC--ccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCH
Confidence            9999999999999999999999988764322211    1111111  122345677899999999999999999875   


Q ss_pred             -HHHHH
Q 019475          154 -SLVIS  158 (340)
Q Consensus       154 -e~l~~  158 (340)
                       +++.|
T Consensus       246 ~~i~~h  251 (325)
T cd05604         246 LEIQEH  251 (325)
T ss_pred             HHHhcC
Confidence             55544

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.1e-27  Score=211.26  Aligned_cols=157  Identities=18%  Similarity=0.220  Sum_probs=119.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCcccccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~   75 (340)
                      ++..++.++.|++.||.|||+++ ++|+||||+||+++.++.+||+|||++.......      ...++..|+|||++.+
T Consensus       127 ~~~~~~~i~~~i~~al~~lH~~~-i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  205 (295)
T cd05097         127 SIANLLYMAVQIASGMKYLASLN-FVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILL  205 (295)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcC-eeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhcc
Confidence            57788999999999999999999 9999999999999999999999999987543321      1234668999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHhCC--CCCCcchhHHhhhhhhhHhhh---ccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGK--HIPPSHALDLIRSKNFLLLMD---SALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      +.++.++|||||||++|+|+++.  .||.......... ...+...   .......+...+..+.+|+.+||+.+|++||
T Consensus       206 ~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RP  284 (295)
T cd05097         206 GKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIE-NTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRP  284 (295)
T ss_pred             CCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHH-HHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCc
Confidence            88999999999999999999844  4443322111111 0111111   1111122344567899999999999999999


Q ss_pred             CHHHHHHHHH
Q 019475          151 NAKSLVISLM  160 (340)
Q Consensus       151 s~~e~l~~l~  160 (340)
                      |++++++.|.
T Consensus       285 s~~~i~~~l~  294 (295)
T cd05097         285 TFNKIHHFLR  294 (295)
T ss_pred             CHHHHHHHHh
Confidence            9999998875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.95  E-value=3e-28  Score=221.17  Aligned_cols=155  Identities=17%  Similarity=0.214  Sum_probs=122.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      ++...+..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||++......     ....||+.|+|||++.+
T Consensus       139 l~~~~~~~~~~qi~~aL~~LH~~~-ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  217 (370)
T cd05596         139 IPEKWARFYTAEVVLALDAIHSMG-FIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKS  217 (370)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhcc
Confidence            355677889999999999999999 999999999999999999999999998765432     24568999999999865


Q ss_pred             C----CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCc--hhHHHHHHHHHHhcccCCCC-
Q 019475           76 G----RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSN--DEGTELVRLASRCLQSEARE-  148 (340)
Q Consensus        76 ~----~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~cl~~~p~~-  148 (340)
                      .    .++.++|||||||++|||++|..||.......    ....+........++.  ..+.++.+||.+||..+|.+ 
T Consensus       218 ~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~----~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~  293 (370)
T cd05596         218 QGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG----TYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRL  293 (370)
T ss_pred             CCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHH----HHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhcc
Confidence            3    37889999999999999999999987653221    1222222111112222  45788999999999999988 


Q ss_pred             -CCCHHHHHHHHH
Q 019475          149 -RPNAKSLVISLM  160 (340)
Q Consensus       149 -Rps~~e~l~~l~  160 (340)
                       |+|+.++++|.+
T Consensus       294 ~R~s~~ell~h~~  306 (370)
T cd05596         294 GRNGVDEIKSHPF  306 (370)
T ss_pred             CCCCHHHHhcCcc
Confidence             999999998853

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.95  E-value=5.7e-28  Score=211.24  Aligned_cols=158  Identities=20%  Similarity=0.312  Sum_probs=122.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~   78 (340)
                      +++.....++.|++.||.|||+.+ ++|+||||+||+++.++.++|+|||++......  ....++..|+|||++.+..+
T Consensus        92 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  170 (279)
T cd06619          92 IPEHVLGRIAVAVVKGLTYLWSLK-ILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQY  170 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCChhhcCceeecCCCC
Confidence            356778899999999999999999 999999999999999999999999998765433  34567899999999998889


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHH--h-hhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDL--I-RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      +.++|+|||||++|+|++|+.||.......  . .....................++++.+++.+||..+|.+||+++++
T Consensus       171 ~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~ei  250 (279)
T cd06619         171 GIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENL  250 (279)
T ss_pred             CCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHH
Confidence            999999999999999999998875421110  0 0011111111111111122356789999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      +++.
T Consensus       251 l~~~  254 (279)
T cd06619         251 MDHP  254 (279)
T ss_pred             hcCc
Confidence            9874

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.95  E-value=7.2e-28  Score=211.11  Aligned_cols=161  Identities=20%  Similarity=0.333  Sum_probs=123.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-------cccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-------YSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.|++.||.|||++| ++||||||+||+++.++.+||+|||++........       ..++..|+|||++
T Consensus       105 l~~~~~~~~~~~l~~aL~~LH~~~-i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  183 (284)
T cd05081         105 LDHRKLLLYASQICKGMEYLGSKR-YVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESL  183 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHh
Confidence            468889999999999999999999 99999999999999999999999999886543321       1223459999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh---h--------hhhhHhhhccccCCCCchhHHHHHHHHHHhc
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR---S--------KNFLLLMDSALEGHFSNDEGTELVRLASRCL  142 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  142 (340)
                      .+..++.++|||||||++|||++|..++.........   .        ......+........+...+..+.+|+.+||
T Consensus       184 ~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  263 (284)
T cd05081         184 TESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECW  263 (284)
T ss_pred             ccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHc
Confidence            9888999999999999999999987654322111100   0        0111112222222234456788999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhh
Q 019475          143 QSEARERPNAKSLVISLMSL  162 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~  162 (340)
                      ..+|++|||+.+++..|+.+
T Consensus       264 ~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         264 NNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             cCChhhCCCHHHHHHHHHhc
Confidence            99999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.95  E-value=6.4e-28  Score=211.58  Aligned_cols=155  Identities=19%  Similarity=0.265  Sum_probs=123.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..++.|++.||.|||+++ |+||||||+||+++.++.++|+|||++......   ....++..|+|||++.+..
T Consensus        99 ~~~~~~~~~~~ql~~~l~~lH~~~-iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~~  177 (285)
T cd05632          99 FEEERALFYAAEILCGLEDLHREN-TVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQR  177 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccCCCCCcCccChHHhcCCC
Confidence            468889999999999999999999 999999999999999999999999998754432   2346789999999999889


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----H
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----A  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~  152 (340)
                      ++.++|+|||||++|+|++|..||........... ....+... ....+...+..+.+|+.+||+.+|.+||+     +
T Consensus       178 ~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~  255 (285)
T cd05632         178 YTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREE-VDRRVLET-EEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGA  255 (285)
T ss_pred             CCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHH-HHHhhhcc-ccccCccCCHHHHHHHHHHccCCHhHcCCCcccCh
Confidence            99999999999999999999998865422211111 11111111 12234456678999999999999999999     7


Q ss_pred             HHHHHH
Q 019475          153 KSLVIS  158 (340)
Q Consensus       153 ~e~l~~  158 (340)
                      .+++.|
T Consensus       256 ~~l~~~  261 (285)
T cd05632         256 GEVKRH  261 (285)
T ss_pred             HHHHcC
Confidence            788776

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.95  E-value=1.2e-27  Score=211.03  Aligned_cols=158  Identities=20%  Similarity=0.276  Sum_probs=120.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+.+.++.||+.||+|||+++ ++|+||||+||+++.++.++|+|||+++......      ...++..|++||+..
T Consensus       127 ~~~~~~~~~~~~i~~al~~lH~~~-i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  205 (296)
T cd05095         127 ISYSTLIFMATQIASGMKYLSSLN-FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESIL  205 (296)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHh
Confidence            356789999999999999999999 9999999999999999999999999987653321      223356899999988


Q ss_pred             cCCCCCccchhhHHHHHHHHHh--CCCCCCcchhHHhhhhhhhHhhhc---cccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS--GKHIPPSHALDLIRSKNFLLLMDS---ALEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~--g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                      ++.++.++|||||||++|||++  |..||.......... ........   ....+.+..++..+.+|+.+||+.+|.+|
T Consensus       206 ~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  284 (296)
T cd05095         206 LGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIE-NTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKER  284 (296)
T ss_pred             cCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHH-HHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccC
Confidence            8889999999999999999998  555554322111110 00111100   11112234456889999999999999999


Q ss_pred             CCHHHHHHHHH
Q 019475          150 PNAKSLVISLM  160 (340)
Q Consensus       150 ps~~e~l~~l~  160 (340)
                      ||+.++++.|.
T Consensus       285 p~~~~i~~~l~  295 (296)
T cd05095         285 PSFQEIHATLL  295 (296)
T ss_pred             CCHHHHHHHHh
Confidence            99999998875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.95  E-value=5.7e-28  Score=213.05  Aligned_cols=155  Identities=20%  Similarity=0.285  Sum_probs=123.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.|++.||.|||+.+ ++||||||+||+++.++.++|+|||++......    ....+++.|+|||.+.+.
T Consensus       113 ~~~~~~~~i~~ql~~aL~~LH~~g-i~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  191 (296)
T cd06654         113 MDEGQIAAVCRECLQALEFLHSNQ-VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK  191 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcCC
Confidence            467789999999999999999999 999999999999999999999999998754432    234678899999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|||||||++|+|++|..||.........   .............+...+..+.+++.+||..+|++|||+.+++
T Consensus       192 ~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil  268 (296)
T cd06654         192 AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRAL---YLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELL  268 (296)
T ss_pred             CCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhH---HHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHh
Confidence            8899999999999999999999988654321110   0111111111122345667899999999999999999999999


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      .+-
T Consensus       269 ~~~  271 (296)
T cd06654         269 QHQ  271 (296)
T ss_pred             hCh
Confidence            863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.95  E-value=3.9e-28  Score=215.44  Aligned_cols=159  Identities=18%  Similarity=0.310  Sum_probs=120.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++.....    ....+++.|+|||.+.+ 
T Consensus       101 ~~~~~~~~~~~qi~~aL~~lH~~~-ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  179 (309)
T cd07872         101 MSMHNVKIFLYQILRGLAYCHRRK-VLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGS  179 (309)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEECCCCCEEECccccceecCCCccccccccccccccCCHHHhCC
Confidence            356788889999999999999999 999999999999999999999999998754322    23456889999998865 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh-----------Hh------hhccccC-------CCCchhH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL-----------LL------MDSALEG-------HFSNDEG  131 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~-----------~~------~~~~~~~-------~~~~~~~  131 (340)
                      ..++.++|||||||++|+|++|+.||..............           .+      .......       ......+
T Consensus       180 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (309)
T cd07872         180 SEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLD  259 (309)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCC
Confidence            4578999999999999999999998876432211100000           00      0000000       0112346


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      .++.+||.+||..||.+|||+.|+++|.+
T Consensus       260 ~~~~~li~~~L~~dp~~R~t~~e~l~h~~  288 (309)
T cd07872         260 TEGIELLTKFLQYESKKRISAEEAMKHAY  288 (309)
T ss_pred             HHHHHHHHHhccCChhhCCCHHHHhcChh
Confidence            78899999999999999999999998743

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.95  E-value=4.5e-28  Score=219.78  Aligned_cols=153  Identities=16%  Similarity=0.146  Sum_probs=116.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------------   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------------   58 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++++||+|||+++.....                      
T Consensus        98 l~~~~~~~~~~qi~~aL~~lH~~g-ivHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (363)
T cd05628          98 LTEEETQFYIAETVLAIDSIHQLG-FIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNM  176 (363)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEecCCCHHHeEECCCCCEEEeeccCccccccccccccccccccccccccccccc
Confidence            467788999999999999999999 999999999999999999999999998743211                      


Q ss_pred             -----------------CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc
Q 019475           59 -----------------KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA  121 (340)
Q Consensus        59 -----------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~  121 (340)
                                       ...+||+.|+|||++.+..++.++|||||||++|||++|..||........    ...+....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~~----~~~i~~~~  252 (363)
T cd05628         177 NSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQET----YKKVMNWK  252 (363)
T ss_pred             ccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHHH----HHHHHcCc
Confidence                             124689999999999998999999999999999999999999876432211    11111100


Q ss_pred             ccCCCC--chhHHHHHHHHHHhcc--cCCCCCCCHHHHHHH
Q 019475          122 LEGHFS--NDEGTELVRLASRCLQ--SEARERPNAKSLVIS  158 (340)
Q Consensus       122 ~~~~~~--~~~~~~~~~li~~cl~--~~p~~Rps~~e~l~~  158 (340)
                      ....++  ...++++.++|.+++.  .++..||+++++++|
T Consensus       253 ~~~~~p~~~~~s~~~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         253 ETLIFPPEVPISEKAKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             CcccCCCcCCCCHHHHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            011112  2346788899988654  233356899999987

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.95  E-value=8.1e-29  Score=220.69  Aligned_cols=151  Identities=21%  Similarity=0.291  Sum_probs=122.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....    ....|++.|+|||.+.+.
T Consensus        95 l~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  173 (318)
T cd05582          95 FTEEDVKFYLAELALALDHLHSLG-IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR  173 (318)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCC
Confidence            467889999999999999999999 999999999999999999999999998765433    234678999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----  151 (340)
                      .++.++|||||||++|+|++|+.||........    ...+...  ....+...+..+.+||.+||+.||++||+     
T Consensus       174 ~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~----~~~i~~~--~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~  247 (318)
T cd05582         174 GHTQSADWWSFGVLMFEMLTGSLPFQGKDRKET----MTMILKA--KLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDG  247 (318)
T ss_pred             CCCCccceeccceEeeeeccCCCCCCCCCHHHH----HHHHHcC--CCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCC
Confidence            899999999999999999999998865432111    1111111  12234556788999999999999999999     


Q ss_pred             HHHHHHH
Q 019475          152 AKSLVIS  158 (340)
Q Consensus       152 ~~e~l~~  158 (340)
                      +.+++.|
T Consensus       248 ~~~~~~~  254 (318)
T cd05582         248 VEEIKRH  254 (318)
T ss_pred             HHHHhCC
Confidence            5556654

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.95  E-value=1.4e-27  Score=206.54  Aligned_cols=155  Identities=20%  Similarity=0.332  Sum_probs=124.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.|++.||.|||+.+ ++|+||||+||+++.++.+||+|||.+.......     ...++..|++||++.+
T Consensus        99 ~~~~~~~~~~~~l~~aL~~lH~~~-i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  177 (260)
T cd05073          99 QPLPKLIDFSAQIAEGMAFIEQRN-YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINF  177 (260)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-ccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhcc
Confidence            367788999999999999999999 9999999999999999999999999987654321     1234567999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|+|||||++|++++ |..||........     ...+......+.+...+.++.+++.+||..+|++||++.+
T Consensus       178 ~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~  252 (260)
T cd05073         178 GSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEV-----IRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEY  252 (260)
T ss_pred             CCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHH-----HHHHhCCCCCCCcccCCHHHHHHHHHHcccCcccCcCHHH
Confidence            889999999999999999998 8877765422211     1122222222334456778999999999999999999999


Q ss_pred             HHHHHHh
Q 019475          155 LVISLMS  161 (340)
Q Consensus       155 ~l~~l~~  161 (340)
                      ++..|..
T Consensus       253 l~~~L~~  259 (260)
T cd05073         253 IQSVLDD  259 (260)
T ss_pred             HHHHHhc
Confidence            9998864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.95  E-value=9.1e-28  Score=210.26  Aligned_cols=154  Identities=19%  Similarity=0.215  Sum_probs=120.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~--   74 (340)
                      +++.++..++.||+.||.|||+.+ ++||||||+||+++.++.++|+|||++......    ....++..|+|||++.  
T Consensus       100 l~~~~~~~~~~qi~~~L~~LH~~~-i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  178 (282)
T cd06643         100 LTEPQIRVVCKQTLEALNYLHENK-IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCE  178 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCCCcccEEEccCCCEEEccccccccccccccccccccccccccCHhhcccc
Confidence            467889999999999999999999 999999999999999999999999998754322    3346788999999984  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                         +..++.++|||||||++|+|++|++||.......    ........ ......+...+..+.++|.+||..+|.+||
T Consensus       179 ~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  254 (282)
T cd06643         179 TSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMR----VLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARW  254 (282)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHH----HHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCc
Confidence               3457789999999999999999998875432111    11111111 111122344567899999999999999999


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      ++.++++|.
T Consensus       255 ~~~~il~~~  263 (282)
T cd06643         255 TTTQLLQHP  263 (282)
T ss_pred             CHHHHhcCC
Confidence            999998774

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-28  Score=222.85  Aligned_cols=150  Identities=17%  Similarity=0.300  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc-CCCCeEEecccCcccCC----CCCCcccCCccCCccccccCC--
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD-KDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMRTGR--   77 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~--   77 (340)
                      +.--+-.||++||.|||++. |||||||.+|+|++ -.|.+||+|||.++...    .+.++.||+.|||||++..++  
T Consensus       676 tm~fYtkQILeGLkYLHen~-IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RG  754 (1226)
T KOG4279|consen  676 TMNFYTKQILEGLKYLHENK-IVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRG  754 (1226)
T ss_pred             HHHHHHHHHHHHhhhhhhcc-eeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCcC
Confidence            34457799999999999999 99999999999997 56899999999988643    346788999999999998664  


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      |+.++|||||||++.||.||++||..-..+.-.   ..++.--...++.|...+.+.+.||.+|+..||.+||++.++++
T Consensus       755 YG~aADIWS~GCT~vEMATGrPPF~ElgspqAA---MFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  755 YGKAADIWSFGCTMVEMATGRPPFVELGSPQAA---MFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             CCchhhhhhccceeEeeccCCCCeeecCChhHh---hhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence            899999999999999999999998654322111   11111112345678889999999999999999999999999987


Q ss_pred             H
Q 019475          158 S  158 (340)
Q Consensus       158 ~  158 (340)
                      -
T Consensus       832 D  832 (1226)
T KOG4279|consen  832 D  832 (1226)
T ss_pred             C
Confidence            4

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.95  E-value=8.4e-28  Score=209.00  Aligned_cols=156  Identities=15%  Similarity=0.178  Sum_probs=114.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCcccccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~   75 (340)
                      ++...+.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||++......      ....++..|+|||++..
T Consensus        98 ~~~~~~~~~~qi~~~l~~lH~~~-ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  176 (269)
T cd05042          98 QKDVLQRMACEVASGLLWLHQAD-FIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEI  176 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcC-EecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhh
Confidence            45677899999999999999999 999999999999999999999999998653322      22234667999998753


Q ss_pred             -------CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCC
Q 019475           76 -------GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        76 -------~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~  147 (340)
                             ..++.++|||||||++|||++ |..||.........................+...+..+.+++..|| .||+
T Consensus       177 ~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~  255 (269)
T cd05042         177 RGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPE  255 (269)
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcc
Confidence                   346789999999999999999 6666654322111111111111111112233456678889999999 5999


Q ss_pred             CCCCHHHHHHHH
Q 019475          148 ERPNAKSLVISL  159 (340)
Q Consensus       148 ~Rps~~e~l~~l  159 (340)
                      +|||+.+|++.|
T Consensus       256 ~Rpt~~~v~~~l  267 (269)
T cd05042         256 TRPTAEEVHELL  267 (269)
T ss_pred             cccCHHHHHHHh
Confidence            999999999876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.95  E-value=1.7e-27  Score=207.14  Aligned_cols=159  Identities=21%  Similarity=0.290  Sum_probs=126.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.|++.||.|||+.+ ++|+||||+||+++.++.++|+|||+++......     ...++..|+|||.+.+
T Consensus       104 ~~~~~~~~~~~~l~~~l~~lH~~~-~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  182 (270)
T cd05056         104 LDLASLILYSYQLSTALAYLESKR-FVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINF  182 (270)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccccChheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhcc
Confidence            467889999999999999999999 9999999999999999999999999987654332     1123467999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|++++ |..||........     ...+........+..++..+.+++.+||..+|.+|||+.+
T Consensus       183 ~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~  257 (270)
T cd05056         183 RRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDV-----IGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTE  257 (270)
T ss_pred             CCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHH-----HHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            889999999999999999986 9888765432211     1111111122334566788999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      ++..|..+...
T Consensus       258 ~~~~l~~~~~~  268 (270)
T cd05056         258 LKAQLSDILQE  268 (270)
T ss_pred             HHHHHHHHHhc
Confidence            99999886553

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.3e-27  Score=206.82  Aligned_cols=155  Identities=24%  Similarity=0.351  Sum_probs=124.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||.++......     ....+..|+|||.+.+
T Consensus       100 ~~~~~~~~~~~~i~~al~~lh~~~-i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  178 (261)
T cd05034         100 LRLPQLVDMAAQIAEGMAYLESRN-YIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANY  178 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhcc
Confidence            467889999999999999999999 9999999999999999999999999987654321     2233568999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|++++ |+.||......     ..............+...+..+.+++.+||..+|.+||++.+
T Consensus       179 ~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~  253 (261)
T cd05034         179 GRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNR-----EVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEY  253 (261)
T ss_pred             CCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHH
Confidence            889999999999999999998 88877553221     111112222222334455778999999999999999999999


Q ss_pred             HHHHHHh
Q 019475          155 LVISLMS  161 (340)
Q Consensus       155 ~l~~l~~  161 (340)
                      +.+.|+.
T Consensus       254 l~~~l~~  260 (261)
T cd05034         254 LQSFLED  260 (261)
T ss_pred             HHHHHhc
Confidence            9988764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.95  E-value=4.7e-28  Score=212.41  Aligned_cols=157  Identities=19%  Similarity=0.314  Sum_probs=124.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.|++.||.|||+.+ ++||||||+||+++.++.++|+|||++......   ....|+..|+|||++.+..
T Consensus        99 l~~~~~~~~~~qi~~~l~~lH~~~-iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~  177 (285)
T cd05630          99 FEEGRAVFYAAEICCGLEDLHQER-IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNER  177 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccCCCCCccccChHHHcCCC
Confidence            456788999999999999999999 999999999999999999999999998765433   2346789999999999889


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----H
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----A  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~  152 (340)
                      ++.++|||||||++|+|++|..||....... .......... ......+...+.++.+|+.+||+.||++|||     +
T Consensus       178 ~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~  255 (285)
T cd05630         178 YTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREEVERLVK-EVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGA  255 (285)
T ss_pred             CCCccccHHHHHHHHHHHhCCCCCCCCCccc-hHHHHHhhhh-hhhhhcCccCCHHHHHHHHHHhhcCHHHccCCCCCch
Confidence            9999999999999999999999886532110 0011111111 1112234456678999999999999999999     8


Q ss_pred             HHHHHHHH
Q 019475          153 KSLVISLM  160 (340)
Q Consensus       153 ~e~l~~l~  160 (340)
                      .++++|-+
T Consensus       256 ~~~~~h~~  263 (285)
T cd05630         256 REVKEHPL  263 (285)
T ss_pred             HHHHcChh
Confidence            99998754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.95  E-value=6.8e-28  Score=207.90  Aligned_cols=151  Identities=19%  Similarity=0.275  Sum_probs=122.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~   77 (340)
                      +....+.++.||+.||.|||+++ ++|+||||+||+++.++.++++|||.+......    ....+++.|+|||++.+..
T Consensus        98 ~~~~~~~~~~~i~~al~~lH~~~-i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  176 (255)
T cd08219          98 PEDTILQWFVQMCLGVQHIHEKR-VLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMP  176 (255)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhCC-cccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHccCC
Confidence            56778899999999999999999 999999999999999999999999998765432    2346788999999999888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++|+||||+++|+|++|..||........     ...+........+...+..+.+++.+||..+|.+|||+.+++.
T Consensus       177 ~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  251 (255)
T cd08219         177 YNNKSDIWSLGCILYELCTLKHPFQANSWKNL-----ILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILS  251 (255)
T ss_pred             cCchhhhhhhchhheehhhccCCCCCCCHHHH-----HHHHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhh
Confidence            99999999999999999999998865432211     1111111222334556778999999999999999999999976


Q ss_pred             H
Q 019475          158 S  158 (340)
Q Consensus       158 ~  158 (340)
                      .
T Consensus       252 ~  252 (255)
T cd08219         252 R  252 (255)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=1.3e-27  Score=206.50  Aligned_cols=151  Identities=23%  Similarity=0.339  Sum_probs=118.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-------CeEEecccCcccCCCCCCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-------NPRLSSFGLMKNSRDGKSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-------~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~   73 (340)
                      +++..++.++.||+.||.|||+++ ++||||||+||+++.++       .+||+|||++..........++..|++||++
T Consensus        98 ~~~~~~~~~~~~i~~~l~~LH~~~-i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~y~aPE~~  176 (259)
T cd05037          98 VSLHWKLDVAKQLASALHYLEDKK-LVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIPWIAPECI  176 (259)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-eecccCccceEEEecCccccCCceeEEeCCCCcccccccccccccCCCccChhhh
Confidence            467889999999999999999999 99999999999999888       7999999999876655556677889999999


Q ss_pred             ccC--CCCCccchhhHHHHHHHHHhC-CCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           74 RTG--RVTPESVVYSFGTMLLDLLSG-KHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        74 ~~~--~~~~~~Di~slG~~~~el~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      .+.  .++.++|||||||++|+|++| ..|+......  ..   ......  ....+......+.+++.+||..+|.+||
T Consensus       177 ~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~--~~---~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp  249 (259)
T cd05037         177 RNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSS--EK---ERFYQD--QHRLPMPDCAELANLINQCWTYDPTKRP  249 (259)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCch--hH---HHHHhc--CCCCCCCCchHHHHHHHHHhccChhhCC
Confidence            876  789999999999999999996 4444332111  10   111111  1111222237899999999999999999


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      |+.++++.|
T Consensus       250 t~~~il~~l  258 (259)
T cd05037         250 SFRAILRDL  258 (259)
T ss_pred             CHHHHHHhc
Confidence            999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.9e-27  Score=207.88  Aligned_cols=159  Identities=17%  Similarity=0.220  Sum_probs=127.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC------cccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS------YSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~   74 (340)
                      +++..++.++.||+.||+|||+.+ ++||||||+||+++.++.+||+|||.++.......      ..++..|++||.+.
T Consensus       106 ~~~~~~~~~~~qi~~~l~~LH~~~-i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (279)
T cd05057         106 IGSQYLLNWCVQIAKGMSYLEEKR-LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESIL  184 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhh
Confidence            467889999999999999999999 99999999999999999999999999886553321      11246799999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|+||||+++||+++ |..||.......     +...+........+...+..+.+++.+||..+|+.||++.
T Consensus       185 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~  259 (279)
T cd05057         185 HRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVE-----IPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFK  259 (279)
T ss_pred             cCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHH-----HHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHH
Confidence            8889999999999999999998 888876543222     1222222222233444567899999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ++++.|..+.+.
T Consensus       260 ~l~~~l~~~~~~  271 (279)
T cd05057         260 ELINEFSKMARD  271 (279)
T ss_pred             HHHHHHHHHHhC
Confidence            999999887553

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=8.8e-28  Score=210.38  Aligned_cols=161  Identities=23%  Similarity=0.363  Sum_probs=126.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||.+.......       ...++..|++||.+
T Consensus       106 ~~~~~~~~~~~~l~~aL~~lH~~~-i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~  184 (284)
T cd05038         106 INLKRLLLFSSQICKGMDYLGSQR-YIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECL  184 (284)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHH
Confidence            467889999999999999999999 9999999999999999999999999988765321       12234569999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh----------hhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR----------SKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      .+..++.++||||||+++|||++|..|+.........          .......+........+..++..+.+++.+||.
T Consensus       185 ~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  264 (284)
T cd05038         185 RTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWE  264 (284)
T ss_pred             ccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhc
Confidence            8888999999999999999999999876543221111          111222222222223344556789999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhh
Q 019475          144 SEARERPNAKSLVISLMSL  162 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~  162 (340)
                      .+|.+|||+.++++.|..+
T Consensus       265 ~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         265 AEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             cChhhCCCHHHHHHHHhhc
Confidence            9999999999999998765

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.95  E-value=5.1e-28  Score=212.00  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=118.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+||+++.++.++|+|||+++.....    ....++..|+|||++.+.
T Consensus        96 ~~~~~~~~~~~qi~~al~~LH~~~-i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  174 (284)
T cd07839          96 IDPEIVKSFMFQLLKGLAFCHSHN-VLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA  174 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCC
Confidence            467889999999999999999999 999999999999999999999999998865432    233567899999998765


Q ss_pred             C-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh---------------Hhhhcccc---------CCCCchhH
Q 019475           77 R-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL---------------LLMDSALE---------GHFSNDEG  131 (340)
Q Consensus        77 ~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~~---------~~~~~~~~  131 (340)
                      . ++.++|||||||++|+|++|..|+..............               ...+....         ....+..+
T Consensus       175 ~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (284)
T cd07839         175 KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLN  254 (284)
T ss_pred             cccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCC
Confidence            4 68999999999999999999887543211110000000               00000000         01112356


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +++.++|.+||..||.+|||+.+++.|
T Consensus       255 ~~~~~li~~~l~~~P~~R~t~~~il~h  281 (284)
T cd07839         255 STGRDLLQNLLVCNPVQRISAEEALQH  281 (284)
T ss_pred             HHHHHHHHHHhcCChhhcCCHHHHhcC
Confidence            788999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.95  E-value=1.4e-27  Score=207.55  Aligned_cols=156  Identities=22%  Similarity=0.287  Sum_probs=123.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC---c---c---cCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS---Y---S---TNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---~---~---~~~~y~aPE   71 (340)
                      +++.+++.++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||++........   .   .   .+..|++||
T Consensus       103 ~~~~~~~~i~~~l~~al~~lH~~g-~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE  181 (269)
T cd05065         103 FTVIQLVGMLRGIAAGMKYLSEMN-YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPE  181 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHh
Confidence            467889999999999999999999 99999999999999999999999999875433211   1   1   134699999


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           72 YMRTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        72 ~~~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      .+.+..++.++|||||||++||+++ |..||.......     ....+........+..++..+.+++.+||..+|.+||
T Consensus       182 ~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  256 (269)
T cd05065         182 AIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQD-----VINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARP  256 (269)
T ss_pred             HhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHH-----HHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhCc
Confidence            9998899999999999999999886 887775532221     1111112222233445677899999999999999999


Q ss_pred             CHHHHHHHHHhh
Q 019475          151 NAKSLVISLMSL  162 (340)
Q Consensus       151 s~~e~l~~l~~~  162 (340)
                      ++.+++..|+.+
T Consensus       257 ~~~~i~~~l~~~  268 (269)
T cd05065         257 KFGQIVSTLDKM  268 (269)
T ss_pred             CHHHHHHHHHhh
Confidence            999999988754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.95  E-value=1.3e-27  Score=218.21  Aligned_cols=157  Identities=20%  Similarity=0.318  Sum_probs=126.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |+|.++++|+.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++.....      ....++..|++||.+.
T Consensus       236 l~~~~~~~~~~qi~~aL~~LH~~~-ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~  314 (401)
T cd05107         236 LSYMDLVGFSYQVANGMEFLASKN-CVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIF  314 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-cCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhc
Confidence            467889999999999999999999 999999999999999999999999998754321      1234567899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||.......    .....+........+...+..+.+|+.+||..+|.+||++.
T Consensus       315 ~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~  390 (401)
T cd05107         315 NNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNE----QFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFS  390 (401)
T ss_pred             CCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchH----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHH
Confidence            8889999999999999999998 777765432111    11122222222334455678899999999999999999999


Q ss_pred             HHHHHHHhh
Q 019475          154 SLVISLMSL  162 (340)
Q Consensus       154 e~l~~l~~~  162 (340)
                      +|++.|+.+
T Consensus       391 ell~~L~~~  399 (401)
T cd05107         391 QLVHLVGDL  399 (401)
T ss_pred             HHHHHHHHH
Confidence            999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.95  E-value=1.6e-27  Score=209.34  Aligned_cols=155  Identities=18%  Similarity=0.242  Sum_probs=121.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCcccccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~   75 (340)
                      ++..++.++.||+.||.|||+++ ++||||||+||+++.++.++|+|||+++.....      ....++..|++||.+.+
T Consensus       117 ~~~~~~~~~~~l~~~l~~lH~~~-i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~  195 (288)
T cd05061         117 TLQEMIQMAAEIADGMAYLNAKK-FVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKD  195 (288)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-CcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhcc
Confidence            45677889999999999999999 999999999999999999999999998754322      22234677999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||++ |..||.......     ....+........+...+..+.+++.+||+.+|++|||+.+
T Consensus       196 ~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  270 (288)
T cd05061         196 GVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQ-----VLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLE  270 (288)
T ss_pred             CCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            889999999999999999998 566664432211     11111111112234455678999999999999999999999


Q ss_pred             HHHHHHhh
Q 019475          155 LVISLMSL  162 (340)
Q Consensus       155 ~l~~l~~~  162 (340)
                      +++.|...
T Consensus       271 ll~~l~~~  278 (288)
T cd05061         271 IVNLLKDD  278 (288)
T ss_pred             HHHHHHhh
Confidence            99888765

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=1.1e-27  Score=207.99  Aligned_cols=152  Identities=18%  Similarity=0.372  Sum_probs=122.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------CCcccCCccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------KSYSTNLAFTPP   70 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------~~~~~~~~y~aP   70 (340)
                      +++..+..++.|++.||.|||+++ ++||||+|+||+++.++.++|+|||.++.....          ....++..|++|
T Consensus       103 l~~~~~~~~~~~l~~~l~~lH~~~-ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p  181 (267)
T cd06628         103 FEETLVRNFVRQILKGLNYLHNRG-IIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAP  181 (267)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcC-cccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccCh
Confidence            456778899999999999999999 999999999999999999999999998765421          123467889999


Q ss_pred             cccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           71 EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        71 E~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      |.+.+..++.++|+|||||++|+|++|+.||......    ....... .......+...+..+.++|.+||+.+|.+||
T Consensus       182 e~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  256 (267)
T cd06628         182 EVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQL----QAIFKIG-ENASPEIPSNISSEAIDFLEKTFEIDHNKRP  256 (267)
T ss_pred             hHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHH----HHHHHHh-ccCCCcCCcccCHHHHHHHHHHccCCchhCc
Confidence            9999888999999999999999999999888653211    1111111 1222334556678899999999999999999


Q ss_pred             CHHHHHHH
Q 019475          151 NAKSLVIS  158 (340)
Q Consensus       151 s~~e~l~~  158 (340)
                      ++.+++++
T Consensus       257 ~~~~il~~  264 (267)
T cd06628         257 TAAELLKH  264 (267)
T ss_pred             CHHHHhhC
Confidence            99999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.95  E-value=2.7e-27  Score=210.84  Aligned_cols=160  Identities=19%  Similarity=0.260  Sum_probs=128.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccc---cCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMR---TGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~   77 (340)
                      ++|.++..++.||+.||.|||+++ ++||||+|+||+++.++.++|+|||++..........++..|++||.+.   ++.
T Consensus       122 l~~~~~~~i~~~i~~~l~~lH~~~-i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  200 (317)
T cd06635         122 LQEVEIAAITHGALQGLAYLHSHN-MIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILAMDEGQ  200 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCcccEEECCCCCEEEecCCCccccCCcccccCCccccChhhhhcCCCCC
Confidence            467889999999999999999999 9999999999999999999999999988776666677889999999974   456


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++|||||||++|+|++|..||.......    ....+.........+...+..+.+++.+||+.+|.+||++.++++
T Consensus       201 ~~~~~Dv~slGvil~el~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  276 (317)
T cd06635         201 YDGKVDVWSLGITCIELAERKPPLFNMNAMS----ALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLK  276 (317)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCCccHHH----HHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHh
Confidence            8889999999999999999998875532111    111111111111223345678999999999999999999999999


Q ss_pred             HHHhhhhh
Q 019475          158 SLMSLQKE  165 (340)
Q Consensus       158 ~l~~~~~~  165 (340)
                      ++......
T Consensus       277 ~~~~~~~~  284 (317)
T cd06635         277 HMFVLRER  284 (317)
T ss_pred             ChhhhccC
Confidence            87664433

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=4.7e-28  Score=219.84  Aligned_cols=153  Identities=18%  Similarity=0.156  Sum_probs=120.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------------   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------------   58 (340)
                      |+..++..++.||+.||+|||+++ |+||||||+|||++.++.++|+|||++......                      
T Consensus        98 l~~~~~~~~~~qi~~aL~~lH~~~-ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (364)
T cd05599          98 FTEEETRFYIAETILAIDSIHKLG-YIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFIS  176 (364)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeccCCHHHeEECCCCCEEEeecccceecccccccccccccccccccccccccc
Confidence            467788899999999999999999 999999999999999999999999998653211                      


Q ss_pred             --------------------CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh
Q 019475           59 --------------------KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM  118 (340)
Q Consensus        59 --------------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~  118 (340)
                                          .+.+||+.|+|||++.+..++.++|||||||++|||++|..||........    ...+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~----~~~i~  252 (364)
T cd05599         177 KPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQET----YRKII  252 (364)
T ss_pred             ccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHH----HHHHH
Confidence                                023589999999999988999999999999999999999998866432211    11111


Q ss_pred             hc--cccCCCCchhHHHHHHHHHHhcccCCCCCCC---HHHHHHHH
Q 019475          119 DS--ALEGHFSNDEGTELVRLASRCLQSEARERPN---AKSLVISL  159 (340)
Q Consensus       119 ~~--~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps---~~e~l~~l  159 (340)
                      ..  ..........++.+.+||.+|+. +|.+|++   +.+++.|.
T Consensus       253 ~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~  297 (364)
T cd05599         253 NWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHP  297 (364)
T ss_pred             cCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCC
Confidence            11  11111112356789999999996 9999997   99998874

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=7.2e-28  Score=226.46  Aligned_cols=156  Identities=20%  Similarity=0.229  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCccccccCCC
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~   78 (340)
                      .+...|+.||+.||.|||+++ ||||||||+|||++.++.+||+|||+++.....     ....||..|+|||++.+..+
T Consensus       267 ~~~~~i~~ql~~aL~yLH~~g-IiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  345 (501)
T PHA03210        267 KQTRAIMKQLLCAVEYIHDKK-LIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGY  345 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCC
Confidence            456789999999999999999 999999999999999999999999999865432     23468999999999999999


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHH--hhhhhh------------------hHhhhcc-cc---CCC-----Cch
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDL--IRSKNF------------------LLLMDSA-LE---GHF-----SND  129 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~--~~~~~~------------------~~~~~~~-~~---~~~-----~~~  129 (340)
                      +.++|||||||++|||++|..++.......  ......                  ...+... +.   ...     ...
T Consensus       346 ~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  425 (501)
T PHA03210        346 CEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLG  425 (501)
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcC
Confidence            999999999999999999985543321100  000000                  0000000 00   000     012


Q ss_pred             hHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          130 EGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       130 ~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      .+.++.++|.+||..||.+|||+.|++.|..
T Consensus       426 ~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~  456 (501)
T PHA03210        426 LPADFEYPLVKMLTFDWHLRPGAAELLALPL  456 (501)
T ss_pred             CChHHHHHHHHHhccCcccCcCHHHHhhChh
Confidence            3456788899999999999999999998754

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.95  E-value=2.5e-28  Score=218.65  Aligned_cols=153  Identities=17%  Similarity=0.202  Sum_probs=120.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMR-   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~-   74 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||++.......     ...+|+.|+|||++. 
T Consensus        99 l~~~~~~~~~~qi~~aL~~lH~~~-i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~  177 (330)
T cd05601          99 FDEDMAQFYLAELVLAIHSVHQMG-YVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTT  177 (330)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEcccCchHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhcc
Confidence            466778889999999999999999 9999999999999999999999999998654332     236789999999986 


Q ss_pred             -----cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCC
Q 019475           75 -----TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        75 -----~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~  147 (340)
                           +..++.++|||||||++|+|++|+.||........    ...+....  ...+.....+..+.+|+.+||. +|.
T Consensus       178 ~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~  252 (330)
T cd05601         178 MNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKT----YNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQK  252 (330)
T ss_pred             ccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHH----HHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-Chh
Confidence                 45678899999999999999999998865432211    11111111  1111122457889999999998 999


Q ss_pred             CCCCHHHHHHHH
Q 019475          148 ERPNAKSLVISL  159 (340)
Q Consensus       148 ~Rps~~e~l~~l  159 (340)
                      +|||+.+++.|-
T Consensus       253 ~R~t~~~l~~h~  264 (330)
T cd05601         253 ERLGYEGLCCHP  264 (330)
T ss_pred             hCCCHHHHhCCC
Confidence            999999998774

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.95  E-value=2.8e-27  Score=209.73  Aligned_cols=155  Identities=19%  Similarity=0.239  Sum_probs=123.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccc---cCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMR---TGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~   77 (340)
                      +++.++..++.||+.||.|||+.+ ++|+||+|+||+++.++.++|+|||++..........++..|+|||++.   ...
T Consensus       112 l~~~~~~~~~~ql~~~L~~LH~~~-i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  190 (307)
T cd06607         112 LQEVEIAAICHGALQGLAYLHSHE-RIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVILAMDEGQ  190 (307)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceecCCCcccEEECCCCCEEEeecCcceecCCCCCccCCccccCceeeeccCCCC
Confidence            467889999999999999999999 9999999999999999999999999998776666677888999999884   356


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++||||||+++|+|++|..||........    ...+.........+...+..+.+++.+||..+|++||++.+++.
T Consensus       191 ~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  266 (307)
T cd06607         191 YDGKVDVWSLGITCIELAERKPPLFNMNAMSA----LYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLK  266 (307)
T ss_pred             CCcccchHHHHHHHHHHHcCCCCCCCccHHHH----HHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            78899999999999999999988754321111    01111111111112345678999999999999999999999998


Q ss_pred             HHH
Q 019475          158 SLM  160 (340)
Q Consensus       158 ~l~  160 (340)
                      +.+
T Consensus       267 ~~~  269 (307)
T cd06607         267 HRF  269 (307)
T ss_pred             Chh
Confidence            743

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.95  E-value=1.6e-27  Score=210.12  Aligned_cols=155  Identities=19%  Similarity=0.280  Sum_probs=124.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.|++.||.|||+++ ++||||||+||+++.++.++|+|||++......    ....++..|+|||.+.+.
T Consensus       112 l~~~~~~~i~~~l~~al~~LH~~~-i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  190 (296)
T cd06655         112 MDEAQIAAVCRECLQALEFLHANQ-VIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK  190 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCC
Confidence            578899999999999999999999 999999999999999999999999998765433    233578899999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh-ccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD-SALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|||||||++|+|++|..||........    ...... .......+...+..+.++|.+||..+|.+|||+.++
T Consensus       191 ~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~i  266 (296)
T cd06655         191 AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA----LYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKEL  266 (296)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHH
Confidence            899999999999999999999988865422111    111111 111112334566789999999999999999999999


Q ss_pred             HHHHH
Q 019475          156 VISLM  160 (340)
Q Consensus       156 l~~l~  160 (340)
                      +.|-+
T Consensus       267 l~~~~  271 (296)
T cd06655         267 LQHPF  271 (296)
T ss_pred             hhChH
Confidence            98743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.95  E-value=2.3e-28  Score=224.62  Aligned_cols=160  Identities=21%  Similarity=0.298  Sum_probs=140.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----Cccc--CCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYST--NLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~--~~~y~aPE~~   73 (340)
                      ++|.+...+++.|+.|+.||-+.+ +|||||..+|||++.+-.+|++|||+++...+..     +.-|  ...|+|||.+
T Consensus       728 ftviQLVgMLrGIAsGMkYLsdm~-YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAI  806 (996)
T KOG0196|consen  728 FTVIQLVGMLRGIASGMKYLSDMN-YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAI  806 (996)
T ss_pred             eEeehHHHHHHHHHHHhHHHhhcC-chhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHh
Confidence            356788999999999999999999 9999999999999999999999999999765442     1112  3689999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      ..++++.+|||||||+|+||.++ |.+|++..     .+......++..++.+.|.+++..+.+|+..||++|-.+||.+
T Consensus       807 a~RKFTsASDVWSyGIVmWEVmSyGERPYWdm-----SNQdVIkaIe~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F  881 (996)
T KOG0196|consen  807 AYRKFTSASDVWSYGIVMWEVMSYGERPYWDM-----SNQDVIKAIEQGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKF  881 (996)
T ss_pred             hhcccCchhhccccceEEEEecccCCCccccc-----chHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCH
Confidence            99999999999999999999876 77777664     4566677778888888899999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhc
Q 019475          153 KSLVISLMSLQKEA  166 (340)
Q Consensus       153 ~e~l~~l~~~~~~~  166 (340)
                      .+|+.+|.++....
T Consensus       882 ~qiV~~lDklIrnP  895 (996)
T KOG0196|consen  882 AQIVSTLDKLIRNP  895 (996)
T ss_pred             HHHHHHHHHHhcCc
Confidence            99999999987764

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.4e-27  Score=208.16  Aligned_cols=153  Identities=19%  Similarity=0.333  Sum_probs=123.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.|++.||.|||+++ ++|+||+|+||+++.++.++|+|||+++.....    ....++..|++||++.+.
T Consensus        95 ~~~~~~~~~~~ql~~~l~~lh~~~-i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  173 (274)
T cd06609          95 LDETYIAFILREVLLGLEYLHEEG-KIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQS  173 (274)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCCccccChhhhccC
Confidence            478889999999999999999999 999999999999999999999999998765543    234677889999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCch-hHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSND-EGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|||||||++|+|++|..||......     .....+........+.. .+..+.+++.+||..+|++|||++++
T Consensus       174 ~~~~~sDv~slG~il~~l~tg~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~i  248 (274)
T cd06609         174 GYDEKADIWSLGITAIELAKGEPPLSDLHPM-----RVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKEL  248 (274)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCcccCchH-----HHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHH
Confidence            8999999999999999999999887543211     11111111122222222 56789999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      ++|-
T Consensus       249 l~~~  252 (274)
T cd06609         249 LKHK  252 (274)
T ss_pred             hhCh
Confidence            8863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.95  E-value=1e-27  Score=218.72  Aligned_cols=154  Identities=21%  Similarity=0.241  Sum_probs=118.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC-----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-----------------------   57 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-----------------------   57 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.++++||+|||+++....                       
T Consensus        98 ~~e~~~~~~~~qi~~aL~~LH~~g-ivHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (381)
T cd05626          98 FPEVLARFYIAELTLAIESVHKMG-FIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDL  176 (381)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccc
Confidence            356677889999999999999999 99999999999999999999999998753210                       


Q ss_pred             ----------------------------CCCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh
Q 019475           58 ----------------------------GKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI  109 (340)
Q Consensus        58 ----------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~  109 (340)
                                                  ..+..||+.|+|||++.+..++.++|||||||++|||++|..||........
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~  256 (381)
T cd05626         177 WDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTET  256 (381)
T ss_pred             cccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHH
Confidence                                        0124689999999999988899999999999999999999999866432211


Q ss_pred             hhhhhhHhhh--ccccCCCCchhHHHHHHHHHH--hcccCCCCCCCHHHHHHHH
Q 019475          110 RSKNFLLLMD--SALEGHFSNDEGTELVRLASR--CLQSEARERPNAKSLVISL  159 (340)
Q Consensus       110 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~--cl~~~p~~Rps~~e~l~~l  159 (340)
                      .    ..+..  .....+.....+.++.+||.+  |+..++..||++.+++.|-
T Consensus       257 ~----~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp  306 (381)
T cd05626         257 Q----LKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHP  306 (381)
T ss_pred             H----HHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCc
Confidence            1    11111  111111222457789999988  4455666699999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.95  E-value=8.2e-28  Score=218.19  Aligned_cols=155  Identities=17%  Similarity=0.223  Sum_probs=120.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      ++......++.||+.||+|||+++ |+||||||+|||++.++.+||+|||++......     .+..||+.|+|||++.+
T Consensus       139 ~~~~~~~~~~~qil~aL~~LH~~~-IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~  217 (370)
T cd05621         139 VPEKWAKFYTAEVVLALDAIHSMG-LIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKS  217 (370)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhc
Confidence            356678889999999999999999 999999999999999999999999999865432     24568999999999875


Q ss_pred             C----CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCc--hhHHHHHHHHHHhcccCCCC-
Q 019475           76 G----RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSN--DEGTELVRLASRCLQSEARE-  148 (340)
Q Consensus        76 ~----~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~cl~~~p~~-  148 (340)
                      .    .++.++|||||||++|+|++|..||.......    ....+........++.  ..+..+.+++.+||..++.+ 
T Consensus       218 ~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~----~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~  293 (370)
T cd05621         218 QGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVG----TYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRL  293 (370)
T ss_pred             cCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHH----HHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhcc
Confidence            4    37889999999999999999999987653221    1222222211112222  45778999999999865544 


Q ss_pred             -CCCHHHHHHHHH
Q 019475          149 -RPNAKSLVISLM  160 (340)
Q Consensus       149 -Rps~~e~l~~l~  160 (340)
                       |+++.++++|.+
T Consensus       294 ~R~~~~e~l~hp~  306 (370)
T cd05621         294 GRNGVEEIKQHPF  306 (370)
T ss_pred             CCCCHHHHhcCcc
Confidence             889999999844

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.95  E-value=1e-27  Score=210.22  Aligned_cols=157  Identities=18%  Similarity=0.210  Sum_probs=118.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||++......    ....+++.|+|||++.+.
T Consensus        98 ~~~~~~~~~~~qi~~~L~~lH~~~-i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  176 (285)
T cd07861          98 MDAELVKSYLYQILQGILFCHSRR-VLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGS  176 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeecCCCHHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChHHhcCC
Confidence            467788999999999999999999 999999999999999999999999998754322    223567889999988754


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh--------------------hHhhhcccc---CCCCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF--------------------LLLMDSALE---GHFSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~---~~~~~~~~~  132 (340)
                       .++.++|||||||++|+|++|++||.............                    .........   .......++
T Consensus       177 ~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
T cd07861         177 PRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDE  256 (285)
T ss_pred             CCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCH
Confidence             46889999999999999999998886432111000000                    000000000   001223567


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ++.++|.+||..||.+|||+.+++.|
T Consensus       257 ~~~~li~~~l~~dP~~Rpt~~~ll~~  282 (285)
T cd07861         257 DGLDLLEKMLIYDPAKRISAKKALNH  282 (285)
T ss_pred             HHHHHHHHHhcCChhhCCCHHHHhcC
Confidence            88999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.95  E-value=2.5e-27  Score=206.63  Aligned_cols=151  Identities=23%  Similarity=0.328  Sum_probs=117.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-------CeEEecccCcccCCCCCCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-------NPRLSSFGLMKNSRDGKSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-------~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~   73 (340)
                      +++..++.++.||+.||+|||+++ ++||||||+|||++..+       .+|++|||.+..........++..|+|||.+
T Consensus       114 ~~~~~~~~i~~qi~~~l~~lH~~~-iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~  192 (274)
T cd05076         114 VPVAWKITVAQQLASALSYLEDKN-LVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECV  192 (274)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCC-ccCCCCCcccEEEeccCcccCccceeeecCCccccccccccccccCCcccCchhh
Confidence            467889999999999999999999 99999999999997654       3799999998765544455678889999988


Q ss_pred             cc-CCCCCccchhhHHHHHHHHH-hCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 RT-GRVTPESVVYSFGTMLLDLL-SGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~~-~~~~~~~Di~slG~~~~el~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+ ..++.++|||||||++||++ +|..||........     .......  ...+......+.++|.+||..+|++|||
T Consensus       193 ~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rps  265 (274)
T cd05076         193 PGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEK-----ERFYEKK--HRLPEPSCKELATLISQCLTYEPTQRPS  265 (274)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHH-----HHHHHhc--cCCCCCCChHHHHHHHHHcccChhhCcC
Confidence            75 45889999999999999995 67777654322111     1111111  1122333467999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++.|
T Consensus       266 ~~~il~~L  273 (274)
T cd05076         266 FRTILRDL  273 (274)
T ss_pred             HHHHHHhh
Confidence            99999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.95  E-value=8.3e-28  Score=207.73  Aligned_cols=156  Identities=24%  Similarity=0.378  Sum_probs=121.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----CCCCcccCCccCCccccc-c
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMR-T   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~-~   75 (340)
                      +++.+++.++.||++||.+||+++ ++|+||||+||+++.++.++|+|||.+....    ......++..|+|||++. +
T Consensus        95 ~~~~~~~~~~~qi~~~L~~Lh~~~-i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  173 (260)
T PF00069_consen   95 LSEEEILKIAYQILEALAYLHSKG-IVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQG  173 (260)
T ss_dssp             BBHHHHHHHHHHHHHHHHHHHHTT-EEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTT
T ss_pred             cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            467889999999999999999999 9999999999999999999999999987531    123456788999999998 7


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ...+.++||||||+++|+|++|..|+......... ...........  ...........+.+++.+||+.||++|||+.
T Consensus       174 ~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~  252 (260)
T PF00069_consen  174 KKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQL-EIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAE  252 (260)
T ss_dssp             SSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHH-HHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHH
T ss_pred             ccccccccccccccccccccccccccccccchhhh-hhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHH
Confidence            88999999999999999999999888764111111 11111111111  0111112247899999999999999999999


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      ++++|
T Consensus       253 ~l~~~  257 (260)
T PF00069_consen  253 ELLKH  257 (260)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            99876

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.95  E-value=2.9e-27  Score=205.62  Aligned_cols=157  Identities=17%  Similarity=0.179  Sum_probs=115.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCcccccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~   75 (340)
                      ++..+..++.|++.||.|||+.+ ++|+||||+||+++.+++++|+|||.++.....      ....++..|+|||++.+
T Consensus        98 ~~~~~~~~~~qi~~al~~lH~~~-i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  176 (269)
T cd05087          98 DPTTLQRMACEIALGLLHLHKNN-FIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDE  176 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCC-EeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhcc
Confidence            45567789999999999999999 999999999999999999999999998754322      12345678999999864


Q ss_pred             C-------CCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCC
Q 019475           76 G-------RVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        76 ~-------~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~  147 (340)
                      .       .++.++||||||+++|||++ |..||.............................++.+.+++.+|| .+|+
T Consensus       177 ~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~  255 (269)
T cd05087         177 VHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPE  255 (269)
T ss_pred             ccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcc
Confidence            2       35789999999999999996 9888765322211111111100011111122245677899999999 6899


Q ss_pred             CCCCHHHHHHHHH
Q 019475          148 ERPNAKSLVISLM  160 (340)
Q Consensus       148 ~Rps~~e~l~~l~  160 (340)
                      +|||+++|+..|.
T Consensus       256 ~Rpt~~~l~~~l~  268 (269)
T cd05087         256 QRPSAEEVHLLLS  268 (269)
T ss_pred             cCCCHHHHHHHhc
Confidence            9999999997763

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.95  E-value=1.3e-27  Score=210.40  Aligned_cols=154  Identities=21%  Similarity=0.268  Sum_probs=121.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ ++||||||+||+++.++.++|+|||++......    ....++..|+|||.+.+.
T Consensus       115 l~~~~~~~~~~qi~~~l~~LH~~~-ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  193 (292)
T cd06658         115 MNEEQIATVCLSVLRALSYLHNQG-VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRL  193 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHccC
Confidence            467889999999999999999999 999999999999999999999999998754322    234678899999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++||||||+++|||++|..||........ ............  ......+..+.+++.+||..+|.+|||+.+++
T Consensus       194 ~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il  270 (292)
T cd06658         194 PYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQA-MRRIRDNLPPRV--KDSHKVSSVLRGFLDLMLVREPSQRATAQELL  270 (292)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhcCCCcc--ccccccCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            899999999999999999999988765322111 001111111111  11223566799999999999999999999999


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      ++
T Consensus       271 ~~  272 (292)
T cd06658         271 QH  272 (292)
T ss_pred             hC
Confidence            87

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.95  E-value=2.3e-27  Score=205.38  Aligned_cols=152  Identities=19%  Similarity=0.260  Sum_probs=126.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHH-----hCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCS-----SKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH-----~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE   71 (340)
                      +++..++.++.||+.||.|||     +.+ ++|+||+|+||+++.++.+||+|||++.......    ...++..|++||
T Consensus       102 l~~~~~~~~~~~i~~~l~~lH~~~~~~~~-i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE  180 (265)
T cd08217         102 IEEEFIWRILTQLLLALYECHNRSDPGNT-VLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPE  180 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCccccCc-ceecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCCCccChh
Confidence            467889999999999999999     888 9999999999999999999999999988765432    346788999999


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           72 YMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        72 ~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+.+..++.++|+||||+++|+|++|+.|+......     ...+.+........+...+..+.+++.+||..+|.+||+
T Consensus       181 ~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~  255 (265)
T cd08217         181 QLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQL-----QLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPS  255 (265)
T ss_pred             hhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHH-----HHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCC
Confidence            999888999999999999999999999887654321     122222222233445566788999999999999999999


Q ss_pred             HHHHHHH
Q 019475          152 AKSLVIS  158 (340)
Q Consensus       152 ~~e~l~~  158 (340)
                      +.++++|
T Consensus       256 ~~~il~~  262 (265)
T cd08217         256 TEELLQL  262 (265)
T ss_pred             HHHHhhC
Confidence            9999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.95  E-value=1.3e-27  Score=208.93  Aligned_cols=155  Identities=20%  Similarity=0.240  Sum_probs=123.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCcccccc-CC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRT-GR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~-~~   77 (340)
                      +++..+..++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||++......  ....++..|+|||.+.+ ..
T Consensus        94 l~~~~~~~i~~qi~~al~~lH~~~-ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  172 (279)
T cd05633          94 FSEKEMRFYATEIILGLEHMHNRF-VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTA  172 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cCCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCC
Confidence            578889999999999999999999 999999999999999999999999998754432  23467899999999864 55


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NA  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~  152 (340)
                      ++.++|||||||++|+|++|..||.........  ..... ........+...+.++.++|.+||..||.+||     |+
T Consensus       173 ~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  249 (279)
T cd05633         173 YDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH--EIDRM-TLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGA  249 (279)
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHH--HHHHH-hhcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCH
Confidence            789999999999999999999988643211111  11111 11122234556678899999999999999999     69


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      .++++|.
T Consensus       250 ~~~~~h~  256 (279)
T cd05633         250 QEVKEHV  256 (279)
T ss_pred             HHHHhCc
Confidence            9999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.95  E-value=3.3e-27  Score=206.17  Aligned_cols=154  Identities=18%  Similarity=0.324  Sum_probs=123.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ ++|+||+|+||+++.++.++++|||++.......    ...++..|++||++.+.
T Consensus        98 ~~~~~~~~~~~~i~~~l~~lH~~~-ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  176 (277)
T cd06642          98 LEETYIATILREILKGLDYLHSER-KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQS  176 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-eeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCcC
Confidence            467888999999999999999999 9999999999999999999999999987654332    23567889999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+|||||++|+|++|+.|+.......     .............+...+.++.+++.+||..+|++||++.+++
T Consensus       177 ~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  251 (277)
T cd06642         177 AYDFKADIWSLGITAIELAKGEPPNSDLHPMR-----VLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELL  251 (277)
T ss_pred             CCchhhhHHHHHHHHHHHHhCCCCCcccchhh-----HHhhhhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHH
Confidence            89999999999999999999998865431111     1111111122223345667899999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      +|..
T Consensus       252 ~~~~  255 (277)
T cd06642         252 KHKF  255 (277)
T ss_pred             HhHH
Confidence            9754

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.3e-27  Score=191.77  Aligned_cols=152  Identities=20%  Similarity=0.272  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC--CCCcccCCccCCccccccCCCCCc
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--GKSYSTNLAFTPPEYMRTGRVTPE   81 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~   81 (340)
                      .....++.|++.||.|||.++ ||||||||+|+|++..|.+|++|||.+.....  ..+.+||..|.+||...+...+..
T Consensus       124 ~~~a~Yi~q~A~Al~y~h~k~-VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~  202 (281)
T KOG0580|consen  124 QRAATYIKQLANALLYCHLKR-VIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKF  202 (281)
T ss_pred             cchhHHHHHHHHHHHHhccCC-cccCCCCHHHhccCCCCCeeccCCCceeecCCCCceeeecccccCCHhhcCCCCccch
Confidence            456689999999999999999 99999999999999999999999999876543  356789999999999999999999


Q ss_pred             cchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475           82 SVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus        82 ~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                      .|+|++|++.||++.|.+||....    ......++...  .-.+|..++.+..++|.+|+..+|.+|.+..+++.|.+-
T Consensus       203 Vd~w~lgvl~yeflvg~ppFes~~----~~etYkrI~k~--~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI  276 (281)
T KOG0580|consen  203 VDLWSLGVLCYEFLVGLPPFESQS----HSETYKRIRKV--DLKFPSTISGGAADLISRLLVKNPIERLALTEVMDHPWI  276 (281)
T ss_pred             hhHHHHHHHHHHHHhcCCchhhhh----hHHHHHHHHHc--cccCCcccChhHHHHHHHHhccCccccccHHHHhhhHHH
Confidence            999999999999999999987653    22222232222  223467788899999999999999999999999998764


Q ss_pred             h
Q 019475          162 L  162 (340)
Q Consensus       162 ~  162 (340)
                      .
T Consensus       277 ~  277 (281)
T KOG0580|consen  277 V  277 (281)
T ss_pred             H
Confidence            3

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.95  E-value=2.8e-27  Score=204.09  Aligned_cols=153  Identities=18%  Similarity=0.318  Sum_probs=121.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      ++++.++.++.|++.||.|||+.+ ++|+||||+||+++.++.++|+|||.+.......     ...++..|++||.+.+
T Consensus        97 ~~~~~~~~~~~~l~~~l~~lH~~~-i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~  175 (256)
T cd05112          97 FSQETLLGMCLDVCEGMAYLESSN-VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSF  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhcc
Confidence            467888999999999999999999 9999999999999999999999999987543321     1223568999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|||++ |..||........     ...+........+...+..+.+|+.+||..+|.+|||+.+
T Consensus       176 ~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~  250 (256)
T cd05112         176 SKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEV-----VETINAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSL  250 (256)
T ss_pred             CCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHH-----HHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHHH
Confidence            889999999999999999998 8877754332211     1111111122223445678999999999999999999999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      +++.|
T Consensus       251 ~l~~l  255 (256)
T cd05112         251 LLHQL  255 (256)
T ss_pred             HHHhh
Confidence            99876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.95  E-value=1.8e-27  Score=208.38  Aligned_cols=153  Identities=13%  Similarity=0.216  Sum_probs=118.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~--   74 (340)
                      +++..++.++.||+.||.|||+++ ++|+||+|+||+++.++.++|+|||++.....    .....++..|+|||.+.  
T Consensus       118 ~~~~~~~~~~~qi~~al~~LH~~~-ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~  196 (282)
T cd06636         118 LKEDWIAYICREILRGLAHLHAHK-VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACD  196 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcc
Confidence            356678889999999999999999 99999999999999999999999999875432    23456788999999886  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                         +..++.++|+|||||++|+|++|..||......    ...................+..+.+||.+||..+|.+|||
T Consensus       197 ~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~  272 (282)
T cd06636         197 ENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPM----RALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPS  272 (282)
T ss_pred             cCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHH----hhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcC
Confidence               345788999999999999999999887543211    1111111111111122345678999999999999999999


Q ss_pred             HHHHHHH
Q 019475          152 AKSLVIS  158 (340)
Q Consensus       152 ~~e~l~~  158 (340)
                      +.++++|
T Consensus       273 ~~ell~~  279 (282)
T cd06636         273 TEQLLKH  279 (282)
T ss_pred             HHHHhcC
Confidence            9999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.95  E-value=2.2e-27  Score=204.63  Aligned_cols=153  Identities=18%  Similarity=0.266  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.|++.||.|||+.+ ++|+||+|+||+++.++.++|+|||++.......    ...++..|++||++.+.
T Consensus        96 l~~~~~~~~~~~l~~~l~~lh~~~-i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  174 (256)
T cd06612          96 LTEEEIAAILYQTLKGLEYLHSNK-KIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEI  174 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhcC
Confidence            478899999999999999999999 9999999999999999999999999988655432    33567899999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++||||||+++|+|++|+.||........    ....... ......+...+..+.+++.+||+.+|++|||+.++
T Consensus       175 ~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~i  250 (256)
T cd06612         175 GYNNKADIWSLGITAIEMAEGKPPYSDIHPMRA----IFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQL  250 (256)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCcchhhh----hhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHH
Confidence            899999999999999999999988764321110    0000000 00111233455789999999999999999999999


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      +.+
T Consensus       251 l~~  253 (256)
T cd06612         251 LQH  253 (256)
T ss_pred             hcC
Confidence            875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.95  E-value=6.7e-27  Score=203.27  Aligned_cols=155  Identities=14%  Similarity=0.140  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC------CCCCcccCCccCCcccccc-
Q 019475            3 WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR------DGKSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~------~~~~~~~~~~y~aPE~~~~-   75 (340)
                      +.....++.||+.||.|||+++ ++||||||+|||++.++.++|+|||++....      ......++..|+|||++.+ 
T Consensus        98 ~~~~~~~~~~i~~al~~lH~~~-i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  176 (268)
T cd05086          98 LLLLQRMACEIAAGVTHMHKHN-FLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEF  176 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC-eeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccc
Confidence            3456789999999999999999 9999999999999999999999999876422      1123456789999998853 


Q ss_pred             ------CCCCCccchhhHHHHHHHHHhC-CCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCC
Q 019475           76 ------GRVTPESVVYSFGTMLLDLLSG-KHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARE  148 (340)
Q Consensus        76 ------~~~~~~~Di~slG~~~~el~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~  148 (340)
                            ..++.++|||||||++|||+++ ..||........-................+...+..+.+++..|| .+|.+
T Consensus       177 ~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~  255 (268)
T cd05086         177 HGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LSPEK  255 (268)
T ss_pred             cCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hCccc
Confidence                  2357799999999999999975 445533221111111111111111122233445678899999999 67999


Q ss_pred             CCCHHHHHHHH
Q 019475          149 RPNAKSLVISL  159 (340)
Q Consensus       149 Rps~~e~l~~l  159 (340)
                      ||++.++++.|
T Consensus       256 Rp~~~~i~~~l  266 (268)
T cd05086         256 RATAEEVHRLL  266 (268)
T ss_pred             CCCHHHHHHHh
Confidence            99999998876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.95  E-value=9.7e-28  Score=208.49  Aligned_cols=155  Identities=18%  Similarity=0.235  Sum_probs=126.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---CcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~   77 (340)
                      ++....+-++.+|+.||++||..+ ||.|||||+|||+|+.|+++|+|+|++..+..+.   ..+||.+|||||++.++.
T Consensus       284 F~e~ra~FYAAEi~cGLehlH~~~-iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~  362 (591)
T KOG0986|consen  284 FDEQRARFYAAEIICGLEHLHRRR-IVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEV  362 (591)
T ss_pred             CchHHHHHHHHHHHhhHHHHHhcc-eeeccCChhheeeccCCCeEeeccceEEecCCCCccccccCcccccCHHHHcCCc
Confidence            356677889999999999999999 9999999999999999999999999999877664   347899999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NA  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~  152 (340)
                      |+.+.|.|||||++|||+.|+.||....... +...+.+.+. ....++++..+++..+|....|..||++|.     .+
T Consensus       363 Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKv-k~eEvdrr~~-~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcrg~ga  440 (591)
T KOG0986|consen  363 YDFSPDWFSLGCLLYEMIAGHSPFRQRKEKV-KREEVDRRTL-EDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCRGEGA  440 (591)
T ss_pred             ccCCccHHHHHhHHHHHHcccCchhhhhhhh-hHHHHHHHHh-cchhhcccccCHHHHHHHHHHHccCHHHhccCCCcCc
Confidence            9999999999999999999999986643221 1111111111 123356778899999999999999999996     44


Q ss_pred             HHHHHH
Q 019475          153 KSLVIS  158 (340)
Q Consensus       153 ~e~l~~  158 (340)
                      +++.+|
T Consensus       441 ~evk~H  446 (591)
T KOG0986|consen  441 QEVKEH  446 (591)
T ss_pred             chhhhC
Confidence            555544

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.95  E-value=4.1e-27  Score=204.51  Aligned_cols=156  Identities=22%  Similarity=0.294  Sum_probs=123.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-------cccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-------YSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.|++.||.|||+++ ++||||||+||+++.++.++++|||.+........       ..++..|++||.+
T Consensus       103 ~~~~~~~~i~~~i~~~l~~lH~~~-i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~  181 (267)
T cd05066         103 FTVIQLVGMLRGIASGMKYLSDMG-YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAI  181 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHh
Confidence            467889999999999999999999 99999999999999999999999999886543221       1124579999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|+|||||++|++++ |..||........     ...+......+.+...+..+.+++.+||+.+|.+||++
T Consensus       182 ~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  256 (267)
T cd05066         182 AYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDV-----IKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKF  256 (267)
T ss_pred             ccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHH-----HHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhCCCH
Confidence            98889999999999999999886 8887755322111     11111122223344567789999999999999999999


Q ss_pred             HHHHHHHHhh
Q 019475          153 KSLVISLMSL  162 (340)
Q Consensus       153 ~e~l~~l~~~  162 (340)
                      .++++.|..+
T Consensus       257 ~~i~~~l~~~  266 (267)
T cd05066         257 EQIVSILDKL  266 (267)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.95  E-value=1.1e-27  Score=218.70  Aligned_cols=152  Identities=19%  Similarity=0.191  Sum_probs=117.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC------------------------
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD------------------------   57 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------------------------   57 (340)
                      +......++.||+.||.|||+++ |+||||||+|||++.+|++||+|||++.....                        
T Consensus        99 ~e~~~~~~~~qi~~al~~lH~~~-ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (382)
T cd05625          99 PEDLARFYIAELTCAVESVHKMG-FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEW  177 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccc
Confidence            45677789999999999999999 99999999999999999999999999753210                        


Q ss_pred             ---------------------------CCCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh
Q 019475           58 ---------------------------GKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR  110 (340)
Q Consensus        58 ---------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~  110 (340)
                                                 ..+..||+.|+|||++.+..++.++|||||||++|||++|+.||........ 
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~-  256 (382)
T cd05625         178 GDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLET-  256 (382)
T ss_pred             cccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCCHHHH-
Confidence                                       0123588999999999998999999999999999999999999876432211 


Q ss_pred             hhhhhHhhh--ccccCCCCchhHHHHHHHHHHhcccCCCCCCC---HHHHHHHH
Q 019475          111 SKNFLLLMD--SALEGHFSNDEGTELVRLASRCLQSEARERPN---AKSLVISL  159 (340)
Q Consensus       111 ~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps---~~e~l~~l  159 (340)
                         ...+..  .....+.....++++.++|.+|+ .+|.+|++   +.++++|-
T Consensus       257 ---~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp  306 (382)
T cd05625         257 ---QMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHP  306 (382)
T ss_pred             ---HHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCC
Confidence               111111  11111222345678899998876 49999987   99988773

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=3.7e-27  Score=203.98  Aligned_cols=156  Identities=15%  Similarity=0.169  Sum_probs=120.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++..++..++.|++.||.|||+++ ++|+||+|+||+++.++.++|+|||.+......    ....++..|++||.+.+.
T Consensus        98 l~~~~~~~~~~ql~~~l~~lh~~~-i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~  176 (262)
T cd06613          98 LSELQIAYVCRETLKGLAYLHETG-KIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVE  176 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhccc
Confidence            466788899999999999999999 999999999999999999999999998765432    234678889999999876


Q ss_pred             ---CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           77 ---RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        77 ---~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                         .++.++|+|||||++|+|++|..||.................. ......+...+.++.+++.+||..+|..|||+.
T Consensus       177 ~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  255 (262)
T cd06613         177 RKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFP-PPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTAT  255 (262)
T ss_pred             ccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCC-CccccchhhhhHHHHHHHHHHcCCChhhCCCHH
Confidence               7889999999999999999999887653211111000000000 001112334567899999999999999999999


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      +++.|
T Consensus       256 ~il~~  260 (262)
T cd06613         256 KLLQH  260 (262)
T ss_pred             HHhcC
Confidence            99865

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.95  E-value=4e-27  Score=203.18  Aligned_cols=153  Identities=25%  Similarity=0.403  Sum_probs=122.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-----cccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-----YSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~   75 (340)
                      +++.++..++.|++.||.+||+++ ++|+||||+||+++.++.++|+|||++........     ..++..|++||.+.+
T Consensus       100 ~~~~~~~~~~~ql~~~l~~lh~~~-~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~  178 (258)
T smart00219      100 LSLSDLLSFALQIARGMEYLESKN-FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKD  178 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-eeecccccceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhcc
Confidence            468889999999999999999999 99999999999999999999999999886554311     225678999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |..||......     ...+.+........+...+..+.+++.+||..+|++|||+.+
T Consensus       179 ~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~  253 (258)
T smart00219      179 GKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNE-----EVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSE  253 (258)
T ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHH
Confidence            889999999999999999998 66666543211     111122222222334456788999999999999999999999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      +++.|
T Consensus       254 ll~~l  258 (258)
T smart00219      254 LVEIL  258 (258)
T ss_pred             HHhhC
Confidence            98753

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.95  E-value=2.3e-27  Score=212.52  Aligned_cols=155  Identities=20%  Similarity=0.209  Sum_probs=129.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC----CCeEEecccCcccCCCC---CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD----GNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~----~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~   73 (340)
                      ++......++.||+.++.|||+.| ++||||||+|+|+...    +.+|++|||++......   ...+||+.|+|||++
T Consensus       132 ~sE~da~~~~~~il~av~~lH~~g-vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl  210 (382)
T KOG0032|consen  132 YSERDAAGIIRQILEAVKYLHSLG-VVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVL  210 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccCchhh
Confidence            356778899999999999999999 9999999999999644    47999999999987763   355899999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--cccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+..|+..+||||+|+++|.|++|.+||..........    .+...  .+..+..+..+..+.++|.+|+..||.+|+|
T Consensus       211 ~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~----~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~t  286 (382)
T KOG0032|consen  211 GGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL----AILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLT  286 (382)
T ss_pred             cCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH----HHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCC
Confidence            99999999999999999999999999998764332222    22222  2333445567899999999999999999999


Q ss_pred             HHHHHHHHH
Q 019475          152 AKSLVISLM  160 (340)
Q Consensus       152 ~~e~l~~l~  160 (340)
                      +.++++|.|
T Consensus       287 a~~~L~HpW  295 (382)
T KOG0032|consen  287 AAQALQHPW  295 (382)
T ss_pred             HHHHhcCcc
Confidence            999999754

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.95  E-value=3.8e-27  Score=203.30  Aligned_cols=153  Identities=20%  Similarity=0.272  Sum_probs=123.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.|++.||.|||+.+ ++|+||+|+||+++.++.+||+|||++.......    ...+++.|+|||.+.+.
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~-i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~  176 (256)
T cd08221          98 FEEEMVLWYLFQIVSAVSYIHKAG-ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGV  176 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccccCCChHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCCC
Confidence            467788999999999999999999 9999999999999999999999999987654332    34678899999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+||||+++|+|++|..||........    ...+.... ....+...+.++.+++.+||..+|.+|||+.+++
T Consensus       177 ~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll  251 (256)
T cd08221         177 KYNFKSDIWALGCVLYELLTLKRTFDATNPLNL----VVKIVQGN-YTPVVSVYSSELISLVHSLLQQDPEKRPTADEVL  251 (256)
T ss_pred             CCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHH----HHHHHcCC-CCCCccccCHHHHHHHHHHcccCcccCCCHHHHh
Confidence            889999999999999999999988765322211    11111111 1122345677899999999999999999999998


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      +++
T Consensus       252 ~~~  254 (256)
T cd08221         252 DQP  254 (256)
T ss_pred             hCc
Confidence            864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.95  E-value=2.6e-27  Score=205.64  Aligned_cols=152  Identities=18%  Similarity=0.269  Sum_probs=119.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      +++...+.++.|++.||.|||+.+ ++||||+|+||+++.++.++|+|||+++.....       ....++..|+|||.+
T Consensus       103 l~~~~~~~~~~qi~~~l~~LH~~~-i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (266)
T cd06651         103 LTESVTRKYTRQILEGMSYLHSNM-IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVI  181 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHh
Confidence            467788899999999999999999 999999999999999999999999998754321       123467889999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .+..++.++|||||||++|+|++|+.||......    ...............+...++.+.+++ +||..+|++||++.
T Consensus       182 ~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~  256 (266)
T cd06651         182 SGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAM----AAIFKIATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAE  256 (266)
T ss_pred             CCCCCCchhhhHHHHHHHHHHHHCCCCccccchH----HHHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHH
Confidence            9888999999999999999999999887543111    111111111122233445567788888 68888999999999


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      ++++|
T Consensus       257 eil~h  261 (266)
T cd06651         257 ELLRH  261 (266)
T ss_pred             HHhcC
Confidence            99876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.95  E-value=2.5e-27  Score=205.82  Aligned_cols=153  Identities=18%  Similarity=0.252  Sum_probs=118.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~--   74 (340)
                      +++.+++.++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||++......    ....++..|+|||++.  
T Consensus       103 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  181 (267)
T cd06645         103 LSESQIAYVSRETLQGLYYLHSKG-KMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVE  181 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccc
Confidence            467788999999999999999999 999999999999999999999999998754322    3346789999999874  


Q ss_pred             -cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc-CCC--CchhHHHHHHHHHHhcccCCCCCC
Q 019475           75 -TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE-GHF--SNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 -~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                       ...++.++|+|||||++|+|++|..||........    .......... ...  ....+..+.+++.+||..+|++||
T Consensus       182 ~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~  257 (267)
T cd06645         182 RKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRA----LFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRP  257 (267)
T ss_pred             cCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhh----HHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCc
Confidence             45578899999999999999999988754321110    0011111111 111  113456799999999999999999


Q ss_pred             CHHHHHHH
Q 019475          151 NAKSLVIS  158 (340)
Q Consensus       151 s~~e~l~~  158 (340)
                      |++++++|
T Consensus       258 ~~~~ll~~  265 (267)
T cd06645         258 TAEKLLQH  265 (267)
T ss_pred             CHHHHhcC
Confidence            99999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.95  E-value=1.8e-27  Score=216.13  Aligned_cols=154  Identities=19%  Similarity=0.221  Sum_probs=119.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCccccccC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~   76 (340)
                      +...+..++.||+.||.|||+++ |+||||||+|||++.++++||+|||+++.....     ....||+.|+|||++.+.
T Consensus       140 ~~~~~~~~~~qi~~aL~~LH~~~-ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~  218 (371)
T cd05622         140 PEKWARFYTAEVVLALDAIHSMG-FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQ  218 (371)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-EEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhcc
Confidence            45677889999999999999999 999999999999999999999999998865432     245689999999998754


Q ss_pred             C----CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCC--
Q 019475           77 R----VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARE--  148 (340)
Q Consensus        77 ~----~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~--  148 (340)
                      .    ++.++|||||||++|||++|..||.......    ....+....  .........+..+.++|.+||...+.+  
T Consensus       219 ~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~----~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~  294 (371)
T cd05622         219 GGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG----TYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLG  294 (371)
T ss_pred             CCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHH----HHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcC
Confidence            3    7889999999999999999999987643221    112222111  111122356788999999999844433  


Q ss_pred             CCCHHHHHHHHH
Q 019475          149 RPNAKSLVISLM  160 (340)
Q Consensus       149 Rps~~e~l~~l~  160 (340)
                      |+++.++++|.+
T Consensus       295 r~~~~ei~~h~~  306 (371)
T cd05622         295 RNGVEEIKRHLF  306 (371)
T ss_pred             CCCHHHHhcCcc
Confidence            789999998864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.3e-27  Score=217.91  Aligned_cols=154  Identities=19%  Similarity=0.187  Sum_probs=118.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------------   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------------   58 (340)
                      ++...+..++.|++.||+|||++| |+||||||+|||++.++.+||+|||+++.....                      
T Consensus        98 ~~~~~~~~~~~ql~~aL~~LH~~g-ivHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (377)
T cd05629          98 FSEDVTRFYMAECVLAIEAVHKLG-FIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNR  176 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccCCCHHHEEECCCCCEEEeecccccccccccccccccccccccccccccccc
Confidence            356677889999999999999999 999999999999999999999999998632110                      


Q ss_pred             -----------------------------CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh
Q 019475           59 -----------------------------KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI  109 (340)
Q Consensus        59 -----------------------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~  109 (340)
                                                   .+..||+.|+|||++.+..++.++|||||||++|||++|..||........
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~  256 (377)
T cd05629         177 NSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHET  256 (377)
T ss_pred             cccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCHHHH
Confidence                                         023588999999999988999999999999999999999999865432111


Q ss_pred             hhhhhhHhhhccccCCCCc--hhHHHHHHHHHHhcccCCCCC---CCHHHHHHHHH
Q 019475          110 RSKNFLLLMDSALEGHFSN--DEGTELVRLASRCLQSEARER---PNAKSLVISLM  160 (340)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~cl~~~p~~R---ps~~e~l~~l~  160 (340)
                          ...+........++.  ..+.++.+||.+||. +|.+|   +|+.+++.|.+
T Consensus       257 ----~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~  307 (377)
T cd05629         257 ----YRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPF  307 (377)
T ss_pred             ----HHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCC
Confidence                111111111111222  356789999999998 66665   59999998853

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.6e-27  Score=213.09  Aligned_cols=150  Identities=21%  Similarity=0.255  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccc---cCCCCC
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMR---TGRVTP   80 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~   80 (340)
                      .++..|..+.+.||+|||+++ .||||||.-|||+++.|.|||+|||.+....+..+++||+.|||||++.   .+.|+-
T Consensus       126 vEIAAi~~gaL~gLaYLHS~~-~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYdg  204 (948)
T KOG0577|consen  126 VEIAAITHGALQGLAYLHSHN-RIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDG  204 (948)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-HHhhhccccceEecCCCeeeeccccchhhcCchhcccCCccccchhHheeccccccCC
Confidence            466788999999999999999 9999999999999999999999999999999999999999999999986   578999


Q ss_pred             ccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           81 ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        81 ~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ++||||||+++.||..+++|.+.- ........+.+.-.+.+.   ....+..+++|+..||++-|.+|||.++++.|
T Consensus       205 kvDvWSLGITCIELAERkPPlFnM-NAMSALYHIAQNesPtLq---s~eWS~~F~~Fvd~CLqKipqeRptse~ll~H  278 (948)
T KOG0577|consen  205 KVDVWSLGITCIELAERKPPLFNM-NAMSALYHIAQNESPTLQ---SNEWSDYFRNFVDSCLQKIPQERPTSEELLKH  278 (948)
T ss_pred             ccceeeccchhhhhhhcCCCccCc-hHHHHHHHHHhcCCCCCC---CchhHHHHHHHHHHHHhhCcccCCcHHHHhhc
Confidence            999999999999999999765442 111122222222222222   34567889999999999999999999999987

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.94  E-value=2e-27  Score=206.42  Aligned_cols=154  Identities=19%  Similarity=0.255  Sum_probs=118.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~--   74 (340)
                      +++.++..++.|++.||.|||+++ ++||||+|+||+++.++.++|+|||++......    ....++..|+|||.+.  
T Consensus       103 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  181 (267)
T cd06646         103 LSELQIAYVCRETLQGLAYLHSKG-KMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVE  181 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCCHHHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHcccc
Confidence            356788899999999999999999 999999999999999999999999998865422    2345788999999885  


Q ss_pred             -cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC---CCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           75 -TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG---HFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 -~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                       ...++.++|+|||||++|+|++|+.|+.......    ....+.......   ......+..+.+++.+||..+|++||
T Consensus       182 ~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp  257 (267)
T cd06646         182 KNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMR----ALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRP  257 (267)
T ss_pred             cCCCCcchhhHHHHHHHHHHHHhCCCCccccchhh----hheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCc
Confidence             3447789999999999999999998774321110    000111111111   11123467899999999999999999


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      |+++++++|
T Consensus       258 ~~~~il~~l  266 (267)
T cd06646         258 TAERLLTHL  266 (267)
T ss_pred             CHHHHhcCC
Confidence            999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.94  E-value=9.4e-28  Score=218.75  Aligned_cols=154  Identities=21%  Similarity=0.204  Sum_probs=118.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC------------------------
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD------------------------   57 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------------------------   57 (340)
                      +......++.||+.||+|||+++ |+||||||+|||++.++.+||+|||++.....                        
T Consensus        99 ~~~~~~~~~~qi~~al~~lH~~~-ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (376)
T cd05598          99 EEDLARFYIAELTCAIESVHKMG-FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEW  177 (376)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-eEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccc
Confidence            45667788999999999999999 99999999999999999999999999742210                        


Q ss_pred             -----------------------CCCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh
Q 019475           58 -----------------------GKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF  114 (340)
Q Consensus        58 -----------------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~  114 (340)
                                             .....||+.|+|||++.+..++.++|||||||++|||++|+.||............ 
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i-  256 (376)
T cd05598         178 SEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKV-  256 (376)
T ss_pred             cccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHHHHHHH-
Confidence                                   01246899999999999989999999999999999999999998765322111110 


Q ss_pred             hHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC---CHHHHHHHH
Q 019475          115 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP---NAKSLVISL  159 (340)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp---s~~e~l~~l  159 (340)
                       ...............+..+.++|.+|+ .+|.+|+   ++.++++|.
T Consensus       257 -~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~  302 (376)
T cd05598         257 -INWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAHP  302 (376)
T ss_pred             -hccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCC
Confidence             000111111122345678899999977 5999999   999999884

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.94  E-value=8.7e-28  Score=217.66  Aligned_cols=153  Identities=16%  Similarity=0.156  Sum_probs=118.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------------   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------------   58 (340)
                      ++......++.||+.||.|||++| |+||||||+|||++.+|+++|+|||++......                      
T Consensus        98 l~~~~~~~~~~qi~~~L~~lH~~g-ivHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (360)
T cd05627          98 LSEEATQFYIAETVLAIDAIHQLG-FIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNM  176 (360)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCccccccccc
Confidence            456778889999999999999999 999999999999999999999999998643211                      


Q ss_pred             -----------------CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc
Q 019475           59 -----------------KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA  121 (340)
Q Consensus        59 -----------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~  121 (340)
                                       .+.+||+.|+|||++.+..++.++|||||||++|||++|..||........    ...+....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~----~~~i~~~~  252 (360)
T cd05627         177 NSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQET----YRKVMNWK  252 (360)
T ss_pred             ccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCHHHH----HHHHHcCC
Confidence                             124689999999999999999999999999999999999999876432211    11111111


Q ss_pred             ccCCCCc--hhHHHHHHHHHHhcccCCCCCC---CHHHHHHHH
Q 019475          122 LEGHFSN--DEGTELVRLASRCLQSEARERP---NAKSLVISL  159 (340)
Q Consensus       122 ~~~~~~~--~~~~~~~~li~~cl~~~p~~Rp---s~~e~l~~l  159 (340)
                      ....++.  ..++++.+||.+|+. +|.+|+   ++.++++|-
T Consensus       253 ~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~hp  294 (360)
T cd05627         253 ETLVFPPEVPISEKAKDLILRFCT-DSENRIGSNGVEEIKSHP  294 (360)
T ss_pred             CceecCCCCCCCHHHHHHHHHhcc-ChhhcCCCCCHHHHhcCC
Confidence            1111121  356789999999875 999998   478888773

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.8e-27  Score=214.69  Aligned_cols=164  Identities=23%  Similarity=0.385  Sum_probs=137.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC----cccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS----YSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~y~aPE~~~~~   76 (340)
                      ++..+++.++.+.+.||+|||+++ +|||||-.+|+|++.++.+||+|||+++.......    ..-...|+|||.+..+
T Consensus       259 v~~~ek~~~~~~AA~Gl~YLh~k~-~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~  337 (474)
T KOG0194|consen  259 LPTLEKLRFCYDAARGLEYLHSKN-CIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTG  337 (474)
T ss_pred             CCHHHHHHHHHHHHhHHHHHHHCC-CcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccC
Confidence            467899999999999999999999 99999999999999999999999999876542211    1235689999999999


Q ss_pred             CCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|||||||++||+++ |..|+++.......    ..+.....+...+...+..+..++.+||..+|++||||.++
T Consensus       338 ~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~----~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i  413 (474)
T KOG0194|consen  338 IFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVK----AKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTI  413 (474)
T ss_pred             ccccccchhheeeeEEeeeccCCCCCCCCCHHHHH----HHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHH
Confidence            99999999999999999999 67787775433222    22224455666677888999999999999999999999999


Q ss_pred             HHHHHhhhhhccCC
Q 019475          156 VISLMSLQKEAEVP  169 (340)
Q Consensus       156 l~~l~~~~~~~~~~  169 (340)
                      .+.++.+......+
T Consensus       414 ~~~l~~~~~~~~~~  427 (474)
T KOG0194|consen  414 KKKLEALEKKKEAF  427 (474)
T ss_pred             HHHHHHHHhccccc
Confidence            99999988876654

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.94  E-value=4.3e-27  Score=206.29  Aligned_cols=156  Identities=18%  Similarity=0.289  Sum_probs=119.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~-   75 (340)
                      +++.+++.++.||+.||.|||+.+ ++|+||||+||+++.++.++|+|||++.......    ...++..|++||++.+ 
T Consensus        97 ~~~~~~~~~~~ql~~~l~~LH~~~-i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  175 (286)
T cd07847          97 VPEHLIKKIIWQTLQAVNFCHKHN-CIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGD  175 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceecCCChhhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHHHHhCC
Confidence            478889999999999999999999 9999999999999999999999999988655432    3456788999999876 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH-----------hhh----------ccccCC-----CCch
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL-----------LMD----------SALEGH-----FSND  129 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~-----------~~~----------~~~~~~-----~~~~  129 (340)
                      ..++.++||||||+++|+|++|..||......... .....           ...          +.....     ....
T Consensus       176 ~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (286)
T cd07847         176 TQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQL-YLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPN  254 (286)
T ss_pred             CCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHH-HHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhcc
Confidence            45788999999999999999999888654221100 00000           000          000000     0113


Q ss_pred             hHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          130 EGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       130 ~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+..+.+|+.+||..+|++|||+.+++.|
T Consensus       255 ~~~~~~~li~~~l~~~p~~Rp~~~eil~~  283 (286)
T cd07847         255 ISSPALSFLKGCLQMDPTERLSCEELLEH  283 (286)
T ss_pred             CCHHHHHHHHHHhcCCccccCCHHHHhcC
Confidence            45778999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.94  E-value=5.1e-27  Score=208.19  Aligned_cols=155  Identities=18%  Similarity=0.212  Sum_probs=123.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccc---cCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMR---TGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~   77 (340)
                      +++.++..++.|++.||.|||+++ ++||||+|+||+++.++.++|+|||++..........++..|+|||.+.   +..
T Consensus       112 l~~~~~~~~~~~l~~~l~~LH~~~-i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  190 (308)
T cd06634         112 LQEVEIAAVTHGALQGLAYLHSHN-MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDEGQ  190 (308)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHhEEECCCCcEEECCcccceeecCcccccCCccccCHHHHhhcccCC
Confidence            456788999999999999999999 9999999999999999999999999988776666677889999999975   345


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++|||||||++|+|++|..||........    .................+..+.+||.+||..+|++||++.+++.
T Consensus       191 ~~~~~Di~slG~il~el~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~  266 (308)
T cd06634         191 YDGKVDVWSLGITCIELAERKPPLFNMNAMSA----LYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (308)
T ss_pred             CCcccchHHHHHHHHHHHcCCCCCccccHHHH----HHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhh
Confidence            78899999999999999999988754321111    11111111111123356678999999999999999999999998


Q ss_pred             HHH
Q 019475          158 SLM  160 (340)
Q Consensus       158 ~l~  160 (340)
                      +.+
T Consensus       267 ~~~  269 (308)
T cd06634         267 HRF  269 (308)
T ss_pred             Ccc
Confidence            743

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.94  E-value=6.6e-27  Score=204.30  Aligned_cols=154  Identities=17%  Similarity=0.305  Sum_probs=124.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+...++.|++.||.|||+++ ++|+||+|+||+++.++.++|+|||++......    ....++..|+|||++.+.
T Consensus        98 l~~~~~~~~~~~l~~~l~~lh~~~-ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~  176 (277)
T cd06640          98 FDEFQIATMLKEILKGLDYLHSEK-KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQS  176 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhccC
Confidence            356788899999999999999999 999999999999999999999999998765432    223567889999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+|||||++|+|++|..|+.......     .............+...+..+.+++.+||..+|++||++.+++
T Consensus       177 ~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  251 (277)
T cd06640         177 AYDSKADIWSLGITAIELAKGEPPNSDMHPMR-----VLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELL  251 (277)
T ss_pred             CCccHHHHHHHHHHHHHHHHCCCCCCCcChHh-----HhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHH
Confidence            89999999999999999999998875432111     1111111222234446778899999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      .+..
T Consensus       252 ~~~~  255 (277)
T cd06640         252 KHKF  255 (277)
T ss_pred             hChH
Confidence            8844

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.94  E-value=4.1e-27  Score=206.16  Aligned_cols=156  Identities=20%  Similarity=0.342  Sum_probs=120.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-   75 (340)
                      +++.+++.++.||+.||.|||++ + ++||||||+||+++.++.+||+|||++......   ....++..|++||.+.+ 
T Consensus       100 ~~~~~~~~~~~qi~~~l~~lH~~~~-i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  178 (283)
T cd06617         100 IPEDILGKIAVSIVKALEYLHSKLS-VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPE  178 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCC-eecCCCCHHHEEECCCCCEEEeecccccccccccccccccCCccccChhhcCCc
Confidence            46788999999999999999998 7 999999999999999999999999998765432   22457888999998865 


Q ss_pred             ---CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           76 ---GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        76 ---~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                         ..++.++|+|||||++|+|++|+.||.......   ...................+.++.++|.+||..+|.+||++
T Consensus       179 ~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~  255 (283)
T cd06617         179 LNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPF---QQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNY  255 (283)
T ss_pred             ccccccCccccchhhHHHHHHHHhCCCCCCccccCH---HHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCH
Confidence               346889999999999999999998875422111   11111111111111122456789999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          153 KSLVISLM  160 (340)
Q Consensus       153 ~e~l~~l~  160 (340)
                      .+++++-.
T Consensus       256 ~~il~~~~  263 (283)
T cd06617         256 PELLQHPF  263 (283)
T ss_pred             HHHhcCch
Confidence            99998643

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.94  E-value=1.2e-27  Score=198.85  Aligned_cols=158  Identities=16%  Similarity=0.258  Sum_probs=118.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC----CCeEEecccCcccCCCC-------CCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD----GNPRLSSFGLMKNSRDG-------KSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~----~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~a   69 (340)
                      ++-.++.+|+-||+.|+.|||++. |+||||||.|||+..+    |.|||+|||+++.+...       ...+.|++|+|
T Consensus       129 lp~~mvKsilwQil~Gv~YLH~NW-vlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRA  207 (438)
T KOG0666|consen  129 LPRSMVKSILWQILDGVHYLHSNW-VLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRA  207 (438)
T ss_pred             CCHHHHHHHHHHHHhhhHHHhhhh-eeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecC
Confidence            356688899999999999999999 9999999999999888    89999999999976532       34467999999


Q ss_pred             ccccccCC-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh-----hhhhHhhhc-----------------------
Q 019475           70 PEYMRTGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS-----KNFLLLMDS-----------------------  120 (340)
Q Consensus        70 PE~~~~~~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~-----~~~~~~~~~-----------------------  120 (340)
                      ||.+.|.+ |+.+.|||++|||+.||+|-.+.|.+...+.-..     ..+.+++.-                       
T Consensus       208 PELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls  287 (438)
T KOG0666|consen  208 PELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLS  287 (438)
T ss_pred             hHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHH
Confidence            99999865 8999999999999999999998776542111100     001111100                       


Q ss_pred             cccCC-CCc-----------hhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          121 ALEGH-FSN-----------DEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       121 ~~~~~-~~~-----------~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      .++.. ...           .-++...+|+.++|.+||-+|.|+.+.++|.
T Consensus       288 ~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~  338 (438)
T KOG0666|consen  288 DFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHP  338 (438)
T ss_pred             HhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhccc
Confidence            00000 000           0123477999999999999999999998873

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=4.2e-27  Score=207.56  Aligned_cols=151  Identities=20%  Similarity=0.331  Sum_probs=125.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc-CCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD-KDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      ...-..+++.||+.||.|||+-. +|||||||+||++- +-|-|||.|||++..+.++   .+.+|++.|.|||++.|..
T Consensus       116 ~E~La~kYF~QI~~AI~YCHqLH-VVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDs  194 (864)
T KOG4717|consen  116 NEDLAKKYFAQIVHAISYCHQLH-VVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDS  194 (864)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhh-hhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCc
Confidence            34566789999999999999999 99999999998765 5689999999999988877   4668999999999999998


Q ss_pred             CC-CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VT-PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~-~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      |+ ++.||||||||+|-|++|++||.....    ...+..+++-  .-..|...+.++++||..||+.||.+|.|.++|.
T Consensus       195 YDAPAVDiWSLGVILyMLVCGq~PFqeAND----SETLTmImDC--KYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~  268 (864)
T KOG4717|consen  195 YDAPAVDIWSLGVILYMLVCGQPPFQEAND----SETLTMIMDC--KYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIV  268 (864)
T ss_pred             cCCcchhhhHHHHHHHHHHhCCCccccccc----hhhhhhhhcc--cccCchhhhHHHHHHHHHHHhcCchhhccHHHHh
Confidence            86 589999999999999999998865321    1222223332  2245778899999999999999999999999997


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      .+-
T Consensus       269 s~~  271 (864)
T KOG4717|consen  269 STS  271 (864)
T ss_pred             ccc
Confidence            663

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.94  E-value=3.1e-27  Score=208.86  Aligned_cols=158  Identities=17%  Similarity=0.302  Sum_probs=119.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||++......    ....+++.|+|||++.+.
T Consensus       101 ~~~~~~~~~~~qi~~aL~~lH~~~-i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  179 (301)
T cd07873         101 INMHNVKLFLFQLLRGLNYCHRRK-VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGS  179 (301)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCC
Confidence            356788899999999999999999 999999999999999999999999998754322    233568899999998754


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh-----------hhHhhhc------ccc---C----CCCchhH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN-----------FLLLMDS------ALE---G----HFSNDEG  131 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~-----------~~~~~~~------~~~---~----~~~~~~~  131 (340)
                       .++.++|||||||++|+|++|++||............           .......      ...   .    ......+
T Consensus       180 ~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (301)
T cd07873         180 TDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLD  259 (301)
T ss_pred             CCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCC
Confidence             4788999999999999999999988764322110000           0000000      000   0    0112356


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ..+.+||.+||..||.+|||+.++++|.
T Consensus       260 ~~~~~li~~ml~~dp~~R~t~~eil~h~  287 (301)
T cd07873         260 SDGAELLSKLLQFEGRKRISAEEAMKHP  287 (301)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhcCc
Confidence            6789999999999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.94  E-value=4.6e-27  Score=206.18  Aligned_cols=154  Identities=20%  Similarity=0.253  Sum_probs=121.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.|++.||+|||+++ ++||||+|+||+++.++.++|+|||.+......    ....++..|++||.+.+.
T Consensus       112 ~~~~~~~~~~~ql~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  190 (285)
T cd06648         112 MNEEQIATVCLAVLKALSFLHAQG-VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRL  190 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcCC
Confidence            467788999999999999999999 999999999999999999999999987654322    234578899999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|||||||++|+|++|+.||......... ..........  ...+...+..+.+++.+||..+|++|||+.+++
T Consensus       191 ~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il  267 (285)
T cd06648         191 PYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAM-KRIRDNLPPK--LKNLHKVSPRLRSFLDRMLVRDPAQRATAAELL  267 (285)
T ss_pred             CCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHH-HHHHhcCCCC--CcccccCCHHHHHHHHHHcccChhhCcCHHHHc
Confidence            8999999999999999999999887653211110 1111110001  111223567899999999999999999999998


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      +|
T Consensus       268 ~~  269 (285)
T cd06648         268 NH  269 (285)
T ss_pred             cC
Confidence            76

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.94  E-value=7.2e-27  Score=205.64  Aligned_cols=153  Identities=18%  Similarity=0.211  Sum_probs=119.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~--   74 (340)
                      +++.+++.++.|++.||.|||+++ ++||||||+||+++.++.++|+|||++......    ....++..|++||++.  
T Consensus       107 l~~~~~~~~~~ql~~~l~~lH~~~-i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  185 (292)
T cd06644         107 LTEPQIQVICRQMLEALQYLHSMK-IIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCE  185 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-eeecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccccCceeeccc
Confidence            467889999999999999999999 999999999999999999999999987653322    2345788999999985  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc-cCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL-EGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                         ...++.++|||||||++|+|++|..||.......    .......... ....+...+.++.+++.+||..+|++||
T Consensus       186 ~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  261 (292)
T cd06644         186 TMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR----VLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRP  261 (292)
T ss_pred             cccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHH----HHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCc
Confidence               3446789999999999999999998875432111    1111111111 1112344567899999999999999999


Q ss_pred             CHHHHHHH
Q 019475          151 NAKSLVIS  158 (340)
Q Consensus       151 s~~e~l~~  158 (340)
                      ++.+++++
T Consensus       262 ~~~~il~~  269 (292)
T cd06644         262 SAAQLLEH  269 (292)
T ss_pred             CHHHHhcC
Confidence            99999876

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.94  E-value=5.8e-27  Score=203.27  Aligned_cols=152  Identities=18%  Similarity=0.226  Sum_probs=120.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC-------CCCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-------GKSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-------~~~~~~~~~y~aPE~~   73 (340)
                      +++...+.++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||.+.....       .....++..|+|||++
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lH~~~-i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (265)
T cd06652         103 LTENVTRKYTRQILEGVSYLHSNM-IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVI  181 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhh
Confidence            356778899999999999999999 99999999999999999999999999875432       1234578899999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .+..++.++|||||||++|+|++|+.||......    ...............+...+..+.+++.+||. +|++||+++
T Consensus       182 ~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~  256 (265)
T cd06652         182 SGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAM----AAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSAD  256 (265)
T ss_pred             cCCCCCcchhHHHHHHHHHHHhhCCCCCCccchH----HHHHHHhcCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHH
Confidence            8888999999999999999999999887543111    11112221122233455666789999999995 999999999


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      ++++|
T Consensus       257 ~il~~  261 (265)
T cd06652         257 ELLRH  261 (265)
T ss_pred             HHhcC
Confidence            99876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.94  E-value=6.8e-27  Score=203.26  Aligned_cols=155  Identities=17%  Similarity=0.276  Sum_probs=123.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+++++.|++.||.|||+ .+ ++|+||+|.||+++.++.++|+|||.+......   ....++..|++||.+.+.
T Consensus       110 ~~~~~~~~~~~~l~~~l~~lh~~~~-i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~  188 (269)
T cd08528         110 FTEERIWNIFVQMVLALRYLHKEKR-IVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNE  188 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCc-eeecCCCHHHEEECCCCcEEEecccceeecccccccccccCcccCcChhhhcCC
Confidence            4667889999999999999996 56 999999999999999999999999998765543   234678899999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+||||+++|+|++|..||.........    ................+..+.+++.+||..||++||++.|+.
T Consensus       189 ~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~  264 (269)
T cd08528         189 PYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLA----TKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVS  264 (269)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCCcccccCHHHHH----HHHhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHH
Confidence            8999999999999999999999887543222111    111111111111224567899999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      .++.
T Consensus       265 ~~~~  268 (269)
T cd08528         265 AMIS  268 (269)
T ss_pred             HHhc
Confidence            8864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=8.8e-27  Score=204.41  Aligned_cols=157  Identities=17%  Similarity=0.309  Sum_probs=122.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..++.||+.||.|||+. + ++|+||||+||+++.++.++|+|||.+......  ....++..|++||.+.+..
T Consensus        99 ~~~~~~~~~~~~i~~~l~~LH~~~~-i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  177 (286)
T cd06622          99 IPEDVLRRITYAVVKGLKFLKEEHN-IIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGG  177 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCC-EeeCCCCHHHEEECCCCCEEEeecCCcccccCCccccCCCccCccCcchhcCCC
Confidence            46788999999999999999974 7 999999999999999999999999998765332  3345778999999986543


Q ss_pred             ------CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           78 ------VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        78 ------~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                            ++.++|||||||++|+|++|..||......... .....+. .......+...+.++.+||.+||..+|.+||+
T Consensus       178 ~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~  255 (286)
T cd06622         178 PNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIF-AQLSAIV-DGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPT  255 (286)
T ss_pred             CCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHH-HHHHHHh-hcCCCCCCcccCHHHHHHHHHHcccCcccCCC
Confidence                  478999999999999999999988653221111 1111111 12223345567788999999999999999999


Q ss_pred             HHHHHHHHH
Q 019475          152 AKSLVISLM  160 (340)
Q Consensus       152 ~~e~l~~l~  160 (340)
                      +.+++.+.+
T Consensus       256 ~~~l~~~~~  264 (286)
T cd06622         256 YAQLLEHPW  264 (286)
T ss_pred             HHHHhcChh
Confidence            999998744

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.94  E-value=5e-27  Score=212.18  Aligned_cols=159  Identities=15%  Similarity=0.190  Sum_probs=121.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---CcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~   77 (340)
                      ++..+...++.|++.||.|||++| ++||||||+||+++.++.+||+|||+++......   ...++..|+|||.+.+..
T Consensus       115 l~~~~~~~~~~ql~~aL~~LH~~g-i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  193 (353)
T cd07850         115 LDHERMSYLLYQMLCGIKHLHSAG-IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  193 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeCCCCHHHEEECCCCCEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCC
Confidence            456778889999999999999999 9999999999999999999999999998655432   335688999999999989


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh----------h--------h---------------Hhhhcccc-
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN----------F--------L---------------LLMDSALE-  123 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~----------~--------~---------------~~~~~~~~-  123 (340)
                      ++.++|||||||++|+|++|+.||........-...          +        .               ........ 
T Consensus       194 ~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (353)
T cd07850         194 YKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFP  273 (353)
T ss_pred             CCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccC
Confidence            999999999999999999999888654211000000          0        0               00000000 


Q ss_pred             ---CCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          124 ---GHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       124 ---~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                         ...+...+..+.++|.+||..||++|||+.+++.|-+
T Consensus       274 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~  313 (353)
T cd07850         274 PDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPY  313 (353)
T ss_pred             cccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChh
Confidence               0001134567899999999999999999999998743

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=4.2e-27  Score=202.13  Aligned_cols=153  Identities=17%  Similarity=0.252  Sum_probs=127.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      |+..+.-.+++||..|+.|||.++ ++|||||.+|||++.++++||+|||++..+...   .+++|++.|.+||++.|.+
T Consensus       150 LsErEaRhfFRQIvSAVhYCHknr-VvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~P  228 (668)
T KOG0611|consen  150 LSEREARHFFRQIVSAVHYCHKNR-VVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTP  228 (668)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhcc-ceecccchhheeecCCCCeeeeccchhhhhccccHHHHhcCCcccCCccccCCCC
Confidence            566788899999999999999999 999999999999999999999999999887766   4779999999999999998


Q ss_pred             C-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 V-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      | ++..|-||||+++|.|+.|..||.+.....    .+.++-...++.   +..+.+..-||++||..+|++|.|+.+|.
T Consensus       229 Y~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~----lvrQIs~GaYrE---P~~PSdA~gLIRwmLmVNP~RRATieDiA  301 (668)
T KOG0611|consen  229 YKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKR----LVRQISRGAYRE---PETPSDASGLIRWMLMVNPERRATIEDIA  301 (668)
T ss_pred             CCCCccchhhHHHHHHHHhhcccccCCchHHH----HHHHhhcccccC---CCCCchHHHHHHHHHhcCcccchhHHHHh
Confidence            7 678999999999999999999997753221    122222222221   23345678899999999999999999999


Q ss_pred             HHHHh
Q 019475          157 ISLMS  161 (340)
Q Consensus       157 ~~l~~  161 (340)
                      .|-|-
T Consensus       302 sHWWv  306 (668)
T KOG0611|consen  302 SHWWV  306 (668)
T ss_pred             hhhee
Confidence            88653

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.94  E-value=7.6e-27  Score=207.50  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=122.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccc---cCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMR---TGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~   77 (340)
                      +++.+++.++.||+.||.|||++| ++|+||+|+||+++.++.++|+|||++..........++..|+|||++.   +..
T Consensus       118 l~~~~~~~~~~qi~~al~~LH~~g-i~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  196 (313)
T cd06633         118 LQEVEIAAITHGALQGLAYLHSHN-MIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAMDEGQ  196 (313)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCChhhEEECCCCCEEEeecCCCcccCCCCCccccccccChhhccccCCCC
Confidence            467889999999999999999999 9999999999999999999999999987766656677889999999984   456


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++|||||||++|+|++|..|+.........    ................+..+.+|+.+||+.+|.+||++.+++.
T Consensus       197 ~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         197 YDGKVDVWSLGITCIELAERKPPLFNMNAMSAL----YHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCChHHHH----HHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            788999999999999999999887654211111    1111111111122334567999999999999999999999987


Q ss_pred             H
Q 019475          158 S  158 (340)
Q Consensus       158 ~  158 (340)
                      +
T Consensus       273 ~  273 (313)
T cd06633         273 H  273 (313)
T ss_pred             C
Confidence            6

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.94  E-value=5.5e-27  Score=202.30  Aligned_cols=152  Identities=18%  Similarity=0.285  Sum_probs=123.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.|++.||.|||+++ ++|+||+|+||+++.++.++|+|||.+......    ....+++.|+|||++.+.
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~-i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~  176 (256)
T cd08218          98 FPEDQILDWFVQICLALKHVHDRK-ILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENR  176 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCC
Confidence            357788999999999999999999 999999999999999999999999998765432    233577889999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+|||||++++|++|..||.........    ..... ......+...+.++.++|.+||..+|.+||++.+++
T Consensus       177 ~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl  251 (256)
T cd08218         177 PYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLV----LKIIR-GSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSIL  251 (256)
T ss_pred             CCCCccchhHHHHHHHHHHcCCCCccCCCHHHHH----HHHhc-CCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence            8999999999999999999999887654322111    11111 112223455678899999999999999999999999


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      +|
T Consensus       252 ~~  253 (256)
T cd08218         252 EK  253 (256)
T ss_pred             hC
Confidence            86

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.94  E-value=4.2e-27  Score=210.47  Aligned_cols=159  Identities=20%  Similarity=0.255  Sum_probs=116.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC-----------CCCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-----------GKSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-----------~~~~~~~~~y~a   69 (340)
                      +++..++.++.||+.||.|||+++ ++||||||+|||++.++.++++||+.......           .....++..|+|
T Consensus        98 l~~~~~~~i~~qi~~~L~~LH~~~-iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a  176 (327)
T cd08227          98 MSELAIAYILQGVLKALDYIHHMG-YVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLS  176 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccC
Confidence            467889999999999999999999 99999999999999999999999986543211           112245677999


Q ss_pred             cccccc--CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh----hHhhhc------c-------------c--
Q 019475           70 PEYMRT--GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF----LLLMDS------A-------------L--  122 (340)
Q Consensus        70 PE~~~~--~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~----~~~~~~------~-------------~--  122 (340)
                      ||++.+  ..++.++|||||||++|||++|..||.............    ....+.      .             .  
T Consensus       177 PE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (327)
T cd08227         177 PEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGE  256 (327)
T ss_pred             hHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCc
Confidence            999976  358899999999999999999999886432111100000    000000      0             0  


Q ss_pred             ---------------cCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          123 ---------------EGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       123 ---------------~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                                     ........++.+.+|+.+||+.||++|||+.++++|..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~  309 (327)
T cd08227         257 STTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSF  309 (327)
T ss_pred             ccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChh
Confidence                           00011234568999999999999999999999998743

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.94  E-value=3.9e-27  Score=207.78  Aligned_cols=155  Identities=24%  Similarity=0.282  Sum_probs=122.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||++......    ....++..|+|||++.+.
T Consensus       114 ~~~~~~~~~~~qi~~~L~~LH~~~-ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  192 (297)
T cd06659         114 LNEEQIATVCESVLQALCYLHSQG-VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRT  192 (297)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHccC
Confidence            467889999999999999999999 999999999999999999999999998754322    234678899999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|||||||++|+|++|..||........    ...+... ..........+..+.+++.+||..+|.+||++.++
T Consensus       193 ~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~l  268 (297)
T cd06659         193 PYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQA----MKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQEL  268 (297)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHH
Confidence            899999999999999999999988764321110    1111000 00111123456779999999999999999999999


Q ss_pred             HHHHH
Q 019475          156 VISLM  160 (340)
Q Consensus       156 l~~l~  160 (340)
                      +++..
T Consensus       269 l~~~~  273 (297)
T cd06659         269 LDHPF  273 (297)
T ss_pred             hhChh
Confidence            98743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.94  E-value=5.4e-27  Score=204.98  Aligned_cols=155  Identities=21%  Similarity=0.252  Sum_probs=123.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccC-C
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTG-R   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~-~   77 (340)
                      +++.++..++.|++.||.|||+.+ ++||||||+||+++.++.++|+|||++......  ....++..|++||++.++ .
T Consensus        94 l~~~~~~~~~~ql~~~l~~lH~~~-i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  172 (278)
T cd05606          94 FSEAEMRFYAAEIILGLEHMHNRF-VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVA  172 (278)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEcCCCCHHHEEECCCCCEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCC
Confidence            578899999999999999999999 999999999999999999999999998754332  345688999999999754 5


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NA  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~  152 (340)
                      ++.++||||+||++|+|++|+.||........  ....... .......+...+..+.+++.+||..+|.+||     ++
T Consensus       173 ~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~--~~~~~~~-~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~  249 (278)
T cd05606         173 YDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK--HEIDRMT-LTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGA  249 (278)
T ss_pred             CCcccchHhHHHHHHHHHhCCCCCCCCCccch--HHHHHHh-hccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCH
Confidence            88999999999999999999988865411111  1111111 1112234445678899999999999999999     99


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      .+++++.
T Consensus       250 ~~ll~~~  256 (278)
T cd05606         250 QEVKEHP  256 (278)
T ss_pred             HHHHhCc
Confidence            9998763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.94  E-value=6.5e-27  Score=205.80  Aligned_cols=153  Identities=16%  Similarity=0.191  Sum_probs=119.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..++.++.|++.||.|||+.+ ++|+||||+||+++.++.++|+|||++......    ....++..|+|||++...
T Consensus       125 ~~~~~~~~~~~qi~~al~~lH~~~-ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  203 (291)
T cd06639         125 LDEAMISYILYGALLGLQHLHNNR-IIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACE  203 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccCCCHHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhhcCC
Confidence            467788999999999999999999 999999999999999999999999998764432    234578899999998643


Q ss_pred             C-----CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-ccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           77 R-----VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-LEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        77 ~-----~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      .     ++.++|||||||++|+|++|+.||......    .....+.... .....+......+.++|.+||+.+|++||
T Consensus       204 ~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  279 (291)
T cd06639         204 QQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPV----KTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARP  279 (291)
T ss_pred             CCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHH----HHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCc
Confidence            3     678999999999999999999887653211    1111111110 11112334556799999999999999999


Q ss_pred             CHHHHHHH
Q 019475          151 NAKSLVIS  158 (340)
Q Consensus       151 s~~e~l~~  158 (340)
                      ++.++++|
T Consensus       280 s~~~il~~  287 (291)
T cd06639         280 SVTHLLEH  287 (291)
T ss_pred             CHHHHhcC
Confidence            99999886

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.94  E-value=4.8e-27  Score=203.74  Aligned_cols=153  Identities=24%  Similarity=0.379  Sum_probs=120.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC--------CcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK--------SYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~   72 (340)
                      +++.....++.|++.||.|||+++ ++|+||+|+||+++.++.++|+|||++.......        ...++..|++||+
T Consensus        99 ~~~~~~~~~~~ql~~al~~lh~~~-i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~  177 (267)
T cd06610          99 LDEAIIATVLKEVLKGLEYLHSNG-QIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEV  177 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHH
Confidence            467788899999999999999999 9999999999999999999999999987554332        2357889999999


Q ss_pred             cccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc---cccCCC-CchhHHHHHHHHHHhcccCCC
Q 019475           73 MRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS---ALEGHF-SNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        73 ~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~li~~cl~~~p~  147 (340)
                      +... .++.++|+|||||++|+|++|..||.......    ........   ...... ....+..+.+++.+||..+|+
T Consensus       178 ~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  253 (267)
T cd06610         178 MEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMK----VLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPS  253 (267)
T ss_pred             HccccCcCcccchHhHhHHHHHHHhCCCCccccChhh----hHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChh
Confidence            8876 68899999999999999999998875432111    11111111   111111 124567899999999999999


Q ss_pred             CCCCHHHHHHH
Q 019475          148 ERPNAKSLVIS  158 (340)
Q Consensus       148 ~Rps~~e~l~~  158 (340)
                      +|||+.+++.|
T Consensus       254 ~Rp~~~~ll~~  264 (267)
T cd06610         254 KRPTAEELLKH  264 (267)
T ss_pred             hCcCHHHHhhC
Confidence            99999999876

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.94  E-value=3e-27  Score=204.97  Aligned_cols=157  Identities=18%  Similarity=0.319  Sum_probs=121.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~   77 (340)
                      ++......++.|++.||.|||+ .+ ++|+||||+||+++.++.++|+|||.+......  ....++..|++||.+.+..
T Consensus        97 ~~~~~~~~~~~~l~~~l~~lH~~~~-i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  175 (265)
T cd06605          97 IPERILGKIAVAVLKGLTYLHEKHK-IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGND  175 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCCC-eecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcccCChhccCHHHHcCCC
Confidence            3566788999999999999999 88 999999999999999999999999998755332  2256788999999999889


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh-hhhhHhhhccccCCCCch-hHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS-KNFLLLMDSALEGHFSND-EGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ++.++||||||+++|+|++|..||.......... ......... .....+.. .+.++.++|.+||..+|.+|||+.++
T Consensus       176 ~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l  254 (265)
T cd06605         176 YSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNE-PPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKEL  254 (265)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcC-CCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHH
Confidence            9999999999999999999998876542100000 111111111 11122222 56789999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      +.+-
T Consensus       255 l~~~  258 (265)
T cd06605         255 LEHP  258 (265)
T ss_pred             hhCc
Confidence            8763

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.94  E-value=4e-27  Score=207.33  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=119.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||++......    ....++..|+|||.+.+.
T Consensus       103 l~~~~~~~i~~qi~~aL~~LH~~~-i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  181 (293)
T cd07843         103 FLQSEVKCLMLQLLSGVAHLHDNW-ILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGA  181 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeccCCHHHEEECCCCcEEEeecCceeeccCCccccccccccccccCchhhcCC
Confidence            467889999999999999999999 999999999999999999999999998865443    223567889999998765


Q ss_pred             C-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh--------------H-----------hhhccccCCCCch-
Q 019475           77 R-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL--------------L-----------LMDSALEGHFSND-  129 (340)
Q Consensus        77 ~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~--------------~-----------~~~~~~~~~~~~~-  129 (340)
                      . ++.++|+||||+++|+|++|..||..............              .           .....+...++.. 
T Consensus       182 ~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (293)
T cd07843         182 KEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALS  261 (293)
T ss_pred             ccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccC
Confidence            4 68899999999999999999988765421111000000              0           0000011112222 


Q ss_pred             hHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          130 EGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       130 ~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .++.+.++|.+||+.+|++|||+.|++.+
T Consensus       262 ~~~~~~~li~~~l~~~p~~R~t~~ell~~  290 (293)
T cd07843         262 LSDNGFDLLNRLLTYDPAKRISAEDALKH  290 (293)
T ss_pred             CChHHHHHHHHHhccCccccCCHHHHhcC
Confidence            46779999999999999999999999876

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=6.2e-27  Score=202.49  Aligned_cols=153  Identities=18%  Similarity=0.225  Sum_probs=122.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccccCCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTP   80 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~   80 (340)
                      +++..+..++.||+.||.|||+.+ ++||||+|+||+++.++.++|+|||+++.........++..|++||.+.+..++.
T Consensus        94 ~~~~~~~~i~~qi~~aL~~lH~~~-i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~  172 (260)
T cd05611          94 LPEDWAKQYIAEVVLGVEDLHQRG-IIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLAPETILGVGDDK  172 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHeEECCCCcEEEeecccceeccccccCCCCcCccChhhhcCCCCcc
Confidence            467788999999999999999999 9999999999999999999999999988765555667888999999998888899


Q ss_pred             ccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCCCCCH---HHH
Q 019475           81 ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARERPNA---KSL  155 (340)
Q Consensus        81 ~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~---~e~  155 (340)
                      ++||||||+++|+|++|..||.........    .......  ........++..+.+++.+||+.+|++||++   .|+
T Consensus       173 ~~Dv~slG~il~~l~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~  248 (260)
T cd05611         173 MSDWWSLGCVIFEFLFGYPPFHAETPDAVF----DNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEI  248 (260)
T ss_pred             hhhhHHHHHHHHHHHHCCCCCCCCCHHHHH----HHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHH
Confidence            999999999999999999988654322111    1111111  1112233467889999999999999999965   565


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      +.|
T Consensus       249 l~~  251 (260)
T cd05611         249 KSH  251 (260)
T ss_pred             HcC
Confidence            554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.94  E-value=9.2e-27  Score=200.80  Aligned_cols=152  Identities=21%  Similarity=0.258  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCC---CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..++.++.+++.||.|||+++ ++|+||+|+||+++.++ .++|+|||.+......   ....++..|+|||.+.+.
T Consensus        98 ~~~~~~~~~~~~i~~~l~~lh~~~-i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  176 (256)
T cd08220          98 LDEDTILHFFVQILLALHHVHTKL-ILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGK  176 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccccccCCcccCchhccCC
Confidence            467788999999999999999999 99999999999998654 5799999998865543   234578899999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++||||||+++|+|++|..||.........    .... .......+...+..+.+++.+||..+|.+|||+.+++
T Consensus       177 ~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll  251 (256)
T cd08220         177 PYNQKSDIWALGCVLYELASLKRAFEAANLPALV----LKIM-SGTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIM  251 (256)
T ss_pred             CCCcccchHHHHHHHHHHHhCCCCcccCchHHHH----HHHH-hcCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHh
Confidence            8899999999999999999999887654322111    1111 1112234455678899999999999999999999998


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      ++
T Consensus       252 ~~  253 (256)
T cd08220         252 AQ  253 (256)
T ss_pred             hC
Confidence            76

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.94  E-value=1.1e-26  Score=205.97  Aligned_cols=160  Identities=19%  Similarity=0.336  Sum_probs=121.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..++.||+.||.|||++ + ++|+||||+||+++.++.++|+|||++......  ....++..|++||++.+..
T Consensus        96 ~~~~~~~~~~~~i~~~l~~lH~~~~-i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  174 (308)
T cd06615          96 IPENILGKISIAVLRGLTYLREKHK-IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTH  174 (308)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhCC-EEECCCChHHEEEecCCcEEEccCCCcccccccccccCCCCcCccChhHhcCCC
Confidence            45678889999999999999984 6 999999999999999999999999998754332  3456788999999998888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh----------------------------hhHhhhccc---cCCC
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN----------------------------FLLLMDSAL---EGHF  126 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~---~~~~  126 (340)
                      ++.++|+|||||++|+|++|+.||............                            ..+..+...   ....
T Consensus       175 ~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (308)
T cd06615         175 YTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKL  254 (308)
T ss_pred             CCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccC
Confidence            999999999999999999999887643211110000                            000000000   0011


Q ss_pred             C-chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475          127 S-NDEGTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus       127 ~-~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                      + ...+.++.+|+.+||..+|++|||+.+++++.+-
T Consensus       255 ~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~  290 (308)
T cd06615         255 PSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFI  290 (308)
T ss_pred             cCcccCHHHHHHHHHHccCChhhCcCHHHHhcChhh
Confidence            1 1245679999999999999999999999988654

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=5.2e-27  Score=211.44  Aligned_cols=154  Identities=21%  Similarity=0.282  Sum_probs=121.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----CCCCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~--   74 (340)
                      |+..+.--+++|+++||.|||+++ |||||||.-|||++-+|.++|+|||.+-...    ...+++||+.|||||+..  
T Consensus       127 LtE~QIqvvc~q~ldALn~LHs~~-iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCE  205 (1187)
T KOG0579|consen  127 LTEDQIQVVCYQVLDALNWLHSQN-IIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCE  205 (1187)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhcc-hhhhhccccceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeec
Confidence            345667778999999999999999 9999999999999999999999999976433    236789999999999876  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc-cCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL-EGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                         ..+|+.++||||||+++.||..+.+|...-.  .+..  +..+-.... ..-.|...+..+.+|+.+||..+|..||
T Consensus       206 T~KD~PYDykaDiWSlGITLIEMAqiEPPHheln--pMRV--llKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp  281 (1187)
T KOG0579|consen  206 TFKDQPYDYKADIWSLGITLIEMAQIEPPHHELN--PMRV--LLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRP  281 (1187)
T ss_pred             cccCCCchhhhhHHhhhhHHHHHhccCCCccccc--hHHH--HHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCC
Confidence               3578999999999999999999997654321  1111  111111100 1112456678899999999999999999


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      ++.++++|.
T Consensus       282 ~aaqll~Hp  290 (1187)
T KOG0579|consen  282 PAAQLLKHP  290 (1187)
T ss_pred             CHHHHhhCc
Confidence            999999874

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.94  E-value=4e-27  Score=207.74  Aligned_cols=153  Identities=20%  Similarity=0.290  Sum_probs=122.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.|++.||.|||+.+ ++||||||+||+++.++.++|+|||++.......    ...+++.|++||.+.+.
T Consensus       112 ~~~~~~~~~~~~l~~~L~~LH~~~-i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  190 (297)
T cd06656         112 MDEGQIAAVCRECLQALDFLHSNQ-VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK  190 (297)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCC
Confidence            467789999999999999999999 9999999999999999999999999987654332    34578899999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh-hccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM-DSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|+|||||++|++++|..||........    ..... ........+...+..+.+++.+||..+|++||++.++
T Consensus       191 ~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  266 (297)
T cd06656         191 AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA----LYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKEL  266 (297)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchh----eeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            899999999999999999999988855321100    00000 0111112234456779999999999999999999999


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      ++|
T Consensus       267 l~~  269 (297)
T cd06656         267 LQH  269 (297)
T ss_pred             hcC
Confidence            987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.94  E-value=3.6e-27  Score=212.04  Aligned_cols=158  Identities=22%  Similarity=0.300  Sum_probs=136.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCc---cc--CCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY---ST--NLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~---~~--~~~y~aPE~~~~   75 (340)
                      |+..+.+.++.||+.||.|||++. +|||||..+|||+.....|||+|||+++.......+   .|  .+.||+||.+..
T Consensus       488 L~l~tL~ly~~Qi~talaYLeSkr-fVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINf  566 (974)
T KOG4257|consen  488 LPLRTLTLYCYQICTALAYLESKR-FVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINF  566 (974)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhc-hhhhhhhhhheeecCcceeeecccchhhhccccchhhccccccceeecCccccch
Confidence            456678899999999999999999 999999999999999999999999999987765332   22  467999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||.|||++||++. |..||.+-     .+......++.+-+.+.|+.+++.+..|+.+||+++|.+||.+.+
T Consensus       567 RrFTtASDVWMFgVCmWEIl~lGvkPfqgv-----kNsDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrfte  641 (974)
T KOG4257|consen  567 RRFTTASDVWMFGVCMWEILSLGVKPFQGV-----KNSDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTE  641 (974)
T ss_pred             hcccchhhHHHHHHHHHHHHHhcCCccccc-----cccceEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHH
Confidence            999999999999999999866 77788663     445555566666777889999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q 019475          155 LVISLMSLQK  164 (340)
Q Consensus       155 ~l~~l~~~~~  164 (340)
                      +...|+.+..
T Consensus       642 i~~~lsdv~q  651 (974)
T KOG4257|consen  642 IKAILSDVLQ  651 (974)
T ss_pred             HHHHHHHHHH
Confidence            9998877665

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.94  E-value=7.8e-27  Score=204.21  Aligned_cols=156  Identities=18%  Similarity=0.219  Sum_probs=118.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccccc-C
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT-G   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-~   76 (340)
                      ++|.++..++.||+.||.|||+++ ++||||+|+||+++. +.+||+|||+++.....   ....++..|+|||++.+ .
T Consensus        97 ~~~~~~~~~~~qi~~~L~~LH~~~-i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  174 (282)
T cd07831          97 LPEKRVKSYMYQLLKSLDHMHRNG-IFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDG  174 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceecccCHHHEEEcC-CCeEEEecccccccccCCCcCCCCCCcccCChhHhhcCC
Confidence            478899999999999999999999 999999999999999 99999999998765433   23457889999997654 4


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh----------hhHhhhcc--ccCC-----------CCchhHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN----------FLLLMDSA--LEGH-----------FSNDEGTE  133 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~-----------~~~~~~~~  133 (340)
                      .++.++|||||||++|||++|..||+...........          ........  ....           .....+..
T Consensus       175 ~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (282)
T cd07831         175 YYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAE  254 (282)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHH
Confidence            5788999999999999999999888654221100000          00000000  0000           01234688


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.++|.+||..+|++|||+.++++|
T Consensus       255 ~~~li~~~l~~~P~~R~~~~~~l~~  279 (282)
T cd07831         255 GLDLLKKLLAYDPDERITAKQALRH  279 (282)
T ss_pred             HHHHHHHHhccCcccccCHHHHhhC
Confidence            9999999999999999999999876

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.94  E-value=1.2e-26  Score=202.35  Aligned_cols=155  Identities=19%  Similarity=0.275  Sum_probs=121.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++..++.++.||+.||.|||+++ ++||||||+||+++.++.++++|||++......     ....++..|++||.+.+
T Consensus       114 l~~~~~~~~~~~l~~~l~~LH~~~-i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  192 (275)
T cd05046         114 LSTKQKVALCTQIALGMDHLSNAR-FVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQE  192 (275)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhcC-cccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhcc
Confidence            468899999999999999999999 999999999999999999999999998643321     22345677999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ...+.++||||||+++|+|++ |..||.......    ..............+...+..+.+++.+||..+|++|||+.+
T Consensus       193 ~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~  268 (275)
T cd05046         193 DDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEE----VLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSE  268 (275)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCccccchHH----HHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHH
Confidence            888999999999999999998 666664322111    111111111122234456788999999999999999999999


Q ss_pred             HHHHHH
Q 019475          155 LVISLM  160 (340)
Q Consensus       155 ~l~~l~  160 (340)
                      ++..|.
T Consensus       269 ~l~~l~  274 (275)
T cd05046         269 LVSALG  274 (275)
T ss_pred             HHHHhc
Confidence            998874

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=7.3e-27  Score=207.93  Aligned_cols=153  Identities=21%  Similarity=0.245  Sum_probs=121.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------------   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------------   58 (340)
                      +++..+..++.||+.||.|||+.+ ++|+||||+||+++.++.++|+|||++......                      
T Consensus       100 l~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (316)
T cd05574         100 LSEEVARFYAAEVLLALEYLHLLG-IVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPS  178 (316)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eeccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccch
Confidence            466788899999999999999999 999999999999999999999999987654321                      


Q ss_pred             -----------CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCC
Q 019475           59 -----------KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS  127 (340)
Q Consensus        59 -----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (340)
                                 ....|+..|+|||++.+..++.++||||||+++|+|++|..||......    ..+..+..........
T Consensus       179 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~----~~~~~~~~~~~~~~~~  254 (316)
T cd05574         179 ETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRD----ETFSNILKKEVTFPGS  254 (316)
T ss_pred             hhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchH----HHHHHHhcCCccCCCc
Confidence                       1235678899999999888999999999999999999999988654322    1122222222211112


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCC----HHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPN----AKSLVIS  158 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps----~~e~l~~  158 (340)
                      ...+..+.+++.+||..+|++|||    +.+++.|
T Consensus       255 ~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~  289 (316)
T cd05574         255 PPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQH  289 (316)
T ss_pred             cccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcC
Confidence            235788999999999999999999    8888876

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=7.8e-27  Score=203.25  Aligned_cols=153  Identities=16%  Similarity=0.229  Sum_probs=118.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++..+..++.|++.||.|||+++ ++|+||+|+||+++.++.++|+|||.+......    ....++..|+|||++.+ 
T Consensus       110 ~~~~~~~~~~~ql~~al~~lH~~~-i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  188 (275)
T cd06608         110 LKEEWIAYILRETLRGLAYLHENK-VIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACD  188 (275)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-cccCCCCHHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhHhccc
Confidence            456788899999999999999999 999999999999999999999999998754432    23457889999998854 


Q ss_pred             ----CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc-cCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           76 ----GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL-EGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        76 ----~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                          ..++.++|||||||++|+|++|..||......    .....+..... ....+...+..+.+|+.+||..||++||
T Consensus       189 ~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp  264 (275)
T cd06608         189 EQPDASYDARSDVWSLGITAIELADGKPPLCDMHPM----RALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRP  264 (275)
T ss_pred             ccccCCccccccHHHhHHHHHHHHhCCCCccccchH----HHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCc
Confidence                24678899999999999999999888543111    11111111111 1111223567899999999999999999


Q ss_pred             CHHHHHHH
Q 019475          151 NAKSLVIS  158 (340)
Q Consensus       151 s~~e~l~~  158 (340)
                      |+.+++++
T Consensus       265 t~~~ll~~  272 (275)
T cd06608         265 FMEELLEH  272 (275)
T ss_pred             CHHHHhcC
Confidence            99999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.94  E-value=1.1e-26  Score=204.90  Aligned_cols=156  Identities=20%  Similarity=0.338  Sum_probs=120.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+. + ++||||+|+||+++.++.+||+|||++.......   ...++..|+|||.+.+.
T Consensus       111 l~~~~~~~i~~~i~~~l~~lH~~~~-i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  189 (296)
T cd06618         111 IPEDILGKMTVAIVKALHYLKEKHG-VIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPP  189 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhCC-EecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCCCCCccccCHhhcCCC
Confidence            46788899999999999999984 7 9999999999999999999999999987654322   23467789999998755


Q ss_pred             C----CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc-CCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           77 R----VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE-GHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        77 ~----~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .    ++.++||||||+++|+|++|+.||.......   ............ .......+.++.+|+.+||..+|.+||+
T Consensus       190 ~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~  266 (296)
T cd06618         190 DPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEF---EVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPK  266 (296)
T ss_pred             CCccccccchhHHHHHHHHHHHHhCCCCCCcchhHH---HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCC
Confidence            3    7889999999999999999998875421111   111112211111 1111235678999999999999999999


Q ss_pred             HHHHHHHHH
Q 019475          152 AKSLVISLM  160 (340)
Q Consensus       152 ~~e~l~~l~  160 (340)
                      +.+++++..
T Consensus       267 ~~~il~~~~  275 (296)
T cd06618         267 YRELLQHPF  275 (296)
T ss_pred             HHHHhcChh
Confidence            999998754

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=4.1e-27  Score=233.15  Aligned_cols=152  Identities=15%  Similarity=0.134  Sum_probs=111.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-------------------CCCeEEecccCcccCCCC---
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-------------------DGNPRLSSFGLMKNSRDG---   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-------------------~~~~kl~Dfg~~~~~~~~---   58 (340)
                      +++.+++.|+.||+.||.|||++| |+||||||+||||+.                   ++.+|++|||+++.....   
T Consensus        77 ~~~~~~~~i~~qi~~al~~lH~~g-IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~  155 (793)
T PLN00181         77 VDAFECFHVFRQIVEIVNAAHSQG-IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSER  155 (793)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCC-eeeccCCchhEEEcccCcEEEeeccccCcccccccCccccccccccccccccccc
Confidence            467789999999999999999999 999999999999954                   345667777776532110   


Q ss_pred             -----------------CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc
Q 019475           59 -----------------KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA  121 (340)
Q Consensus        59 -----------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~  121 (340)
                                       ....+|+.|||||++.+..++.++|||||||++|||++|.+|+..... .+     ..+....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~-~~-----~~~~~~~  229 (793)
T PLN00181        156 RIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR-TM-----SSLRHRV  229 (793)
T ss_pred             chhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH-HH-----HHHHHhh
Confidence                             013468889999999999999999999999999999998866543211 11     0110001


Q ss_pred             ccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       122 ~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ..... .........++.+||..+|.+||++.++++|..
T Consensus       230 ~~~~~-~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~~  267 (793)
T PLN00181        230 LPPQI-LLNWPKEASFCLWLLHPEPSCRPSMSELLQSEF  267 (793)
T ss_pred             cChhh-hhcCHHHHHHHHHhCCCChhhCcChHHHhhchh
Confidence            11111 111344678899999999999999999998754

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.94  E-value=1.2e-26  Score=201.94  Aligned_cols=157  Identities=21%  Similarity=0.281  Sum_probs=119.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++..+..++.||+.||.|||+++ ++||||+|+||+++.++.++++|||+++.....      ....++..|++||.+.
T Consensus       105 l~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  183 (272)
T cd06629         105 FEEQLVRFFTEQVLEGLAYLHSKG-ILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIH  183 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-eeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhc
Confidence            466788889999999999999999 999999999999999999999999998754322      2235678899999987


Q ss_pred             cCC--CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGR--VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~--~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +..  ++.++|+||||+++|++++|..|+............................++..+.+++.+||..+|..|||+
T Consensus       184 ~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  263 (272)
T cd06629         184 SYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTA  263 (272)
T ss_pred             cccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCH
Confidence            654  788999999999999999999887543211100000000001111111223456789999999999999999999


Q ss_pred             HHHHHH
Q 019475          153 KSLVIS  158 (340)
Q Consensus       153 ~e~l~~  158 (340)
                      .++++|
T Consensus       264 ~~il~~  269 (272)
T cd06629         264 RELLQH  269 (272)
T ss_pred             HHHhhC
Confidence            999886

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.94  E-value=1.9e-26  Score=202.28  Aligned_cols=157  Identities=17%  Similarity=0.196  Sum_probs=121.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---CcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..++.++.||+.||.|||+++ ++|+||+|+||+++.++.++|+|||.+.......   ...++..|++||++.+..
T Consensus       104 l~~~~~~~~~~~i~~al~~LH~~~-i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~  182 (287)
T cd07838         104 LPPETIKDLMRQLLRGVDFLHSHR-IVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQSS  182 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeccCChhhEEEccCCCEEEeccCcceeccCCcccccccccccccChHHhccCC
Confidence            578899999999999999999999 9999999999999999999999999987754332   234678899999999888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHh------------------hhcccc---CCCCchhHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL------------------MDSALE---GHFSNDEGTELVR  136 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~------------------~~~~~~---~~~~~~~~~~~~~  136 (340)
                      ++.++|+|||||++|+|++|.+||........-.......                  ......   ....+..+..+.+
T Consensus       183 ~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (287)
T cd07838         183 YATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLD  262 (287)
T ss_pred             CCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHH
Confidence            9999999999999999999988776543211100000000                  000000   0011234577899


Q ss_pred             HHHHhcccCCCCCCCHHHHHHH
Q 019475          137 LASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       137 li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +|.+||..||.+||++.+++.|
T Consensus       263 li~~~l~~dp~~Rp~~~~il~~  284 (287)
T cd07838         263 LLKKMLTFNPHKRISAFEALQH  284 (287)
T ss_pred             HHHHHhccCCccCCCHHHHhcC
Confidence            9999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.94  E-value=1.1e-26  Score=199.52  Aligned_cols=152  Identities=22%  Similarity=0.296  Sum_probs=122.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.|++.||.+||+++ ++||||+|+||+++.++.++|+|||.+......   ....++..|++||.+.+..
T Consensus        95 ~~~~~~~~i~~~i~~~l~~lh~~~-i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~  173 (253)
T cd05122          95 LTESQIAYVCKELLKGLEYLHSNG-IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKP  173 (253)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCC-EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcCCC
Confidence            477889999999999999999999 999999999999999999999999998876654   3456788999999999888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCc--hhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSN--DEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ++.++|+||||+++|+|++|+.|+..........    ... .......+.  ..+..+.+++.+||..+|++|||+.++
T Consensus       174 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~  248 (253)
T cd05122         174 YDYKADIWSLGITAIELAEGKPPYSELPPMKALF----KIA-TNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQL  248 (253)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCCCchHHHHH----HHH-hcCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHH
Confidence            8999999999999999999998876542111100    000 011111122  226789999999999999999999999


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      ++|
T Consensus       249 l~~  251 (253)
T cd05122         249 LKH  251 (253)
T ss_pred             hcC
Confidence            876

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.94  E-value=1.8e-26  Score=224.55  Aligned_cols=154  Identities=21%  Similarity=0.254  Sum_probs=117.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC------CceecccCCCCeEEcC-----------------CCCeEEecccCcccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG------RALYHDLNAYRILFDK-----------------DGNPRLSSFGLMKNSRD   57 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~------~iih~dlkp~Nil~~~-----------------~~~~kl~Dfg~~~~~~~   57 (340)
                      |++..++.|+.||+.||.|||+.+      +||||||||+||||+.                 .+.+||+|||++.....
T Consensus       115 L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~  194 (1021)
T PTZ00266        115 IEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGI  194 (1021)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccc
Confidence            567889999999999999999842      2999999999999964                 23589999999886543


Q ss_pred             C---CCcccCCccCCcccccc--CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHH
Q 019475           58 G---KSYSTNLAFTPPEYMRT--GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGT  132 (340)
Q Consensus        58 ~---~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (340)
                      .   ....+|+.|+|||++.+  ..++.++||||||||+|+|++|..||......    ..+...+..... ......+.
T Consensus       195 ~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~----~qli~~lk~~p~-lpi~~~S~  269 (1021)
T PTZ00266        195 ESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNF----SQLISELKRGPD-LPIKGKSK  269 (1021)
T ss_pred             cccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcH----HHHHHHHhcCCC-CCcCCCCH
Confidence            2   34468999999999864  34789999999999999999999988543211    111111111111 11123467


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ++.+||.+||..+|.+||++.+++.+-
T Consensus       270 eL~dLI~~~L~~dPeeRPSa~QlL~h~  296 (1021)
T PTZ00266        270 ELNILIKNLLNLSAKERPSALQCLGYQ  296 (1021)
T ss_pred             HHHHHHHHHhcCChhHCcCHHHHhccH
Confidence            899999999999999999999999763

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.94  E-value=8.7e-27  Score=204.34  Aligned_cols=156  Identities=17%  Similarity=0.248  Sum_probs=118.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.++..++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||.+......     ....++..|+|||.+.+
T Consensus        96 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  174 (286)
T cd07832          96 LPEAQVKSYMRMLLKGVAYMHANG-IMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYG  174 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeec
Confidence            467889999999999999999999 999999999999999999999999998865433     23467889999999875


Q ss_pred             CC-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh-----------------c-ccc-------CCCCch
Q 019475           76 GR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD-----------------S-ALE-------GHFSND  129 (340)
Q Consensus        76 ~~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~-------~~~~~~  129 (340)
                      .. ++.++||||+||++|+|++|.++|........- ......+.                 . ...       ....+.
T Consensus       175 ~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (286)
T cd07832         175 ARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQL-AIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPD  253 (286)
T ss_pred             cccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHH-HHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCC
Confidence            44 688999999999999999997766543211100 00000000                 0 000       001123


Q ss_pred             hHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          130 EGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       130 ~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+..+.++|.+||..+|++|||+++++.|
T Consensus       254 ~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         254 ASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             ccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            45789999999999999999999999987

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=1.4e-27  Score=230.02  Aligned_cols=148  Identities=17%  Similarity=0.278  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCccccccCC--
Q 019475            8 RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEYMRTGR--   77 (340)
Q Consensus         8 ~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~~~~~--   77 (340)
                      .+-.|++.|+.|||++| ||||||||.||+++.+|.+|++|||.+......        ....||+.|||||++.+..  
T Consensus      1338 vyt~qll~gla~LH~~g-IVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~k 1416 (1509)
T KOG4645|consen 1338 VYTKQLLEGLAYLHEHG-IVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGK 1416 (1509)
T ss_pred             HHHHHHHHHHHHHHhcC-ceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccC
Confidence            35689999999999999 999999999999999999999999999876544        2457899999999997643  


Q ss_pred             -CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 -VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 -~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                       -..+.||||||||+.||+||+.|+..-.    ..-.+.-.+...-.+.+|...+.+..+||.+||..||.+|.++.+++
T Consensus      1417 G~~~A~DiWslGCVVlEM~tGkrPW~~~d----ne~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qll 1492 (1509)
T KOG4645|consen 1417 GHGGAADIWSLGCVVLEMATGKRPWAELD----NEWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLL 1492 (1509)
T ss_pred             CCCcchhhhcccceEEEeecCCCchhhcc----chhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHH
Confidence             4668999999999999999999874421    11222333334445667888999999999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      +|-.
T Consensus      1493 e~~f 1496 (1509)
T KOG4645|consen 1493 EHAF 1496 (1509)
T ss_pred             Hhhc
Confidence            8743

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.94  E-value=6.9e-27  Score=210.33  Aligned_cols=157  Identities=15%  Similarity=0.236  Sum_probs=119.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~   78 (340)
                      +++..+..++.|++.||.|||+++ ++||||||+||+++.++.++|+|||+++..... ....++..|+|||.+.+ ..+
T Consensus       114 ~~~~~~~~~~~qi~~aL~~LH~~~-i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  192 (342)
T cd07879         114 LSEDKVQYLVYQMLCGLKYIHSAG-IIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHY  192 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCcccc
Confidence            467788899999999999999999 999999999999999999999999998765433 23456888999999876 458


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh----------hhH---------hhh---ccccCC---CCchhHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN----------FLL---------LMD---SALEGH---FSNDEGTE  133 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~----------~~~---------~~~---~~~~~~---~~~~~~~~  133 (340)
                      +.++|||||||++|||++|+.||........-...          +..         ...   ......   ..+..+..
T Consensus       193 ~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (342)
T cd07879         193 NQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQ  272 (342)
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHH
Confidence            88999999999999999999988754211100000          000         000   000000   01134567


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.+||.+||+.||.+||++.+++.|
T Consensus       273 ~~~li~~~l~~dP~~R~~~~e~l~h  297 (342)
T cd07879         273 AVDLLEKMLELDVDKRLTATEALEH  297 (342)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHhcC
Confidence            8999999999999999999999977

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.94  E-value=1.3e-26  Score=204.33  Aligned_cols=156  Identities=16%  Similarity=0.222  Sum_probs=118.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-CCCeEEecccCcccCCCC----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~   75 (340)
                      +++..++.++.||+.||.|||+++ ++||||+|+||+++. ++.+||+|||++......    ....+++.|+|||++.+
T Consensus       107 ~~~~~~~~~~~qi~~~L~~LH~~~-i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  185 (295)
T cd07837         107 LPAKTIKSFMYQLLKGVAHCHKHG-VMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLG  185 (295)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCCChHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChHHhhC
Confidence            467889999999999999999999 999999999999998 889999999998754322    22356788999998865


Q ss_pred             -CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh-c------------------ccc----CCCCchhH
Q 019475           76 -GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD-S------------------ALE----GHFSNDEG  131 (340)
Q Consensus        76 -~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~----~~~~~~~~  131 (340)
                       ..++.++||||||+++|+|++|..||.......... .+...+. +                  ...    ....+..+
T Consensus       186 ~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (295)
T cd07837         186 STHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLL-HIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLS  264 (295)
T ss_pred             CCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHH-HHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccC
Confidence             457899999999999999999998886542211100 0000000 0                  000    00112356


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ..+.++|.+||..+|.+||++.+++.|
T Consensus       265 ~~~~~~i~~~l~~~P~~R~~~~eil~~  291 (295)
T cd07837         265 PEGLDLLQKMLRYDPAKRISAKAALTH  291 (295)
T ss_pred             HHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            779999999999999999999999876

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.94  E-value=7.8e-27  Score=209.54  Aligned_cols=157  Identities=16%  Similarity=0.260  Sum_probs=118.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+||+++.++.++|+|||++......       ....++..|+|||.+
T Consensus       103 l~~~~~~~i~~ql~~aL~~LH~~~-ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (336)
T cd07849         103 LSNDHIQYFLYQILRGLKYIHSAN-VLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIM  181 (336)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHh
Confidence            467788999999999999999999 999999999999999999999999998764432       123568889999987


Q ss_pred             cc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh-----------hhhhHhhhc-------ccc--CC-----CC
Q 019475           74 RT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS-----------KNFLLLMDS-------ALE--GH-----FS  127 (340)
Q Consensus        74 ~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~-----------~~~~~~~~~-------~~~--~~-----~~  127 (340)
                      .+ ..++.++|||||||++|+|++|+.||..........           .....+...       ...  ..     ..
T Consensus       182 ~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (336)
T cd07849         182 LNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLF  261 (336)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHh
Confidence            54 468899999999999999999998886532111000           000000000       000  00     01


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +..+.++.++|.+||+.+|++|||+.++++|
T Consensus       262 ~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         262 PNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             cccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            2235678999999999999999999999988

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.94  E-value=1.5e-26  Score=203.01  Aligned_cols=153  Identities=14%  Similarity=0.197  Sum_probs=118.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc--
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT--   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~--   75 (340)
                      ++..+..++.|++.||.|||+++ ++||||||+||+++.++.++|+|||+++.....    ....+++.|+|||++.+  
T Consensus       122 ~~~~~~~~~~~i~~~l~~lH~~~-i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  200 (286)
T cd06638         122 EEPIIAYILHEALMGLQHLHVNK-TIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQ  200 (286)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCC-ccccCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhhchhh
Confidence            45677889999999999999999 999999999999999999999999998765432    23467899999999853  


Q ss_pred             ---CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-ccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           76 ---GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-LEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        76 ---~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                         ..++.++|||||||++|+|++|+.|+.......    ......... .....+...+..+.+++.+||+.+|++|||
T Consensus       201 ~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  276 (286)
T cd06638         201 QLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMR----ALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPT  276 (286)
T ss_pred             hccccccchhhhhhHHHHHHHHhcCCCCCCCCchhH----HHhhccccCCCcccCCCCcCHHHHHHHHHHccCCcccCCC
Confidence               447889999999999999999998875432110    011110000 011122334567999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++++
T Consensus       277 ~~ell~~~  284 (286)
T cd06638         277 VSDLLQHV  284 (286)
T ss_pred             HHHHhhcc
Confidence            99999875

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.94  E-value=1.2e-26  Score=207.85  Aligned_cols=158  Identities=17%  Similarity=0.231  Sum_probs=122.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++..++.++.||+.||.|||++| ++||||||.||+++.++.++|+|||.+.......       ...++..|+|||.+
T Consensus       100 l~~~~~~~i~~~l~~~l~~LH~~g-i~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  178 (330)
T cd07834         100 LTDDHIQYFLYQILRGLKYLHSAN-VIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELL  178 (330)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceee
Confidence            467888999999999999999999 9999999999999999999999999988655432       33567889999999


Q ss_pred             ccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh-------------------hHhhhcc-c-----cCCCC
Q 019475           74 RTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-------------------LLLMDSA-L-----EGHFS  127 (340)
Q Consensus        74 ~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~-------------------~~~~~~~-~-----~~~~~  127 (340)
                      .+. .++.++|+||||+++|+|++|..||.............                   ...+... .     .....
T Consensus       179 ~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (330)
T cd07834         179 LSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLF  258 (330)
T ss_pred             ecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhc
Confidence            887 78999999999999999999999886543211100000                   0000000 0     00011


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +..+..+.++|.+||+.+|.+|||+.+++.|.
T Consensus       259 ~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  290 (330)
T cd07834         259 PGASPEAIDLLEKMLVFDPKKRITADEALAHP  290 (330)
T ss_pred             ccCCHHHHHHHHHHccCChhhCCCHHHHHhCc
Confidence            23467899999999999999999999999873

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.94  E-value=2.4e-27  Score=202.17  Aligned_cols=157  Identities=16%  Similarity=0.191  Sum_probs=119.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC--------------------CCCeEEecccCcccCCCC-CC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK--------------------DGNPRLSSFGLMKNSRDG-KS   60 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~--------------------~~~~kl~Dfg~~~~~~~~-~~   60 (340)
                      +...+..|+.|++++++|||+.+ ++|-||||+|||+..                    +..|+|+|||.++..... .+
T Consensus       190 pi~~ir~m~~QL~~sv~fLh~~k-l~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~  268 (415)
T KOG0671|consen  190 PIDHIRHMGYQLLESVAFLHDLK-LTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHST  268 (415)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcc-eeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCcce
Confidence            55678899999999999999999 999999999999832                    235899999999877665 45


Q ss_pred             cccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHH----hh------------hhhhhHhhhcc-c-
Q 019475           61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDL----IR------------SKNFLLLMDSA-L-  122 (340)
Q Consensus        61 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~----~~------------~~~~~~~~~~~-~-  122 (340)
                      .+.|.+|+|||++.+-+++.++||||+|||++|+.+|...|+.+....    ++            .....+.+... + 
T Consensus       269 iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rld  348 (415)
T KOG0671|consen  269 IVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLD  348 (415)
T ss_pred             eeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhccccc
Confidence            578999999999999999999999999999999999998887653111    00            00000000000 0 


Q ss_pred             ------cC----------------CCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          123 ------EG----------------HFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       123 ------~~----------------~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                            .+                ...+....++.+|+.+||.+||.+|+|+.|++.|.
T Consensus       349 w~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~Hp  407 (415)
T KOG0671|consen  349 WPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSHP  407 (415)
T ss_pred             CccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcCH
Confidence                  00                01123345799999999999999999999999873

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.94  E-value=7.9e-27  Score=194.74  Aligned_cols=157  Identities=16%  Similarity=0.204  Sum_probs=122.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      |+.++.-.|+.|++.|++|||+.| |+||||||+||++..+..+||.|||+++.....   +.++.|..|.|||++.+..
T Consensus       115 lDH~tis~i~yq~~~~ik~lhs~~-IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~  193 (369)
T KOG0665|consen  115 LDHETISYILYQMLCGIKHLHSAG-IIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMG  193 (369)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcc-eeecccCcccceecchhheeeccchhhcccCcccccCchhheeeccCchheeccC
Confidence            355677889999999999999999 999999999999999999999999999876655   3457788999999999989


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhH-H--------------------------------hhhhhhhHhhhccccC
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALD-L--------------------------------IRSKNFLLLMDSALEG  124 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~  124 (340)
                      +...+||||+||++.||++|+..|++...- .                                .....+.+.+......
T Consensus       194 ~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~  273 (369)
T KOG0665|consen  194 YKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFP  273 (369)
T ss_pred             CcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCccccc
Confidence            999999999999999999999888764100 0                                0001111111111110


Q ss_pred             ---CCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          125 ---HFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       125 ---~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                         +.+.-......+++.+||..+|++|.|++++|.|
T Consensus       274 ~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  274 VVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             ccccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence               1111234568899999999999999999999988

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.94  E-value=1.3e-26  Score=201.00  Aligned_cols=153  Identities=16%  Similarity=0.248  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----------CCCcccCCccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----------GKSYSTNLAFTPP   70 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----------~~~~~~~~~y~aP   70 (340)
                      +++..+..++.|++.||+|||+.+ ++|+||+|+||+++.++.++|+|||++.....          .....++..|+||
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (265)
T cd06631          99 LPEPVFCKYTKQILDGVAYLHNNC-VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAP  177 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccCh
Confidence            456788899999999999999999 99999999999999999999999999875421          1234578899999


Q ss_pred             cccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           71 EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        71 E~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                      |++.+..++.++|+|||||++|+|++|..||......  .  ........ ......+...+..+.++|.+||..+|.+|
T Consensus       178 e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  253 (265)
T cd06631         178 EVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRL--A--AMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHER  253 (265)
T ss_pred             hhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChH--H--HHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccC
Confidence            9999888999999999999999999999887542111  1  11111111 12223455667889999999999999999


Q ss_pred             CCHHHHHHH
Q 019475          150 PNAKSLVIS  158 (340)
Q Consensus       150 ps~~e~l~~  158 (340)
                      |++.+++.+
T Consensus       254 p~~~~~l~~  262 (265)
T cd06631         254 PSALQLLRH  262 (265)
T ss_pred             CCHHHHhcC
Confidence            999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.94  E-value=1.1e-26  Score=203.60  Aligned_cols=157  Identities=18%  Similarity=0.259  Sum_probs=118.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..++.++.|++.||+|||+++ ++|+||+|+||+++.++.+||+|||++......    ....++..|+|||++.+.
T Consensus        97 l~~~~~~~~~~~i~~~l~~lh~~~-i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  175 (284)
T cd07860          97 IPLPLIKSYLFQLLQGLAFCHSHR-VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC  175 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEECCCCCEEEeeccchhhcccCccccccccccccccCCeEEecC
Confidence            467889999999999999999999 999999999999999999999999998755432    223457889999988765


Q ss_pred             C-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh--------------Hh------hhcccc---CCCCchhHH
Q 019475           77 R-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL--------------LL------MDSALE---GHFSNDEGT  132 (340)
Q Consensus        77 ~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~--------------~~------~~~~~~---~~~~~~~~~  132 (340)
                      . ++.++|||||||++|+|+||+.||..............              ..      +.....   .......+.
T Consensus       176 ~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (284)
T cd07860         176 KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDE  255 (284)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCH
Confidence            4 58899999999999999999988865421110000000              00      000000   001123456


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+.++|.+||..||.+|||+.+++.|
T Consensus       256 ~~~~li~~~l~~~P~~Rpt~~~~l~~  281 (284)
T cd07860         256 DGRDLLSQMLHYDPNKRISAKAALAH  281 (284)
T ss_pred             HHHHHHHHhcCCCcccCCCHHHHhcC
Confidence            78899999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.94  E-value=2e-26  Score=198.57  Aligned_cols=152  Identities=16%  Similarity=0.202  Sum_probs=124.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~   78 (340)
                      +++.+++.++.|++.||.|||++| ++|+||+|+||+++.++.+||+|||++......  ....++..|++||.+.+..+
T Consensus       100 ~~~~~~~~~~~~l~~al~~lh~~~-i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~  178 (256)
T cd08530         100 IPEQEIWRIFIQLLRGLQALHEQK-ILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPY  178 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-cccCCCCcceEEEecCCcEEEeeccchhhhccCCcccccCCccccCHHHHCCCCC
Confidence            467788999999999999999999 999999999999999999999999998765443  23456889999999998889


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.++|+||||+++|+|++|+.||........     ............+...+.++.+++.+||..+|++|||+.+++++
T Consensus       179 ~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         179 SYKSDIWSLGCLLYEMATFAPPFEARSMQDL-----RYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-----HHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            9999999999999999999988865432211     11111222223444667889999999999999999999999876

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.94  E-value=6.8e-27  Score=205.05  Aligned_cols=156  Identities=15%  Similarity=0.309  Sum_probs=119.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++|.+++.++.||+.||.|||+.+ ++|+||+|+||+++.++.++|+|||++......    ....++..|++||++.+.
T Consensus        97 ~~~~~~~~~~~~i~~~l~~LH~~~-i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  175 (286)
T cd07846          97 LDESRVRKYLFQILRGIEFCHSHN-IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGD  175 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccc
Confidence            468899999999999999999999 999999999999999999999999998765432    223567889999998753


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH-----------hh------hccccC---------CCCch
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL-----------LM------DSALEG---------HFSND  129 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~-----------~~------~~~~~~---------~~~~~  129 (340)
                       .++.++||||||+++|+|++|++||........ ......           ..      ......         ...+.
T Consensus       176 ~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (286)
T cd07846         176 TKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQ-LYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPK  254 (286)
T ss_pred             cccCchHhHHHHHHHHHHHHcCCCCCCCCchHHH-HHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCC
Confidence             467899999999999999999988765421110 000000           00      000000         01224


Q ss_pred             hHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          130 EGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       130 ~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+..+.+|+.+||..+|++||++.++++|
T Consensus       255 ~~~~~~~li~~~l~~~P~~Rp~~~~il~~  283 (286)
T cd07846         255 LSGLVLDLAKQCLRIDPDDRPSSSQLLHH  283 (286)
T ss_pred             cCHHHHHHHHHHhcCCcccchhHHHHhcC
Confidence            56789999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.1e-26  Score=207.97  Aligned_cols=154  Identities=19%  Similarity=0.221  Sum_probs=117.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      ++..++..++.||+.||+|||+++ |+||||||+|||++.++.+||+|||++.......     ...||+.|+|||++.+
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  177 (331)
T cd05597          99 LPEDMARFYLAEMVLAIDSVHQLG-YVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQA  177 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhh
Confidence            456778889999999999999999 9999999999999999999999999987654322     2358999999999863


Q ss_pred             -----CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--cc-CCCCchhHHHHHHHHHHhcccCCC
Q 019475           76 -----GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LE-GHFSNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        76 -----~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~li~~cl~~~p~  147 (340)
                           ..++.++|||||||++|+|++|+.||.........    ..+....  .. .......+..+.++|.+||..+++
T Consensus       178 ~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~~~  253 (331)
T cd05597         178 MEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETY----GKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPET  253 (331)
T ss_pred             ccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHH----HHHHcCCCcccCCCccCCCCHHHHHHHHHHccCccc
Confidence                 35788999999999999999999988664322111    1111111  10 111223577899999998865444


Q ss_pred             C--CCCHHHHHHHH
Q 019475          148 E--RPNAKSLVISL  159 (340)
Q Consensus       148 ~--Rps~~e~l~~l  159 (340)
                      +  |+++.++++|.
T Consensus       254 r~~r~~~~~~l~hp  267 (331)
T cd05597         254 RLGRNGLQDFKDHP  267 (331)
T ss_pred             ccCCCCHHHHhcCC
Confidence            3  78999999884

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.94  E-value=1.6e-26  Score=199.38  Aligned_cols=153  Identities=20%  Similarity=0.260  Sum_probs=122.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..++.||+.||.|||+.+ ++|+||+|+||+++.++.+||+|||.+......   ....++..|++||.+....
T Consensus        99 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~  177 (258)
T cd06632          99 FPEPVIRLYTRQILLGLEYLHDRN-TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQG  177 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEECCCCCEEEccCccceeccccccccccCCCcceeCHHHhcCCC
Confidence            467788899999999999999999 999999999999999999999999998764433   3445788899999987666


Q ss_pred             -CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 -VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 -~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                       ++.++|+|||||++|+|++|+.||......    ...............+...++.+.+++.+||..+|.+||++.+++
T Consensus       178 ~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l  253 (258)
T cd06632         178 GYGLAADIWSLGCTVLEMATGKPPWSQLEGV----AAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELL  253 (258)
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCcccCcHH----HHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence             889999999999999999999887553211    111111111112234455678899999999999999999999998


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      .+
T Consensus       254 ~~  255 (258)
T cd06632         254 EH  255 (258)
T ss_pred             cC
Confidence            75

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.94  E-value=8.2e-27  Score=208.98  Aligned_cols=154  Identities=18%  Similarity=0.223  Sum_probs=118.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMR-   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~-   74 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||++......     ....||+.|+|||++. 
T Consensus        99 l~~~~~~~~~~qi~~al~~lH~~~-iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~  177 (332)
T cd05623          99 LPEDMARFYLAEMVIAIDSVHQLH-YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQA  177 (332)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEecCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhc
Confidence            456778889999999999999999 999999999999999999999999998754322     2346899999999986 


Q ss_pred             ----cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCC---CchhHHHHHHHHHHhcccCCC
Q 019475           75 ----TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHF---SNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        75 ----~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~cl~~~p~  147 (340)
                          ...++.++|||||||++|||++|+.||........    ...+........+   ....+.++.+|+.+|+..++.
T Consensus       178 ~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~----~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~  253 (332)
T cd05623         178 MEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET----YGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREH  253 (332)
T ss_pred             cccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHH----HHHHhCCCccccCCCccccCCHHHHHHHHHHccChhh
Confidence                34578899999999999999999999876432111    1111111111111   234578899999999866554


Q ss_pred             C--CCCHHHHHHHH
Q 019475          148 E--RPNAKSLVISL  159 (340)
Q Consensus       148 ~--Rps~~e~l~~l  159 (340)
                      +  |+++.++++|-
T Consensus       254 r~~r~~~~~~~~h~  267 (332)
T cd05623         254 RLGQNGIEDFKQHP  267 (332)
T ss_pred             hcCCCCHHHHhCCC
Confidence            4  68999999883

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.94  E-value=1.5e-26  Score=202.45  Aligned_cols=157  Identities=20%  Similarity=0.298  Sum_probs=120.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ ++|+||+|+||+++.++.++|+|||.+.......    ...++..|++||.+.+.
T Consensus        95 ~~~~~~~~~~~~i~~~l~~LH~~~-i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~  173 (283)
T cd05118          95 LPESLIKSYLYQLLQGLAFCHSHG-ILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGD  173 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcC
Confidence            467889999999999999999999 9999999999999999999999999987665432    34567889999998876


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh-------c----------ccc-------CCCCchhH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD-------S----------ALE-------GHFSNDEG  131 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~-------~----------~~~-------~~~~~~~~  131 (340)
                       .++.++|+||||+++|+|++|+.||+.......-.........       .          ...       ....+..+
T Consensus       174 ~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (283)
T cd05118         174 KGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNAS  253 (283)
T ss_pred             CCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhC
Confidence             6889999999999999999999888654221110000000000       0          000       00112356


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ..+.++|.+||..||.+||++.+++.+
T Consensus       254 ~~~~~~i~~~l~~~P~~Rp~~~~ll~~  280 (283)
T cd05118         254 PQALDLLSQMLHYDPHKRITAEQALAH  280 (283)
T ss_pred             HHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            789999999999999999999999876

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.94  E-value=1e-26  Score=198.41  Aligned_cols=147  Identities=22%  Similarity=0.277  Sum_probs=116.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.....++.|++.||.|||+++ ++||||||+||+++.++.++++|||.+...... ....++..|++||.+.+..++
T Consensus        82 l~~~~~~~~~~ql~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  160 (237)
T cd05576          82 IPEECVKRWAAEMVVALDALHREG-IVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEET  160 (237)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCcccCCCCCC
Confidence            467888999999999999999999 999999999999999999999999987655433 233456779999999888899


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH-----HH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA-----KS  154 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~-----~e  154 (340)
                      .++|+||+|+++|+|++|..|+......          .........+...++.+.++|.+||+.||++||++     ++
T Consensus       161 ~~~DvwslG~il~el~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~  230 (237)
T cd05576         161 EACDWWSLGAILFELLTGKTLVECHPSG----------INTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVED  230 (237)
T ss_pred             chhhHHHHHHHHHHHHHCcchhhcCchh----------cccccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHH
Confidence            9999999999999999999765332110          00011112344566789999999999999999986     55


Q ss_pred             HHHH
Q 019475          155 LVIS  158 (340)
Q Consensus       155 ~l~~  158 (340)
                      ++.|
T Consensus       231 ~~~h  234 (237)
T cd05576         231 IKSH  234 (237)
T ss_pred             HHcC
Confidence            5544

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=1.8e-26  Score=202.23  Aligned_cols=159  Identities=19%  Similarity=0.317  Sum_probs=122.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..++.+++.||.|||+ ++ ++|+||+|+||+++.++.++|+|||++......  ....++..|+|||++.+..
T Consensus       100 ~~~~~~~~~~~~i~~~l~~LH~~~~-i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~~  178 (284)
T cd06620         100 IPVEILGKIAVAVVEGLTYLYNVHR-IMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGK  178 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcC-eeccCCCHHHEEECCCCcEEEccCCcccchhhhccCccccCcccCCHHHHccCC
Confidence            4677889999999999999997 46 999999999999999999999999998654322  3346789999999998888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHH---hhhh----hhhHhhhccccCCCCc-hhHHHHHHHHHHhcccCCCCC
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDL---IRSK----NFLLLMDSALEGHFSN-DEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~li~~cl~~~p~~R  149 (340)
                      ++.++|||||||++|++++|..||.......   ....    ......... ....+. ..+..+.+|+.+||..||.+|
T Consensus       179 ~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~dp~~R  257 (284)
T cd06620         179 YTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP-PPRLPSSDFPEDLRDFVDACLLKDPTER  257 (284)
T ss_pred             CCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc-CCCCCchhcCHHHHHHHHHHhcCCcccC
Confidence            9999999999999999999999886532210   0000    111111111 111122 256789999999999999999


Q ss_pred             CCHHHHHHHHHh
Q 019475          150 PNAKSLVISLMS  161 (340)
Q Consensus       150 ps~~e~l~~l~~  161 (340)
                      ||+.|++++..-
T Consensus       258 pt~~e~~~~~~~  269 (284)
T cd06620         258 PTPQQLCAMPPF  269 (284)
T ss_pred             cCHHHHhcCccc
Confidence            999999987543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.94  E-value=2e-26  Score=199.52  Aligned_cols=156  Identities=20%  Similarity=0.282  Sum_probs=124.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..++.||+.||.|||+++ ++|+||+|+||+++.++.++|+|||.+......   ....++..|++||.+.+..
T Consensus        90 l~~~~~~~~~~~i~~~l~~lH~~~-~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~  168 (262)
T cd05572          90 FDEYTARFYIACVVLAFEYLHNRG-IIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKG  168 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-cccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccccCCcCccChhHhcCCC
Confidence            467788899999999999999999 999999999999999999999999998866543   2345788999999998888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----H
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----A  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~  152 (340)
                      ++.++|+||||+++|+|++|..||.....+.  ................+...+.++.++|.+||..+|++||+     +
T Consensus       169 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~  246 (262)
T cd05572         169 YDFSVDYWSLGILLYELLTGRPPFGEDDEDP--MEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGI  246 (262)
T ss_pred             CCChhhhhhhHHHHHHHHhCCCCcCCCCCCH--HHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCH
Confidence            9999999999999999999998886543111  11111222112223344555788999999999999999999     8


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      .|+++|-
T Consensus       247 ~~l~~~~  253 (262)
T cd05572         247 KDIKKHK  253 (262)
T ss_pred             HHHhcCh
Confidence            8888764

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.94  E-value=1.9e-26  Score=202.87  Aligned_cols=157  Identities=17%  Similarity=0.276  Sum_probs=115.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++.....++.||+.||.|||+++ ++|+||||+||+++.++.+||+|||+++.....    ....++..|+|||++.+ 
T Consensus       100 ~~~~~~~~~~~ql~~al~~lH~~~-i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  178 (291)
T cd07844         100 LSMHNVRLFLFQLLRGLAYCHQRR-VLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGS  178 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecccCCHHHEEEcCCCCEEECccccccccCCCCccccccccccccCCcHHhhcC
Confidence            367788999999999999999999 999999999999999999999999998754321    22345788999999875 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc------------------cccC-------CCCchh
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS------------------ALEG-------HFSNDE  130 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~-------~~~~~~  130 (340)
                      ..++.++||||+|+++|+|++|..||...................                  ....       ......
T Consensus       179 ~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (291)
T cd07844         179 TEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRL  258 (291)
T ss_pred             cccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCC
Confidence            457889999999999999999998885432110000000000000                  0000       000112


Q ss_pred             H--HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          131 G--TELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       131 ~--~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .  ..+.+++.+||..+|.+|||+.+++++
T Consensus       259 ~~~~~~~~li~~~L~~~p~~Rps~~e~l~~  288 (291)
T cd07844         259 DRIPHGEELALKFLQYEPKKRISAAEAMKH  288 (291)
T ss_pred             CCchhHHHHHHHHhccCcccccCHHHHhcC
Confidence            2  678899999999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.94  E-value=3.2e-26  Score=198.34  Aligned_cols=153  Identities=21%  Similarity=0.368  Sum_probs=119.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC--------CcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK--------SYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~   72 (340)
                      +++..+..++.+++.||.|||+.+ ++|+||+|+||+++.++.+||+|||++.......        ...++..|++||+
T Consensus        96 ~~~~~~~~i~~~i~~~l~~lh~~~-i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~  174 (264)
T cd06626          96 LDEHVIRVYTLQLLEGLAYLHSHG-IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEV  174 (264)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhh
Confidence            357788899999999999999999 9999999999999999999999999987654321        2346789999999


Q ss_pred             cccCC---CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCch--hHHHHHHHHHHhcccCCC
Q 019475           73 MRTGR---VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSND--EGTELVRLASRCLQSEAR  147 (340)
Q Consensus        73 ~~~~~---~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~cl~~~p~  147 (340)
                      +.+..   .+.++||||||+++|++++|+.||.........   ... .........+..  .+..+.+++.+||+.+|.
T Consensus       175 ~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  250 (264)
T cd06626         175 ITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQI---MFH-VGAGHKPPIPDSLQLSPEGKDFLDRCLESDPK  250 (264)
T ss_pred             ccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHH---HHH-HhcCCCCCCCcccccCHHHHHHHHHHccCCcc
Confidence            98766   788999999999999999999888543211110   001 111111222332  367889999999999999


Q ss_pred             CCCCHHHHHHH
Q 019475          148 ERPNAKSLVIS  158 (340)
Q Consensus       148 ~Rps~~e~l~~  158 (340)
                      +|||+.+++.+
T Consensus       251 ~R~~~~~i~~~  261 (264)
T cd06626         251 KRPTASELLQH  261 (264)
T ss_pred             cCCCHHHHhcC
Confidence            99999999865

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.94  E-value=1.6e-26  Score=202.89  Aligned_cols=156  Identities=19%  Similarity=0.320  Sum_probs=120.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+...++.||+.||.|||+++ ++|+||+|+||+++.++.+||+|||.+.......     ...++..|+|||++.+
T Consensus        97 ~~~~~~~~~~~~i~~~l~~LH~~~-i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~  175 (288)
T cd07833          97 LPPDAVRSYIWQLLQAIAYCHSHN-IIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVG  175 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcC
Confidence            457788999999999999999999 9999999999999999999999999987654432     3456788999999988


Q ss_pred             C-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh-------------hcc--------------ccCCCC
Q 019475           76 G-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM-------------DSA--------------LEGHFS  127 (340)
Q Consensus        76 ~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~-------------~~~--------------~~~~~~  127 (340)
                      . .++.++||||||+++|+|++|.+||......... .......             +..              ....++
T Consensus       176 ~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (288)
T cd07833         176 DTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQL-YLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYP  254 (288)
T ss_pred             CCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH-HHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcC
Confidence            8 7889999999999999999999887653211100 0000000             000              000122


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ...+.++.+||.+||..+|++|||+++++++
T Consensus       255 ~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  285 (288)
T cd07833         255 GKVSSPALDFLKACLRMDPKERLTCDELLQH  285 (288)
T ss_pred             CccchHHHHHHHHHhccCchhcccHHHHhcC
Confidence            2346789999999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.94  E-value=2.7e-26  Score=201.91  Aligned_cols=156  Identities=17%  Similarity=0.199  Sum_probs=115.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC-
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG-   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~-   76 (340)
                      ++.++..++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||+++.....    ....++..|+|||.+.+. 
T Consensus       101 ~~~~~~~~~~qi~~~L~~lH~~~-i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  179 (291)
T cd07870         101 HPYNVRLFMFQLLRGLAYIHGQH-ILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGAT  179 (291)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-cccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCceeecCC
Confidence            56778889999999999999999 999999999999999999999999998754322    233568899999998754 


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH------------------hhhccccCCCC---------ch
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL------------------LMDSALEGHFS---------ND  129 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~---------~~  129 (340)
                      .++.++|||||||++|+|++|..||...............                  ..........+         ..
T Consensus       180 ~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (291)
T cd07870         180 DYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLS  259 (291)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccC
Confidence            4788999999999999999999887543211000000000                  00000000000         01


Q ss_pred             hHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          130 EGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       130 ~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+..+.+++.+|+..||.+|||+.+++.|
T Consensus       260 ~~~~~~~ll~~~l~~dp~~R~t~~~~l~h  288 (291)
T cd07870         260 RPPKAEDLASQMLMMFPKDRISAQDALLH  288 (291)
T ss_pred             CChHHHHHHHHHhCcCcccCcCHHHHhcC
Confidence            24678899999999999999999999865

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.94  E-value=2.6e-26  Score=199.54  Aligned_cols=153  Identities=15%  Similarity=0.270  Sum_probs=118.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-CCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++..+..++.||+.||.|||+++ ++||||||+||+++. ++.++|+|||.+......    ....++..|+|||++.+.
T Consensus       106 ~~~~~~~~~~qi~~al~~lH~~~-i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  184 (268)
T cd06624         106 NEQTIIFYTKQILEGLKYLHDNQ-IVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKG  184 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCC-EeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccc
Confidence            45677889999999999999999 999999999999976 679999999998754322    223578899999998764


Q ss_pred             C--CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           77 R--VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        77 ~--~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      .  ++.++|+||||+++|+|++|..||.........   .............+...++++.+++.+||..+|.+|||+.+
T Consensus       185 ~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~  261 (268)
T cd06624         185 PRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAA---MFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHD  261 (268)
T ss_pred             cccCCchhhhHHHHHHHHHHHhCCCCCccccChhhh---HhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHH
Confidence            4  788999999999999999999887542111110   01111111222345566788999999999999999999999


Q ss_pred             HHHH
Q 019475          155 LVIS  158 (340)
Q Consensus       155 ~l~~  158 (340)
                      ++.|
T Consensus       262 ll~~  265 (268)
T cd06624         262 LLQD  265 (268)
T ss_pred             HHhC
Confidence            9876

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.94  E-value=2.4e-26  Score=204.02  Aligned_cols=159  Identities=18%  Similarity=0.198  Sum_probs=120.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++.++..++.||+.||.|||+.+ ++||||||+||+++.++.+||+|||.+......    ....++..|+|||.+.+ 
T Consensus       105 l~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  183 (309)
T cd07845         105 FSESQVKCLMLQLLRGLQYLHENF-IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGC  183 (309)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEECCCCCEEECccceeeecCCccCCCCcccccccccChhhhcCC
Confidence            478889999999999999999999 999999999999999999999999998865532    12234678999999875 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc----------------c--ccCC-------CCchh
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS----------------A--LEGH-------FSNDE  130 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~----------------~--~~~~-------~~~~~  130 (340)
                      ..++.++|||||||++|+|++|++||.......... .+......                .  ....       .....
T Consensus       184 ~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (309)
T cd07845         184 TTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLD-LIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWL  262 (309)
T ss_pred             CCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH-HHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhcccc
Confidence            457899999999999999999998886542211100 00000000                0  0000       00123


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475          131 GTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus       131 ~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                      ++.+.++|.+||..||++|||+.+++.|.+-
T Consensus       263 ~~~~~~li~~ml~~dp~~R~t~~~il~h~~f  293 (309)
T cd07845         263 SEAGLRLLNFLLMYDPKKRATAEEALESSYF  293 (309)
T ss_pred             CHHHHHHHHHHhcCChhhCcCHHHHhcChhh
Confidence            5778999999999999999999999987543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.94  E-value=1.8e-26  Score=207.18  Aligned_cols=157  Identities=17%  Similarity=0.255  Sum_probs=120.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....    ....++..|+|||.+.+ 
T Consensus       105 l~~~~~~~i~~qi~~aL~~LH~~~-i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  183 (337)
T cd07858         105 LSDDHCQYFLYQLLRGLKYIHSAN-VLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNC  183 (337)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EecCCCCHHHEEEcCCCCEEECcCccccccCCCcccccccccccCccChHHHhcC
Confidence            467788999999999999999999 999999999999999999999999998865433    23457889999998865 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh-------------------hhhhhhHhhhccc---c---CCCCchh
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI-------------------RSKNFLLLMDSAL---E---GHFSNDE  130 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~-------------------~~~~~~~~~~~~~---~---~~~~~~~  130 (340)
                      ..++.++|||||||++|+|++|+.||........                   .............   .   ....+..
T Consensus       184 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (337)
T cd07858         184 SEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHA  263 (337)
T ss_pred             CCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccC
Confidence            4688999999999999999999988865321100                   0000000000000   0   0112345


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          131 GTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       131 ~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +..+.++|.+||+.+|++|||+.++++|
T Consensus       264 ~~~~~~li~~~l~~~P~~Rps~~ell~h  291 (337)
T cd07858         264 NPLAIDLLEKMLVFDPSKRITVEEALAH  291 (337)
T ss_pred             CHHHHHHHHHHhcCChhhccCHHHHHcC
Confidence            6789999999999999999999999988

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.94  E-value=2.6e-26  Score=198.85  Aligned_cols=155  Identities=17%  Similarity=0.307  Sum_probs=123.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~   75 (340)
                      ++...++.++.|+++||.|||+ .+ ++|+||+|+||+++.++.++|+|||.+.......    ...++..|+|||.+.+
T Consensus        96 l~~~~~~~~~~~l~~~l~~lh~~~~-~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~  174 (264)
T cd06623          96 IPEPVLAYIARQILKGLDYLHTKRH-IIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQG  174 (264)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhccCC-CccCCCCHHHEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCC
Confidence            4677889999999999999999 98 9999999999999999999999999988655432    3356789999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCch-hHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSND-EGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|+||||+++|+|++|..|+........ ......+. .......+.. .+..+.++|.+||..+|++|||+.+
T Consensus       175 ~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~  252 (264)
T cd06623         175 ESYSYAADIWSLGLTLLECALGKFPFLPPGQPSF-FELMQAIC-DGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAE  252 (264)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCccccccCH-HHHHHHHh-cCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHH
Confidence            8899999999999999999999988755421000 01111111 1122223334 6788999999999999999999999


Q ss_pred             HHHH
Q 019475          155 LVIS  158 (340)
Q Consensus       155 ~l~~  158 (340)
                      ++++
T Consensus       253 ll~~  256 (264)
T cd06623         253 LLQH  256 (264)
T ss_pred             HHhC
Confidence            9986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.94  E-value=2e-26  Score=201.77  Aligned_cols=157  Identities=18%  Similarity=0.243  Sum_probs=118.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..++.++.|++.||.|||+++ ++||||+|+||+++.++.++|+|||.+......    ....++..|+|||++.+.
T Consensus        96 ~~~~~~~~~~~~i~~~L~~lH~~~-~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  174 (283)
T cd07835          96 LDPPLIKSYLYQLLQGIAYCHSHR-VLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGS  174 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCceeecC
Confidence            468889999999999999999999 999999999999999999999999998754322    223457889999988764


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh--------------------Hhhhcc---ccCCCCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL--------------------LLMDSA---LEGHFSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~--------------------~~~~~~---~~~~~~~~~~~  132 (340)
                       .++.++||||||+++|+|++|..||..............                    ......   .........+.
T Consensus       175 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T cd07835         175 RQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDE  254 (283)
T ss_pred             cccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCH
Confidence             468899999999999999999988765321110000000                    000000   00011234457


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+.++|.+||+.+|.+|||+.+++.+
T Consensus       255 ~~~~li~~~l~~~P~~Rpt~~~il~~  280 (283)
T cd07835         255 DGLDLLSKMLVYDPAKRISAKAALQH  280 (283)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            89999999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=3e-26  Score=200.07  Aligned_cols=154  Identities=19%  Similarity=0.299  Sum_probs=121.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++...+.++.|++.||.|||+.+ ++|+||+|+||+++.++.++|+|||.+......    ....++..|+|||.+.++
T Consensus        98 l~~~~~~~i~~~i~~~l~~lh~~~-i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  176 (277)
T cd06917          98 IAEKYISVIIREVLVALKYIHKVG-VIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEG  176 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccC
Confidence            467889999999999999999999 999999999999999999999999998765433    234678889999988754


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCc-hhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSN-DEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                       .++.++|+|||||++|+|++|..||........     ............+. ..+.++.+++.+||..+|.+||++.+
T Consensus       177 ~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~  251 (277)
T cd06917         177 KYYDTKADIWSLGITIYEMATGNPPYSDVDAFRA-----MMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERLSAEE  251 (277)
T ss_pred             CccccchhHHHHHHHHHHHHhCCCCCCCCChhhh-----hhccccCCCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHH
Confidence             468899999999999999999988754321111     11111111111222 25678999999999999999999999


Q ss_pred             HHHHHH
Q 019475          155 LVISLM  160 (340)
Q Consensus       155 ~l~~l~  160 (340)
                      ++.+-+
T Consensus       252 il~~~~  257 (277)
T cd06917         252 LLKSKW  257 (277)
T ss_pred             HhhChH
Confidence            988643

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.94  E-value=2.2e-26  Score=206.43  Aligned_cols=160  Identities=17%  Similarity=0.246  Sum_probs=121.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~   72 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......        ....++..|++||.
T Consensus       104 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~  182 (334)
T cd07855         104 LTEEHIRYFLYQLLRGLKYIHSAN-VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPEL  182 (334)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHH
Confidence            467889999999999999999999 999999999999999999999999998754322        12357889999999


Q ss_pred             ccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh-------------------hhhhhhHhhhccc-cCC-----C
Q 019475           73 MRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI-------------------RSKNFLLLMDSAL-EGH-----F  126 (340)
Q Consensus        73 ~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~-------------------~~~~~~~~~~~~~-~~~-----~  126 (340)
                      +.+ ..++.++|||||||++|+|++|+.||........                   ............. ...     .
T Consensus       183 ~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (334)
T cd07855         183 LLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKI  262 (334)
T ss_pred             hcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHH
Confidence            865 4578999999999999999999998865421100                   0000011111000 000     1


Q ss_pred             CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475          127 SNDEGTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus       127 ~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                      ....+.++.++|.+||+.+|.+|||+.+++.|.+-
T Consensus       263 ~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~  297 (334)
T cd07855         263 FPKASPEALDLLSQMLQFDPEERITVEQALQHPFL  297 (334)
T ss_pred             cccCCHHHHHHHHHHccCChhhCcCHHHHHhChhh
Confidence            12346789999999999999999999999987543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.94  E-value=2.6e-26  Score=199.41  Aligned_cols=156  Identities=18%  Similarity=0.289  Sum_probs=122.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCC--------CCcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDG--------KSYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE   71 (340)
                      +++..++.++.||+.||.|||+++ ++|+||+|+||+++.++ .++|+|||.+......        ....++..|+|||
T Consensus       100 ~~~~~~~~~~~ql~~al~~LH~~~-i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE  178 (268)
T cd06630         100 FKEAVIINYTEQLLRGLSYLHENQ-IIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPE  178 (268)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHh
Confidence            467788999999999999999999 99999999999998776 5899999998765432        1235678999999


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           72 YMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        72 ~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+.+..++.++|+||+|+++|+|++|..||......... ....+..........+...++++.+++.+||..+|.+|||
T Consensus       179 ~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~  257 (268)
T cd06630         179 VLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHL-ALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPP  257 (268)
T ss_pred             HhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchH-HHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcC
Confidence            998888999999999999999999999887543211100 1111111112223445566788999999999999999999


Q ss_pred             HHHHHHH
Q 019475          152 AKSLVIS  158 (340)
Q Consensus       152 ~~e~l~~  158 (340)
                      +.++++|
T Consensus       258 ~~~ll~~  264 (268)
T cd06630         258 SRELLKH  264 (268)
T ss_pred             HHHHhcC
Confidence            9999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=4e-26  Score=200.38  Aligned_cols=159  Identities=17%  Similarity=0.287  Sum_probs=121.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~   78 (340)
                      ++......++.||+.||.|||+.+ ++|+||+|+||+++.++.++|+|||++......  ....++..|++||.+.+..+
T Consensus       102 l~~~~~~~i~~~i~~~L~~lH~~~-i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~  180 (287)
T cd06621         102 IGEKVLGKIAESVLKGLSYLHSRK-IIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPY  180 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEEecCCeEEEeeccccccccccccccccCCccccCHHHhcCCCC
Confidence            355677899999999999999999 999999999999999999999999998754432  23456788999999998889


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc----cccCCCC--chhHHHHHHHHHHhcccCCCCCCCH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS----ALEGHFS--NDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +.++|||||||++|+|++|..||................+..    .......  ...++.+.+++.+||..+|++|||+
T Consensus       181 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~  260 (287)
T cd06621         181 SITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTP  260 (287)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCH
Confidence            999999999999999999998876541100000111111111    1111111  2346789999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          153 KSLVISLM  160 (340)
Q Consensus       153 ~e~l~~l~  160 (340)
                      .|++++-+
T Consensus       261 ~eil~~~~  268 (287)
T cd06621         261 WDMLEHPW  268 (287)
T ss_pred             HHHHhCcc
Confidence            99998743

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.94  E-value=3.4e-26  Score=201.16  Aligned_cols=152  Identities=17%  Similarity=0.229  Sum_probs=123.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      |+...+..++.||+.||.|||+++ ++|+||+|+||+++.++.+||+|||++...... ....+++.|++||.+.+...+
T Consensus        98 l~~~~~~~~~~qil~~l~~lH~~~-i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  176 (290)
T cd05580          98 FPEPVARFYAAQVVLALEYLHSLD-IVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYG  176 (290)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCCCccccChhhhcCCCCC
Confidence            467788899999999999999999 999999999999999999999999998866544 234578899999999888889


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NAKS  154 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~~e  154 (340)
                      .++||||||+++|+|++|..||.......    ........  ....+...+..+.+++.+||..+|.+|+     ++.+
T Consensus       177 ~~~Di~slG~il~~l~~g~~p~~~~~~~~----~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~  250 (290)
T cd05580         177 KAVDWWALGILIYEMLAGYPPFFDDNPIQ----IYEKILEG--KVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVND  250 (290)
T ss_pred             ccccHHHHHHHHHHHHhCCCCCCCCCHHH----HHHHHhcC--CccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHH
Confidence            99999999999999999998876543211    11111111  1234445578899999999999999998     8888


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      ++.|.
T Consensus       251 l~~~~  255 (290)
T cd05580         251 IKNHP  255 (290)
T ss_pred             HHcCc
Confidence            88763

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.94  E-value=2.3e-26  Score=206.12  Aligned_cols=158  Identities=17%  Similarity=0.203  Sum_probs=118.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~   72 (340)
                      +++.++..++.||+.||.|||++| ++||||||+||+++.++.++|+|||+++.....        ....++..|+|||.
T Consensus       102 ~~~~~~~~~~~qi~~aL~~LH~~g-ivH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~  180 (332)
T cd07857         102 LTDAHFQSFIYQILCGLKYIHSAN-VLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEI  180 (332)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHH
Confidence            467888999999999999999999 999999999999999999999999998754422        22367889999998


Q ss_pred             ccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh-----------hhhhH--------hhh---cccc---CCC
Q 019475           73 MRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS-----------KNFLL--------LMD---SALE---GHF  126 (340)
Q Consensus        73 ~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~-----------~~~~~--------~~~---~~~~---~~~  126 (340)
                      +.+ ..++.++|||||||++|++++|.+||........-.           .....        ...   ....   ...
T Consensus       181 ~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (332)
T cd07857         181 MLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESI  260 (332)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhh
Confidence            765 468899999999999999999998875432110000           00000        000   0000   001


Q ss_pred             CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          127 SNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       127 ~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ....+..+.+++.+||+.+|.+|||+.+++.+-
T Consensus       261 ~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~  293 (332)
T cd07857         261 FPNANPLALDLLEKLLAFDPTKRISVEEALEHP  293 (332)
T ss_pred             CCCCCHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence            122456799999999999999999999998774

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.94  E-value=4e-26  Score=199.35  Aligned_cols=153  Identities=18%  Similarity=0.325  Sum_probs=123.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.|++.|+.+||+++ ++|+||+|+||+++.++.++|+|||++......    ....++..|++||.+.+.
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~-i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  176 (277)
T cd06641          98 LDETQIATILREILKGLDYLHSEK-KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQS  176 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHccCC-eecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhccC
Confidence            467889999999999999999999 999999999999999999999999998755432    234567889999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+|||||++|+|++|..|+......     .....+........+...+.++.+++.+||..+|.+||++.+++
T Consensus       177 ~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l  251 (277)
T cd06641         177 AYDSKADIWSLGITAIELAKGEPPHSELHPM-----KVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELL  251 (277)
T ss_pred             CCCchhhHHHHHHHHHHHHcCCCCCCccchH-----HHHHHHhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHH
Confidence            8899999999999999999999887543211     11111111222233445678899999999999999999999999


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      +|-
T Consensus       252 ~~~  254 (277)
T cd06641         252 KHK  254 (277)
T ss_pred             hCH
Confidence            973

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.94  E-value=3.5e-26  Score=197.10  Aligned_cols=154  Identities=20%  Similarity=0.318  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.|++.||.|||+.+ ++|+||+|+||+++.++.++|+|||.+.......      ...++..|++||.+.
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~-~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~  176 (260)
T cd06606          98 LPEPVIRKYTRQILEGLAYLHSNG-IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIR  176 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhc
Confidence            478899999999999999999999 9999999999999999999999999988665432      345788999999998


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      +...+.++||||||+++|+|++|..||.......   ...............+...+..+.+++.+||..+|++||++.+
T Consensus       177 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~  253 (260)
T cd06606         177 GEEYGRAADIWSLGCTVIEMATGKPPWSELGNPM---AALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADE  253 (260)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH---HHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHH
Confidence            8889999999999999999999998876543110   1111111112223345566788999999999999999999999


Q ss_pred             HHHH
Q 019475          155 LVIS  158 (340)
Q Consensus       155 ~l~~  158 (340)
                      ++.|
T Consensus       254 ll~~  257 (260)
T cd06606         254 LLQH  257 (260)
T ss_pred             HhhC
Confidence            9876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.94  E-value=4.8e-26  Score=202.44  Aligned_cols=159  Identities=21%  Similarity=0.289  Sum_probs=118.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----------CCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----------KSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~a   69 (340)
                      +++.....++.|++.||.|||+++ |+||||||+||+++.++.++++|||.+......           ....++..|+|
T Consensus        98 ~~~~~~~~~~~~l~~~L~~LH~~~-ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a  176 (314)
T cd08216          98 LPELAIAFILKDVLNALDYIHSKG-FIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLS  176 (314)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccC
Confidence            356678889999999999999999 999999999999999999999999987644321           22345678999


Q ss_pred             ccccccC--CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh----Hhhh------------------------
Q 019475           70 PEYMRTG--RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL----LLMD------------------------  119 (340)
Q Consensus        70 PE~~~~~--~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~----~~~~------------------------  119 (340)
                      ||++.+.  .++.++|+|||||++|+|++|..||..............    ..+.                        
T Consensus       177 PE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (314)
T cd08216         177 PEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNR  256 (314)
T ss_pred             HHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchh
Confidence            9998753  578899999999999999999998865321111000000    0000                        


Q ss_pred             ccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          120 SALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       120 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ...........+.++.+|+.+||..+|++|||+.++++|..
T Consensus       257 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p~  297 (314)
T cd08216         257 DSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSF  297 (314)
T ss_pred             hhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCch
Confidence            00000112234567899999999999999999999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.94  E-value=2.7e-26  Score=202.51  Aligned_cols=157  Identities=20%  Similarity=0.181  Sum_probs=117.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++..++.++.||++||.|||+++ ++|+||+|+||+++.++.++|+|||+++.....    ....+++.|+|||.+.+ 
T Consensus        99 ~~~~~~~~~~~qi~~al~~lH~~~-i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  177 (298)
T cd07841          99 LTPADIKSYMLMTLRGLEYLHSNW-ILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGA  177 (298)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeecCCChhhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCC
Confidence            578889999999999999999999 999999999999999999999999998865443    22345678999998865 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh--------------hc---cccC-----CCCchhHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM--------------DS---ALEG-----HFSNDEGTE  133 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~--------------~~---~~~~-----~~~~~~~~~  133 (340)
                      ..++.++|||||||++|+|++|.++|.................              ..   ....     ......+..
T Consensus       178 ~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (298)
T cd07841         178 RHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDD  257 (298)
T ss_pred             CCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHH
Confidence            4578899999999999999999766654321100000000000              00   0000     011234678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.++|.+||..+|++|||+.+++.|
T Consensus       258 ~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         258 ALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             HHHHHHHHhcCCcccCcCHHHHhhC
Confidence            9999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.93  E-value=3.7e-26  Score=202.42  Aligned_cols=154  Identities=19%  Similarity=0.168  Sum_probs=117.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------------------CCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------------------KSY   61 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------------------~~~   61 (340)
                      +++..+..++.|++.||.|||+++ ++||||||+||+++.++.++|+|||+++.....                   ...
T Consensus        98 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (305)
T cd05609          98 LPVDMARMYFAETVLALEYLHNYG-IVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQV  176 (305)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCC
Confidence            467788899999999999999999 999999999999999999999999987632100                   113


Q ss_pred             ccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc-CCCCchhHHHHHHHHHH
Q 019475           62 STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE-GHFSNDEGTELVRLASR  140 (340)
Q Consensus        62 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~  140 (340)
                      .++..|+|||.+.+..++.++|+|||||++|+|++|..||.+.......    ......... .......+.++.++|.+
T Consensus       177 ~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~  252 (305)
T cd05609         177 CGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELF----GQVISDDIEWPEGDEALPADAQDLISR  252 (305)
T ss_pred             ccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH----HHHHhcccCCCCccccCCHHHHHHHHH
Confidence            4577899999998888999999999999999999999988754322211    111111111 11122456789999999


Q ss_pred             hcccCCCCCCCHHHHHHHH
Q 019475          141 CLQSEARERPNAKSLVISL  159 (340)
Q Consensus       141 cl~~~p~~Rps~~e~l~~l  159 (340)
                      ||+.+|++||+..++.+.|
T Consensus       253 ~l~~~P~~R~~~~~~~~ll  271 (305)
T cd05609         253 LLRQNPLERLGTGGAFEVK  271 (305)
T ss_pred             HhccChhhccCccCHHHHH
Confidence            9999999999854444433

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.93  E-value=3.3e-26  Score=202.97  Aligned_cols=156  Identities=21%  Similarity=0.246  Sum_probs=116.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC--------CcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK--------SYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~   72 (340)
                      +++.+.+.++.||+.||.|||+++ ++|+||||+||+++.++.+||+|||++.......        ...++..|+|||.
T Consensus       116 ~~~~~~~~i~~qi~~al~~lH~~~-i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  194 (310)
T cd07865         116 FTLSEIKKVMKMLLNGLYYIHRNK-ILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPEL  194 (310)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHH
Confidence            467889999999999999999999 9999999999999999999999999987553221        2345778999998


Q ss_pred             cccCC-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc---c---------------ccCC--------
Q 019475           73 MRTGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS---A---------------LEGH--------  125 (340)
Q Consensus        73 ~~~~~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~--------  125 (340)
                      +.+.. ++.++||||||+++|+|++|.+||........ ...+..+...   .               ....        
T Consensus       195 ~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (310)
T cd07865         195 LLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQ-LTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKER  273 (310)
T ss_pred             hcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHh
Confidence            87643 68899999999999999999988755422110 0000010000   0               0000        


Q ss_pred             -CCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          126 -FSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       126 -~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                       .+...+..+.+||.+||..+|.+|||++++++|
T Consensus       274 l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h  307 (310)
T cd07865         274 LKPYVKDPHALDLIDKLLVLDPAKRIDADTALNH  307 (310)
T ss_pred             cccccCCHHHHHHHHHHhcCChhhccCHHHHhcC
Confidence             000123567899999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.93  E-value=2.6e-26  Score=200.54  Aligned_cols=156  Identities=18%  Similarity=0.243  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.|++.||.|||+++ ++||||+|+||+++.++.++|+|||.+......   ....++..|++||++.+..
T Consensus        92 ~~~~~~~~~~~ql~~~l~~lH~~~-i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  170 (277)
T cd05577          92 FPEARAIFYAAQIICGLEHLHQRR-IVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEV  170 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCC
Confidence            467788999999999999999999 999999999999999999999999998765432   2345678899999998888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NA  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~  152 (340)
                      ++.++|||||||++|+|++|+.||........ ...+..... ......+...++.+.++|.+||+.+|.+||     ++
T Consensus       171 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  248 (277)
T cd05577         171 YDFSVDWFALGCTLYEMIAGRSPFRQRKEKVE-KEELKRRTL-EMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSA  248 (277)
T ss_pred             CCchhhhHHHHHHHHHHhhCCCCCCCCccccc-HHHHHhccc-cccccCCccCCHHHHHHHHHHccCChhHccCCCcccH
Confidence            99999999999999999999988755322100 011111111 112233445678899999999999999999     77


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      .+++.|.
T Consensus       249 ~~ll~h~  255 (277)
T cd05577         249 DEVREHP  255 (277)
T ss_pred             HHHHhCh
Confidence            7787753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.93  E-value=3.7e-26  Score=205.25  Aligned_cols=157  Identities=21%  Similarity=0.278  Sum_probs=118.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---------CcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---------SYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---------~~~~~~~y~aPE   71 (340)
                      ++|..+..++.||+.||.|||+++ ++|+||||+||+++.++.+||+|||++.......         ...++..|++||
T Consensus       104 ~~~~~~~~i~~qi~~~L~~LH~~~-i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  182 (337)
T cd07852         104 LEDVHKRYIMYQLLKALKYIHSGN-VIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPE  182 (337)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCce
Confidence            467788899999999999999999 9999999999999999999999999987543321         235688899999


Q ss_pred             cccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhh-------------------hhhHhhhcccc------CC
Q 019475           72 YMRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK-------------------NFLLLMDSALE------GH  125 (340)
Q Consensus        72 ~~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~------~~  125 (340)
                      .+.+ ..++.++||||||+++|+|++|+.||...........                   ....+......      ..
T Consensus       183 ~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (337)
T cd07852         183 ILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDE  262 (337)
T ss_pred             eeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhh
Confidence            8765 4578899999999999999999988865321111000                   00000000000      01


Q ss_pred             CCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          126 FSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       126 ~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ..+..+.++.++|.+||+.+|++|||+.+++++
T Consensus       263 ~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         263 LLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             hccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence            112256789999999999999999999999987

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=4e-26  Score=196.40  Aligned_cols=152  Identities=21%  Similarity=0.317  Sum_probs=123.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC----cccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS----YSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.|++.||.+||++| ++||||+|+||+++.++.++|+|||.+........    ..++..|++||.+.+.
T Consensus        96 l~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~  174 (254)
T cd06627          96 FPESLVAVYVYQVLQGLAYLHEQG-VIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMS  174 (254)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-cccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCC
Confidence            478889999999999999999999 99999999999999999999999999887654432    4568889999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|||+||+++|+|++|..|+......    ....... .......+...+..+.+++.+||..+|++|||+.+++
T Consensus       175 ~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l  249 (254)
T cd06627         175 GASTASDIWSLGCTVIELLTGNPPYYDLNPM----AALFRIV-QDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLL  249 (254)
T ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCccHH----HHHHHHh-ccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHh
Confidence            8899999999999999999999887543211    1111111 1122234556678899999999999999999999998


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      .+
T Consensus       250 ~~  251 (254)
T cd06627         250 KH  251 (254)
T ss_pred             cC
Confidence            64

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.93  E-value=3.8e-26  Score=197.03  Aligned_cols=152  Identities=19%  Similarity=0.296  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC-eEEecccCcccCCCCC----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN-PRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~-~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~   75 (340)
                      +++..++.++.|++.||.|||+.+ ++|+||||+||+++.++. ++|+|||.+.......    ...+++.|+|||++.+
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~-i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~  176 (257)
T cd08225          98 FSEDQILSWFVQISLGLKHIHDRK-ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQN  176 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcC
Confidence            467889999999999999999999 999999999999998864 6999999987654432    2357888999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ..++.++|+||||+++|++++|..||........    ........ ....+...+.++.+++.+||..+|++|||+.++
T Consensus       177 ~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l  251 (257)
T cd08225         177 RPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQL----VLKICQGY-FAPISPNFSRDLRSLISQLFKVSPRDRPSITSI  251 (257)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHH----HHHHhccc-CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHH
Confidence            8899999999999999999999988765322111    11122111 122334556789999999999999999999999


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      +.+
T Consensus       252 l~~  254 (257)
T cd08225         252 LKR  254 (257)
T ss_pred             hhC
Confidence            876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.93  E-value=5.3e-26  Score=199.48  Aligned_cols=155  Identities=21%  Similarity=0.329  Sum_probs=122.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..++.++.|++.||.|||+.| ++|+||+|+||+++.++.++|+|||.+......    ....++..|++||.+.+.
T Consensus       113 l~~~~~~~i~~~i~~~L~~lH~~g-i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  191 (286)
T cd06614         113 MNEPQIAYVCREVLQGLEYLHSQN-VIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRK  191 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCC
Confidence            577889999999999999999999 999999999999999999999999987654432    233567889999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc-CCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE-GHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|+||||+++|+|++|..|+........    .......... ...+...+..+.++|.+||+.+|.+|||+.++
T Consensus       192 ~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i  267 (286)
T cd06614         192 DYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRA----LFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEEL  267 (286)
T ss_pred             CCCCccccHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHH
Confidence            899999999999999999999988754321111    1111111111 11122356789999999999999999999999


Q ss_pred             HHHHH
Q 019475          156 VISLM  160 (340)
Q Consensus       156 l~~l~  160 (340)
                      +.+..
T Consensus       268 l~~~~  272 (286)
T cd06614         268 LQHPF  272 (286)
T ss_pred             hhChH
Confidence            98643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.93  E-value=3.9e-26  Score=204.34  Aligned_cols=160  Identities=21%  Similarity=0.264  Sum_probs=116.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----------CCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----------KSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~a   69 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+||+++.++.++++||+.+......           ....++..|++
T Consensus        98 ~~~~~~~~~~~qi~~aL~~lH~~~-ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a  176 (328)
T cd08226          98 MSEALIGNILFGALRGLNYLHQNG-YIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLS  176 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccC
Confidence            356677899999999999999999 999999999999999999999999754322111           01123567999


Q ss_pred             ccccccC--CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh--------------------------------
Q 019475           70 PEYMRTG--RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL--------------------------------  115 (340)
Q Consensus        70 PE~~~~~--~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~--------------------------------  115 (340)
                      ||++.+.  .++.++|||||||++|+|++|+.||..............                                
T Consensus       177 PE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (328)
T cd08226         177 PELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGE  256 (328)
T ss_pred             hhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhccccc
Confidence            9999764  478899999999999999999988865321111000000                                


Q ss_pred             ---------HhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475          116 ---------LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus       116 ---------~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                               ...........+...+..+.+|+.+||..||++|||+.++++|.+-
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~  311 (328)
T cd08226         257 SVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFF  311 (328)
T ss_pred             chhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHH
Confidence                     0000001111123456789999999999999999999999987543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.93  E-value=1.7e-26  Score=206.78  Aligned_cols=154  Identities=18%  Similarity=0.234  Sum_probs=118.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++..+..++.|++.||.|||+++ |+||||||+|||++.++.+||+|||++.......     ...||+.|+|||++.+
T Consensus        99 l~~~~~~~~~~qi~~~L~~lH~~~-iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~  177 (331)
T cd05624          99 LPEDMARFYIAEMVLAIHSIHQLH-YVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQA  177 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhc
Confidence            356778889999999999999999 9999999999999999999999999987654322     2468999999999875


Q ss_pred             -----CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCC---chhHHHHHHHHHHhcccCCC
Q 019475           76 -----GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS---NDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        76 -----~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~cl~~~p~  147 (340)
                           +.++.++|||||||++|+|++|+.||........    ...+........++   ...++++.+++.+||..++.
T Consensus       178 ~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~----~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~~  253 (331)
T cd05624         178 MEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET----YGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRER  253 (331)
T ss_pred             cccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHH----HHHHHcCCCcccCCCccccCCHHHHHHHHHHccCchh
Confidence                 4678899999999999999999999865432211    11111111111111   23568899999999986655


Q ss_pred             C--CCCHHHHHHHH
Q 019475          148 E--RPNAKSLVISL  159 (340)
Q Consensus       148 ~--Rps~~e~l~~l  159 (340)
                      +  |+++++++.|.
T Consensus       254 ~~~~~~~~~~~~h~  267 (331)
T cd05624         254 RLGQNGIEDFKKHA  267 (331)
T ss_pred             hcCCCCHHHHhcCC
Confidence            4  46899998774

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=4.2e-26  Score=199.51  Aligned_cols=154  Identities=18%  Similarity=0.260  Sum_probs=119.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~--   74 (340)
                      |++.++..++.|++.||.|||+++ ++|+||||+||+++.++.++|+|||++......    ....++..|++||.+.  
T Consensus       100 l~~~~~~~~~~ql~~~l~~lh~~~-i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  178 (280)
T cd06611         100 LTEPQIRYVCRQMLEALNFLHSHK-VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACE  178 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCChhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhc
Confidence            467788999999999999999999 999999999999999999999999987654322    2345788999999975  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-ccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-LEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                         +..++.++|+|||||++|+|++|..||.......    ....+.... .....+...+.++.+++.+||..+|.+||
T Consensus       179 ~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  254 (280)
T cd06611         179 TFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMR----VLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRP  254 (280)
T ss_pred             ccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHH----HHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCc
Confidence               3446789999999999999999998875532111    111111110 01112345567899999999999999999


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      ++.+++++-
T Consensus       255 s~~~il~~~  263 (280)
T cd06611         255 TAAELLKHP  263 (280)
T ss_pred             CHHHHhcCh
Confidence            999999873

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.93  E-value=4.6e-26  Score=199.69  Aligned_cols=156  Identities=24%  Similarity=0.314  Sum_probs=118.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||+|||+++ ++|+||+|+||+++.++.++|+|||.+.......     ...++..|+|||.+.+
T Consensus        97 ~~~~~~~~i~~~i~~al~~LH~~~-~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  175 (287)
T cd07840          97 FTESQIKCYMKQLLEGLQYLHSNG-ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLG  175 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEc
Confidence            467889999999999999999999 9999999999999999999999999988665432     2345778999998765


Q ss_pred             -CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh--------------------------ccccCCCCc
Q 019475           76 -GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD--------------------------SALEGHFSN  128 (340)
Q Consensus        76 -~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~  128 (340)
                       ..++.++||||||+++|+|++|+.||........... ......                          ..+......
T Consensus       176 ~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (287)
T cd07840         176 ATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEK-IFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKH  254 (287)
T ss_pred             cccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHH-HHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcc
Confidence             4578999999999999999999988765432111110 000000                          000000111


Q ss_pred             hhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          129 DEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       129 ~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .++..+.+++.+||..+|.+||++.+++++
T Consensus       255 ~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  284 (287)
T cd07840         255 LIDPSALDLLDKLLTLDPKKRISADQALQH  284 (287)
T ss_pred             cCCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            126788999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3e-26  Score=219.74  Aligned_cols=148  Identities=22%  Similarity=0.336  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----------------------CCCCc
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----------------------DGKSY   61 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----------------------~~~~~   61 (340)
                      ...++++++|++||.|+|++| +|||||||.||+++.++.|||+|||++....                      ..+..
T Consensus       697 d~~wrLFreIlEGLaYIH~~g-iIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~  775 (1351)
T KOG1035|consen  697 DEAWRLFREILEGLAYIHDQG-IIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQ  775 (1351)
T ss_pred             HHHHHHHHHHHHHHHHHHhCc-eeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccc
Confidence            467899999999999999999 9999999999999999999999999988611                      11245


Q ss_pred             ccCCccCCccccccCC---CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC--CCchhHHHHHH
Q 019475           62 STNLAFTPPEYMRTGR---VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH--FSNDEGTELVR  136 (340)
Q Consensus        62 ~~~~~y~aPE~~~~~~---~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  136 (340)
                      +||.-|+|||++.+..   |+.|+|+||||+|++||+..   |...   +.+...+..+-+..++.+  +.....+.-..
T Consensus       776 VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP---F~Ts---MERa~iL~~LR~g~iP~~~~f~~~~~~~e~s  849 (1351)
T KOG1035|consen  776 VGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP---FGTS---MERASILTNLRKGSIPEPADFFDPEHPEEAS  849 (1351)
T ss_pred             cceeeeecHHHhcccccccccchhhhHHHHHHHHHHhcc---CCch---HHHHHHHHhcccCCCCCCcccccccchHHHH
Confidence            7899999999997654   99999999999999999864   3322   111222222222222222  22333455678


Q ss_pred             HHHHhcccCCCCCCCHHHHHHH
Q 019475          137 LASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       137 li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +|.+|++.||++|||+.|+|+.
T Consensus       850 lI~~Ll~hdP~kRPtA~eLL~s  871 (1351)
T KOG1035|consen  850 LIRWLLSHDPSKRPTATELLNS  871 (1351)
T ss_pred             HHHHHhcCCCccCCCHHHHhhc
Confidence            9999999999999999999864

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.93  E-value=5e-26  Score=196.15  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.+++.||.|||+++ ++|+||+|+||+++.++.++|+|||.+.......    ...+++.|++||.+.+.
T Consensus       100 ~~~~~~~~i~~~i~~~l~~lh~~~-~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~  178 (258)
T cd08215         100 FPEEQILDWFVQLCLALKYLHSRK-ILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNK  178 (258)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-EecccCChHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhccC
Confidence            467889999999999999999999 9999999999999999999999999987654432    34567889999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+||+|+++++|++|..||..........    ... .......+...+..+.+++.+||..+|++|||+.+++
T Consensus       179 ~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll  253 (258)
T cd08215         179 PYNYKSDIWSLGCVLYELCTLKHPFEGENLLELAL----KIL-KGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQIL  253 (258)
T ss_pred             CCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHH----HHh-cCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence            89999999999999999999998875543221111    111 1112234446678899999999999999999999998


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      ++
T Consensus       254 ~~  255 (258)
T cd08215         254 QS  255 (258)
T ss_pred             cC
Confidence            76

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.93  E-value=2.8e-26  Score=204.02  Aligned_cols=157  Identities=14%  Similarity=0.210  Sum_probs=117.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC----CCCeEEecccCcccCCCC-------CCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK----DGNPRLSSFGLMKNSRDG-------KSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~----~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~a   69 (340)
                      ++...+..++.||+.||.|||+++ ++||||||+||+++.    ++.+||+|||++......       ....++..|+|
T Consensus       105 ~~~~~~~~i~~qi~~~l~~lH~~~-i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  183 (316)
T cd07842         105 IPPSMVKSLLWQILNGVHYLHSNW-VLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRA  183 (316)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-EeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccC
Confidence            356678899999999999999999 999999999999999    899999999998865332       22356788999


Q ss_pred             ccccccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHH-----hhhhhhhHhh------------------------h
Q 019475           70 PEYMRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDL-----IRSKNFLLLM------------------------D  119 (340)
Q Consensus        70 PE~~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~-----~~~~~~~~~~------------------------~  119 (340)
                      ||++.+. .++.++|||||||++|+|++|++||.......     ........++                        .
T Consensus       184 PE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  263 (316)
T cd07842         184 PELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMK  263 (316)
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhh
Confidence            9988764 57889999999999999999998876432211     0000000000                        0


Q ss_pred             ccccCCCC-----------chhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          120 SALEGHFS-----------NDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       120 ~~~~~~~~-----------~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .......+           ...+..+.+++.+||..||++|||+.++++|
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~  313 (316)
T cd07842         264 DFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEH  313 (316)
T ss_pred             hccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            00000111           0334578999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.93  E-value=4.7e-26  Score=200.43  Aligned_cols=152  Identities=21%  Similarity=0.295  Sum_probs=121.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.....++.|++.||+|||++| ++|+||+|+||+++.++.++|+|||++......    ....++..|++||.+.+.
T Consensus       113 ~~~~~~~~~~~ql~~~l~~lH~~g-ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~  191 (292)
T cd06657         113 MNEEQIAAVCLAVLKALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRL  191 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcCC
Confidence            467788999999999999999999 999999999999999999999999987654332    234578899999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC--CCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH--FSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      .++.++|+||||+++|+|++|..||........     ...+.......  .....+..+.+++.+||..+|.+||++.+
T Consensus       192 ~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~  266 (292)
T cd06657         192 PYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA-----MKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAE  266 (292)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-----HHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHH
Confidence            889999999999999999999988765322111     11111111111  12345677999999999999999999999


Q ss_pred             HHHH
Q 019475          155 LVIS  158 (340)
Q Consensus       155 ~l~~  158 (340)
                      ++.|
T Consensus       267 ll~~  270 (292)
T cd06657         267 LLKH  270 (292)
T ss_pred             HhcC
Confidence            9986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.93  E-value=3.1e-26  Score=197.88  Aligned_cols=154  Identities=19%  Similarity=0.243  Sum_probs=123.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      ++..+...++.||+.||.|||+++ ++|+||+|+||+++.++.++|+|||.+......   ....++..|++||++.+..
T Consensus        97 l~~~~~~~~~~~i~~~l~~lh~~~-i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  175 (258)
T cd05578          97 FSEEQVKFWICEIVLALEYLHSKG-IIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQG  175 (258)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-eeccCCCHHHeEEcCCCCEEEeecccccccCCCccccccCCChhhcCHHHHcccC
Confidence            456788999999999999999999 999999999999999999999999998765543   2345778899999998888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH--HHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA--KSL  155 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~--~e~  155 (340)
                      ++.++|+||||+++|+|++|..||.......  ...+...... .....+...+..+.++|.+||..+|.+||++  .++
T Consensus       176 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l  252 (258)
T cd05578         176 YSVAVDWWSLGVTAYECLRGKRPYRGHSRTI--RDQIRAKQET-ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDL  252 (258)
T ss_pred             CCCcccchhhHHHHHHHHhCCCCCCCCCccH--HHHHHHHhcc-ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHH
Confidence            9999999999999999999999886543210  1111111111 2234455667899999999999999999999  777


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      +.|
T Consensus       253 ~~~  255 (258)
T cd05578         253 KNH  255 (258)
T ss_pred             hcC
Confidence            654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.93  E-value=1.9e-26  Score=208.08  Aligned_cols=152  Identities=20%  Similarity=0.285  Sum_probs=121.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEcCC-CCeEEecccCcccCCCC--CCcccCCccCCccccccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDKD-GNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~~~-~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~   77 (340)
                      +.+-...|++||+.||.|||++. ||||||||.+||+|+.+ |.|||+|+|++......  .+.+|||.|||||+.- ..
T Consensus       141 n~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYE-E~  219 (632)
T KOG0584|consen  141 NIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYE-EN  219 (632)
T ss_pred             CHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhccccceeccCccccChHHHh-hh
Confidence            34567789999999999999996 59999999999999865 89999999999876544  5578999999999996 78


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC-CCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH-FSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      |+...||||||++++||+|+..|+.....    ...+.+.+..+..+. +..--.+++++||.+||.. .+.|||+.|+|
T Consensus       220 YnE~VDVYaFGMCmLEMvT~eYPYsEC~n----~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL  294 (632)
T KOG0584|consen  220 YNELVDVYAFGMCMLEMVTSEYPYSECTN----PAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELL  294 (632)
T ss_pred             cchhhhhhhhhHHHHHHHhccCChhhhCC----HHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHh
Confidence            99999999999999999999988766432    222333333222211 1112246799999999999 99999999999


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      .+-
T Consensus       295 ~d~  297 (632)
T KOG0584|consen  295 KDP  297 (632)
T ss_pred             hCh
Confidence            863

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.93  E-value=4.7e-26  Score=200.57  Aligned_cols=154  Identities=20%  Similarity=0.285  Sum_probs=121.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.|++.||.|||+++ ++|+||+|+||+++.++.++|+|||++......    ....+++.|++||.+.+.
T Consensus       112 l~~~~~~~i~~~l~~al~~LH~~g-i~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  190 (293)
T cd06647         112 MDEGQIAAVCRECLQALEFLHSNQ-VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK  190 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhccC
Confidence            467788999999999999999999 999999999999999999999999987654433    233577889999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh-hccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM-DSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|+|||||++|++++|..||........    ..... ........+...+..+.+++.+||..+|++||++.++
T Consensus       191 ~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~i  266 (293)
T cd06647         191 AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA----LYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKEL  266 (293)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCChhhh----eeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            899999999999999999999988865321110    00000 0011111223456779999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      +.|-
T Consensus       267 l~h~  270 (293)
T cd06647         267 LQHP  270 (293)
T ss_pred             hcCH
Confidence            9874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=6.5e-26  Score=196.60  Aligned_cols=152  Identities=18%  Similarity=0.216  Sum_probs=122.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      +++....+++.||+.||.|||+++ ++|+||||+||+++.++.++|+|||+++.....       ....++..|+|||.+
T Consensus       103 l~~~~~~~~~~~i~~al~~LH~~~-i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  181 (264)
T cd06653         103 LTENVTRRYTRQILQGVSYLHSNM-IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVI  181 (264)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhh
Confidence            356788899999999999999999 999999999999999999999999998754321       224578899999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .+..++.++|+|||||++|+|++|+.||......    ....+..........+...++.+.+++.+||. +|..||++.
T Consensus       182 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~  256 (264)
T cd06653         182 SGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAM----AAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAE  256 (264)
T ss_pred             cCCCCCccccHHHHHHHHHHHHhCCCCCCccCHH----HHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHH
Confidence            9888899999999999999999999887543111    11222222222334566778889999999999 579999999


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      +++.|
T Consensus       257 ~~~~~  261 (264)
T cd06653         257 FLLRH  261 (264)
T ss_pred             HHhcC
Confidence            99876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.93  E-value=5.4e-26  Score=204.71  Aligned_cols=158  Identities=16%  Similarity=0.194  Sum_probs=120.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~   78 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+||+++.++.++|+|||++...... ....++..|+|||.+.+ ..+
T Consensus       117 l~~~~~~~i~~qi~~aL~~LH~~~-ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  195 (345)
T cd07877         117 LTDDHVQFLIYQILRGLKYIHSAD-IIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHY  195 (345)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCCChHHEEEcCCCCEEEecccccccccccccccccCCCccCHHHHhCccCC
Confidence            467888999999999999999999 999999999999999999999999998865443 23467889999999876 467


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh-------------------hhHh---hhccccC---CCCchhHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN-------------------FLLL---MDSALEG---HFSNDEGTE  133 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~-------------------~~~~---~~~~~~~---~~~~~~~~~  133 (340)
                      +.++|||||||++|+|++|+.||+.......-...                   ....   .......   ......+..
T Consensus       196 ~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (345)
T cd07877         196 NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPL  275 (345)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHH
Confidence            88999999999999999999888643211100000                   0000   0000000   001123567


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +.++|.+||..+|.+|||+.+++.|-
T Consensus       276 ~~~li~~~L~~dp~~R~t~~e~l~h~  301 (345)
T cd07877         276 AVDLLEKMLVLDSDKRITAAQALAHA  301 (345)
T ss_pred             HHHHHHHHcCCChhhcCCHHHHhcCh
Confidence            89999999999999999999999884

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.93  E-value=2.8e-26  Score=217.16  Aligned_cols=154  Identities=17%  Similarity=0.242  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-CCCeEEecccCcccCCCC-----CCcccCCccCCccccccCC-
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRTGR-   77 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~-   77 (340)
                      .+..|+.||+.||.|||+++ |+||||||+|||++. ++.+||+|||+++.....     ....+++.|+|||.+.... 
T Consensus       256 ~i~~i~~qll~aL~yLH~~g-IiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~  334 (566)
T PLN03225        256 IIQTIMRQILFALDGLHSTG-IVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQ  334 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHCC-EEeCcCCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCC
Confidence            34579999999999999999 999999999999985 579999999999754432     3456789999999664222 


Q ss_pred             ---------------------CCCccchhhHHHHHHHHHhCCCCCCcchhHHh---hh-----hhhhHhhhccccCC---
Q 019475           78 ---------------------VTPESVVYSFGTMLLDLLSGKHIPPSHALDLI---RS-----KNFLLLMDSALEGH---  125 (340)
Q Consensus        78 ---------------------~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~---  125 (340)
                                           ++.++|||||||++|||+++..++........   ..     ..+...........   
T Consensus       335 ~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  414 (566)
T PLN03225        335 TPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRR  414 (566)
T ss_pred             CCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhh
Confidence                                 33456999999999999997654332211110   00     00011111110000   


Q ss_pred             ---CCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          126 ---FSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       126 ---~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                         ..........+||.+||+.||++|||+.++++|-
T Consensus       415 ~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~Hp  451 (566)
T PLN03225        415 GFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALAHP  451 (566)
T ss_pred             hhhhccccchHHHHHHHHHccCCcccCCCHHHHhCCc
Confidence               0011123456899999999999999999999874

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.93  E-value=6.5e-26  Score=201.18  Aligned_cols=157  Identities=18%  Similarity=0.241  Sum_probs=116.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---------------CCcccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---------------KSYSTNL   65 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---------------~~~~~~~   65 (340)
                      +++.++..++.||++||.|||+++ ++|+||||+||+++.++.++|+|||+++.....               ....+++
T Consensus       112 ~~~~~~~~i~~~l~~al~~lH~~~-i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (311)
T cd07866         112 LTESQIKCYMLQLLEGINYLHENH-ILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTR  190 (311)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceecc
Confidence            467889999999999999999999 999999999999999999999999998754322               1124577


Q ss_pred             ccCCccccccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH-------------hhhc----cccCCCC
Q 019475           66 AFTPPEYMRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL-------------LMDS----ALEGHFS  127 (340)
Q Consensus        66 ~y~aPE~~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~-------------~~~~----~~~~~~~  127 (340)
                      .|+|||.+.+. .++.++|||||||++|+|++|++||...............             .+..    ......+
T Consensus       191 ~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (311)
T cd07866         191 WYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYP  270 (311)
T ss_pred             CcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCC
Confidence            89999988654 4788999999999999999999887653221110000000             0000    0000011


Q ss_pred             -------chhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          128 -------NDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       128 -------~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                             ....+.+.++|.+||..+|.+|||+.+++.|
T Consensus       271 ~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~  308 (311)
T cd07866         271 RTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEH  308 (311)
T ss_pred             ccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcC
Confidence                   1223678899999999999999999999875

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=8.3e-26  Score=197.66  Aligned_cols=157  Identities=21%  Similarity=0.276  Sum_probs=119.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.|++.||.|||+++ ++||||+|+||+++.++.++|+|||.++......    ...++..|+|||.+.+.
T Consensus        95 ~~~~~~~~~~~~i~~~l~~LH~~~-i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  173 (282)
T cd07829          95 LSPNLIKSIMYQLLRGLAYCHSHR-ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGS  173 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCChheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCC
Confidence            467889999999999999999999 9999999999999999999999999987654332    23456789999998776


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh-----------hhHh-----hhccccC-------CCCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN-----------FLLL-----MDSALEG-------HFSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~-----------~~~~-----~~~~~~~-------~~~~~~~~  132 (340)
                       .++.++|||||||++|++++|.+||............           ....     .......       ...+..+.
T Consensus       174 ~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (282)
T cd07829         174 KHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDP  253 (282)
T ss_pred             cCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccH
Confidence             7899999999999999999998887654321110000           0000     0000000       00112356


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+.+++.+||..+|++||++.+++.+
T Consensus       254 ~~~~~i~~~l~~~P~~Rp~~~~~l~~  279 (282)
T cd07829         254 EGIDLLSKMLQYNPAKRISAKEALKH  279 (282)
T ss_pred             HHHHHHHHhhccCcccCCCHHHHhhC
Confidence            89999999999999999999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.93  E-value=1e-25  Score=194.07  Aligned_cols=152  Identities=20%  Similarity=0.240  Sum_probs=121.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC-------------------------
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR-------------------------   56 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~-------------------------   56 (340)
                      +...+.-++.+|+.||+|||..| ||.|||||+||||.++|++.|+||.++....                         
T Consensus       177 se~~aRFYaAEvl~ALEYLHmlG-ivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~  255 (459)
T KOG0610|consen  177 SESAARFYAAEVLLALEYLHMLG-IVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQP  255 (459)
T ss_pred             chhhHHHHHHHHHHHHHHHHhhc-eeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccc
Confidence            34455568899999999999999 9999999999999999999999998754210                         


Q ss_pred             -----------C------------------------CCCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCC
Q 019475           57 -----------D------------------------GKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP  101 (340)
Q Consensus        57 -----------~------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~  101 (340)
                                 .                        +.+.+||-.|.|||++.|...+.++|.|+|||++|||+.|..||
T Consensus       256 s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPF  335 (459)
T KOG0610|consen  256 SCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPF  335 (459)
T ss_pred             cccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence                       0                        01235788999999999999999999999999999999999999


Q ss_pred             CcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC----HHHHHHH
Q 019475          102 PSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN----AKSLVIS  158 (340)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps----~~e~l~~  158 (340)
                      .+....    ..+..++...+.-+-.+..+..+++||++.|.+||++|..    +.||.+|
T Consensus       336 KG~~~~----~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~H  392 (459)
T KOG0610|consen  336 KGSNNK----ETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRH  392 (459)
T ss_pred             CCCCch----hhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcC
Confidence            886433    2333444333322222356788999999999999999987    8888776

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.93  E-value=7.6e-26  Score=199.28  Aligned_cols=156  Identities=18%  Similarity=0.229  Sum_probs=115.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-CCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++.....++.||+.||+|||+++ ++|+||+|+||+++. ++.+||+|||++......    ....+++.|++||++.+.
T Consensus       100 ~~~~~~~~~~qi~~aL~~LH~~~-i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  178 (294)
T PLN00009        100 NPRLIKTYLYQILRGIAYCHSHR-VLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGS  178 (294)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-eeCCCCCcceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHHHHhCC
Confidence            45667789999999999999999 999999999999985 457999999998754322    233567899999998764


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh-------------------ccccC----CCCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD-------------------SALEG----HFSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~----~~~~~~~~  132 (340)
                       .++.++|||||||++|+|++|.+||............+.....                   +....    ...+..++
T Consensus       179 ~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (294)
T PLN00009        179 RHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEP  258 (294)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCCh
Confidence             4788999999999999999999888653211110000000000                   00000    01223467


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+.+++.+||+.+|++||++.+++++
T Consensus       259 ~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        259 AGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhcC
Confidence            78999999999999999999999976

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.93  E-value=4.3e-27  Score=194.94  Aligned_cols=155  Identities=16%  Similarity=0.193  Sum_probs=125.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      |+..+.-.|++..+.||+|||... -||||||.-|||++.+|+.||+|||.+.....+    ++.+||+.|||||++..-
T Consensus       126 L~E~EIs~iL~~TLKGL~YLH~~~-KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EI  204 (502)
T KOG0574|consen  126 LSEQEISAVLRDTLKGLQYLHDLK-KIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEI  204 (502)
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHH-HHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHh
Confidence            456677889999999999999998 899999999999999999999999999876654    677899999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .|+.++||||||++..||..|++|+..- .+.-.-.-+.....+.+  .-|...+.++.+|++.||...|++|-|+.+++
T Consensus       205 GY~~~ADIWSLGITaIEMAEG~PPYsDI-HPMRAIFMIPT~PPPTF--~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~  281 (502)
T KOG0574|consen  205 GYDTKADIWSLGITAIEMAEGRPPYSDI-HPMRAIFMIPTKPPPTF--KKPEEWSSEFNDFIRSCLIKKPEERKTALRLC  281 (502)
T ss_pred             ccchhhhHhhhcchhhhhhcCCCCcccc-cccceeEeccCCCCCCC--CChHhhhhHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            9999999999999999999999876542 00000000111111111  12445678899999999999999999999999


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      +|.
T Consensus       282 ~H~  284 (502)
T KOG0574|consen  282 EHT  284 (502)
T ss_pred             hhh
Confidence            984

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.93  E-value=6.2e-26  Score=206.49  Aligned_cols=150  Identities=19%  Similarity=0.312  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCc-------ccCCccCCccccccC
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY-------STNLAFTPPEYMRTG   76 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-------~~~~~y~aPE~~~~~   76 (340)
                      .....++.||+.|+.||.+++ +|||||..+|+|+.....|||||||+.+.+......       ...+.|+|||.++..
T Consensus       212 ~~Lcdya~QiA~aM~YLeskr-lvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~  290 (1039)
T KOG0199|consen  212 SRLCDYAMQIAKAMQYLESKR-LVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHR  290 (1039)
T ss_pred             HHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccc
Confidence            456789999999999999999 999999999999999999999999999977655322       225679999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCC-CCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGK-HIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      +++.++|+|+|||++|||+++. .|+.+.     ....+.+.++..-+.+.|..+++++.+++..||..+|.+|||+..|
T Consensus       291 kFShaSDvWmyGVTiWEMFtyGEePW~G~-----~g~qIL~~iD~~erLpRPk~csedIY~imk~cWah~paDRptFsai  365 (1039)
T KOG0199|consen  291 KFSHASDVWMYGVTIWEMFTYGEEPWVGC-----RGIQILKNIDAGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAI  365 (1039)
T ss_pred             cccccchhhhhhhhHHhhhccCCCCCCCC-----CHHHHHHhccccccCCCCCCChHHHHHHHHHhccCCccccccHHHH
Confidence            9999999999999999999954 566554     3445556666666667788999999999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      .+.+
T Consensus       366 r~~~  369 (1039)
T KOG0199|consen  366 REDL  369 (1039)
T ss_pred             HHhH
Confidence            7543

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=1.4e-25  Score=196.45  Aligned_cols=157  Identities=15%  Similarity=0.229  Sum_probs=118.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccccc-C
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT-G   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-~   76 (340)
                      +++.+++.++.|++.+|.|||+++ ++|+||+|+||+++.++.++|+|||.+......   ....++..|+|||++.+ .
T Consensus        96 ~~~~~~~~~~~~l~~~l~~Lh~~~-i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  174 (283)
T cd07830          96 FSESVIRSIIYQILQGLAHIHKHG-FFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRST  174 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCCCCcccccCceeeecCc
Confidence            478899999999999999999999 999999999999999999999999998865543   23457888999998854 4


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh-----------------hhHhhhcccc-------CCCCchhHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN-----------------FLLLMDSALE-------GHFSNDEGT  132 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~-------~~~~~~~~~  132 (340)
                      .++.++|+||||+++++|++|+.||+...........                 ..........       .......+.
T Consensus       175 ~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T cd07830         175 SYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASP  254 (283)
T ss_pred             CcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCH
Confidence            5789999999999999999999888654221110000                 0000000000       000112246


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+.+++.+||..+|++|||+.|++.+
T Consensus       255 ~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         255 EAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             HHHHHHHHhcccCcccCCCHHHHhhC
Confidence            79999999999999999999999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.93  E-value=4.6e-26  Score=205.06  Aligned_cols=156  Identities=19%  Similarity=0.270  Sum_probs=120.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~   78 (340)
                      +++.++..++.||+.||.|||+.| ++||||||+||+++.++.++|+|||.+...... ....++..|+|||.+.+ ..+
T Consensus       115 l~~~~~~~~~~ql~~aL~~LH~~g-i~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  193 (343)
T cd07851         115 LSDDHIQFLVYQILRGLKYIHSAG-IIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHY  193 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHeEECCCCCEEEccccccccccccccCCcccccccCHHHHhCCCCC
Confidence            467889999999999999999999 999999999999999999999999998865433 34467888999999865 367


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHh--------------------hhcccc---C---CCCchhHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL--------------------MDSALE---G---HFSNDEGT  132 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~---~---~~~~~~~~  132 (340)
                      +.++|||||||++|++++|+.||+.......-. .+...                    +.....   .   ......+.
T Consensus       194 ~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  272 (343)
T cd07851         194 NQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLK-RIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANP  272 (343)
T ss_pred             CchHhHHHHHHHHHHHHhCCCCCCCCChHHHHH-HHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCH
Confidence            889999999999999999998886542211100 00000                    000000   0   00112367


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+.++|.+||..+|.+|||+.++++|
T Consensus       273 ~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         273 LAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             HHHHHHHHhCCCChhhCCCHHHHhcC
Confidence            89999999999999999999999877

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.93  E-value=1.6e-25  Score=193.69  Aligned_cols=151  Identities=15%  Similarity=0.248  Sum_probs=121.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.|++.||.|||+++ ++|+||+|+||+++. +.++|+|||++......    ....++..|++||.+.+.
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lH~~~-i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~  180 (260)
T cd08222         103 LSENQVCEWFIQLLLGVHYMHQRR-ILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQ  180 (260)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcC-ccccCCChhheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCHHHHccC
Confidence            467888999999999999999999 999999999999975 67999999998765432    234567889999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|+||||+++|+|++|..||........    ..... .......+...+.++.++|.+||..+|++||++.+++
T Consensus       181 ~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  255 (260)
T cd08222         181 GYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSV----VLRIV-EGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEIL  255 (260)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHH----HHHHH-cCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHh
Confidence            889999999999999999999988754321111    11111 1122233456678899999999999999999999998


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      +|
T Consensus       256 ~~  257 (260)
T cd08222         256 RN  257 (260)
T ss_pred             hC
Confidence            76

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.93  E-value=6.8e-27  Score=190.50  Aligned_cols=148  Identities=19%  Similarity=0.306  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccccc--CCCCCcc
Q 019475            8 RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT--GRVTPES   82 (340)
Q Consensus         8 ~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~--~~~~~~~   82 (340)
                      +|..-.+.||.||.+.-.||||||||+|||++..|.+||||||++.....+   +.-.|...|||||.+..  ..|+.+|
T Consensus       171 ~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRS  250 (361)
T KOG1006|consen  171 HITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRS  250 (361)
T ss_pred             heeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhh
Confidence            344455789999998756999999999999999999999999998766544   23367788999999863  3589999


Q ss_pred             chhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc-CCCCc---hhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           83 VVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE-GHFSN---DEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        83 Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      |+||||+++||+.||..|+..|..-.   ..+.+++....+ -..+.   ..+..+..+|..||.+|-+.||+..+++.+
T Consensus       251 DvWSLGITL~EvAtG~fPyr~w~svf---eql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  251 DVWSLGITLYEVATGNFPYRKWDSVF---EQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKF  327 (361)
T ss_pred             hhhhhcceEeeeecCCCCcchHHHHH---HHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhcC
Confidence            99999999999999998877664321   112222211111 01122   356789999999999999999999999875

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.93  E-value=1e-25  Score=195.08  Aligned_cols=151  Identities=23%  Similarity=0.313  Sum_probs=118.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------------CCcccCCccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------------KSYSTNLAFT   68 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------------~~~~~~~~y~   68 (340)
                      +++..++.++.||+.||.|||+.+ ++|+||+|+||+++.++.++|+|||++......            ....++..|+
T Consensus        90 ~~~~~~~~i~~qi~~~L~~lH~~~-i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (265)
T cd05579          90 LDEDVARIYIAEIVLALEYLHSNG-IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYI  168 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-eecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCcccc
Confidence            467889999999999999999999 999999999999999999999999998754322            1235678899


Q ss_pred             CccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCch--hHHHHHHHHHHhcccCC
Q 019475           69 PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSND--EGTELVRLASRCLQSEA  146 (340)
Q Consensus        69 aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~cl~~~p  146 (340)
                      +||.+.+...+.++|+||||+++|++++|..||........    .........  ..+..  .+..+.+++.+||+.+|
T Consensus       169 ~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~p  242 (265)
T cd05579         169 APEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEI----FQNILNGKI--EWPEDVEVSDEAIDLISKLLVPDP  242 (265)
T ss_pred             CHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHhcCCc--CCCccccCCHHHHHHHHHHhcCCH
Confidence            99999888889999999999999999999988765432211    111111111  12222  36789999999999999


Q ss_pred             CCCCCH---HHHHHH
Q 019475          147 RERPNA---KSLVIS  158 (340)
Q Consensus       147 ~~Rps~---~e~l~~  158 (340)
                      .+|||+   .+++.+
T Consensus       243 ~~Rpt~~~~~~~l~~  257 (265)
T cd05579         243 EKRLGAKSIEEIKNH  257 (265)
T ss_pred             hhcCCCccHHHHhcC
Confidence            999999   555543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=8.5e-26  Score=203.31  Aligned_cols=156  Identities=19%  Similarity=0.300  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC--Cccc---CCccCCccccccCCCC
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK--SYST---NLAFTPPEYMRTGRVT   79 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~---~~~y~aPE~~~~~~~~   79 (340)
                      -.+.++.||..|++||..++ +|||||..+|+|+..+..|||+|||+++......  .+.|   .+.|+|||-+....++
T Consensus       366 vLlyMAtQIsSaMeYLEkkn-FIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFS  444 (1157)
T KOG4278|consen  366 VLLYMATQISSAMEYLEKKN-FIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFS  444 (1157)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-hhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccc
Confidence            35778999999999999999 9999999999999999999999999999876542  2333   4679999999999999


Q ss_pred             CccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .++|||+|||++||+.| |-.|+++     ++...+..+++..++-.-|..|++.+.+||+.||+..|.+||++.|+-+.
T Consensus       445 iKSDVWAFGVLLWEIATYGMsPYPG-----idlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqa  519 (1157)
T KOG4278|consen  445 IKSDVWAFGVLLWEIATYGMSPYPG-----IDLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQA  519 (1157)
T ss_pred             cchhhHHHHHHHHHHHhcCCCCCCC-----ccHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHH
Confidence            99999999999999988 4566766     35566788888888888899999999999999999999999999999999


Q ss_pred             HHhhhhhc
Q 019475          159 LMSLQKEA  166 (340)
Q Consensus       159 l~~~~~~~  166 (340)
                      ++.+....
T Consensus       520 fEtmf~~s  527 (1157)
T KOG4278|consen  520 FETMFSSS  527 (1157)
T ss_pred             HHHHhccc
Confidence            88776544

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.93  E-value=1.1e-25  Score=197.12  Aligned_cols=157  Identities=17%  Similarity=0.265  Sum_probs=118.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ ++||||||+||+++.++.++|+|||.+......    ....++..|++||++.+.
T Consensus        97 ~~~~~~~~~~~qi~~~l~~lH~~~-i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  175 (284)
T cd07836          97 LDPNTVKSFTYQLLKGIAFCHENR-VLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGS  175 (284)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccccccccccccChHHhcCC
Confidence            467889999999999999999999 999999999999999999999999998754322    234567889999998764


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH-----------hhh-ccccCC-----------CCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL-----------LMD-SALEGH-----------FSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~-----------~~~~~~~  132 (340)
                       .++.++|||||||++|+|++|+.||...............           +.. ......           ..+..+.
T Consensus       176 ~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (284)
T cd07836         176 RTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADP  255 (284)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCc
Confidence             4688999999999999999999887654321111100000           000 000000           1123356


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+.+++.+||+.+|.+||++.+++++
T Consensus       256 ~~~~~i~~~l~~~p~~R~~~~~~l~~  281 (284)
T cd07836         256 LGIDLLHRLLQLNPELRISAHDALQH  281 (284)
T ss_pred             HHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            78999999999999999999999865

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.93  E-value=1.7e-25  Score=197.71  Aligned_cols=156  Identities=22%  Similarity=0.248  Sum_probs=117.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.++..++.||+.||.|||+.+ ++|+||||+||+++.++.+||+|||.+.......     ...++..|++||.+.+
T Consensus       113 ~~~~~~~~i~~qi~~aL~~LH~~~-i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  191 (302)
T cd07864         113 FSEDHIKSFMKQLLEGLNYCHKKN-FLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLG  191 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccChHHhcC
Confidence            467899999999999999999999 9999999999999999999999999987654322     2245678999998865


Q ss_pred             C-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc------------cc-------------CCCCch
Q 019475           76 G-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA------------LE-------------GHFSND  129 (340)
Q Consensus        76 ~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~-------------~~~~~~  129 (340)
                      . .++.++|||||||++|+|++|++||....... ....+.+.....            ..             ......
T Consensus       192 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (302)
T cd07864         192 EERYGPAIDVWSCGCILGELFTKKPIFQANQELA-QLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSF  270 (302)
T ss_pred             CCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCC
Confidence            3 46889999999999999999998875432110 000011100000            00             001113


Q ss_pred             hHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          130 EGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       130 ~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+..+.+++.+||..+|.+|||+.+++.+
T Consensus       271 ~~~~~~~li~~~l~~~P~~Rp~~~~il~~  299 (302)
T cd07864         271 IPTPALDLLDHMLTLDPSKRCTAEEALNS  299 (302)
T ss_pred             CCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            46789999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.4e-25  Score=181.57  Aligned_cols=158  Identities=18%  Similarity=0.272  Sum_probs=119.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC--------CcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK--------SYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~y~aPE~   72 (340)
                      |+..+..+++.++..||.|+|.+. |+|||+|+.|+||+.+|.+||+|||+++.+....        ..+.|++|++||.
T Consensus       121 ~sls~Ikk~Mk~Lm~GL~~iHr~k-ilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEl  199 (376)
T KOG0669|consen  121 FSLSEIKKVMKGLMNGLYYIHRNK-ILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPEL  199 (376)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhh-HHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHH
Confidence            456788899999999999999999 9999999999999999999999999997655332        2345899999999


Q ss_pred             cccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhH-------------------HhhhhhhhHhhh--ccccCC---C-
Q 019475           73 MRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALD-------------------LIRSKNFLLLMD--SALEGH---F-  126 (340)
Q Consensus        73 ~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~-------------------~~~~~~~~~~~~--~~~~~~---~-  126 (340)
                      +.|. .++++.|||.-|||+.||++|.+.+.+....                   ......+.+.+.  +...+.   . 
T Consensus       200 lLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~  279 (376)
T KOG0669|consen  200 LLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVK  279 (376)
T ss_pred             hhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhhh
Confidence            9876 4899999999999999999999877664211                   011111111110  000000   0 


Q ss_pred             ----CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          127 ----SNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       127 ----~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                          |-.-..+..+|+.++|..||.+|+++++++.|-
T Consensus       280 n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~  316 (376)
T KOG0669|consen  280 NRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHD  316 (376)
T ss_pred             hhcccccCChhHHHHHHHHhccCcccCcchHhhhchh
Confidence                001124678999999999999999999999884

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.93  E-value=1e-25  Score=202.74  Aligned_cols=157  Identities=15%  Similarity=0.172  Sum_probs=115.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-CCCeEEecccCcccCCCC-------CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~   72 (340)
                      +++.....++.||+.||.|||+.| ++||||||+||+++. ++.++++|||.+......       ....++..|+|||.
T Consensus       111 l~~~~~~~~~~qi~~aL~~LH~~g-ivH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  189 (342)
T cd07854         111 LSEEHARLFMYQLLRGLKYIHSAN-VLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRL  189 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHH
Confidence            467788999999999999999999 999999999999974 557899999998754321       12346788999998


Q ss_pred             ccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh--------------h----Hhhh-ccccC-----CCC
Q 019475           73 MRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF--------------L----LLMD-SALEG-----HFS  127 (340)
Q Consensus        73 ~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~--------------~----~~~~-~~~~~-----~~~  127 (340)
                      +.+ ..++.++|||||||++|+|++|+.||.............              .    .... .....     ...
T Consensus       190 ~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (342)
T cd07854         190 LLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLL  269 (342)
T ss_pred             HhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHc
Confidence            754 457889999999999999999999886432111000000              0    0000 00000     011


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ...+.++.+||.+||..||.+|||+.+++.|
T Consensus       270 ~~~~~~~~~li~~~L~~dP~~R~t~~ell~h  300 (342)
T cd07854         270 PGVNPEALDFLEQILTFNPMDRLTAEEALMH  300 (342)
T ss_pred             cCCCHHHHHHHHHHhCCCchhccCHHHHhCC
Confidence            2345778999999999999999999999876

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.92  E-value=3.5e-25  Score=190.20  Aligned_cols=151  Identities=23%  Similarity=0.292  Sum_probs=122.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.....++.|++.||.|||+.+ ++|+||+|+||+++.++.++|+|||.+......    ....++..|++||.+.+.
T Consensus        90 l~~~~~~~~~~qi~~~l~~lh~~~-~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~  168 (250)
T cd05123          90 FSEERARFYAAEIVLALEYLHSLG-IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGK  168 (250)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCC
Confidence            467889999999999999999999 999999999999999999999999998765442    234568899999999888


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH---H
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA---K  153 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~---~  153 (340)
                      ..+.++|+||||+++|++++|..||.......    ....+..  .....+...+..+.+++.+||..||+.||++   .
T Consensus       169 ~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~----~~~~~~~--~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~  242 (250)
T cd05123         169 GYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKE----IYEKILK--DPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAE  242 (250)
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH----HHHHHhc--CCCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHH
Confidence            88999999999999999999998885542211    1111111  1223455557889999999999999999999   6


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      +++.|
T Consensus       243 ~l~~~  247 (250)
T cd05123         243 EIKAH  247 (250)
T ss_pred             HHHhC
Confidence            66654

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.92  E-value=2.2e-25  Score=195.83  Aligned_cols=156  Identities=20%  Similarity=0.269  Sum_probs=118.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+...++.|++.||.|||+.+ ++||||+|+||+++.++.++|+|||+++......     ...++..|++||.+.+
T Consensus       102 ~~~~~~~~~~~ql~~~l~~lH~~~-~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  180 (288)
T cd05583         102 FTESEVRVYIAEIVLALDHLHQLG-IIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRG  180 (288)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHHHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcC
Confidence            456788899999999999999999 9999999999999999999999999987644321     2356889999999876


Q ss_pred             CC--CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GR--VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~--~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..  .+.++|+||||+++|+|++|..||...................  ....+...+..+.+++.+||+.+|++|||+.
T Consensus       181 ~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~  258 (288)
T cd05583         181 GSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKS--KPPFPKTMSAEARDFIQKLLEKDPKKRLGAN  258 (288)
T ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHcc--CCCCCcccCHHHHHHHHHHhcCCHhhccCcc
Confidence            55  6889999999999999999998875321111011111111111  1233445667899999999999999999977


Q ss_pred             HHHHHH
Q 019475          154 SLVISL  159 (340)
Q Consensus       154 e~l~~l  159 (340)
                      ++...|
T Consensus       259 ~~~~~l  264 (288)
T cd05583         259 GADEIK  264 (288)
T ss_pred             hHHHHh
Confidence            665544

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.92  E-value=2.6e-25  Score=194.27  Aligned_cols=151  Identities=23%  Similarity=0.302  Sum_probs=122.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---------------------   59 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---------------------   59 (340)
                      +++..++.|+.|++.||.+||+++ ++|+||+|+||+++.++.++++|||.+.......                     
T Consensus        99 l~~~~~~~i~~ql~~~l~~Lh~~~-~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (280)
T cd05581          99 LDEKCTRFYAAEILLALEYLHSKG-IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRR  177 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCcccccccccccc
Confidence            578899999999999999999999 9999999999999999999999999987544322                     


Q ss_pred             ---CcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHH
Q 019475           60 ---SYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVR  136 (340)
Q Consensus        60 ---~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (340)
                         ...++..|++||.+.+..++.++||||||++++++++|+.||......    ..+....  ......+...++.+.+
T Consensus       178 ~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~  251 (280)
T cd05581         178 RFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEY----LTFQKIL--KLEYSFPPNFPPDAKD  251 (280)
T ss_pred             ccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHH----HHHHHHH--hcCCCCCCccCHHHHH
Confidence               224578899999998888999999999999999999999887654311    1111111  1122344556788999


Q ss_pred             HHHHhcccCCCCCCCH----HHHHHH
Q 019475          137 LASRCLQSEARERPNA----KSLVIS  158 (340)
Q Consensus       137 li~~cl~~~p~~Rps~----~e~l~~  158 (340)
                      ++.+||..+|.+|||+    .++++|
T Consensus       252 li~~~l~~~p~~R~~~~~~~~~ll~~  277 (280)
T cd05581         252 LIEKLLVLDPQDRLGVNEGYDELKAH  277 (280)
T ss_pred             HHHHHhcCCHhhCCCcccCHHHHhcC
Confidence            9999999999999999    888765

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.92  E-value=2.1e-25  Score=200.14  Aligned_cols=158  Identities=17%  Similarity=0.189  Sum_probs=118.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------------------CCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------------------KSYS   62 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------------------~~~~   62 (340)
                      +++...+.++.|++.||.|||+++ ++|+||+|+||+++.++.++|+|||.+......                  ....
T Consensus       116 ~~~~~~~~~~~ql~~aL~~LH~~~-i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (335)
T PTZ00024        116 LTESQVKCILLQILNGLNVLHKWY-FMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKV  194 (335)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecccccHHHeEECCCCCEEECCccceeecccccccccccccccccccccccccc
Confidence            467788999999999999999999 999999999999999999999999998765410                  1223


Q ss_pred             cCCccCCccccccCC-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc----------------cC-
Q 019475           63 TNLAFTPPEYMRTGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL----------------EG-  124 (340)
Q Consensus        63 ~~~~y~aPE~~~~~~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-  124 (340)
                      ++..|+|||.+.+.. ++.++|||||||++|+|++|..||........- ..+........                .. 
T Consensus       195 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (335)
T PTZ00024        195 VTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQL-GRIFELLGTPNEDNWPQAKKLPLYTEFTPR  273 (335)
T ss_pred             cccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH-HHHHHHhCCCchhhCcchhhcccccccCcC
Confidence            577899999987644 688999999999999999999888654321110 00000000000                00 


Q ss_pred             ------CCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          125 ------HFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       125 ------~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                            ......+..+.++|.+||..+|++|||+++++.|.+
T Consensus       274 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~  315 (335)
T PTZ00024        274 KPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEY  315 (335)
T ss_pred             CcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCcc
Confidence                  011233567899999999999999999999998744

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.92  E-value=3e-25  Score=198.42  Aligned_cols=156  Identities=20%  Similarity=0.285  Sum_probs=118.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRVT   79 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~~   79 (340)
                      ++.....++.||+.||.|||+++ ++||||+|+||+++.++.++|+|||.+...... ....++..|++||.+.+ ..++
T Consensus       106 ~~~~~~~~~~ql~~aL~~LH~~~-iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  184 (328)
T cd07856         106 EKQFIQYFLYQILRGLKYVHSAG-VVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYD  184 (328)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHEeECCCCCEEeCccccccccCCCcCCCcccccccCceeeeccCCcC
Confidence            45667789999999999999999 999999999999999999999999998765443 33467888999998866 5688


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhh-------------------hhhhHhhhccc-cCC-----CCchhHHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRS-------------------KNFLLLMDSAL-EGH-----FSNDEGTEL  134 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~-------------------~~~~~~~~~~~-~~~-----~~~~~~~~~  134 (340)
                      .++|||||||++|+|++|+.||+.........                   ......+.... ...     ..+..+..+
T Consensus       185 ~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (328)
T cd07856         185 VEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSA  264 (328)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHH
Confidence            99999999999999999998886542210000                   00000000000 000     112345789


Q ss_pred             HHHHHHhcccCCCCCCCHHHHHHH
Q 019475          135 VRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       135 ~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .++|.+||+.+|++|||+.+++.+
T Consensus       265 ~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         265 IDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             HHHHHHHcCCChhhCCCHHHHhcC
Confidence            999999999999999999999876

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.92  E-value=2.2e-25  Score=200.56  Aligned_cols=157  Identities=16%  Similarity=0.239  Sum_probs=119.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~   78 (340)
                      +++..+..++.||+.||.|||++| ++||||||+||+++.++.++|+|||++...... ....+++.|++||.+.+ ..+
T Consensus       115 l~~~~~~~i~~qi~~al~~LH~~g-i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  193 (343)
T cd07880         115 LSEDRIQFLVYQMLKGLKYIHAAG-IIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHY  193 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCCEEEeecccccccccCccccccCCcccCHHHHhCCCCC
Confidence            467889999999999999999999 999999999999999999999999998865543 23456889999999875 457


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhh----------hh---------hHhhhcc--cc----CCCCchhHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK----------NF---------LLLMDSA--LE----GHFSNDEGTE  133 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~----------~~---------~~~~~~~--~~----~~~~~~~~~~  133 (340)
                      +.++|+|||||++|++++|..||...........          .+         .......  ..    .......+..
T Consensus       194 ~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (343)
T cd07880         194 TQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPL  273 (343)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChH
Confidence            8899999999999999999988865321110000          00         0000000  00    0011234567


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.++|.+||..||.+|||+.+++.|
T Consensus       274 ~~~li~~~l~~dP~~R~t~~~~l~~  298 (343)
T cd07880         274 AVNVLEKMLVLDAESRITAAEALAH  298 (343)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhcC
Confidence            8999999999999999999999876

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=2.5e-25  Score=186.25  Aligned_cols=144  Identities=22%  Similarity=0.355  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----CCCCcccCCccCCccccccCCCCCccc
Q 019475            8 RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMRTGRVTPESV   83 (340)
Q Consensus         8 ~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~D   83 (340)
                      -+-.+|+.||.|||+++ ||.||||.+|.|++.+|++||+|||+|+..-    ..++.+||+.|.|||++....|+.+.|
T Consensus       272 FYGaEIvsAL~YLHs~~-ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVD  350 (516)
T KOG0690|consen  272 FYGAEIVSALGYLHSRN-IVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVD  350 (516)
T ss_pred             hhhHHHHHHhhhhhhCC-eeeeechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhccccccceee
Confidence            35678999999999999 9999999999999999999999999998532    236789999999999999999999999


Q ss_pred             hhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CHHHHHHH
Q 019475           84 VYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NAKSLVIS  158 (340)
Q Consensus        84 i~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~~e~l~~  158 (340)
                      .|.+|||+|||++|+.||+......    .+.-++-..  -.+|...+++.+.|+...|..||.+|.     .+.||.+|
T Consensus       351 WWG~GVVMYEMmCGRLPFyn~dh~k----LFeLIl~ed--~kFPr~ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h  424 (516)
T KOG0690|consen  351 WWGVGVVMYEMMCGRLPFYNKDHEK----LFELILMED--LKFPRTLSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRH  424 (516)
T ss_pred             hhhhhHHHHHHHhccCcccccchhH----HHHHHHhhh--ccCCccCCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhh
Confidence            9999999999999999998753221    111111111  236777888999999999999999995     46666655

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.92  E-value=5.2e-25  Score=210.48  Aligned_cols=159  Identities=20%  Similarity=0.315  Sum_probs=131.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCc-----c--cCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY-----S--TNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-----~--~~~~y~aPE~~   73 (340)
                      |+....+.++.||+.|++||+++. +|||||-.+|||+..+..+||+|||+++........     .  -...|||||.+
T Consensus       415 L~~~dLlsfa~QIa~GMe~L~~~~-~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl  493 (609)
T KOG0200|consen  415 LTTKDLLSFAYQIANGMEYLASVP-CVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESL  493 (609)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhCC-ccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHh
Confidence            466789999999999999999999 999999999999999999999999999964443222     1  23459999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCC-CCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGK-HIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      ....++.++||||||+++||+++.. .|+++..    ....+.+.+..+.+...|..++.++.++++.||+.+|++||++
T Consensus       494 ~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~----~~~~l~~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F  569 (609)
T KOG0200|consen  494 FDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP----PTEELLEFLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTF  569 (609)
T ss_pred             ccCcccccchhhHHHHHHHHHhhCCCCCCCCCC----cHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCH
Confidence            9999999999999999999999955 4554411    1223344566666777788889999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 019475          153 KSLVISLMSLQK  164 (340)
Q Consensus       153 ~e~l~~l~~~~~  164 (340)
                      .++.+.++....
T Consensus       570 ~~~~~~~~~~l~  581 (609)
T KOG0200|consen  570 SECVEFFEKHLQ  581 (609)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=6.9e-25  Score=222.67  Aligned_cols=163  Identities=24%  Similarity=0.408  Sum_probs=125.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHH---hCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCS---SKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH---~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~   77 (340)
                      ++|.++.+|+.||+.||+|||   +.+ ++||||||+||+++.++.+++. ||............++..|+|||++.+..
T Consensus       777 l~~~~~~~i~~~ia~~L~yLH~~~~~~-iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  854 (968)
T PLN00113        777 LSWERRRKIAIGIAKALRFLHCRCSPA-VVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISSAYVAPETRETKD  854 (968)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCCCC-eecCCCCHHhEEECCCCceEEE-eccccccccCCCccccccccCcccccCCC
Confidence            579999999999999999999   557 9999999999999999888876 66655444444557789999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhH-----H-----hhhhhhhHhhhccccC--CCCchhHHHHHHHHHHhcccC
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALD-----L-----IRSKNFLLLMDSALEG--HFSNDEGTELVRLASRCLQSE  145 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~  145 (340)
                      ++.++|||||||++|||++|+.||......     .     .........+++....  ..+.....++.+++.+||+.+
T Consensus       855 ~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~  934 (968)
T PLN00113        855 ITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATD  934 (968)
T ss_pred             CCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCC
Confidence            999999999999999999999887432110     0     0011111222222221  122344567889999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhhh
Q 019475          146 ARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       146 p~~Rps~~e~l~~l~~~~~~  165 (340)
                      |++|||+.++++.|+.+...
T Consensus       935 P~~RPt~~evl~~L~~~~~~  954 (968)
T PLN00113        935 PTARPCANDVLKTLESASRS  954 (968)
T ss_pred             chhCcCHHHHHHHHHHhhcc
Confidence            99999999999999887654

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.92  E-value=4.9e-25  Score=193.77  Aligned_cols=155  Identities=19%  Similarity=0.273  Sum_probs=118.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+...++.||+.||.|||+.+ ++||||+|+||+++.++.++|+|||++......     ....++..|++||.+.+
T Consensus       102 l~~~~~~~~~~qi~~al~~lH~~~-i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  180 (290)
T cd05613         102 FKEQEVQIYSGEIVLALEHLHKLG-IIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRG  180 (290)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccCCCHHHeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccC
Confidence            356777888899999999999999 999999999999999999999999998765432     13457889999999875


Q ss_pred             C--CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC---
Q 019475           76 G--RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP---  150 (340)
Q Consensus        76 ~--~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp---  150 (340)
                      .  .++.++||||||+++|+|++|..||......... ......+.. .....+...+..+.+++.+||..+|.+||   
T Consensus       181 ~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~  258 (290)
T cd05613         181 GDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQ-AEISRRILK-SEPPYPQEMSALAKDIIQRLLMKDPKKRLGCG  258 (290)
T ss_pred             CCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccH-HHHHHHhhc-cCCCCCccCCHHHHHHHHHHhcCCHHHhcCCC
Confidence            3  4678999999999999999999887532111000 111111111 11233455678899999999999999997   


Q ss_pred             --CHHHHHHH
Q 019475          151 --NAKSLVIS  158 (340)
Q Consensus       151 --s~~e~l~~  158 (340)
                        ++.+++.+
T Consensus       259 ~~~~~~l~~~  268 (290)
T cd05613         259 PSDADEIKKH  268 (290)
T ss_pred             CCCHHHHHcC
Confidence              77888766

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=5.7e-25  Score=193.72  Aligned_cols=150  Identities=18%  Similarity=0.263  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---CcccCCccCCccccccCCCCCcc
Q 019475            6 RLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRTGRVTPES   82 (340)
Q Consensus         6 ~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~~~~~~   82 (340)
                      ..-++.-+++|++|||++| ||.|||||+|++++.+|-+||.|||+++....+.   +.+||+.|.|||++.....+.++
T Consensus       522 arF~~acv~EAfeYLH~k~-iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~av  600 (732)
T KOG0614|consen  522 ARFYVACVLEAFEYLHRKG-IIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAV  600 (732)
T ss_pred             hhhhHHHHHHHHHHHHhcC-ceeccCChhheeeccCCceEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchhh
Confidence            3346777889999999999 9999999999999999999999999999877653   57899999999999999999999


Q ss_pred             chhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-ccCCCCchhHHHHHHHHHHhcccCCCCCC-----CHHHHH
Q 019475           83 VVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-LEGHFSNDEGTELVRLASRCLQSEARERP-----NAKSLV  156 (340)
Q Consensus        83 Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~~e~l  156 (340)
                      |.||||+++|||++|.+||.+...-     ....++-.. -.-.+|..++....+||++.+..+|.+|.     .+.++.
T Consensus       601 DyWaLGIli~ELL~G~pPFs~~dpm-----ktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIk  675 (732)
T KOG0614|consen  601 DYWALGILIYELLTGSPPFSGVDPM-----KTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNPTERLGYQKGGINDIK  675 (732)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCchH-----HHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCcHhhhccccCChHHHH
Confidence            9999999999999999998764221     111111111 12346777888999999999999999996     478888


Q ss_pred             HHHHh
Q 019475          157 ISLMS  161 (340)
Q Consensus       157 ~~l~~  161 (340)
                      +|-+-
T Consensus       676 kH~Wf  680 (732)
T KOG0614|consen  676 KHRWF  680 (732)
T ss_pred             hhhhh
Confidence            87543

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.92  E-value=1.5e-25  Score=176.32  Aligned_cols=108  Identities=20%  Similarity=0.287  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC--C-cccCCccCCcccccc----CCC
Q 019475            6 RLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK--S-YSTNLAFTPPEYMRT----GRV   78 (340)
Q Consensus         6 ~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~-~~~~~~y~aPE~~~~----~~~   78 (340)
                      .=+|+..++.||.|||++-.+||||+||+|||++.+|+||+||||++-...++-  + -.|...|||||.+..    ..|
T Consensus       150 lGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY  229 (282)
T KOG0984|consen  150 LGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGY  229 (282)
T ss_pred             hhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccc
Confidence            337899999999999999779999999999999999999999999988766552  2 357788999998863    368


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN  113 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~  113 (340)
                      +.++||||||+++.||.+++.|+..|..+......
T Consensus       230 ~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkq  264 (282)
T KOG0984|consen  230 SVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQ  264 (282)
T ss_pred             eeehhhhhhhhhhhhhhhccccccccCCHHHHHHH
Confidence            99999999999999999999999888766544433

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-24  Score=207.77  Aligned_cols=153  Identities=18%  Similarity=0.210  Sum_probs=122.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMR-   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~-   74 (340)
                      +|...+.-++..|+.||.-+|+.| +|||||||+|||++..|++||+|||.|-.....     ...+|||.|.+||+++ 
T Consensus       172 ~pE~~ArFY~aEiVlAldslH~mg-yVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs  250 (1317)
T KOG0612|consen  172 LPEDWARFYTAEIVLALDSLHSMG-YVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQS  250 (1317)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhcc-ceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHh
Confidence            345566678899999999999999 999999999999999999999999999877643     3458999999999996 


Q ss_pred             ---c-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCC--chhHHHHHHHHHHhcccCCCC
Q 019475           75 ---T-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS--NDEGTELVRLASRCLQSEARE  148 (340)
Q Consensus        75 ---~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~cl~~~p~~  148 (340)
                         + +.|++.+|.||+||++|||+.|..||+.+..-..    ...+++..-.-.+|  ..++++..+||.+.+. +|+.
T Consensus       251 ~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveT----Y~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~  325 (1317)
T KOG0612|consen  251 QGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVET----YGKIMNHKESLSFPDETDVSEEAKDLIEALLC-DREV  325 (1317)
T ss_pred             hcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHH----HHHHhchhhhcCCCcccccCHHHHHHHHHHhc-Chhh
Confidence               2 5689999999999999999999999987643322    22222221112233  4578999999998775 7888


Q ss_pred             CCC---HHHHHHHH
Q 019475          149 RPN---AKSLVISL  159 (340)
Q Consensus       149 Rps---~~e~l~~l  159 (340)
                      |..   ++++..|.
T Consensus       326 RLgrngiedik~Hp  339 (1317)
T KOG0612|consen  326 RLGRNGIEDIKNHP  339 (1317)
T ss_pred             hcccccHHHHHhCc
Confidence            877   99998885

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.91  E-value=2.4e-24  Score=183.69  Aligned_cols=153  Identities=23%  Similarity=0.323  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..++.++.+++.++.+||+.+ ++|+||+|+||+++.++.++++|||.+......   ....++..|++||.+.+..
T Consensus        84 ~~~~~~~~~~~~l~~~l~~lh~~~-i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~  162 (244)
T smart00220       84 LSEDEARFYARQILSALEYLHSNG-IIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKG  162 (244)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-eecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHHHccCC
Confidence            467889999999999999999999 999999999999999999999999998876653   3456788999999998888


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCch--hHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSND--EGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ++.++|||+||++++++++|..|+....    ....................  .+..+.+++.+||..+|++||++.++
T Consensus       163 ~~~~~Di~slG~~l~~l~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~  238 (244)
T smart00220      163 YGKAVDVWSLGVILYELLTGKPPFPGDD----QLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEA  238 (244)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCC----cHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHH
Confidence            8999999999999999999998875521    11111111111111111111  56789999999999999999999999


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      +++
T Consensus       239 ~~~  241 (244)
T smart00220      239 LQH  241 (244)
T ss_pred             hhC
Confidence            874

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.91  E-value=1.7e-24  Score=166.99  Aligned_cols=157  Identities=19%  Similarity=0.307  Sum_probs=120.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++.+...+++.|++.||.|+|+++ +.|||+||.|.|++.+|.+|++|||+++-++-.    +..+.|.+|++|.++.|.
T Consensus        98 ~d~~~~rsfmlqllrgl~fchshn-vlhrdlkpqnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfga  176 (292)
T KOG0662|consen   98 LDPEIVRSFMLQLLRGLGFCHSHN-VLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA  176 (292)
T ss_pred             CCHHHHHHHHHHHHhhhhhhhhhh-hhhccCCcceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeee
Confidence            345677889999999999999999 999999999999999999999999999866533    445679999999999987


Q ss_pred             C-CCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccc--------------cCCC---------CchhH
Q 019475           77 R-VTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSAL--------------EGHF---------SNDEG  131 (340)
Q Consensus        77 ~-~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---------~~~~~  131 (340)
                      + |+.+.|+||-|||+.|+.. |++.|++......-...+..+..+.-              .+.+         .+...
T Consensus       177 kly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~ln  256 (292)
T KOG0662|consen  177 KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLN  256 (292)
T ss_pred             ehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhhhhc
Confidence            7 7899999999999999976 66667765433322222222211100              0011         11233


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ...++++.+.|..+|.+|.++++.++|
T Consensus       257 s~grdllqkll~cnp~qrisaeaalqh  283 (292)
T KOG0662|consen  257 STGRDLLQKLLKCNPAQRISAEAALQH  283 (292)
T ss_pred             chhHHHHHHHhccCcccccCHHHHhcC
Confidence            457899999999999999999999876

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.91  E-value=4.8e-24  Score=177.24  Aligned_cols=106  Identities=22%  Similarity=0.323  Sum_probs=102.9

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      ....++.++.+|+.+++.++|++|+..|++||+++|. |+++|.|||.+|.++|.|+.|++||++||.+||.+.++|-++
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4566889999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.+|+.+|+|++|++.|++||++||..
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~N  182 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDN  182 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCc
Confidence            999999999999999999999999973

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=5.3e-24  Score=183.51  Aligned_cols=139  Identities=21%  Similarity=0.358  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----CCCCcccCCccCCccccccCCCCC
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMRTGRVTP   80 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~   80 (340)
                      ..+-++.+|+-||-|||++| ||.||||.+||+++.+|++||+|||+++..-    .+.+..||+.|+|||++...+|+.
T Consensus       451 ~AvFYAaEiaigLFFLh~kg-IiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgk  529 (683)
T KOG0696|consen  451 VAVFYAAEIAIGLFFLHSKG-IIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGK  529 (683)
T ss_pred             hhhhhhHHHHHHhhhhhcCC-eeeeeccccceEeccCCceEeeecccccccccCCcceeeecCCCcccccceEEeccccc
Confidence            34557899999999999999 9999999999999999999999999998532    335678999999999999999999


Q ss_pred             ccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           81 ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        81 ~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      ++|.||+||++|||+.|++||.++..+.    .+..+.+..  -.+|...+.+...+....|...|.+|.
T Consensus       530 svDWWa~GVLLyEmlaGQpPFdGeDE~e----lF~aI~ehn--vsyPKslSkEAv~ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  530 SVDWWAFGVLLYEMLAGQPPFDGEDEDE----LFQAIMEHN--VSYPKSLSKEAVAICKGLLTKHPGKRL  593 (683)
T ss_pred             chhHHHHHHHHHHHHcCCCCCCCCCHHH----HHHHHHHcc--CcCcccccHHHHHHHHHHhhcCCcccc
Confidence            9999999999999999999998763322    223333322  245777889999999999999999995

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.90  E-value=7.4e-24  Score=181.41  Aligned_cols=157  Identities=21%  Similarity=0.261  Sum_probs=131.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC------cccCCccCCcccccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS------YSTNLAFTPPEYMRT   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~y~aPE~~~~   75 (340)
                      +..+...++.|++.|++|||.++ +||.||..+|++|++.-++||+|-.+++...+...      ......||+||.+..
T Consensus       394 tt~qlV~masQla~am~hlh~~~-ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n  472 (563)
T KOG1024|consen  394 TTIQLVLMASQLAMAMEHLHNHG-VIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQN  472 (563)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcC-cccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhh
Confidence            34577889999999999999999 99999999999999999999999999987665432      233578999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..|+.++|+||||+++|||+| |+.|+-.     ++.......+..+.+-..|-.++.++..++..||...|++||++++
T Consensus       473 ~~yssasDvWsfGVllWELmtlg~~Pyae-----IDPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Q  547 (563)
T KOG1024|consen  473 SHYSSASDVWSFGVLLWELMTLGKLPYAE-----IDPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQ  547 (563)
T ss_pred             hhhcchhhhHHHHHHHHHHHhcCCCCccc-----cCHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHH
Confidence            999999999999999999998 4555432     3344455556666666677889999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q 019475          155 LVISLMSLQK  164 (340)
Q Consensus       155 ~l~~l~~~~~  164 (340)
                      +..-|.....
T Consensus       548 lv~cLseF~~  557 (563)
T KOG1024|consen  548 LVICLSEFHT  557 (563)
T ss_pred             HHHHHHHHHH
Confidence            9988876544

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.90  E-value=6.1e-24  Score=190.12  Aligned_cols=157  Identities=20%  Similarity=0.247  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCc------ccCCccCCccccccCC
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY------STNLAFTPPEYMRTGR   77 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~------~~~~~y~aPE~~~~~~   77 (340)
                      +..++|+.||+.|++||.+-+ +|||||.++|||++.++++||+|||+++..-.+..+      +-.+.|||+|.+.-++
T Consensus       637 ~~~vsi~tqiasgmaYLes~n-fVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgk  715 (807)
T KOG1094|consen  637 APGVSICTQIASGMAYLESLN-FVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGK  715 (807)
T ss_pred             chhHHHHHHHHHHHHHHHhhc-hhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhcc
Confidence            456789999999999999999 999999999999999999999999999965444333      3358999999999999


Q ss_pred             CCCccchhhHHHHHHHHHh--CCCCCCcchhHHhhhhhhhHhhhccc---cCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           78 VTPESVVYSFGTMLLDLLS--GKHIPPSHALDLIRSKNFLLLMDSAL---EGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~--g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      ++.++|+|+||+++||+++  ...|+..-..+..- .+...+++...   -...|.-++..+.++|.+||..|.++|||+
T Consensus       716 FttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vv-en~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~RPsF  794 (807)
T KOG1094|consen  716 FTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVV-ENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQRPSF  794 (807)
T ss_pred             ccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHH-HhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhcCCCH
Confidence            9999999999999999865  44565443222211 11122222111   122456678889999999999999999999


Q ss_pred             HHHHHHHHhh
Q 019475          153 KSLVISLMSL  162 (340)
Q Consensus       153 ~e~l~~l~~~  162 (340)
                      +++..+|.+.
T Consensus       795 e~lh~~lq~~  804 (807)
T KOG1094|consen  795 EQLHLFLQED  804 (807)
T ss_pred             HHHHHHHHHh
Confidence            9999888654

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-24  Score=177.32  Aligned_cols=158  Identities=16%  Similarity=0.222  Sum_probs=115.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-----cccCCccCCccccccC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-----YSTNLAFTPPEYMRTG   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~y~aPE~~~~~   76 (340)
                      +-..+.-+++||++||.|||+.+ |+||||||-|.|++.+-.+||||||+++.......     .+.|-.|++||+++|.
T Consensus       154 s~DHvKVFlYQILRGLKYLHsA~-ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGa  232 (449)
T KOG0664|consen  154 TPDHVKVFVYQILRGLKYLHTAN-ILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGA  232 (449)
T ss_pred             CcchhhhhHHHHHhhhHHHhhcc-hhhccCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcc
Confidence            33455668899999999999999 99999999999999999999999999997655432     2457889999999975


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchh----HHh------------hh---hhhhHhhhccccCC---------CC
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHAL----DLI------------RS---KNFLLLMDSALEGH---------FS  127 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~----~~~------------~~---~~~~~~~~~~~~~~---------~~  127 (340)
                       .|+.+.||||+|||+.||+.++..|.-...    +.+            +.   +.-.-++....+.+         .+
T Consensus       233 RhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~  312 (449)
T KOG0664|consen  233 RRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASP  312 (449)
T ss_pred             hhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCC
Confidence             589999999999999999988866633210    000            00   00000111111110         11


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      .....+...++..++..||.+|.+.++.+.++-
T Consensus       313 ~~~~heav~~~~~~l~~d~dkris~~~A~~~~~  345 (449)
T KOG0664|consen  313 DDKNHEAVDLLQKLLHFDPDKRISVEEALQHRY  345 (449)
T ss_pred             cccchHHHHHHHHHhCCCCcccccHhhhccccc
Confidence            223356778889999999999999999988753

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.90  E-value=2.2e-23  Score=182.41  Aligned_cols=167  Identities=17%  Similarity=0.198  Sum_probs=124.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC--------CceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG--------RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~--------~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~   66 (340)
                      ++|.+..+|+..+++||+|||+.-        +|+|||||+.||||..|+++.|+|||++..+.++.      ..+||..
T Consensus       304 isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~R  383 (534)
T KOG3653|consen  304 ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRR  383 (534)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhh
Confidence            489999999999999999999752        49999999999999999999999999998776542      3579999


Q ss_pred             cCCccccccCCCC------CccchhhHHHHHHHHHhCCCCCCcc-----------------hhHHhhhhhhhHhhhcccc
Q 019475           67 FTPPEYMRTGRVT------PESVVYSFGTMLLDLLSGKHIPPSH-----------------ALDLIRSKNFLLLMDSALE  123 (340)
Q Consensus        67 y~aPE~~~~~~~~------~~~Di~slG~~~~el~~g~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~  123 (340)
                      |||||++.|.-.-      .+.||||+|.|+|||+++...+...                 ..+.+......+...+.++
T Consensus       384 YMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p  463 (534)
T KOG3653|consen  384 YMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIP  463 (534)
T ss_pred             hcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCCh
Confidence            9999999765321      3689999999999999865322100                 1111222222222222221


Q ss_pred             CCC-CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhhhcc
Q 019475          124 GHF-SNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAE  167 (340)
Q Consensus       124 ~~~-~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~~  167 (340)
                      ..+ .......+++.+..||+.|++.|.|+.-+-+.+..+.....
T Consensus       464 ~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~  508 (534)
T KOG3653|consen  464 DAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWE  508 (534)
T ss_pred             hhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCC
Confidence            111 11345679999999999999999999999988887766543

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.90  E-value=2.1e-24  Score=194.61  Aligned_cols=151  Identities=20%  Similarity=0.289  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCCC-C
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGRV-T   79 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~-~   79 (340)
                      .+.-.++.|+..|++|||+++ |+|||||.+|||++.+-.+||+|||++..+...   .+.+|++.|.|||++.+.++ +
T Consensus       155 ~~ar~~F~q~vsaveYcH~k~-ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~g  233 (596)
T KOG0586|consen  155 KEARAKFRQIVSAVEYCHSKN-IVHRDLKAENILLDENMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDG  233 (596)
T ss_pred             hhhhhhhHHHHHHHHHHhhcc-eeccccchhhcccccccceeeeccccceeecccccccccCCCCCccChHhhcCcccCC
Confidence            455678999999999999999 999999999999999999999999999887754   56789999999999998876 6


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +.+|+||+|+++|-|+.|..||.+......+...+..      .-..+-..+.++.++|+++|..+|.+|++++++..+-
T Consensus       234 pe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~g------k~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~  307 (596)
T KOG0586|consen  234 PEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRG------KYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDR  307 (596)
T ss_pred             cceehhhhhhhheeeeecccccCCcccccccchheee------eecccceeechhHHHHHHhhccCccccCCHHHhhhhc
Confidence            7999999999999999999999776444333222111      1123445677899999999999999999999998875


Q ss_pred             Hh
Q 019475          160 MS  161 (340)
Q Consensus       160 ~~  161 (340)
                      +.
T Consensus       308 W~  309 (596)
T KOG0586|consen  308 WR  309 (596)
T ss_pred             cc
Confidence            54

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.90  E-value=9.8e-24  Score=176.33  Aligned_cols=156  Identities=21%  Similarity=0.242  Sum_probs=118.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC---eEEecccCcccCCCC-----------CCcccCCcc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN---PRLSSFGLMKNSRDG-----------KSYSTNLAF   67 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~---~kl~Dfg~~~~~~~~-----------~~~~~~~~y   67 (340)
                      +..+.-++..+|+.||.|||.+| |.||||||+|||-...++   ||||||.+.......           .+.+|+..|
T Consensus       174 ~E~EAs~vvkdia~aLdFlH~kg-IAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEf  252 (463)
T KOG0607|consen  174 NEREASRVVKDIASALDFLHTKG-IAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEF  252 (463)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcC-cccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhh
Confidence            45677889999999999999999 999999999999986664   699999776533211           234677889


Q ss_pred             CCccccc-----cCCCCCccchhhHHHHHHHHHhCCCCCCcchh-----------HHhhhhhhhHhhhccccCCCCc---
Q 019475           68 TPPEYMR-----TGRVTPESVVYSFGTMLLDLLSGKHIPPSHAL-----------DLIRSKNFLLLMDSALEGHFSN---  128 (340)
Q Consensus        68 ~aPE~~~-----~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~---  128 (340)
                      ||||+..     ...|+.++|.||||||+|-|++|.+||.+..-           ..-+...+..+-+..  -++|+   
T Consensus       253 MAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGk--YeFPdkdW  330 (463)
T KOG0607|consen  253 MAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGK--YEFPDKDW  330 (463)
T ss_pred             cchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccC--CcCChhhh
Confidence            9999764     23588999999999999999999999976421           111112222221111  12333   


Q ss_pred             -hhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          129 -DEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       129 -~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                       .++.+..++|...|..|+..|.++.++++|.+
T Consensus       331 ahIS~eakdlisnLlvrda~~rlsa~~vlnhPw  363 (463)
T KOG0607|consen  331 AHISSEAKDLISNLLVRDAKQRLSAAQVLNHPW  363 (463)
T ss_pred             HHhhHHHHHHHHHHHhccHHhhhhhhhccCCcc
Confidence             46888999999999999999999999988754

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.90  E-value=2.2e-24  Score=200.11  Aligned_cols=147  Identities=27%  Similarity=0.308  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC---C--CCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            6 RLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---D--GNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         6 ~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~---~--~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      .+.++.|++.||++||+-+ ||||||||.||||+.   +  ..++|+|||+|+....+.       ...||-+|+|||++
T Consensus       608 ~~~~l~q~~~GlaHLHsl~-iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L  686 (903)
T KOG1027|consen  608 PISVLSQIASGLAHLHSLK-IVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQL  686 (903)
T ss_pred             HHHHHHHHHHHHHHHHhcc-cccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHH
Confidence            4678899999999999998 999999999999986   3  368999999999876543       34679999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCC-CCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGK-HIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .....+.++||||+|||+|+.++|. .||... ...  ..++..-......-....++  +..+||.+|+..+|..||++
T Consensus       687 ~~~~~~~avDiFslGCvfyYvltgG~HpFGd~-~~R--~~NIl~~~~~L~~L~~~~d~--eA~dLI~~ml~~dP~~RPsa  761 (903)
T KOG1027|consen  687 REDRKTQAVDIFSLGCVFYYVLTGGSHPFGDS-LER--QANILTGNYTLVHLEPLPDC--EAKDLISRMLNPDPQLRPSA  761 (903)
T ss_pred             hccccCcccchhhcCceEEEEecCCccCCCch-HHh--hhhhhcCccceeeeccCchH--HHHHHHHHhcCCCcccCCCH
Confidence            9988889999999999999999985 455432 111  11111100000011111111  78999999999999999999


Q ss_pred             HHHHHH
Q 019475          153 KSLVIS  158 (340)
Q Consensus       153 ~e~l~~  158 (340)
                      .+|+.|
T Consensus       762 ~~VL~H  767 (903)
T KOG1027|consen  762 TDVLNH  767 (903)
T ss_pred             HHHhCC
Confidence            999987

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.89  E-value=5.1e-24  Score=188.28  Aligned_cols=156  Identities=19%  Similarity=0.203  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCC--CCcccCCccCCccccccCCCC
Q 019475            3 WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      ...+-.+++|+.-||..|..-| |+|.||||+|||++... .+||||||.+......  +.+..+..|.|||++.|-+|+
T Consensus       535 ikaVRsYaqQLflALklLK~c~-vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd  613 (752)
T KOG0670|consen  535 IKAVRSYAQQLFLALKLLKKCG-VLHADIKPDNILVNESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYD  613 (752)
T ss_pred             ehHHHHHHHHHHHHHHHHHhcC-eeecccCccceEeccCcceeeeccCccccccccccccHHHHHHhccCcceeecCccc
Confidence            3456679999999999999999 99999999999999764 5799999998766544  334567789999999999999


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhh----------------hhhhh-Hhhh-----------------------
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIR----------------SKNFL-LLMD-----------------------  119 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~----------------~~~~~-~~~~-----------------------  119 (340)
                      ...|+||+||++|||.||+..||+.....+-                .+.+. +.++                       
T Consensus       614 ~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~  693 (752)
T KOG0670|consen  614 YPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMV  693 (752)
T ss_pred             CCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEec
Confidence            9999999999999999999999886322110                00000 0000                       


Q ss_pred             ---c------ccc--CCCCc---hhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          120 ---S------ALE--GHFSN---DEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       120 ---~------~~~--~~~~~---~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                         +      .+.  ...+.   .....+.+|+.+||.+||++|.|..+.|.|.
T Consensus       694 ~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~Hp  747 (752)
T KOG0670|consen  694 NVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHP  747 (752)
T ss_pred             ccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCC
Confidence               0      000  01222   2346789999999999999999999999873

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.89  E-value=5.2e-23  Score=190.55  Aligned_cols=156  Identities=18%  Similarity=0.268  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcc------cCCccCCccccccCC
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYS------TNLAFTPPEYMRTGR   77 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~------~~~~y~aPE~~~~~~   77 (340)
                      +..+.|..||++||.|||+++ ++||||-.+||||..-.++|+.|||+++...+.....      ..+.|||-|.+...+
T Consensus       798 q~lLnw~~QIAkgM~YLe~qr-lVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~  876 (1177)
T KOG1025|consen  798 QDLLNWCYQIAKGMKYLEEQR-LVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRK  876 (1177)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-hhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccC
Confidence            467899999999999999999 9999999999999999999999999999877653321      246799999999999


Q ss_pred             CCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      ++.++|||||||++||++| |..|+.+.     ....+..++....+...|+.++-++..++.+||..|+..||++.++.
T Consensus       877 ~thqSDVWsfGVtiWElmTFGa~Py~gi-----~~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~  951 (1177)
T KOG1025|consen  877 YTHQSDVWSFGVTIWELMTFGAKPYDGI-----PAEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELA  951 (1177)
T ss_pred             CCchhhhhhhhhhHHHHHhcCCCccCCC-----CHHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHH
Confidence            9999999999999999998 56666554     33445555555556667888999999999999999999999999999


Q ss_pred             HHHHhhhhh
Q 019475          157 ISLMSLQKE  165 (340)
Q Consensus       157 ~~l~~~~~~  165 (340)
                      ..+.++.+.
T Consensus       952 ~~fs~~ard  960 (1177)
T KOG1025|consen  952 EEFSRMARD  960 (1177)
T ss_pred             HHHHHHhcC
Confidence            888776554

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=5e-23  Score=179.02  Aligned_cols=155  Identities=19%  Similarity=0.288  Sum_probs=117.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEcC---CCCeEEecccCcccCCCCC-----------CcccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRDGK-----------SYSTNL   65 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~~---~~~~kl~Dfg~~~~~~~~~-----------~~~~~~   65 (340)
                      ++.++.-.|+.||+.||.||.+.. +|||-||||.|||+..   .|.+||+|||+++.....+           ...||.
T Consensus       565 mSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTY  644 (775)
T KOG1151|consen  565 MSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTY  644 (775)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCcee
Confidence            466788999999999999999875 5999999999999954   4789999999999765432           235799


Q ss_pred             ccCCccccccC----CCCCccchhhHHHHHHHHHhCCCCCCcchhH--HhhhhhhhHhhhccccCCCCchhHHHHHHHHH
Q 019475           66 AFTPPEYMRTG----RVTPESVVYSFGTMLLDLLSGKHIPPSHALD--LIRSKNFLLLMDSALEGHFSNDEGTELVRLAS  139 (340)
Q Consensus        66 ~y~aPE~~~~~----~~~~~~Di~slG~~~~el~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  139 (340)
                      +|.|||.+.-+    +++.++||||+|||+|..+.|+.||...-..  ......+....  ...-+..+-.+.+..+||+
T Consensus       645 WYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAt--EVqFP~KPvVsseAkaFIR  722 (775)
T KOG1151|consen  645 WYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKAT--EVQFPPKPVVSSEAKAFIR  722 (775)
T ss_pred             eecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcce--eccCCCCCccCHHHHHHHH
Confidence            99999988644    4688999999999999999999998653211  11111111111  1111222345778999999


Q ss_pred             HhcccCCCCCCCHHHHHH
Q 019475          140 RCLQSEARERPNAKSLVI  157 (340)
Q Consensus       140 ~cl~~~p~~Rps~~e~l~  157 (340)
                      +||++.-++|....++..
T Consensus       723 RCLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  723 RCLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             HHHHhhhhhhhhHHHHcc
Confidence            999999999998887754

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.89  E-value=1.1e-22  Score=188.35  Aligned_cols=157  Identities=13%  Similarity=0.140  Sum_probs=112.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCccccccC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~~   76 (340)
                      +|..+..++.|++.||.|||+++ |+||||||+|||++.++.+||+|||++.......     ...+++.|++||.+...
T Consensus       307 ~~~~~~~i~~ql~~aL~~lH~~~-ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~  385 (507)
T PLN03224        307 DINVIKGVMRQVLTGLRKLHRIG-IVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMP  385 (507)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-eecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCC
Confidence            57788899999999999999999 9999999999999999999999999987543321     12347899999987643


Q ss_pred             CC----------------------CCccchhhHHHHHHHHHhCCC-CCCcc--hhHHhhh-h----hhhHhhhccccCCC
Q 019475           77 RV----------------------TPESVVYSFGTMLLDLLSGKH-IPPSH--ALDLIRS-K----NFLLLMDSALEGHF  126 (340)
Q Consensus        77 ~~----------------------~~~~Di~slG~~~~el~~g~~-~~~~~--~~~~~~~-~----~~~~~~~~~~~~~~  126 (340)
                      ..                      ..+.||||+||++++|++|.. |+...  ....... .    .+.........-..
T Consensus       386 ~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~  465 (507)
T PLN03224        386 QSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSL  465 (507)
T ss_pred             CCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCccc
Confidence            21                      124799999999999999875 43221  0000000 0    00111111111112


Q ss_pred             CchhHHHHHHHHHHhcccCC---CCCCCHHHHHHHH
Q 019475          127 SNDEGTELVRLASRCLQSEA---RERPNAKSLVISL  159 (340)
Q Consensus       127 ~~~~~~~~~~li~~cl~~~p---~~Rps~~e~l~~l  159 (340)
                      .+..+...++|+.+||..+|   .+|+|+.|++.|.
T Consensus       466 ~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp  501 (507)
T PLN03224        466 LDRNKEAGWDLACKLITKRDQANRGRLSVGQALSHR  501 (507)
T ss_pred             ccccChHHHHHHHHHhccCCCCcccCCCHHHHhCCC
Confidence            23456789999999999866   6899999999884

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.89  E-value=6.3e-23  Score=198.94  Aligned_cols=94  Identities=13%  Similarity=0.155  Sum_probs=71.1

Q ss_pred             cCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc-cCCCCchhHHHHHHHHHHh
Q 019475           63 TNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL-EGHFSNDEGTELVRLASRC  141 (340)
Q Consensus        63 ~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~c  141 (340)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||........    +..++.... ........+..+.+++.+|
T Consensus       542 GT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~~~----~~~il~~~~~~p~~~~~~~~~~~~~l~~l  617 (669)
T cd05610         542 GTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQV----FQNILNRDIPWPEGEEKLSVNAQNAIEIL  617 (669)
T ss_pred             eCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHH----HHHHHhcCCCCCcccccCCHHHHHHHHHH
Confidence            47789999999998999999999999999999999999876532221    112221111 1111224567789999999


Q ss_pred             cccCCCCCCCHHHHHHHHH
Q 019475          142 LQSEARERPNAKSLVISLM  160 (340)
Q Consensus       142 l~~~p~~Rps~~e~l~~l~  160 (340)
                      |..||.+||++.++++|.+
T Consensus       618 L~~dP~~R~ta~e~l~h~~  636 (669)
T cd05610         618 LTMDPTKRAGLKELKQHPL  636 (669)
T ss_pred             cccChhHCcCHHHHHhCHh
Confidence            9999999999999999854

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.89  E-value=4e-24  Score=189.31  Aligned_cols=149  Identities=19%  Similarity=0.229  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC---CCeEEecccCcccCCCC---CCcccCCccCCccccccCCC
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD---GNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~~   78 (340)
                      ...-++.||+.||.|||-++ |+|+||||+|||+...   -++||||||+++..++.   .+.+||+.|.|||+++...|
T Consensus       665 ~TkFlvtQIL~ALr~LH~kn-IvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkGy  743 (888)
T KOG4236|consen  665 ITKFLVTQILVALRYLHFKN-IVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGY  743 (888)
T ss_pred             HHHHHHHHHHHHHHHhhhcc-eeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcCCccccCHHHHhhccc
Confidence            33457899999999999999 9999999999999754   47999999999988765   56789999999999999999


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcch--hHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHA--LDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      +..-|+||+|||+|--++|..||-.+.  .+.+++..+      .+......+++....+||...|+..-++|-|.+..+
T Consensus       744 NrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaF------MyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~l  817 (888)
T KOG4236|consen  744 NRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAF------MYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSL  817 (888)
T ss_pred             cccccceeeeEEEEEEecccccCCCccchhHHhhcccc------ccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhc
Confidence            999999999999999999997765431  111211111      122233346778899999999999999999999988


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      .|.+
T Consensus       818 sh~W  821 (888)
T KOG4236|consen  818 SHPW  821 (888)
T ss_pred             cchh
Confidence            7754

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=4.9e-23  Score=173.38  Aligned_cols=147  Identities=15%  Similarity=0.320  Sum_probs=116.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----CCCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~   76 (340)
                      ||.+..--+..+|+-||.|||+.| ||.||||.+|+|++..|++||+|+|+++..-    .+++.+||+.|.|||+++|.
T Consensus       348 lpeeharfys~ei~lal~flh~rg-iiyrdlkldnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrge  426 (593)
T KOG0695|consen  348 LPEEHARFYSAEICLALNFLHERG-IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGE  426 (593)
T ss_pred             CcHHHhhhhhHHHHHHHHHHhhcC-eeeeeccccceEEccCCceeecccchhhcCCCCCcccccccCCCcccchhhhccc
Confidence            456666678889999999999999 9999999999999999999999999998532    33577899999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh----hhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS----KNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      .|+.+.|.|+|||+++||+.|+.||.--..+....    ..+.-+++..+  ..|...+-....+++..|.+||.+|.
T Consensus       427 eygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqi--riprslsvkas~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  427 EYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQI--RIPRSLSVKASHVLKGFLNKDPKERL  502 (593)
T ss_pred             ccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcc--cccceeehhhHHHHHHhhcCCcHHhc
Confidence            99999999999999999999999985432221111    11222222222  23444555677788999999999994

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.88  E-value=3.4e-23  Score=193.21  Aligned_cols=154  Identities=13%  Similarity=0.217  Sum_probs=123.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      |.|+...-|++.++.|+.+||.+. +||||||..|||++.+|.||++|||++.....+    .+.+||+.|||||++...
T Consensus       120 l~E~~IaYI~re~lrgl~HLH~nk-viHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~  198 (953)
T KOG0587|consen  120 LKEEWIAYILREILRGLAHLHNNK-VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACD  198 (953)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcc-eeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecc
Confidence            467888899999999999999999 999999999999999999999999998865543    677899999999999743


Q ss_pred             -----CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh-hccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           77 -----RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM-DSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        77 -----~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                           .|+..+|+||||++..||-.|.+|+..-    .....+..+. ++......|..-++++.++|..||..|..+||
T Consensus       199 e~~d~tyd~R~D~WsLGITaIEladG~PPl~Dm----HPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP  274 (953)
T KOG0587|consen  199 ESPDATYDYRSDLWSLGITAIEMAEGAPPLCDM----HPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRP  274 (953)
T ss_pred             cCCCCCcccccchhhccceeehhcCCCCCccCc----chhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCc
Confidence                 3677999999999999999999776431    1111111111 11111223556788999999999999999999


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      ++.++++|.
T Consensus       275 ~~~~ll~hp  283 (953)
T KOG0587|consen  275 STEELLKHP  283 (953)
T ss_pred             chhhhccCC
Confidence            999998773

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.1e-22  Score=183.83  Aligned_cols=146  Identities=21%  Similarity=0.239  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------------------
Q 019475            7 LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------------------   58 (340)
Q Consensus         7 ~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------------------   58 (340)
                      --++.++.+|+++.|..| +|||||||+|||||.+|++||+|||+|..+.-+                            
T Consensus       732 RFYIAEltcAiesVHkmG-FIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~  810 (1034)
T KOG0608|consen  732 RFYIAELTCAIESVHKMG-FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISK  810 (1034)
T ss_pred             HHHHHHHHHHHHHHHhcc-ceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccc
Confidence            346789999999999999 999999999999999999999999998743200                            


Q ss_pred             ------------------CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh--hhhhhhHhh
Q 019475           59 ------------------KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI--RSKNFLLLM  118 (340)
Q Consensus        59 ------------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~--~~~~~~~~~  118 (340)
                                        .+.+||..|+|||++....++..+|.||.|||+|||+.|++||........  +...+...+
T Consensus       811 ~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~~~l  890 (1034)
T KOG0608|consen  811 CLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINWRNFL  890 (1034)
T ss_pred             cchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeehhhcc
Confidence                              023579999999999999999999999999999999999999865432211  111122222


Q ss_pred             hccccCCCCchhHHHHHHHHHHhcccCCCCCC---CHHHHHHH
Q 019475          119 DSALEGHFSNDEGTELVRLASRCLQSEARERP---NAKSLVIS  158 (340)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp---s~~e~l~~  158 (340)
                          .-.....+++++.++|.+++. +++.|.   .+++|..|
T Consensus       891 ----~~~~~~~ls~e~~~li~kLc~-sad~RLGkng~d~vKaH  928 (1034)
T KOG0608|consen  891 ----HIPYQGNLSKEALDLIQKLCC-SADSRLGKNGADQVKAH  928 (1034)
T ss_pred             ----ccccccccCHHHHHHHHHHhc-ChhhhhcccchhhhhcC
Confidence                222233556778888876442 455664   34445544

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=1.6e-22  Score=177.61  Aligned_cols=99  Identities=15%  Similarity=0.228  Sum_probs=72.5

Q ss_pred             ccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh-----------------------hhhhhHhh
Q 019475           62 STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR-----------------------SKNFLLLM  118 (340)
Q Consensus        62 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~-----------------------~~~~~~~~  118 (340)
                      +.|..|++||++.|.+|++.+||||++|++|||.||...|..+.-....                       ...-...+
T Consensus       412 IQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdFF  491 (590)
T KOG1290|consen  412 IQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIALGGKYSRDFF  491 (590)
T ss_pred             hhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHhcCcchHhhh
Confidence            4478899999999999999999999999999999999877553111000                       00001111


Q ss_pred             hcc-----------------c--cCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          119 DSA-----------------L--EGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       119 ~~~-----------------~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      +..                 +  .-.++.+...++.+|+.-||+.+|++|||+.++++|.+
T Consensus       492 nr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~hPw  552 (590)
T KOG1290|consen  492 NRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLKHPW  552 (590)
T ss_pred             ccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhcCcc
Confidence            100                 0  11356677889999999999999999999999998843

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.87  E-value=2.4e-22  Score=184.05  Aligned_cols=103  Identities=22%  Similarity=0.306  Sum_probs=91.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc--CCCC--eEEecccCcccCCCC---CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD--KDGN--PRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~--~~~~--~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~   73 (340)
                      |+..+.+.++.+++.||.|||++| |+||||||.||++-  .+|+  -||+|||.++...+.   .+.+||..|.+||+.
T Consensus       117 LpE~e~l~lL~d~~~al~~LrEn~-IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~  195 (732)
T KOG4250|consen  117 LPESEFLDLLSDLVSALRHLRENG-IVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELY  195 (732)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-ceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhhcChHHH
Confidence            577889999999999999999999 99999999999984  3343  599999999988766   466899999999999


Q ss_pred             c-cCCCCCccchhhHHHHHHHHHhCCCCCCcc
Q 019475           74 R-TGRVTPESVVYSFGTMLLDLLSGKHIPPSH  104 (340)
Q Consensus        74 ~-~~~~~~~~Di~slG~~~~el~~g~~~~~~~  104 (340)
                      . ...|+..+|.|||||++|+..||..||-..
T Consensus       196 E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~  227 (732)
T KOG4250|consen  196 ERQKKYTATVDLWSFGVTLYECATGELPFIPF  227 (732)
T ss_pred             hhccCcCceeehhhhhhHHHHHhccCCCCCcC
Confidence            8 488999999999999999999999988543

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.87  E-value=5.3e-22  Score=158.82  Aligned_cols=155  Identities=21%  Similarity=0.243  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-CCeEEecccCcccCCCCCCc---ccCCccCCccccccC-CC
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-GNPRLSSFGLMKNSRDGKSY---STNLAFTPPEYMRTG-RV   78 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-~~~kl~Dfg~~~~~~~~~~~---~~~~~y~aPE~~~~~-~~   78 (340)
                      ....-++.+++.||.|||++| |+|||+||.|++++.. -.++|+|+|++..++++...   +.+..|--||.+..- .|
T Consensus       132 ~dIryY~~elLkALdyCHS~G-ImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~Y  210 (338)
T KOG0668|consen  132 YDIRYYIYELLKALDYCHSMG-IMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMY  210 (338)
T ss_pred             hhHHHHHHHHHHHHhHHHhcC-cccccCCcceeeechhhceeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhc
Confidence            345568899999999999999 9999999999999965 46899999999998887543   456778889988754 47


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhH--Hh-------hh---------------hhhhHhhhccccCC--------C
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALD--LI-------RS---------------KNFLLLMDSALEGH--------F  126 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~--~~-------~~---------------~~~~~~~~~~~~~~--------~  126 (340)
                      +.+-|+|||||++..|+..+.||+-....  ..       ..               ..+..++....+..        .
T Consensus       211 DYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n  290 (338)
T KOG0668|consen  211 DYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSEN  290 (338)
T ss_pred             cccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccc
Confidence            88999999999999999999887543100  00       00               01111111111111        1


Q ss_pred             CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          127 SNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       127 ~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ..-.+++..+|+.+.|.+|-.+|+|+.|.+.|.
T Consensus       291 ~hl~~peaiDlldklLrYDHqeRlTakEam~Hp  323 (338)
T KOG0668|consen  291 QHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHP  323 (338)
T ss_pred             cccCChHHHHHHHHHHhhccccccchHHHhcCc
Confidence            111347899999999999999999999998873

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=2e-21  Score=169.03  Aligned_cols=165  Identities=17%  Similarity=0.218  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-----C--CceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-----G--RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNL   65 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-----~--~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~   65 (340)
                      ++.+..++++..++.||++||..     |  .|.|||||+.||||..+|++-|+|+|++......        +..+||.
T Consensus       305 v~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTK  384 (513)
T KOG2052|consen  305 VTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTK  384 (513)
T ss_pred             CCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCcccee
Confidence            45678899999999999999953     2  3999999999999999999999999999865543        3457999


Q ss_pred             ccCCccccccCC------CCCccchhhHHHHHHHHHhCC----------CCCCcch-----hHHhhhhhhhHhhhcccc-
Q 019475           66 AFTPPEYMRTGR------VTPESVVYSFGTMLLDLLSGK----------HIPPSHA-----LDLIRSKNFLLLMDSALE-  123 (340)
Q Consensus        66 ~y~aPE~~~~~~------~~~~~Di~slG~~~~el~~g~----------~~~~~~~-----~~~~~~~~~~~~~~~~~~-  123 (340)
                      .|||||++...-      .-..+||||||.|+||+..+.          .||.+.-     ...+..-...+.+.+.+. 
T Consensus       385 RYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipn  464 (513)
T KOG2052|consen  385 RYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPN  464 (513)
T ss_pred             eccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCc
Confidence            999999996432      123699999999999986532          3444321     112222222222222222 


Q ss_pred             CCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhhh
Q 019475          124 GHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       124 ~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  165 (340)
                      .+........+.++|+.||..+|..|.|+-.+.+.|.++.+.
T Consensus       465 rW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~  506 (513)
T KOG2052|consen  465 RWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNS  506 (513)
T ss_pred             ccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcC
Confidence            223445678899999999999999999999999998887753

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.83  E-value=1.6e-20  Score=156.27  Aligned_cols=121  Identities=31%  Similarity=0.495  Sum_probs=108.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-CCCeEEecccCcccCCCC----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~   75 (340)
                      +++..+..++.+++.+|.+||+++ ++|+||+|.||+++. ++.++|+|||.+......    ....+...|++||.+..
T Consensus        89 ~~~~~~~~~~~~l~~~l~~lh~~~-~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~  167 (215)
T cd00180          89 LSEDEILRILLQILEGLEYLHSNG-IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLG  167 (215)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcc
Confidence            467889999999999999999999 999999999999999 899999999998866543    23456788999999987


Q ss_pred             C-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 G-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      . ..+.++|+|++|++++++                                     ..+.+++..|+..+|++||++.+
T Consensus       168 ~~~~~~~~D~~~lg~~~~~l-------------------------------------~~~~~~l~~~l~~~p~~R~~~~~  210 (215)
T cd00180         168 KGYYSEKSDIWSLGVILYEL-------------------------------------PELKDLIRKMLQKDPEKRPSAKE  210 (215)
T ss_pred             cCCCCchhhhHHHHHHHHHH-------------------------------------HHHHHHHHHHhhCCcccCcCHHH
Confidence            7 788999999999999998                                     46889999999999999999999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      ++.++
T Consensus       211 l~~~~  215 (215)
T cd00180         211 ILEHL  215 (215)
T ss_pred             HhhCC
Confidence            98753

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.83  E-value=7.7e-21  Score=155.76  Aligned_cols=157  Identities=22%  Similarity=0.214  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc--CCCCeEEecccCcccCCCCCCcc-cCCccCCccccccC-----
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD--KDGNPRLSSFGLMKNSRDGKSYS-TNLAFTPPEYMRTG-----   76 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~--~~~~~kl~Dfg~~~~~~~~~~~~-~~~~y~aPE~~~~~-----   76 (340)
                      -..+++.|+++||.|+|+++ +||||||.+||||-  +...|||||||..+..+.....+ -+..|.+||.+...     
T Consensus       122 ~~K~v~~ql~SAi~fMHskn-lVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~  200 (378)
T KOG1345|consen  122 NTKKVFAQLLSAIEFMHSKN-LVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKL  200 (378)
T ss_pred             HHHHHHHHHHHHHHHhhccc-hhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCCcHHHhhccccce
Confidence            34678999999999999999 99999999999984  33479999999988766553332 36679999977532     


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh---hccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM---DSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ...+.+|||.||+++|.++||..|+.-........-.+.+..   ....+.. -...++.+..+.++-|..++++|-...
T Consensus       201 ~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~-F~~fs~~a~r~Fkk~lt~~~~drcki~  279 (378)
T KOG1345|consen  201 VVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKK-FNPFSEKALRLFKKSLTPRFKDRCKIW  279 (378)
T ss_pred             EecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchh-hcccCHHHHHHHHHhcCCcccccchhH
Confidence            247789999999999999999987653222111111111111   1111111 123456788899999999999996666


Q ss_pred             HHHHHHHhhh
Q 019475          154 SLVISLMSLQ  163 (340)
Q Consensus       154 e~l~~l~~~~  163 (340)
                      ++..+-...+
T Consensus       280 ~~kk~rk~~w  289 (378)
T KOG1345|consen  280 TAKKMRKCLW  289 (378)
T ss_pred             HHHHHHHHHH
Confidence            6555444333

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.80  E-value=7e-20  Score=158.67  Aligned_cols=157  Identities=24%  Similarity=0.283  Sum_probs=113.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-CCeEEecccCcccCC-----------------C--C--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-GNPRLSSFGLMKNSR-----------------D--G--   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-~~~kl~Dfg~~~~~~-----------------~--~--   58 (340)
                      ++..+...++..++.||.++|.+| ||||||||+|+|.+.. +.-.|+|||++....                 +  +  
T Consensus       129 l~~~~i~~Yl~~ll~Al~~~h~~G-IvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~  207 (418)
T KOG1167|consen  129 LSLAEIRWYLRNLLKALAHLHKNG-IVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKD  207 (418)
T ss_pred             CCHHHHHHHHHHHHHHhhhhhccC-ccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCc
Confidence            356678889999999999999999 9999999999999855 566899999987110                 0  0  


Q ss_pred             ---------------------------CCcccCCccCCccccccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHH--
Q 019475           59 ---------------------------KSYSTNLAFTPPEYMRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDL--  108 (340)
Q Consensus        59 ---------------------------~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~--  108 (340)
                                                 ....||++|+|||++... ..++++||||.|+|+..+++++.||.....+.  
T Consensus       208 ~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~a  287 (418)
T KOG1167|consen  208 VHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADA  287 (418)
T ss_pred             ccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCccccch
Confidence                                       012478999999998754 47889999999999999999998875421000  


Q ss_pred             ------------hhh------h-----------------hhhHh-hhcccc--------CCCCchhHHHHHHHHHHhccc
Q 019475          109 ------------IRS------K-----------------NFLLL-MDSALE--------GHFSNDEGTELVRLASRCLQS  144 (340)
Q Consensus       109 ------------~~~------~-----------------~~~~~-~~~~~~--------~~~~~~~~~~~~~li~~cl~~  144 (340)
                                  +..      .                 .+..+ ......        ....+..+..+.+|+.+|+..
T Consensus       288 l~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~  367 (418)
T KOG1167|consen  288 LAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLEL  367 (418)
T ss_pred             HHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccC
Confidence                        000      0                 00000 000000        011122345789999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 019475          145 EARERPNAKSLVIS  158 (340)
Q Consensus       145 ~p~~Rps~~e~l~~  158 (340)
                      +|.+|.|+++.|.|
T Consensus       368 np~kRitAEeALkH  381 (418)
T KOG1167|consen  368 NPQKRITAEDALKH  381 (418)
T ss_pred             ChhhcccHHHHhcC
Confidence            99999999999987

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=2.9e-19  Score=169.25  Aligned_cols=153  Identities=16%  Similarity=0.120  Sum_probs=116.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCcccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~   73 (340)
                      +..++-.++.|++.|++|+|+.| +.|||||++|+++..+|.+||+|||.+..+.-.        ...+|+..|+|||++
T Consensus       418 ~~~e~~c~fKqL~~Gv~y~h~~G-iahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~  496 (601)
T KOG0590|consen  418 TPLEADCFFKQLLRGVKYLHSMG-LAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVL  496 (601)
T ss_pred             chhhhhHHHHHHHHHHHHHHhcC-ceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccc
Confidence            44567789999999999999999 999999999999999999999999998754422        234678899999999


Q ss_pred             ccCCCCC-ccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc------cCCCCchhHHHHHHHHHHhcccCC
Q 019475           74 RTGRVTP-ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL------EGHFSNDEGTELVRLASRCLQSEA  146 (340)
Q Consensus        74 ~~~~~~~-~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~li~~cl~~~p  146 (340)
                      .+..|.+ ..||||.|+++..|++|+.||.-......   .+........      ........+...+.+|.+||+.+|
T Consensus       497 ~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P  573 (601)
T KOG0590|consen  497 TGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDN---SFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDP  573 (601)
T ss_pred             cccccCcchhhhhhccceEEEEecCCCcccccccccc---chhhhccccccccccChHHHHHhchhhHHHHHHHHccCCh
Confidence            9999876 68999999999999999866533211100   0000000000      001122456788999999999999


Q ss_pred             CCCCCHHHHHHH
Q 019475          147 RERPNAKSLVIS  158 (340)
Q Consensus       147 ~~Rps~~e~l~~  158 (340)
                      .+|.|+++|++.
T Consensus       574 ~~R~ti~~i~~d  585 (601)
T KOG0590|consen  574 TKRITIEQILND  585 (601)
T ss_pred             hheecHHHHhhC
Confidence            999999999874

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.3e-18  Score=154.68  Aligned_cols=105  Identities=23%  Similarity=0.378  Sum_probs=100.7

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      ..+...+.+|+.+|+.|+|..|+..|++||..+|+ ++.+|.|||.||.++|++..|+.||+++++++|++.++|++.|.
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~  434 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA  434 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            33667788899999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhhccccccc
Q 019475          313 CLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ++..+.+|+.|++.|++++++||+..
T Consensus       435 al~~mk~ydkAleay~eale~dp~~~  460 (539)
T KOG0548|consen  435 ALRAMKEYDKALEAYQEALELDPSNA  460 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhH
Confidence            99999999999999999999999853

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.76  E-value=7.2e-19  Score=160.11  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=117.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccc---
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMR---   74 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~---   74 (340)
                      +.-+.-.+.++.+.||+|||++| -+|||||..|||+++.|.+|++|||.+-.+..    ..+.+||+.||+||+-.   
T Consensus       110 selqiayvcRetl~gl~ylhs~g-k~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaver  188 (829)
T KOG0576|consen  110 SELQIAYVCRETLQGLKYLHSQG-KIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVER  188 (829)
T ss_pred             hhHHHHHHHhhhhccchhhhcCC-cccccccccceeecccCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHh
Confidence            33456667889999999999999 89999999999999999999999999876553    46789999999999864   


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc---CCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE---GHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+.|...+|||++|+...|+-.-++|.... .   ......-+....+.   ..-+..-.+.+.+|++.||..+|.+||+
T Consensus       189 kggynqlcdiwa~gitAiel~eLqpplfdl-h---pmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRpt  264 (829)
T KOG0576|consen  189 KGGYNQLCDIWALGITAIELGELQPPLFDL-H---PMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPT  264 (829)
T ss_pred             cccccccccccccccchhhhhhcCCccccc-c---hHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCC
Confidence            567899999999999999997777553221 1   11111111111111   1223355678999999999999999999


Q ss_pred             HHHHHHH
Q 019475          152 AKSLVIS  158 (340)
Q Consensus       152 ~~e~l~~  158 (340)
                      ++.+++|
T Consensus       265 aeklL~h  271 (829)
T KOG0576|consen  265 AEKLLQH  271 (829)
T ss_pred             hhhheec
Confidence            9999875

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=4e-18  Score=133.53  Aligned_cols=108  Identities=18%  Similarity=0.255  Sum_probs=102.0

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC----ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA  306 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a  306 (340)
                      ....+..++..||.+|++|+|.+|...|..||++.|..    ...+|.|||.|.+++++++.||.+|.+||+|+|.+.+|
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA  170 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA  170 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence            45678899999999999999999999999999999972    45789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          307 LYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       307 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +.+++.+|.++.+|++|+++|++.+++||+..
T Consensus       171 l~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  171 LERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence            99999999999999999999999999999864

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.75  E-value=9.8e-19  Score=149.39  Aligned_cols=134  Identities=20%  Similarity=0.214  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCC-cccCCccCCcccccc--------
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS-YSTNLAFTPPEYMRT--------   75 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~y~aPE~~~~--------   75 (340)
                      -++.+-.|++..+++||+.| ++|+||+|+|++++.+|.+.|+||+.....+.... ...+..|.|||....        
T Consensus       146 arl~lT~Q~I~lvA~Lh~~G-lVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~  224 (288)
T PF14531_consen  146 ARLSLTVQMIRLVANLHSYG-LVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNN  224 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-EEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSE
T ss_pred             HHHHHHHHHHHHHHHHhhcc-eEecccceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCccc
Confidence            45677789999999999999 99999999999999999999999998776554433 344577999997743        


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                      ..++.+.|.|+||+++|.|+++..||...........         ....+. +.++.++.||..+|+.+|.+|
T Consensus       225 ~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~~---------~f~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  225 APYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPEW---------DFSRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             EEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSGG---------GGTTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             ceeeeccCHHHHHHHHHHHHHccCCCCCCCccccccc---------cchhcC-CcCHHHHHHHHHHccCCcccC
Confidence            2468899999999999999999988765422111111         112333 778899999999999999988

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.75  E-value=5.1e-19  Score=158.69  Aligned_cols=101  Identities=12%  Similarity=0.232  Sum_probs=90.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC--CCCCcccCCccCCccccccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR--DGKSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~--~~~~~~~~~~y~aPE~~~~~~~   78 (340)
                      |+..+..-|++||+.|+++||+.| |||||||-+|+.++.+|-+||+|||.+....  +-...+||..|.|||++.|.+|
T Consensus       667 m~E~eAk~IFkQV~agi~hlh~~~-ivhrdikdenvivd~~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y  745 (772)
T KOG1152|consen  667 MDEPEAKLIFKQVVAGIKHLHDQG-IVHRDIKDENVIVDSNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKY  745 (772)
T ss_pred             cchHHHHHHHHHHHhccccccccC-ceecccccccEEEecCCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCcc
Confidence            356678889999999999999999 9999999999999999999999999987554  4467899999999999999887


Q ss_pred             -CCccchhhHHHHHHHHHhCCCCCC
Q 019475           79 -TPESVVYSFGTMLLDLLSGKHIPP  102 (340)
Q Consensus        79 -~~~~Di~slG~~~~el~~g~~~~~  102 (340)
                       +..-|||++|+++|.++....|++
T Consensus       746 ~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  746 LGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             CCCcchhhhhhheeeEEEeccCCCc
Confidence             557899999999999999888875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=3.8e-18  Score=151.78  Aligned_cols=103  Identities=27%  Similarity=0.445  Sum_probs=99.5

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +..++.+||.+|..|+|+.|+..|++||.++|. |..+|.||+.+|..+|+|++|+.|..++++++|+++++|.++|.++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~   80 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL   80 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence            456789999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ..+|+|++|+..|.++|+.||+..
T Consensus        81 ~~lg~~~eA~~ay~~GL~~d~~n~  104 (539)
T KOG0548|consen   81 FGLGDYEEAILAYSEGLEKDPSNK  104 (539)
T ss_pred             HhcccHHHHHHHHHHHhhcCCchH
Confidence            999999999999999999999843

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.74  E-value=6.9e-18  Score=142.20  Aligned_cols=102  Identities=25%  Similarity=0.306  Sum_probs=90.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccc-c
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYM-R   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~-~   74 (340)
                      +++..+..++.+++.++.+||+++ ++|+||+|.||+++.++.++|+|||.+......     ....++..|++||.+ .
T Consensus        95 ~~~~~~~~~~~~l~~~l~~lh~~~-i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~  173 (225)
T smart00221       95 LSEEEARFYLRQILEALEYLHSLG-IVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLG  173 (225)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcC
Confidence            467788999999999999999998 999999999999999999999999998876544     344667889999998 6


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCc
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPS  103 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~  103 (340)
                      ...++.++|+|+||+++++|++|+.||..
T Consensus       174 ~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      174 GKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            66778899999999999999999998865

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.73  E-value=6.5e-18  Score=142.66  Aligned_cols=106  Identities=25%  Similarity=0.307  Sum_probs=101.1

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ...+..++++||.+|++|+|++||.||+++|..+|. |++.|.|||.+|+++++|..|..||+.|+.|+-.+.+||-++|
T Consensus        94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~  172 (536)
T KOG4648|consen   94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM  172 (536)
T ss_pred             HHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            344556899999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhccccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .+...+|+.+||.++|+.+|+|+|+..
T Consensus       173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  173 QARESLGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence            999999999999999999999999843

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.72  E-value=5.1e-17  Score=126.93  Aligned_cols=100  Identities=16%  Similarity=0.205  Sum_probs=96.8

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhc
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  317 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~  317 (340)
                      +..+|..+++.|+|++|+..|++++.++|. ++.+|+++|.++..+|++++|+..|++|++++|+++.+++++|.++..+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            556799999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhccccccc
Q 019475          318 GMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       318 ~~~~~A~~~~~~al~l~~~~~  338 (340)
                      |++++|+..|++|++++|.+.
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=1.8e-17  Score=158.79  Aligned_cols=150  Identities=19%  Similarity=0.232  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC-C-C---------CCcccCCccCCccc
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR-D-G---------KSYSTNLAFTPPEY   72 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~-~-~---------~~~~~~~~y~aPE~   72 (340)
                      -+..=|+.|++.||..+|..| |+|||||.+||||+.=+.+.|+||...++.- + .         .+...-.+|.|||.
T Consensus       120 iEKkWiaFQLL~al~qcH~~g-VcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPER  198 (1431)
T KOG1240|consen  120 IEKKWIAFQLLKALSQCHKLG-VCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPER  198 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC-ccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHh
Confidence            355568999999999999999 9999999999999999999999998766421 1 1         12233468999998


Q ss_pred             cccC----------C-CCCccchhhHHHHHHHHHhC-CCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHH
Q 019475           73 MRTG----------R-VTPESVVYSFGTMLLDLLSG-KHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASR  140 (340)
Q Consensus        73 ~~~~----------~-~~~~~Di~slG~~~~el~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  140 (340)
                      +...          . .+++.||||+||++.||++- +++|.-.-.-..+...  ............   ...++++|..
T Consensus       199 Fv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~--~~~~e~~Le~Ie---d~~~Rnlil~  273 (1431)
T KOG1240|consen  199 FVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGN--ADDPEQLLEKIE---DVSLRNLILS  273 (1431)
T ss_pred             hhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccC--ccCHHHHHHhCc---CccHHHHHHH
Confidence            8541          1 57889999999999999885 5555332111111110  000000001111   1358999999


Q ss_pred             hcccCCCCCCCHHHHHHHH
Q 019475          141 CLQSEARERPNAKSLVISL  159 (340)
Q Consensus       141 cl~~~p~~Rps~~e~l~~l  159 (340)
                      |++.||++|.++++.|+.-
T Consensus       274 Mi~rdPs~RlSAedyL~~y  292 (1431)
T KOG1240|consen  274 MIQRDPSKRLSAEDYLQKY  292 (1431)
T ss_pred             HHccCchhccCHHHHHHhh
Confidence            9999999999999999873

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.70  E-value=7.9e-17  Score=139.09  Aligned_cols=150  Identities=12%  Similarity=0.142  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc--CCC--CeEEecccCcccCCC----------CCCcccCCccC
Q 019475            3 WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD--KDG--NPRLSSFGLMKNSRD----------GKSYSTNLAFT   68 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~--~~~--~~kl~Dfg~~~~~~~----------~~~~~~~~~y~   68 (340)
                      ...+.-|+.|+++|+.|||.+| |.|||+|++|||+.  +++  .+.|+|||.+--...          ....-|.-.-|
T Consensus       340 ~r~~~~~laQlLEav~hL~~hg-vAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lm  418 (598)
T KOG4158|consen  340 YRTGRVILAQLLEAVTHLHKHG-VAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLM  418 (598)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcc-chhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceec
Confidence            4456678999999999999999 99999999999984  444  468999998653221          12234567789


Q ss_pred             CccccccCC------CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhc
Q 019475           69 PPEYMRTGR------VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCL  142 (340)
Q Consensus        69 aPE~~~~~~------~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  142 (340)
                      |||+....+      .-.++|.|+.|.+.||+++...||+....-........    .......|..+++.+.+++...|
T Consensus       419 APEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yq----e~qLPalp~~vpp~~rqlV~~lL  494 (598)
T KOG4158|consen  419 APEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQ----ESQLPALPSRVPPVARQLVFDLL  494 (598)
T ss_pred             chhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhh----hhhCCCCcccCChHHHHHHHHHh
Confidence            999986432      12489999999999999999999988543333222221    12223456677889999999999


Q ss_pred             ccCCCCCCCHHHHHH
Q 019475          143 QSEARERPNAKSLVI  157 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~  157 (340)
                      +.||++|++..=...
T Consensus       495 ~r~pskRvsp~iAAN  509 (598)
T KOG4158|consen  495 KRDPSKRVSPNIAAN  509 (598)
T ss_pred             cCCccccCCccHHHh
Confidence            999999988654433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.70  E-value=4.8e-17  Score=133.83  Aligned_cols=154  Identities=17%  Similarity=0.210  Sum_probs=120.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCceec-ccCCCCeEEcCCCCeEEe--cccCcccCCCCCCcccCCccCCccccccCCC-
Q 019475            3 WAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLS--SFGLMKNSRDGKSYSTNLAFTPPEYMRTGRV-   78 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH~~~~iih~-dlkp~Nil~~~~~~~kl~--Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~-   78 (340)
                      ..+.++++.+|+.|++|||+-.++|-| -|++..++++++.+.+|+  |-.++   .......-++.||+||.++..+- 
T Consensus       288 ~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfs---fqe~gr~y~pawmspealqrkped  364 (448)
T KOG0195|consen  288 HSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFS---FQEVGRAYSPAWMSPEALQRKPED  364 (448)
T ss_pred             cchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceee---eeccccccCcccCCHHHHhcCchh
Confidence            467899999999999999999877776 899999999999877664  43222   22222334689999999976543 


Q ss_pred             --CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           79 --TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        79 --~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                        -.++|+|||++++|||.|+..||.....-..    -.++.-+.++...|++.+..+.+|+.-|+..||.+||.++.++
T Consensus       365 ~n~raadmwsfaillwel~trevpfadlspmec----gmkialeglrv~ippgis~hm~klm~icmnedpgkrpkfdmiv  440 (448)
T KOG0195|consen  365 LNIRAADMWSFAILLWELNTREVPFADLSPMEC----GMKIALEGLRVHIPPGISRHMNKLMNICMNEDPGKRPKFDMIV  440 (448)
T ss_pred             cchhhhhHHHHHHHHHHhhccccccccCCchhh----hhhhhhccccccCCCCccHHHHHHHHHHhcCCCCcCCCcceeh
Confidence              3579999999999999999998866532211    1223334566778899999999999999999999999999999


Q ss_pred             HHHHhhh
Q 019475          157 ISLMSLQ  163 (340)
Q Consensus       157 ~~l~~~~  163 (340)
                      -.|+++.
T Consensus       441 pilekm~  447 (448)
T KOG0195|consen  441 PILEKMI  447 (448)
T ss_pred             hhHHHhc
Confidence            9888753

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=1.5e-17  Score=148.66  Aligned_cols=143  Identities=24%  Similarity=0.393  Sum_probs=105.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------CCcccCCccCCcc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------KSYSTNLAFTPPE   71 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------~~~~~~~~y~aPE   71 (340)
                      +|...+.++.|++.|+.|   ++ .+|+|+||.||++..+..+||.|||+.......          ...+||..||+||
T Consensus       357 s~s~~~~~~~q~~~~~~y---k~-~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPE  432 (516)
T KOG1033|consen  357 SLSLMLDIFKQIAPAVEY---KG-LIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPE  432 (516)
T ss_pred             chhHHHHHHHhhccchhh---cc-chhhhccccccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHH
Confidence            466788999999999999   77 999999999999999999999999997754432          2347899999999


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHhC-CCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           72 YMRTGRVTPESVVYSFGTMLLDLLSG-KHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        72 ~~~~~~~~~~~Di~slG~~~~el~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      .+.+..|+.++|||+||++++|+++- ...+       .....+..+-+..+.+.+..+. +.-..|+.+++...|.+||
T Consensus       433 Qi~g~~y~~kvdIyaLGlil~EL~~~f~T~~-------er~~t~~d~r~g~ip~~~~~d~-p~e~~ll~~lls~~p~~RP  504 (516)
T KOG1033|consen  433 QIRGQQYSEKVDIYALGLILAELLIQFSTQF-------ERIATLTDIRDGIIPPEFLQDY-PEEYTLLQQLLSPSPEERP  504 (516)
T ss_pred             HHhhhhhhhhcchhhHHHHHHHHHHHhccHH-------HHHHhhhhhhcCCCChHHhhcC-cHHHHHHHHhcCCCcccCc
Confidence            99999999999999999999999982 2111       1111111111111111111111 2345799999999999999


Q ss_pred             CHHHHH
Q 019475          151 NAKSLV  156 (340)
Q Consensus       151 s~~e~l  156 (340)
                      ++.+.-
T Consensus       505 ~~~~~~  510 (516)
T KOG1033|consen  505 SAIEVA  510 (516)
T ss_pred             hHHHHh
Confidence            665543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.69  E-value=1.4e-16  Score=142.96  Aligned_cols=100  Identities=26%  Similarity=0.341  Sum_probs=97.5

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  316 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  316 (340)
                      .+..+|+.++..|+|++|+..|++||+++|+ ++.+|++||.+|.++|+|++|+.++++|++++|+++.+|+++|.+|+.
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            4778899999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHhhcccccc
Q 019475          317 LGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       317 ~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +|+|++|+..|+++++++|+.
T Consensus        83 lg~~~eA~~~~~~al~l~P~~  103 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGD  103 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999974

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.69  E-value=4.3e-16  Score=138.71  Aligned_cols=164  Identities=18%  Similarity=0.164  Sum_probs=122.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-----CeEEecccCcc--cCC---------C---CCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-----NPRLSSFGLMK--NSR---------D---GKSY   61 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-----~~kl~Dfg~~~--~~~---------~---~~~~   61 (340)
                      ++..+.++|+.|++.+|+++|+.| ++||||||.|++++...     .+.|.|||+++  ...         .   ....
T Consensus       119 fs~~T~l~ia~q~l~~l~~lH~~G-~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~  197 (322)
T KOG1164|consen  119 FSRKTVLRIAIQNLNALEDLHSKG-FIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLF  197 (322)
T ss_pred             cCHhHHHHHHHHHHHHHHHHHhcC-cccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCC
Confidence            467899999999999999999999 99999999999998653     58999999998  311         1   1123


Q ss_pred             ccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHh
Q 019475           62 STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRC  141 (340)
Q Consensus        62 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c  141 (340)
                      .||..|+++....+...+.+.|+||++.++.+++.|..|+....... ....+.+..............+.++..+...+
T Consensus       198 rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (322)
T KOG1164|consen  198 RGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTD-LKSKFEKDPRKLLTDRFGDLKPEEFAKILEYI  276 (322)
T ss_pred             CCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccc-hHHHHHHHhhhhccccccCCChHHHHHHHHHh
Confidence            58999999999999999999999999999999999997764432111 11111111111111112233456777777777


Q ss_pred             cccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          142 LQSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       142 l~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                      -..+...+|....+...+.......
T Consensus       277 ~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  277 DSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             hccCCcCCCCHHHHHHHHHHHHHhc
Confidence            7899999999999999887766654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.68  E-value=3.6e-16  Score=120.13  Aligned_cols=102  Identities=17%  Similarity=0.053  Sum_probs=98.1

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      .+..+.+...|..++..|++++|+..|+-++.++|. ++..|+|+|.|+..+|+|++||..|.+|+.++|+++.++++.|
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag  110 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            355778899999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLE  334 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~  334 (340)
                      .|++.+|+.++|.+.|+.|+..-
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999875

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-16  Score=145.33  Aligned_cols=165  Identities=19%  Similarity=0.288  Sum_probs=121.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      ++|.....++++|+.||.|+|...-..|+.+++.|++++....+|++|||+.......      ........|.|||.+.
T Consensus        45 ~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr  124 (484)
T KOG1023|consen   45 LDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLR  124 (484)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhc
Confidence            5788889999999999999999872399999999999999999999999997765321      1112356799999998


Q ss_pred             cCC-------CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh---ccccCCCC-c-hhHHHHHHHHHHhc
Q 019475           75 TGR-------VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD---SALEGHFS-N-DEGTELVRLASRCL  142 (340)
Q Consensus        75 ~~~-------~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~li~~cl  142 (340)
                      +..       .+.+.||||||++++|+++...||.......-....+..+..   ..+++... . ...+++..++.+||
T Consensus       125 ~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw  204 (484)
T KOG1023|consen  125 GALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCW  204 (484)
T ss_pred             ccccccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhc
Confidence            642       366799999999999999999998764332222112222111   11111111 1 33457999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhhhhh
Q 019475          143 QSEARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~~~~  165 (340)
                      ..+|..||++..+...+..+...
T Consensus       205 ~e~P~~rPs~~~i~~~~~~~~~~  227 (484)
T KOG1023|consen  205 EEIPEKRPSIEQIRSKLLTINKG  227 (484)
T ss_pred             ccChhhCccHHHHHhhhhhhccc
Confidence            99999999999998877655443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=3.7e-16  Score=137.58  Aligned_cols=97  Identities=26%  Similarity=0.326  Sum_probs=92.7

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ..-+..++.+||.+|+.|+|++||.+|++||+++|+ .+..|.||+.||..+|+|++-+++|.+|++++|++++|+++++
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA  190 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD-EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRA  190 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC-CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence            445778999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHH
Q 019475          312 ACLFSLGMENDARETLKD  329 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~  329 (340)
                      .++..+|++++|+.+..-
T Consensus       191 ~A~E~lg~~~eal~D~tv  208 (606)
T KOG0547|consen  191 SAHEQLGKFDEALFDVTV  208 (606)
T ss_pred             HHHHhhccHHHHHHhhhH
Confidence            999999999999988654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4.1e-16  Score=135.41  Aligned_cols=107  Identities=20%  Similarity=0.264  Sum_probs=97.9

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC--------------ChhHhhhhhHHHHhcCChHHHHHHHHhh
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--------------SPTVYARRCLSYLMNDMPQEALGDAMQA  296 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a  296 (340)
                      ....+...+++|+.+|+.|+|..|+..|++|+..-...              .-.+|.|+|.||+++++|.+|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            55667889999999999999999999999999654421              1247999999999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          297 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       297 l~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |+++|+|.+|+|++|.++..+|+|+.|+.+|++|++++|..
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999974

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.65  E-value=9.7e-16  Score=136.31  Aligned_cols=155  Identities=23%  Similarity=0.280  Sum_probs=116.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCC----------CCcccCCccCCc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDG----------KSYSTNLAFTPP   70 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~----------~~~~~~~~y~aP   70 (340)
                      +......++.|++.++.|+|+.+ ++|||+||+||+++..+ .++++|||.+......          ....++..|++|
T Consensus        99 ~~~~~~~~~~~~~~~l~~~H~~~-~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p  177 (384)
T COG0515          99 SESEALFILAQILSALEYLHSKG-IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAP  177 (384)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-eeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCH
Confidence            45678899999999999999999 99999999999999988 7999999998754322          445789999999


Q ss_pred             ccccc---CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc----cCCCCch----hHHHHHHHHH
Q 019475           71 EYMRT---GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL----EGHFSND----EGTELVRLAS  139 (340)
Q Consensus        71 E~~~~---~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~li~  139 (340)
                      |.+.+   ...+...|+|++|++++++++|..|+...... .........+....    .......    ....+.+++.
T Consensus       178 e~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (384)
T COG0515         178 EVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNS-SATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLK  256 (384)
T ss_pred             HHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCcc-ccHHHHHHHHHhcCCcccccccCccccchhhHHHHHHHH
Confidence            99987   57888999999999999999999886544320 00011111111111    1111111    1257899999


Q ss_pred             HhcccCCCCCCCHHHHHHH
Q 019475          140 RCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       140 ~cl~~~p~~Rps~~e~l~~  158 (340)
                      +|+..+|..|.+..+...+
T Consensus       257 ~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         257 KLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             HHHhcCchhcCCHHHHhhc
Confidence            9999999999998887765

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.64  E-value=9.9e-16  Score=129.44  Aligned_cols=164  Identities=15%  Similarity=0.161  Sum_probs=126.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-----CeEEecccCcccCCCC-----------CCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-----NPRLSSFGLMKNSRDG-----------KSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-----~~kl~Dfg~~~~~~~~-----------~~~~~~   64 (340)
                      ++.++++.|+.|++.-++++|++. +|.|||||+|+||+.-+     .+.++|||+++.+.+.           ++..||
T Consensus       121 FSvKTV~miA~Qmi~rie~vH~k~-LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGT  199 (449)
T KOG1165|consen  121 FSVKTVAMIAKQMITRIEYVHEKD-LIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGT  199 (449)
T ss_pred             ccHHhHHHHHHHHHHHHHHHHhcc-eeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccc
Confidence            467899999999999999999999 99999999999998554     4899999999976533           456789


Q ss_pred             CccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc---cccCCCCchhHHHHHHHHHHh
Q 019475           65 LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS---ALEGHFSNDEGTELVRLASRC  141 (340)
Q Consensus        65 ~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~c  141 (340)
                      ..||+--...|...+.+.|+-|||-|+.+.+.|..||.+--.+.. .....++-+.   ..........+.++...+.-.
T Consensus       200 ARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tn-K~kYeKIGe~Kr~T~i~~Lc~g~P~efa~Yl~yv  278 (449)
T KOG1165|consen  200 ARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTN-KEKYEKIGETKRSTPIEVLCEGFPEEFATYLRYV  278 (449)
T ss_pred             eeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcch-HHHHHHhccccccCCHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999999999999999999988765321111 1111111111   111112335677888888888


Q ss_pred             cccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          142 LQSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       142 l~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                      -.++-.+-|..+-+...+..+....
T Consensus       279 R~L~F~E~PDYdylr~Lf~dvldr~  303 (449)
T KOG1165|consen  279 RRLDFFETPDYDYLRKLFDDVLDRL  303 (449)
T ss_pred             HhcCcccCCCHHHHHHHHHHHHHhc
Confidence            8889999999999888887776654

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.63  E-value=3.4e-16  Score=149.76  Aligned_cols=134  Identities=19%  Similarity=0.164  Sum_probs=106.8

Q ss_pred             HHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC-------------------CCCcccCCccCCcccc
Q 019475           13 LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-------------------GKSYSTNLAFTPPEYM   73 (340)
Q Consensus        13 i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-------------------~~~~~~~~~y~aPE~~   73 (340)
                      ++.+++|||+.| |+|||+||+|.+|+.-|++|+.|||+++...-                   .+..+||+.|.|||++
T Consensus       152 mvla~Eylh~yg-ivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVi  230 (1205)
T KOG0606|consen  152 MVLAVEYLHSYG-IVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVI  230 (1205)
T ss_pred             hhHHhHhhccCC-eecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhh
Confidence            367899999999 99999999999999999999999999874221                   1234689999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      .-..|+..+|.|++|+|+||.+-|..||.++.....-...+...   ....+-....+++..+++.++|+.+|..|-
T Consensus       231 lrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~---i~wpE~dea~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  231 LRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDD---IEWPEEDEALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             hhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhh---ccccccCcCCCHHHHHHHHHHHHhChHhhc
Confidence            98899999999999999999999999998875443322221111   112222445678899999999999999994

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.62  E-value=4.9e-15  Score=130.14  Aligned_cols=103  Identities=11%  Similarity=-0.047  Sum_probs=99.3

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+..+|..+...|++.+|+..|+++++++|+ ++.+|+++|.++..+|++++|+..|+++++++|++..+|+++|.+
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  141 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA  141 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3556889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++..|++++|+++|+++++++|+.
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999975

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.61  E-value=1.5e-15  Score=122.96  Aligned_cols=165  Identities=14%  Similarity=0.142  Sum_probs=126.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC---CCeEEecccCcccCCC-----------CCCcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD---GNPRLSSFGLMKNSRD-----------GKSYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~-----------~~~~~~~~~   66 (340)
                      ++.++++-++-|++.-++|+|.++ +|||||||+|+|.+-+   ..+.++|||+++.+.+           .....||..
T Consensus       108 ftmkTvLMLaDQml~RiEyvH~r~-fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaR  186 (341)
T KOG1163|consen  108 FTMKTVLMLADQMLSRIEYVHLRN-FIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTAR  186 (341)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHhhc-cccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeee
Confidence            356789999999999999999999 9999999999999754   4578999999986543           234568999


Q ss_pred             cCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc---cCCCCchhHHHHHHHHHHhcc
Q 019475           67 FTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL---EGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        67 y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~cl~  143 (340)
                      |.+--...+...+.+.|+-|+|.++.++..|..|+.+-.. ..+......+.+...   ........|.++.-.+.-|-.
T Consensus       187 YASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka-~tk~QKyEkI~EkK~s~~ie~LC~G~P~EF~myl~Y~R~  265 (341)
T KOG1163|consen  187 YASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKA-ATKKQKYEKISEKKMSTPIEVLCKGFPAEFAMYLNYCRG  265 (341)
T ss_pred             ehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccch-hhHHHHHHHHHHhhcCCCHHHHhCCCcHHHHHHHHHHhh
Confidence            9998888888889999999999999999999988765321 112222222222211   112334567789999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhhcc
Q 019475          144 SEARERPNAKSLVISLMSLQKEAE  167 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~~~~~  167 (340)
                      ..-++-|...-+.+.+..+.....
T Consensus       266 L~F~E~Pdy~ylrqlFriLfr~ln  289 (341)
T KOG1163|consen  266 LGFEEKPDYMYLRQLFRILFRTLN  289 (341)
T ss_pred             cCCCCCCcHHHHHHHHHHHHhhcc
Confidence            999999999988888777666543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=1.6e-15  Score=131.20  Aligned_cols=106  Identities=23%  Similarity=0.367  Sum_probs=99.4

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC---ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  307 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  307 (340)
                      .......++.+|+.+|++|+|..|-++|+.||.++|+.   ++.+|.|||.++.++|+..+||.+|+.|++|||.+.+||
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal  324 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL  324 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence            44566789999999999999999999999999999982   567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          308 YLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       308 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .++|.|+..++++++|+++|++|++++-.
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999998754

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.59  E-value=7.4e-16  Score=140.45  Aligned_cols=133  Identities=20%  Similarity=0.273  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccccCCCCCccchh
Q 019475            6 RLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTPESVVY   85 (340)
Q Consensus         6 ~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~   85 (340)
                      ...+...++-+++++|+.+ ++|||+|++||+++.+|++++.|||+++..-..+..+||..||+||++.  ....+.|-|
T Consensus        99 ~~~~~aelaLald~lh~l~-iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~cgt~eymApEI~~--gh~~a~D~w  175 (612)
T KOG0603|consen   99 VAFYLAELALALDHLHKLG-IAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIACGTYEYRAPEIIN--GHLSAADWW  175 (612)
T ss_pred             HHHHHHHHHHHHhhcchhH-HHHhcccccceeecccCccccCCchhhhHhHhhhhcccchhhhhhHhhh--ccCCcccch
Confidence            3456677888999999999 9999999999999999999999999999877666668999999999998  567789999


Q ss_pred             hHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           86 SFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        86 slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      |||++.++|++|..||.....        ..+..  .....|........+++..++..+|..|.-
T Consensus       176 s~gvl~felltg~~pf~~~~~--------~~Il~--~~~~~p~~l~~~a~~~~~~l~~r~p~nrLg  231 (612)
T KOG0603|consen  176 SFGVLAFELLTGTLPFGGDTM--------KRILK--AELEMPRELSAEARSLFRQLFKRNPENRLG  231 (612)
T ss_pred             hhhhhHHHHhhCCCCCchHHH--------HHHhh--hccCCchhhhHHHHHHHHHHHhhCHHHHhc
Confidence            999999999999988866211        11111  122456677888999999999999999953

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.59  E-value=1.3e-14  Score=112.43  Aligned_cols=106  Identities=14%  Similarity=0.196  Sum_probs=100.4

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ..........|..+++.|++++|+..|++++..+|. ++.+++++|.++.++|++++|+..++++++++|+++..++.+|
T Consensus        14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la   92 (135)
T TIGR02552        14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA   92 (135)
T ss_pred             hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            344566788999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhccccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .++..+|++++|+..|+++++++|...
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        93 ECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999754

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=2.5e-14  Score=120.64  Aligned_cols=103  Identities=22%  Similarity=0.344  Sum_probs=97.3

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC---CCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG---GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .+..+++.||.+|+.++|..|+.+|++.|+.   +|+.++.+|.|||.|.+.+|+|..||.||.+|+.++|++.+||++-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            5788999999999999999999999999975   4445889999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +.|++.+.++++|+.+++..+++|..
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            99999999999999999999998875

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=8.1e-15  Score=118.58  Aligned_cols=118  Identities=15%  Similarity=0.121  Sum_probs=103.1

Q ss_pred             hhchhhhhhhhHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhc--------CCCCC---------ChhHhhhhhHHHH
Q 019475          219 IANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFID--------GGTMV---------SPTVYARRCLSYL  281 (340)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~--------~~p~~---------~~~~~~~~~~~~~  281 (340)
                      ...+.+.-+....+.....+.++||.+|+.|+|.+|+..|+.||.        -.|..         +..++.|.+.|++
T Consensus       162 Yq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L  241 (329)
T KOG0545|consen  162 YQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL  241 (329)
T ss_pred             hccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh
Confidence            334444444455677788999999999999999999999999983        23430         4568999999999


Q ss_pred             hcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          282 MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       282 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ..|+|-++++.|+..+...|++.+|||++|.+....-+.++|.++|.++|++||.
T Consensus       242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            9999999999999999999999999999999999999999999999999999997

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.55  E-value=3.8e-14  Score=116.64  Aligned_cols=107  Identities=17%  Similarity=0.101  Sum_probs=99.8

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHH-HhcCC--hHHHHHHHHhhhhhCCCchHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSY-LMNDM--PQEALGDAMQAQVVSPDWPTAL  307 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~al~l~p~~~~a~  307 (340)
                      ...+...|...|..+...|++++|+..|++|++++|+ ++.++.++|.++ ...|+  +++|.+.++++++++|+++.++
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al  147 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL  147 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence            3455778999999999999999999999999999999 999999999985 67787  5999999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          308 YLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       308 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +.+|.+++.+|+|++|+..|+++++++|.+.
T Consensus       148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        148 MLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999999999754

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.5e-14  Score=116.56  Aligned_cols=99  Identities=23%  Similarity=0.314  Sum_probs=95.4

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..++++|+.+|....|..||.+|.+||.++|. .+.+|-||+.||+++++++.+..||.+|++++|+.++++|.+|.+
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcc
Q 019475          314 LFSLGMENDARETLKDGTNL  333 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l  333 (340)
                      +.+...|++|+..+.+|..+
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHhhccccHHHHHHHHHHHH
Confidence            99999999999999999665

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.53  E-value=2.9e-14  Score=129.09  Aligned_cols=117  Identities=12%  Similarity=0.063  Sum_probs=102.5

Q ss_pred             hhhhhhhhHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCC
Q 019475          222 ELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP  301 (340)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p  301 (340)
                      .+...-+.-.+.-+....+.|..+-++|++++|+.+|.+||.+.|. .+.+|.|+|.+|..+|+.++|+++|.+||.++|
T Consensus       375 ~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP  453 (966)
T KOG4626|consen  375 RLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQINP  453 (966)
T ss_pred             HHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence            3333333334455667888899999999999999999999999999 999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccccC
Q 019475          302 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK  339 (340)
Q Consensus       302 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~  339 (340)
                      .+++|+.++|.+|..-|+..+|++.|+.||+++|..++
T Consensus       454 t~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd  491 (966)
T KOG4626|consen  454 TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD  491 (966)
T ss_pred             HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence            99999999999999999999999999999999998543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.52  E-value=3e-14  Score=96.65  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=60.1

Q ss_pred             ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcC-ChHHHHHHHHHhhcccc
Q 019475          269 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG-MENDARETLKDGTNLEA  335 (340)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~~  335 (340)
                      ++.+|+++|.++..+|+|++|+..|++|++++|+++.+|+++|.++..+| ++++|+++|++++++||
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            67888899999999999999999999999999999999999999999998 79999999999998887

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.52  E-value=1e-13  Score=134.28  Aligned_cols=102  Identities=25%  Similarity=0.320  Sum_probs=95.9

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      ..+..++..|+.+++.|+|++|+..|+++|++.|+  +..|.|+|.||.++|+|++|+.+|++|++++|++.++|+++|.
T Consensus       125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~  202 (615)
T TIGR00990       125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN  202 (615)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34678999999999999999999999999999996  6799999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhhccccc
Q 019475          313 CLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +|..+|++++|+.+|..++.+++.
T Consensus       203 a~~~lg~~~eA~~~~~~~~~~~~~  226 (615)
T TIGR00990       203 AYDGLGKYADALLDLTASCIIDGF  226 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999888777654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.49  E-value=1.6e-14  Score=127.97  Aligned_cols=104  Identities=23%  Similarity=0.295  Sum_probs=100.5

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +..+..+++.+++.++|+.|+..|.+||+++|+ ++.+|.||+.++++.++|..|+.|+.+||+++|.+.++|+++|.+.
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            567889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhcccccccC
Q 019475          315 FSLGMENDARETLKDGTNLEAKKNK  339 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~~~  339 (340)
                      +.++++.+|..+|+++..+.|+++.
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPD  107 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHH
Confidence            9999999999999999999998753

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.49  E-value=4.8e-13  Score=97.90  Aligned_cols=106  Identities=18%  Similarity=0.206  Sum_probs=97.6

Q ss_pred             HHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCch----H
Q 019475          230 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP----T  305 (340)
Q Consensus       230 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~----~  305 (340)
                      .+.+.+..+..+|..+...|+.+.|++.|.++|.+.|. ++.+|+||+.++..+|+.++|+.|.++|+++.-+..    .
T Consensus        38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacq  116 (175)
T KOG4555|consen   38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQ  116 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHH
Confidence            35566778888999999999999999999999999999 999999999999999999999999999999976644    4


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +|..+|.+|..+|+.+.|..+|+.|-++..+
T Consensus       117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  117 AFVQRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            8999999999999999999999999988765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.47  E-value=1.6e-13  Score=116.39  Aligned_cols=106  Identities=18%  Similarity=0.229  Sum_probs=101.6

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      ...++....+.|+.++..|++..|+..|-.||+.+|+ ++.+++.||.+|+.+|+-.-|+.|++++|++.||+..|...+
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            3456778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.+++++|++++|.++|+..|+-+|+.
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999863

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.47  E-value=1.5e-13  Score=124.56  Aligned_cols=105  Identities=10%  Similarity=0.026  Sum_probs=96.3

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ...++.+.+.|+.+...|.+++|+.+|.+|++..|. -+.+++|+|.+|..+|++++|+.+|++||+++|.++++|.++|
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG  429 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG  429 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence            344667889999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhcccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +.|-.+|+..+|+++|.+|+.++|.-
T Consensus       430 nt~ke~g~v~~A~q~y~rAI~~nPt~  455 (966)
T KOG4626|consen  430 NTYKEMGDVSAAIQCYTRAIQINPTF  455 (966)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence            99999999999999999999999873

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.3e-13  Score=124.20  Aligned_cols=101  Identities=16%  Similarity=0.208  Sum_probs=97.1

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      .+...-.|..++-.|+|++|+.+|+.||..+|+ +..+|+.+|.++..-.+.++||..|++|++|.|.++++.|++|+++
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~  508 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC  508 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence            445567899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +.+|.|+||+..|-.||.+.++
T Consensus       509 mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  509 MNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999887

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.44  E-value=1e-12  Score=105.96  Aligned_cols=97  Identities=12%  Similarity=0.029  Sum_probs=60.5

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +....+.|-.+++.|++..|...+++||+.+|+ ++.+|.-||.+|.++|+.+.|-+.|++|+.++|++...+++-|.-+
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence            334555566666666666666666666666666 6666666666666666666666666666666666666666666666


Q ss_pred             HhcCChHHHHHHHHHhhc
Q 019475          315 FSLGMENDARETLKDGTN  332 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~  332 (340)
                      +.+|+|++|.+.|++|+.
T Consensus       114 C~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         114 CAQGRPEEAMQQFERALA  131 (250)
T ss_pred             HhCCChHHHHHHHHHHHh
Confidence            666666666666666553

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.44  E-value=1.4e-13  Score=93.38  Aligned_cols=67  Identities=21%  Similarity=0.278  Sum_probs=64.5

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcC-ChHHHHHHHHhhhhhCC
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSP  301 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p  301 (340)
                      .+..+...|..++..|+|++|+..|+++|+++|+ ++.+|+++|.+|..+| ++++|+.++++|++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3677899999999999999999999999999999 9999999999999999 79999999999999998

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.40  E-value=4.9e-13  Score=94.42  Aligned_cols=82  Identities=21%  Similarity=0.346  Sum_probs=74.7

Q ss_pred             cCCHHHHHHHHHhhhcCCCCC-ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHH
Q 019475          248 AKDFSTAIDCYTQFIDGGTMV-SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARET  326 (340)
Q Consensus       248 ~g~~~~A~~~~~~ai~~~p~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~  326 (340)
                      +|+|+.|+..|+++++.+|.. +..+++++|.||+++|+|++|+..+++ ++.+|.+...++.+|.+++.+|+|++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            689999999999999999962 467888899999999999999999999 999999999999999999999999999999


Q ss_pred             HHHh
Q 019475          327 LKDG  330 (340)
Q Consensus       327 ~~~a  330 (340)
                      |++|
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9885

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.39  E-value=5.8e-13  Score=108.52  Aligned_cols=97  Identities=16%  Similarity=0.169  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCceeccc-CCCCeEEcCCCCeEEecccCcccCCCCCCc-----------------ccCCccC
Q 019475            7 LRVALYLAQALEYCSSKGRALYHDL-NAYRILFDKDGNPRLSSFGLMKNSRDGKSY-----------------STNLAFT   68 (340)
Q Consensus         7 ~~i~~~i~~~l~~lH~~~~iih~dl-kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-----------------~~~~~y~   68 (340)
                      ..++.|++.+|.++|++| |+|||| ||+|||++.+|.++|+|||++.........                 ..++.|+
T Consensus        94 ~~~~~qi~~~L~~lH~~G-IvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l  172 (218)
T PRK12274         94 LAYFRAARRLLQQLHRCG-VAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAAL  172 (218)
T ss_pred             HHHHHHHHHHHHHHHHCc-CccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            467889999999999999 999999 799999999999999999999865543310                 1256677


Q ss_pred             CccccccC-CCC-CccchhhHHHHHHHHHhCCCCCCcc
Q 019475           69 PPEYMRTG-RVT-PESVVYSFGTMLLDLLSGKHIPPSH  104 (340)
Q Consensus        69 aPE~~~~~-~~~-~~~Di~slG~~~~el~~g~~~~~~~  104 (340)
                      .|+...-- ..+ ...+.++.|+-+|.++|+..+...+
T Consensus       173 ~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        173 TPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             CHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence            77644321 223 5678889999999999999776543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.39  E-value=2.9e-12  Score=124.19  Aligned_cols=101  Identities=17%  Similarity=0.152  Sum_probs=64.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +..+...|..++..|++++|+..|+++++++|+ +..+|.++|.++..+|++++|+.+++++++++|+++.+|+.+|.++
T Consensus       331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH  409 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            344555566666666666666666666666666 6666666666666666666666666666666666666666666666


Q ss_pred             HhcCChHHHHHHHHHhhccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +.+|++++|+.+|+++++++|+
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~  431 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPD  431 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCcc
Confidence            6666666666666666666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.39  E-value=4.4e-12  Score=95.70  Aligned_cols=101  Identities=19%  Similarity=0.171  Sum_probs=94.0

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC---hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc---hHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYL  309 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~  309 (340)
                      ..+...|..+++.|++++|+..|.+++...|+ +   +.+++.+|.++.+.|++++|+..+++++..+|++   +.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            45778899999999999999999999999987 5   5789999999999999999999999999999985   678999


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          310 QAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       310 ~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +|.++..+|++++|+..|+++++..|+.
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            9999999999999999999999998874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.38  E-value=3.4e-12  Score=91.36  Aligned_cols=98  Identities=20%  Similarity=0.310  Sum_probs=93.7

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhc
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  317 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~  317 (340)
                      +...|..++..|++++|+..++++++..|. +..+++++|.++...+++++|+..+++++.+.|.+..+++.+|.++..+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            567888899999999999999999999999 8899999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhccccc
Q 019475          318 GMENDARETLKDGTNLEAK  336 (340)
Q Consensus       318 ~~~~~A~~~~~~al~l~~~  336 (340)
                      |++++|...++++++++|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999998874

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.37  E-value=2.6e-12  Score=109.19  Aligned_cols=105  Identities=23%  Similarity=0.284  Sum_probs=99.4

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .+..+...+-++..++..|.+++||+.|+.||+++|. .+.+|.+|+.+++++++...|+.||..|++++|+..+.|-.+
T Consensus       110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr  188 (377)
T KOG1308|consen  110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR  188 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence            3444567888899999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      |.+...+|++++|..+++.|.++|..
T Consensus       189 g~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  189 GYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hHHHHHhhchHHHHHHHHHHHhcccc
Confidence            99999999999999999999999865

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.36  E-value=5.4e-12  Score=125.95  Aligned_cols=103  Identities=8%  Similarity=-0.099  Sum_probs=98.5

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..+.+.|++++|+..|+++++++|+ ++.+++++|.++..+|++++|+..+++|++++|+++.+++++|.++
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al  687 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN  687 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            456778899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ..+|++++|+..|+++++++|+..
T Consensus       688 ~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        688 QRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999753

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.35  E-value=9.3e-12  Score=100.53  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=95.6

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC--ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  308 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  308 (340)
                      ....+..+...|..+...|++++|+..|+++++..|+.  ...+++++|.++.++|++++|+..+++++++.|++..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            33556678999999999999999999999999887751  2479999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC--------------hHHHHHHHHHhhccccc
Q 019475          309 LQAACLFSLGM--------------ENDARETLKDGTNLEAK  336 (340)
Q Consensus       309 ~~g~~~~~~~~--------------~~~A~~~~~~al~l~~~  336 (340)
                      .+|.++..+|+              +++|++.++++++++|.
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence            99999999998              68899999999988886

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.35  E-value=1.4e-12  Score=116.53  Aligned_cols=68  Identities=18%  Similarity=0.134  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCceeccc-CCCCeEEcCCCCeEEecccCcccCCCCC------------CcccCCccCCcccc
Q 019475            7 LRVALYLAQALEYCSSKGRALYHDL-NAYRILFDKDGNPRLSSFGLMKNSRDGK------------SYSTNLAFTPPEYM   73 (340)
Q Consensus         7 ~~i~~~i~~~l~~lH~~~~iih~dl-kp~Nil~~~~~~~kl~Dfg~~~~~~~~~------------~~~~~~~y~aPE~~   73 (340)
                      ..++.+++.||.|||++| |+|||| ||+|||++.++.+||+|||+++......            ...+++.|++||.+
T Consensus       114 ~~~~~~i~~aL~~lH~~g-IiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~  192 (365)
T PRK09188        114 PAWFRSAHRALRDLHRAG-ITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDAL  192 (365)
T ss_pred             HHHHHHHHHHHHHHHHCC-CeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccC
Confidence            578899999999999999 999999 9999999999999999999998654332            23457789999988


Q ss_pred             cc
Q 019475           74 RT   75 (340)
Q Consensus        74 ~~   75 (340)
                      ..
T Consensus       193 ~~  194 (365)
T PRK09188        193 TP  194 (365)
T ss_pred             Ch
Confidence            63

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.35  E-value=7e-12  Score=120.64  Aligned_cols=112  Identities=6%  Similarity=-0.066  Sum_probs=94.8

Q ss_pred             hhhhhHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCch
Q 019475          225 FQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP  304 (340)
Q Consensus       225 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~  304 (340)
                      ++-....+..++.+...|....+.|.+++|+..++.+++++|+ +..++.+++.++.+++++++|+..+++++..+|+++
T Consensus        76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~  154 (694)
T PRK15179         76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA  154 (694)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence            3333445566778888888888889999999999999999998 899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          305 TALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       305 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .+++.+|.++.++|+|++|++.|++++..+|..
T Consensus       155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~  187 (694)
T PRK15179        155 REILLEAKSWDEIGQSEQADACFERLSRQHPEF  187 (694)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999988866653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=1.3e-12  Score=119.63  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=73.8

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC---------------------------------ChhHhhhhhHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---------------------------------SPTVYARRCLSYL  281 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~---------------------------------~~~~~~~~~~~~~  281 (340)
                      -+.|...||.+.-+++|+.||++|.+||+++|+.                                 ++.+||.+|.+|+
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            4456666666666666666666666666655530                                 4567777778888


Q ss_pred             hcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          282 MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       282 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++++++.|.-.|++|++++|.+.......|.++.++|+.++|++.|++|+.+||+.
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            88888888887888888888777777777778888888888888888887777774

>PRK15331 chaperone protein SicA; Provisional

Probab=99.34  E-value=7e-12  Score=96.98  Aligned_cols=99  Identities=9%  Similarity=0.007  Sum_probs=95.4

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      ...+.+...|..+|..|++++|...|+-...++|. ++..+..+|.|+..+++|++|+..|..|..++++++...|..|.
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            44667888999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhhc
Q 019475          313 CLFSLGMENDARETLKDGTN  332 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~  332 (340)
                      |++.+|+.++|...|..+++
T Consensus       114 C~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            99999999999999999987

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=1.4e-12  Score=119.44  Aligned_cols=80  Identities=13%  Similarity=0.085  Sum_probs=66.8

Q ss_pred             HHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC---------------------------------
Q 019475          256 DCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---------------------------------  302 (340)
Q Consensus       256 ~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---------------------------------  302 (340)
                      .+-...|..+|+ .|+.|..+|.||..+++++.||..|++|+++||+                                 
T Consensus       408 ~Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  408 YLAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            344567899999 9999999999999999999999999999977764                                 


Q ss_pred             -chHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          303 -WPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       303 -~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                       +..|||-+|.+|.++++++.|.-.|++|++++|.
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~  521 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS  521 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc
Confidence             4557777888888888888888888888888776

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.32  E-value=2.3e-11  Score=97.85  Aligned_cols=106  Identities=20%  Similarity=0.124  Sum_probs=91.4

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCC--CChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  308 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  308 (340)
                      ....+..+...|..+...|+|++|+..|++++.+.|+  +.+.+|+++|.+|..+|++++|+..+++|++++|.+..++.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~  110 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN  110 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            3345677888999999999999999999999988765  13458999999999999999999999999999999999999


Q ss_pred             HHHHHHH-------hcCChH-------HHHHHHHHhhccccc
Q 019475          309 LQAACLF-------SLGMEN-------DARETLKDGTNLEAK  336 (340)
Q Consensus       309 ~~g~~~~-------~~~~~~-------~A~~~~~~al~l~~~  336 (340)
                      ++|.++.       .+|+++       +|+..|++++.++|.
T Consensus       111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999       777766       666666677777775

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.32  E-value=8.8e-12  Score=97.33  Aligned_cols=87  Identities=15%  Similarity=0.007  Sum_probs=81.5

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .......+...|..+.+.|+|++|+..|+++++++|+ ++.+++++|.++..+|++++|+..|++|++++|+++..+..+
T Consensus        54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~  132 (144)
T PRK15359         54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR  132 (144)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            4455778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 019475          311 AACLFSLG  318 (340)
Q Consensus       311 g~~~~~~~  318 (340)
                      |.+...++
T Consensus       133 ~~~~~~l~  140 (144)
T PRK15359        133 QNAQIMVD  140 (144)
T ss_pred             HHHHHHHH
Confidence            99887653

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=9.2e-12  Score=118.87  Aligned_cols=88  Identities=16%  Similarity=0.082  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 019475          249 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK  328 (340)
Q Consensus       249 g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~  328 (340)
                      +++++|+..+++|++++|+ ++.+|..+|.++..+|++++|+..|++|++++|+++.+|+.+|.++..+|++++|+..|+
T Consensus       318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4467777777777777777 777777777777777777777777777777777777777777777777777777777777


Q ss_pred             Hhhcccccc
Q 019475          329 DGTNLEAKK  337 (340)
Q Consensus       329 ~al~l~~~~  337 (340)
                      ++++++|..
T Consensus       397 ~Al~l~P~~  405 (553)
T PRK12370        397 ECLKLDPTR  405 (553)
T ss_pred             HHHhcCCCC
Confidence            777777763

>PLN02789 farnesyltranstransferase

Probab=99.27  E-value=7e-11  Score=104.05  Aligned_cols=117  Identities=10%  Similarity=-0.042  Sum_probs=103.6

Q ss_pred             chhhhhhhhHHHHHHHhHHHhHhHHhhcC-CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCCh--HHHHHHHHhhh
Q 019475          221 NELSFQMWTSQMQETLNSKKHGDTAFRAK-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMP--QEALGDAMQAQ  297 (340)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al  297 (340)
                      .........-.+.....+..+|..+...| ++++|+..++++++.+|+ +..+|++|+.++.++|+.  ++++..+++++
T Consensus        57 L~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal  135 (320)
T PLN02789         57 LDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKIL  135 (320)
T ss_pred             HHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence            33444444445566678889999998888 689999999999999999 999999999999999974  78999999999


Q ss_pred             hhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          298 VVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       298 ~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +++|++..+|+.+|.++..+|++++|++++.++|++||+..
T Consensus       136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~  176 (320)
T PLN02789        136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN  176 (320)
T ss_pred             HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence            99999999999999999999999999999999999998754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.27  E-value=2.7e-11  Score=99.68  Aligned_cols=91  Identities=16%  Similarity=0.137  Sum_probs=85.6

Q ss_pred             hcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH-HhcCC--hHHH
Q 019475          247 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL-FSLGM--ENDA  323 (340)
Q Consensus       247 ~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~-~~~~~--~~~A  323 (340)
                      ..++.++++..|+++++.+|+ +..+|.++|.+|..+|++++|+..|++|++++|+++..++.+|.++ ...|+  +++|
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            367889999999999999999 9999999999999999999999999999999999999999999986 67787  5999


Q ss_pred             HHHHHHhhccccccc
Q 019475          324 RETLKDGTNLEAKKN  338 (340)
Q Consensus       324 ~~~~~~al~l~~~~~  338 (340)
                      .+.|++++++||+..
T Consensus       130 ~~~l~~al~~dP~~~  144 (198)
T PRK10370        130 REMIDKALALDANEV  144 (198)
T ss_pred             HHHHHHHHHhCCCCh
Confidence            999999999999854

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.26  E-value=1e-11  Score=82.99  Aligned_cols=61  Identities=23%  Similarity=0.252  Sum_probs=32.8

Q ss_pred             hhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          276 RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       276 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            4555555555555555555555555555555555555555555555555555555555554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=2.2e-11  Score=107.93  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=83.7

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ++.+.-+|.-+|-.|++..|-..|+++|.++|. +...|..||.+|+...+-++-..+|++|..+||.++..||.+|+++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            556777777788888888888888888888888 7777888888888888888888888888888888888888888888


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +.+++|++|+.+|++|+.|||..
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe~  427 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPEN  427 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChhh
Confidence            88888888888888888888763

>PRK12370 invasion protein regulator; Provisional

Probab=99.26  E-value=3.6e-11  Score=114.83  Aligned_cols=100  Identities=11%  Similarity=-0.052  Sum_probs=92.6

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..+...|++++|+..|++|++++|+ ++.+|+++|.++..+|++++|+..++++++++|+++.+++.++.+
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            3456677888899999999999999999999999 999999999999999999999999999999999999888888888


Q ss_pred             HHhcCChHHHHHHHHHhhccc
Q 019475          314 LFSLGMENDARETLKDGTNLE  334 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~  334 (340)
                      ++.+|++++|+..++++++.+
T Consensus       416 ~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        416 TYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             HHhccCHHHHHHHHHHHHHhc
Confidence            999999999999999999775

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.26  E-value=1.8e-11  Score=81.85  Aligned_cols=64  Identities=19%  Similarity=0.224  Sum_probs=60.1

Q ss_pred             HhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCch
Q 019475          240 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP  304 (340)
Q Consensus       240 ~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~  304 (340)
                      .+|..+++.|+|++|+..|+++++.+|+ ++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5788999999999999999999999999 999999999999999999999999999999999975

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.8e-11  Score=119.51  Aligned_cols=153  Identities=15%  Similarity=0.147  Sum_probs=108.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-------CCeEEecccCcccC---CCCCC---cccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-------GNPRLSSFGLMKNS---RDGKS---YSTNLAF   67 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-------~~~kl~Dfg~~~~~---~~~~~---~~~~~~y   67 (340)
                      ++|.-++.++.|++.-|+.||..+ ||||||||+|+||...       ..++|+|||-+.-+   .++..   ..+|-.+
T Consensus       791 m~e~lv~~~~~qml~ive~lH~~~-IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f  869 (974)
T KOG1166|consen  791 MDEYLVMFFSCQMLRIVEHLHAMG-IIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLF  869 (974)
T ss_pred             CCchhhhHHHHHHHHHHHHHHhcc-eecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeeeeccccc
Confidence            467778899999999999999999 9999999999999532       35899999987643   23322   3557788


Q ss_pred             CCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchh-HHHHHHHHHHhcccCC
Q 019475           68 TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE-GTELVRLASRCLQSEA  146 (340)
Q Consensus        68 ~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~cl~~~p  146 (340)
                      -.+|...|.+++...|.|.|+.+++-|+.|+..-       ...+....+.. .    ++.-. ..-..+|...+|..|-
T Consensus       870 ~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~q-------~~~g~~~~~~~-~----~~Ry~~~~~W~~~F~~lLN~~~  937 (974)
T KOG1166|consen  870 DCIEMREGRPWTYQIDYFGLAATVHVMLFGKYME-------VKNGSSWMVKT-N----FPRYWKRDMWNKFFDLLLNPDC  937 (974)
T ss_pred             hhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHH-------hcCCcceeccc-c----chhhhhHHHHHHHHHHHhCcCc
Confidence            9999999999999999999999999999997211       11111111100 0    11111 1234567777888444


Q ss_pred             CCCCCHHHHHHHHHhhhhhc
Q 019475          147 RERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       147 ~~Rps~~e~l~~l~~~~~~~  166 (340)
                      ..=|...++...++......
T Consensus       938 ~~~p~l~~lr~~~~~~~~~~  957 (974)
T KOG1166|consen  938 DTLPNLQELRTELEEVLAEH  957 (974)
T ss_pred             ccchhHHHHHHHHHHHHHHH
Confidence            44478888888777766553

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.24  E-value=2.6e-12  Score=106.84  Aligned_cols=77  Identities=14%  Similarity=0.132  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccccCCCCCccchhhHH
Q 019475            9 VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTPESVVYSFG   88 (340)
Q Consensus         9 i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG   88 (340)
                      ...+++.+|..+|+.| ++|||++|+||+++.+| ++|+|||...........        ..++....+..++|+|+||
T Consensus       140 ~~~~i~~~l~~lH~~g-i~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~a~--------d~~vler~y~~~~di~~lg  209 (232)
T PRK10359        140 VKAKIKASIESLHQHG-MVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRKAK--------DRIDLERHYGIKNEIKDLG  209 (232)
T ss_pred             HHHHHHHHHHHHHHcC-CccCCCChHHEEEeCCC-EEEEECCCcccccchhhH--------HHHHHHhHhccccccccee
Confidence            4669999999999999 99999999999999988 999999987655322211        0133345566789999999


Q ss_pred             HHHHHHH
Q 019475           89 TMLLDLL   95 (340)
Q Consensus        89 ~~~~el~   95 (340)
                      +++..+.
T Consensus       210 ~~~~~~~  216 (232)
T PRK10359        210 YYLLIYK  216 (232)
T ss_pred             EeehHHH
Confidence            9877553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=6e-11  Score=104.56  Aligned_cols=101  Identities=17%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...|.--|.+++..++-..||..|++|++++|. +..+||.+|++|.-++-..=|+-+|++|+++.|+++..|..+|.||
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY  442 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY  442 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            445566678888999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .++++.++|+++|++|+.....
T Consensus       443 ~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  443 EKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHhccHHHHHHHHHHHHhcccc
Confidence            9999999999999999987654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.23  E-value=5.1e-11  Score=101.36  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=95.5

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh---hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchH---HH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT---AL  307 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~  307 (340)
                      .+..+...|..++..|+|++|+..|++++...|+ ++   .+++.+|.+|..+|++++|+..++++++..|+++.   ++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            3557889999999999999999999999999998 65   68899999999999999999999999999998887   79


Q ss_pred             HHHHHHHHhc--------CChHHHHHHHHHhhcccccc
Q 019475          308 YLQAACLFSL--------GMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       308 ~~~g~~~~~~--------~~~~~A~~~~~~al~l~~~~  337 (340)
                      +.+|.++..+        |++++|++.|+++++.+|+.
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence            9999999987        89999999999999999874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.23  E-value=8.9e-11  Score=94.85  Aligned_cols=109  Identities=15%  Similarity=0.067  Sum_probs=99.6

Q ss_pred             hHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhh--CCCchHH
Q 019475          229 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--SPDWPTA  306 (340)
Q Consensus       229 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--~p~~~~a  306 (340)
                      ..++.....+.-++..+.+.|+.+.|-+.|++|+.++|+ +..+++|-|.-+..+|+|++|...|++|+..  .|.-+..
T Consensus        63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t  141 (250)
T COG3063          63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT  141 (250)
T ss_pred             HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence            335566678888899999999999999999999999999 9999999999999999999999999999864  4566779


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          307 LYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       307 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      |-++|.|-++.|+++.|.+.|+++|++||+.+
T Consensus       142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         142 LENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            99999999999999999999999999999854

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=1.4e-10  Score=97.63  Aligned_cols=105  Identities=12%  Similarity=0.063  Sum_probs=90.6

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhC--CCchHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS--PDWPTALYL  309 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~~~~a~~~  309 (340)
                      ......+...|..++..|++++|+..|+++++..|. +..+++++|.++..+|++++|+..+++++...  |.....++.
T Consensus        62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            344556778888899999999999999999999998 88999999999999999999999999998754  556778889


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          310 QAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       310 ~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +|.++..+|++++|.+.|+++++.+|..
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999999888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.21  E-value=1.7e-11  Score=100.40  Aligned_cols=53  Identities=15%  Similarity=0.204  Sum_probs=47.5

Q ss_pred             CChHHHHHHHHHHHHHHHHH-HhCCCceecccCCCCeEEcCCCCeEEecccCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYC-SSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS   55 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~l-H~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~   55 (340)
                      ++.++...++.|++.+|.++ |+.| |+||||||+|||++ ++.++|+|||++...
T Consensus       114 ~~~~~~~~i~~qi~~~L~~l~H~~g-iiHrDlkP~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         114 LSESKARELYLQVIQIMRILYQDCR-LVHADLSEYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHEEEE-CCcEEEEEccccccC
Confidence            45678899999999999999 6888 99999999999998 578999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.21  E-value=1.4e-10  Score=99.11  Aligned_cols=100  Identities=10%  Similarity=-0.015  Sum_probs=90.2

Q ss_pred             hHHHhHhHH-hhcCCHHHHHHHHHhhhcCCCCCC---hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC---chHHHHH
Q 019475          237 NSKKHGDTA-FRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---WPTALYL  309 (340)
Q Consensus       237 ~~~~~g~~~-~~~g~~~~A~~~~~~ai~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~  309 (340)
                      .....|..+ ++.|+|++|+..|++.++..|+ +   +.+++.+|.+|+..|+|++|+..|+++++..|+   .+.+++.
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            345556665 5679999999999999999999 6   579999999999999999999999999999887   5779999


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          310 QAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       310 ~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +|.++..+|++++|...|+++++..|+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            9999999999999999999999998874

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.21  E-value=1.1e-10  Score=112.56  Aligned_cols=107  Identities=13%  Similarity=0.026  Sum_probs=100.7

Q ss_pred             hHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHH
Q 019475          229 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  308 (340)
Q Consensus       229 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  308 (340)
                      .-.+.........+..+.+.+++++|+..+++++..+|+ ++.+++++|.++..+|+|++|++.|++++..+|+++.++.
T Consensus       114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~  192 (694)
T PRK15179        114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV  192 (694)
T ss_pred             hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence            335666778899999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          309 LQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       309 ~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .+|.++...|+.++|..+|++|+++...
T Consensus       193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        193 GWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            9999999999999999999999987543

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=2.9e-12  Score=121.90  Aligned_cols=153  Identities=19%  Similarity=0.219  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHH-hCCCceecccCCCCeEEcCCC-CeEEecccCcccCCC-C------CCccc-CCccCCccccc
Q 019475            5 MRLRVALYLAQALEYCS-SKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRD-G------KSYST-NLAFTPPEYMR   74 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH-~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~-~------~~~~~-~~~y~aPE~~~   74 (340)
                      ..-.++.|+..++.|+| ..+ +.|+||||+|.+++..+ .++++|||++..+.. .      ....| ++.|++||...
T Consensus       124 ~~~~~~~ql~s~l~~~H~~~~-~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~  202 (601)
T KOG0590|consen  124 SASRYLPQLNSGLSYLHPENG-VTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLS  202 (601)
T ss_pred             chhhhhhhhccCccccCcccc-cccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCccccc
Confidence            34567899999999999 888 99999999999999999 999999999987665 2      12357 89999999998


Q ss_pred             cC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +. ...+..|+||.|+++.-+++|..|+............+.... ................+++.+++..+|..|.+.+
T Consensus       203 ~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~  281 (601)
T KOG0590|consen  203 GKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNK-GRFTQLPWNSISDQAHDLLHKILKENPSNRLSIE  281 (601)
T ss_pred             chhhcCCCcccccccccccccccCCCCccccccccccceeecccc-cccccCccccCChhhhhcccccccCCchhccccc
Confidence            74 457789999999999999999987644322211111111111 0111122334566788999999999999999998


Q ss_pred             HHHHHH
Q 019475          154 SLVISL  159 (340)
Q Consensus       154 e~l~~l  159 (340)
                      ++...-
T Consensus       282 ~~~~d~  287 (601)
T KOG0590|consen  282 ELKLDN  287 (601)
T ss_pred             cccccc
Confidence            886543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.20  E-value=1.1e-10  Score=113.38  Aligned_cols=117  Identities=9%  Similarity=-0.047  Sum_probs=100.0

Q ss_pred             hchhhhhhhhHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhh
Q 019475          220 ANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV  299 (340)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l  299 (340)
                      +..+..............+...|......|++++|+..|+++++.+|+ ++.++..+|.++..+|++++|+..+++++++
T Consensus        61 A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l  139 (656)
T PRK15174         61 GLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLA  139 (656)
T ss_pred             hHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            334444444445556677888888888899999999999999999999 9999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          300 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       300 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +|+++.++..+|.++..+|++++|+..|++++..+|..
T Consensus       140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~  177 (656)
T PRK15174        140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR  177 (656)
T ss_pred             CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999988887764

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.20  E-value=2.6e-11  Score=99.63  Aligned_cols=53  Identities=17%  Similarity=0.237  Sum_probs=48.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR   56 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~   56 (340)
                      +..+...++.|++.++.++|+ +| |+||||||.||+++ ++.++|+|||++....
T Consensus       115 ~~~~~~~i~~~l~~~l~~lH~~~g-ivHrDlkP~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145         115 EEEEAEELYEQVVEQMRRLYQEAG-LVHGDLSEYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCC-EecCCCChhhEEEE-CCCEEEEEcccceecC
Confidence            456788999999999999999 88 99999999999999 8999999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.20  E-value=7.8e-11  Score=103.59  Aligned_cols=89  Identities=17%  Similarity=0.082  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHhhhc---CCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHH
Q 019475          249 KDFSTAIDCYTQFID---GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARE  325 (340)
Q Consensus       249 g~~~~A~~~~~~ai~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~  325 (340)
                      +..+.++..++++|.   ++|...+..|+++|.+|..+|++++|+.+|+++++++|+++.+|+.+|.++..+|++++|++
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            467889999999996   45553578899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccc
Q 019475          326 TLKDGTNLEAKK  337 (340)
Q Consensus       326 ~~~~al~l~~~~  337 (340)
                      .|+++++++|+.
T Consensus       120 ~~~~Al~l~P~~  131 (296)
T PRK11189        120 AFDSVLELDPTY  131 (296)
T ss_pred             HHHHHHHhCCCC
Confidence            999999999974

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.19  E-value=6.6e-11  Score=105.63  Aligned_cols=70  Identities=9%  Similarity=0.055  Sum_probs=61.0

Q ss_pred             HHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChh---HhhhhhHHHHhcCChHHHHHHHHhhhhhC
Q 019475          230 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQAQVVS  300 (340)
Q Consensus       230 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~l~  300 (340)
                      .+......+.++|..+++.|+|++|+..|++||+++|+ ++.   +|+|+|.||..+|++++|++++++|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45666788899999999999999999999999999998 775   49999999999999999999999999983

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=99.16  E-value=6e-10  Score=98.03  Aligned_cols=163  Identities=23%  Similarity=0.278  Sum_probs=114.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccc----
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR----   74 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~----   74 (340)
                      .|...+++++.++.+.+-||.+| .+-||++++|+|+++++.|.|.|-........+   ...+|...|++||.-.    
T Consensus       115 ~w~fllrvaRnlA~aFA~lH~~G-h~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ~~~sf  193 (637)
T COG4248         115 AWDFLLRVARNLASAFATLHEHG-HVVGDVNQNSFLVSDDSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQTLPSF  193 (637)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcC-CcccccCccceeeecCceEEEEcccceeeccCCceEecccCccccCCHHHhccccc
Confidence            68999999999999999999999 999999999999999999999874432222222   2346788999999654    


Q ss_pred             -cCCCCCccchhhHHHHHHHHHhC-CCCCCcch---------hHHhhhhhhhHhhhcccc-----CCCC-chhHHHHHHH
Q 019475           75 -TGRVTPESVVYSFGTMLLDLLSG-KHIPPSHA---------LDLIRSKNFLLLMDSALE-----GHFS-NDEGTELVRL  137 (340)
Q Consensus        75 -~~~~~~~~Di~slG~~~~el~~g-~~~~~~~~---------~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~l  137 (340)
                       +..-+..+|.|.||+++++++.| +.||.+--         ...+..+.+....+....     ..+| .-.++++..+
T Consensus       194 ~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAl  273 (637)
T COG4248         194 VGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQAL  273 (637)
T ss_pred             cccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechhccCCCCCCCCCCChhhcCHHHHHH
Confidence             34457789999999999999887 66765421         111222222211111111     1111 1345788999


Q ss_pred             HHHhcccC--CCCCCCHHHHHHHHHhhhhh
Q 019475          138 ASRCLQSE--ARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       138 i~~cl~~~--p~~Rps~~e~l~~l~~~~~~  165 (340)
                      ..+|+...  +.-|||+...+..|..+..+
T Consensus       274 F~qaF~~~~~~~~RP~a~aW~aAl~al~~~  303 (637)
T COG4248         274 FQQAFTESGVATPRPTAKAWVAALDALRQQ  303 (637)
T ss_pred             HHHHhcccCCCCCCCCHHHHHHHHHHHHHh
Confidence            99999754  56899999988887666553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.16  E-value=2e-10  Score=111.59  Aligned_cols=102  Identities=16%  Similarity=0.006  Sum_probs=79.3

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..+.+.|++++|+..|+++++++|+ ++.++.++|.+|..+|++++|+..++++++.+|++..+++.+|.+
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a  361 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA  361 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            3445667777777778888888888888888887 777788888888888888888888888888888777777777777


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +..+|++++|++.|+++++++|+
T Consensus       362 l~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        362 LLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhChh
Confidence            88888888888888888877776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.15  E-value=3.9e-10  Score=92.97  Aligned_cols=99  Identities=16%  Similarity=0.033  Sum_probs=93.6

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ..+..+|..+++.|+|.+|+..++++..++|+ +..+|.-+|.+|.+.|++++|-..|.+|+++.|+.+....++|..|+
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~  179 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL  179 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence            34555899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhhcccc
Q 019475          316 SLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~~  335 (340)
                      ..|+++.|...+..+...-+
T Consensus       180 L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         180 LRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HcCCHHHHHHHHHHHHhCCC
Confidence            99999999999999876554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.12  E-value=4.5e-10  Score=111.32  Aligned_cols=135  Identities=11%  Similarity=0.007  Sum_probs=109.1

Q ss_pred             hhHHHHHhhcCccccchhhchhhhhhhhHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHH
Q 019475          202 TAIHEILEGMGYKDDEGIANELSFQMWTSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL  281 (340)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~  281 (340)
                      .++.+-+.-.....+...+..............+..+...|..+...|++++|+..|+++++++|. ++.++.++|.++.
T Consensus        16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~   94 (765)
T PRK10049         16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLA   94 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            344444444444444433333322222223333445888899999999999999999999999999 9999999999999


Q ss_pred             hcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          282 MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       282 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ..|++++|+..++++++.+|+++. ++.+|.++..+|++++|+..|+++++++|+..
T Consensus        95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~  150 (765)
T PRK10049         95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ  150 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999 99999999999999999999999999999753

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.12  E-value=6.3e-10  Score=93.61  Aligned_cols=100  Identities=17%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCC--CCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ..+...|..++..|++++|+..|.+++...  +. ....+.++|.++...|++++|+..++++++.+|++..+++.+|.+
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  178 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ-PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL  178 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            356677888899999999999999999854  44 677899999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +...|++++|+..+++++++.|.
T Consensus       179 ~~~~~~~~~A~~~~~~~~~~~~~  201 (234)
T TIGR02521       179 YYLRGQYKDARAYLERYQQTYNQ  201 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999988554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.12  E-value=4.1e-10  Score=112.64  Aligned_cols=93  Identities=15%  Similarity=0.122  Sum_probs=86.0

Q ss_pred             HHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHH
Q 019475          244 TAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDA  323 (340)
Q Consensus       244 ~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A  323 (340)
                      .....|++++|+..|+++++++|+  +.+|+++|.++.++|++++|+..++++++++|+++.+++++|.++..+|++++|
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            334459999999999999999996  789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccc
Q 019475          324 RETLKDGTNLEAKKN  338 (340)
Q Consensus       324 ~~~~~~al~l~~~~~  338 (340)
                      ++.|++|++++|...
T Consensus       663 i~~l~~AL~l~P~~~  677 (987)
T PRK09782        663 REMLERAHKGLPDDP  677 (987)
T ss_pred             HHHHHHHHHhCCCCH
Confidence            999999999999753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.11  E-value=2.4e-10  Score=88.34  Aligned_cols=81  Identities=12%  Similarity=-0.001  Sum_probs=78.0

Q ss_pred             HHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          256 DCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       256 ~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      +.|.++++.+|+ +..+.+.+|.++...|++++|+..+++++.++|+++.+++++|.++..+|++++|+..|+++++++|
T Consensus         4 ~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         4 ATLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hhHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            468899999999 9999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q 019475          336 KK  337 (340)
Q Consensus       336 ~~  337 (340)
                      ..
T Consensus        83 ~~   84 (135)
T TIGR02552        83 DD   84 (135)
T ss_pred             CC
Confidence            74

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=4e-10  Score=99.46  Aligned_cols=96  Identities=10%  Similarity=0.036  Sum_probs=91.5

Q ss_pred             HhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChH
Q 019475          242 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEN  321 (340)
Q Consensus       242 g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~  321 (340)
                      ||=+.-+++++.|+..|++|+++||. ...+|.-+|.-|..+++-..|++.|++|++++|.+.+|||.+|++|..++...
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            55566678999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccc
Q 019475          322 DARETLKDGTNLEAKKN  338 (340)
Q Consensus       322 ~A~~~~~~al~l~~~~~  338 (340)
                      =|+-.|++|+++-|++.
T Consensus       416 YaLyYfqkA~~~kPnDs  432 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDS  432 (559)
T ss_pred             HHHHHHHHHHhcCCCch
Confidence            99999999999998864

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=8.8e-10  Score=93.18  Aligned_cols=109  Identities=17%  Similarity=0.077  Sum_probs=100.5

Q ss_pred             hHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcC---ChHHHHHHHHhhhhhCCCchH
Q 019475          229 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVSPDWPT  305 (340)
Q Consensus       229 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~l~p~~~~  305 (340)
                      ..++.+++.|.-.|..++..|++..|...|++|+++.|+ |+.++...|.++..+.   .-.+|...+++++++||++..
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir  228 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR  228 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence            345667889999999999999999999999999999999 9999999999887763   478899999999999999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +.+.+|..+++.|+|.+|+..++..|++.|.+.
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999999988754

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.06  E-value=5.2e-11  Score=110.53  Aligned_cols=146  Identities=23%  Similarity=0.345  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCc-------------ccCCccCCccccccC
Q 019475           10 ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY-------------STNLAFTPPEYMRTG   76 (340)
Q Consensus        10 ~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-------------~~~~~y~aPE~~~~~   76 (340)
                      +.++++|+.|+|...++||++|.|++|.++..|..||+.|+++........+             .....|.+||++.+.
T Consensus       105 l~~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~  184 (700)
T KOG2137|consen  105 LGNVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGT  184 (700)
T ss_pred             hhcccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhccc
Confidence            4456689999999977999999999999999999999999987654432111             124579999999998


Q ss_pred             CCCCccchhhHHHHHHHHH-hCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLL-SGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ..++++|+||+||++|.+. .|+..+.......  ...+.......-....+...+.++.+=+.+++..++..||++.++
T Consensus       185 ~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~--~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l  262 (700)
T KOG2137|consen  185 TNTPASDVFSLGVLIYTIYNGGKSIIAANGGLL--SYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRPTLDLL  262 (700)
T ss_pred             cccccccceeeeeEEEEEecCCcchhhccCCcc--hhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCcchhhh
Confidence            8899999999999999998 4544332211111  111111111111222345677889999999999999999988776


Q ss_pred             HH
Q 019475          156 VI  157 (340)
Q Consensus       156 l~  157 (340)
                      ..
T Consensus       263 ~~  264 (700)
T KOG2137|consen  263 LS  264 (700)
T ss_pred             hc
Confidence            54

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.06  E-value=4.1e-10  Score=75.91  Aligned_cols=67  Identities=19%  Similarity=0.171  Sum_probs=59.3

Q ss_pred             HhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          245 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       245 ~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      +++.|+|++|+..|++++..+|+ +..+++.+|.||+++|++++|...+++++..+|+++..+.-++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            46789999999999999999999 99999999999999999999999999999999998777766654

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.06  E-value=7.5e-10  Score=75.76  Aligned_cols=68  Identities=24%  Similarity=0.324  Sum_probs=54.4

Q ss_pred             hHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          243 DTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       243 ~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ..+++.++|++|++.+++++.++|+ ++.+|..+|.+|..+|+|++|+++++++++..|++..+...++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            4567778888888888888888888 8888888888888888888888888888888888777665554

>PLN02789 farnesyltranstransferase

Probab=99.05  E-value=1.2e-09  Score=96.36  Aligned_cols=107  Identities=7%  Similarity=-0.098  Sum_probs=91.6

Q ss_pred             HHHHHHhHHHhHhHHhhcCC--HHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKD--FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  308 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~--~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  308 (340)
                      ..+....+..++..+.+.|+  +.+++.+++++|+.+|+ |..+|++|+.++..+|+|++|+++|+++|+++|++..||+
T Consensus       102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~  180 (320)
T PLN02789        102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN  180 (320)
T ss_pred             CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH
Confidence            33444456666666666665  37889999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc---CCh----HHHHHHHHHhhccccccc
Q 019475          309 LQAACLFSL---GME----NDARETLKDGTNLEAKKN  338 (340)
Q Consensus       309 ~~g~~~~~~---~~~----~~A~~~~~~al~l~~~~~  338 (340)
                      ++|.++..+   |++    +++++...++|+++|+..
T Consensus       181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~  217 (320)
T PLN02789        181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE  217 (320)
T ss_pred             HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc
Confidence            999999877   334    478888899999999753

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.04  E-value=5e-10  Score=89.60  Aligned_cols=104  Identities=12%  Similarity=-0.041  Sum_probs=99.1

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+.-++++|+-+-..|-+.-|...|++++.+.|+ -+.+++-+|.-+...|+|+.|.+.|+..+++||.+--|+.++|.+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            3567899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ++--|||+-|.+++.+--+-||+++
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCCh
Confidence            9999999999999999988888764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.04  E-value=3.2e-09  Score=80.50  Aligned_cols=103  Identities=11%  Similarity=0.113  Sum_probs=93.6

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC--ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchH---HHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT---ALYL  309 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~  309 (340)
                      ...+...|...++.|+|.+|++.|+....-.|..  ...+...++.+|++.++|++|+..+++=|+++|+++.   ++|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            4578889999999999999999999999988872  3578999999999999999999999999999998776   8999


Q ss_pred             HHHHHHhcCC---------------hHHHHHHHHHhhcccccc
Q 019475          310 QAACLFSLGM---------------ENDARETLKDGTNLEAKK  337 (340)
Q Consensus       310 ~g~~~~~~~~---------------~~~A~~~~~~al~l~~~~  337 (340)
                      +|.+++.+..               ..+|..+|++.++.-|+.
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            9999999988               899999999999888763

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.03  E-value=4.7e-10  Score=98.07  Aligned_cols=104  Identities=16%  Similarity=0.070  Sum_probs=87.6

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      +...+...|..+.+.|++++|++.|++|++++|+ +..+...++.++...|+++++.+.+....+..|+++..+..+|.+
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~  223 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA  223 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            4556788899999999999999999999999999 999999999999999999988888888877778888888889999


Q ss_pred             HHhcCChHHHHHHHHHhhccccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +..+|++++|+..|+++++.+|+++
T Consensus       224 ~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  224 YLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hcccccccccccccccccccccccc
Confidence            9999999999999999999888753

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.03  E-value=1.6e-09  Score=101.15  Aligned_cols=105  Identities=14%  Similarity=0.013  Sum_probs=98.4

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHH--HHHhhhhhCCCchHHHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALG--DAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al~l~p~~~~a~~~~  310 (340)
                      ..+..+..+|..+..+|++.+|.+.|..|+.++|+ +......+|.++...|+-.-|..  ....|+++||.+.++||.+
T Consensus       682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            34556788999999999999999999999999999 99999999999999999888888  8999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      |.++..+|+.++|.++|..|++|+++.+
T Consensus       761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  761 GEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999998743

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.02  E-value=7.7e-10  Score=75.68  Aligned_cols=63  Identities=30%  Similarity=0.359  Sum_probs=59.7

Q ss_pred             hhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          276 RCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       276 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +..+|+..++|++|++.+++++.++|+++.+++.+|.++..+|++++|+++|+++++++|+..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            356899999999999999999999999999999999999999999999999999999999754

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=4.9e-10  Score=101.12  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=92.6

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC------hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS------PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA  306 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a  306 (340)
                      .+...+.+.|..+|..+.|.+|+..|..+++.-+..+      ...+.|+|.+|.++++|++||..+++||.+.|.++..
T Consensus       412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~  491 (611)
T KOG1173|consen  412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST  491 (611)
T ss_pred             CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence            3344678889999999999999999999994433322      2459999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          307 LYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       307 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |-..|.+|..+|+++.|++.|.+||-++|..
T Consensus       492 ~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  492 HASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-12
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-12
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		7e-10
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-09
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-08
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-08
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-08
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		9e-08
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		1e-06
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		1e-06
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		3e-06
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		4e-06
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		5e-06
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		5e-06
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		5e-06
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		5e-06
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		6e-06
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		6e-06
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		6e-06
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		6e-06
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		6e-06
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		6e-06
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		6e-06
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		6e-06
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		6e-06
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		6e-06
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		6e-06
3g51_A	325	Structural Diversity Of The Active Conformation Of		7e-06
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		1e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-05
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		2e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		4e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		5e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		6e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		6e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		7e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		7e-05
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		7e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		7e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		7e-05
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		7e-05
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		8e-05
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		8e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		8e-05
4h58_A	275	Braf In Complex With Compound 3 Length = 275		8e-05
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		8e-05
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		8e-05
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		8e-05
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		8e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		9e-05
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		9e-05
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		9e-05
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		9e-05
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		9e-05
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		9e-05
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		1e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-04
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		1e-04
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		1e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		1e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		1e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		1e-04
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		2e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		2e-04
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		3e-04
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		3e-04
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		3e-04
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		4e-04
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		4e-04
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		6e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		6e-04
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		6e-04
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		6e-04
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		7e-04
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		7e-04
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		8e-04
1wao_1	477	Pp5 Structure Length = 477		8e-04
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 34/183 (18%)
Query: 1   MKWAMRLRVALYLAQALEY----CSSKGRALYHDLNAYRILFDKDGNPRLSSFGL----- 51
           + W  R R+AL  A+ L Y    C  K   ++ D+ A  IL D++    +  FGL     
Sbjct: 136 LDWPKRQRIALGSARGLAYLHDHCDPK--IIHRDVKAANILLDEEFEAVVGDFGLAKLMD 193
Query: 52  MKNSRDGKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR- 110
            K+     +    +    PEY+ TG+ + ++ V+ +G MLL+L++G+      A DL R 
Sbjct: 194 YKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQR-----AFDLARL 248
Query: 111 -----------------SKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK 153
                             K    L+D  L+G++ ++E  +L+++A  C QS   ERP   
Sbjct: 249 ANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMS 308
Query: 154 SLV 156
            +V
Sbjct: 309 EVV 311

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 24/178 (13%)
Query: 1   MKWAMRLRVALYLAQALEY----CSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK--- 53
           + W  R R+AL  A+ L Y    C  K   ++ D+ A  IL D++    +  FGL K   
Sbjct: 128 LDWPKRQRIALGSARGLAYLHDHCDPK--IIHRDVKAANILLDEEFEAVVGDFGLAKLMD 185
Query: 54  --NSRDGKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHAL----- 106
             +     +    +    PEY+ TG+ + ++ V+ +G MLL+L++G+       L     
Sbjct: 186 YKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD 245
Query: 107 --------DLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
                    L++ K    L+D  L+G++ ++E  +L+++A  C QS   ERP    +V
Sbjct: 246 VMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVV 303

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRD-G 58
           M W  RL + +  A+ L Y  +  RA+ H D+ +  IL D++  P+++ FG+ K   + G
Sbjct: 136 MSWEQRLEICIGAARGLHYLHT--RAIIHRDVKSINILLDENFVPKITDFGISKKGTELG 193
Query: 59  KSY-----STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGK 98
           +++        L +  PEY   GR+T +S VYSFG +L ++L  +
Sbjct: 194 QTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCAR 238

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRD-- 57
           M W  RL + +  A+ L Y  +  RA+ H D+ +  IL D++  P+++ FG+ K   +  
Sbjct: 136 MSWEQRLEICIGAARGLHYLHT--RAIIHRDVKSINILLDENFVPKITDFGISKKGTELD 193
Query: 58  ----GKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGK 98
                      L +  PEY   GR+T +S VYSFG +L ++L  +
Sbjct: 194 QTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCAR 238

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 27/175 (15%)
Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--- 57
           + W MR ++A   A  + +   +   ++ D+ +  IL D+    ++S FGL + S     
Sbjct: 130 LSWHMRCKIAQGAANGINFLH-ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 188
Query: 58  ---GKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
                      A+  PE +R G +TP+S +YSFG +LL++++G  +P   A+D  R    
Sbjct: 189 TVMXSRIVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITG--LP---AVDEHREPQL 242
Query: 115 LLLMDSA-----------LEGHFSNDEGTE---LVRLASRCLQSEARERPNAKSL 155
           LL +              ++   ++ + T    +  +AS+CL  +  +RP+ K +
Sbjct: 243 LLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKV 297

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 27/175 (15%)
Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--- 57
           + W MR ++A   A  + +   +   ++ D+ +  IL D+    ++S FGL + S     
Sbjct: 130 LSWHMRCKIAQGAANGINFLH-ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 188
Query: 58  ---GKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
                      A+  PE +R G +TP+S +YSFG +LL++++G  +P   A+D  R    
Sbjct: 189 TVMXXRIVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITG--LP---AVDEHREPQL 242
Query: 115 LLLMDSA-----------LEGHFSNDEGTE---LVRLASRCLQSEARERPNAKSL 155
           LL +              ++   ++ + T    +  +AS+CL  +  +RP+ K +
Sbjct: 243 LLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKV 297

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 27/175 (15%)
Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--- 57
           + W MR ++A   A  + +   +   ++ D+ +  IL D+    ++S FGL + S     
Sbjct: 124 LSWHMRCKIAQGAANGINFLH-ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 182
Query: 58  ---GKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
                      A+  PE +R G +TP+S +YSFG +LL++++G  +P   A+D  R    
Sbjct: 183 XVMXXRIVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITG--LP---AVDEHREPQL 236
Query: 115 LLLMDSA-----------LEGHFSNDEGTE---LVRLASRCLQSEARERPNAKSL 155
           LL +              ++   ++ + T    +  +AS+CL  +  +RP+ K +
Sbjct: 237 LLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKV 291

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 27/175 (15%)
Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--- 57
           + W  R ++A   A  + +   +   ++ D+ +  IL D+    ++S FGL + S     
Sbjct: 121 LSWHXRCKIAQGAANGINFLH-ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 179
Query: 58  ---GKSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
                      A+  PE +R G +TP+S +YSFG +LL++++G  +P   A+D  R    
Sbjct: 180 XVXXSRIVGTTAYXAPEALR-GEITPKSDIYSFGVVLLEIITG--LP---AVDEHREPQL 233
Query: 115 LLLMDSALEGHF----------SNDEGTELVR----LASRCLQSEARERPNAKSL 155
           LL +   +E              ND  +  V     +AS+CL  +  +RP+ K +
Sbjct: 234 LLDIKEEIEDEEKTIEDYIDKKXNDADSTSVEAXYSVASQCLHEKKNKRPDIKKV 288

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ +EY + + + ++ DL A   + D+    +++ FGL ++  D + YS       
Sbjct: 130 GLQVARGMEYLAEQ-KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHA 188
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +T  E ++T R T +S V+SFG +L +LL+ +  PP   +D     +FL      
Sbjct: 189 RLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLT-RGAPPYRHIDPFDLTHFLAQGRRL 247
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
            +  +  D    L ++  +C +++   RP  + LV
Sbjct: 248 PQPEYCPD---SLYQVMQQCWEADPAVRPTFRVLV 279

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QALE+  S  + ++ D+ +  IL   DG+ +L+ FG        +S  + +  TP    P
Sbjct: 128 QALEFLHS-NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAP 186
Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE 130
           E +      P+  ++S G M ++++ G+  PP    + +R+   L L+ +       N E
Sbjct: 187 EVVTRKAYGPKVDIWSLGIMAIEMIEGE--PPYLNENPLRA---LYLIATNGTPELQNPE 241
Query: 131 GTELV--RLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPL- 187
               +     +RCL+ +  +R +AK L                    IQH+     KPL 
Sbjct: 242 KLSAIFRDFLNRCLEMDVEKRGSAKEL--------------------IQHQFLKIAKPLS 281
Query: 188 SLTPL 192
           SLTPL
Sbjct: 282 SLTPL 286

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QALE+  S  + ++ D+ +  IL   DG+ +L+ FG        +S  + +  TP    P
Sbjct: 127 QALEFLHS-NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAP 185
Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE 130
           E +      P+  ++S G M ++++ G+  PP    + +R+   L L+ +       N E
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGE--PPYLNENPLRA---LYLIATNGTPELQNPE 240
Query: 131 GTELV--RLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPL- 187
               +     +RCL+ +  +R +AK L                    +QH+     KPL 
Sbjct: 241 KLSAIFRDFLNRCLEMDVEKRGSAKEL--------------------LQHQFLKIAKPLS 280
Query: 188 SLTPL 192
           SLTPL
Sbjct: 281 SLTPL 285

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QALE+  S  + ++ ++ +  IL   DG+ +L+ FG        +S  + +  TP    P
Sbjct: 128 QALEFLHS-NQVIHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 186
Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE 130
           E +      P+  ++S G M ++++ G+  PP    + +R+   L L+ +       N E
Sbjct: 187 EVVTRKAYGPKVDIWSLGIMAIEMIEGE--PPYLNENPLRA---LYLIATNGTPELQNPE 241
Query: 131 GTELV--RLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPL- 187
               +     +RCL+ +  +R +AK L                    IQH+     KPL 
Sbjct: 242 KLSAIFRDFLNRCLEMDVEKRGSAKEL--------------------IQHQFLKIAKPLS 281
Query: 188 SLTPL 192
           SLTPL
Sbjct: 282 SLTPL 286

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           R   Y A+    L++  SKG  +Y DL    IL DKDG+ +++ FG+ K +  G + +  
Sbjct: 120 RATFYAAEIILGLQFLHSKG-IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNE 178
Query: 65  LAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALD 107
              TP    PE +   +       +SFG +L ++L G+   P H  D
Sbjct: 179 FCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ--SPFHGQD 223

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ ++Y +SK + ++ DL A   + D+    +++ FGL ++  D + YS +     
Sbjct: 139 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 197
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +   E ++T + T +S V+SFG +L +L++ +  PP   ++      +LL     
Sbjct: 198 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVNTFDITVYLLQGRRL 256
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           L+  +  D    L  +  +C   +A  RP+   LV
Sbjct: 257 LQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELV 288

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 33/185 (17%)
Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QALE+  S  + ++ D+ +  IL   DG+ +L+ FG        +S  + +  TP    P
Sbjct: 127 QALEFLHS-NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAP 185
Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE 130
           E +      P+  ++S G M ++++ G+  PP    + +R+   L L+ +       N E
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGE--PPYLNENPLRA---LYLIATNGTPELQNPE 240
Query: 131 GTELV--RLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPL- 187
               +     +RCL  +  +R +AK L                    +QH+     KPL 
Sbjct: 241 KLSAIFRDFLNRCLDMDVEKRGSAKEL--------------------LQHQFLKIAKPLS 280
Query: 188 SLTPL 192
           SLTPL
Sbjct: 281 SLTPL 285

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 33/185 (17%)
Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QALE+  S  + ++ D+ +  IL   DG+ +L+ FG        +S  + +  TP    P
Sbjct: 127 QALEFLHS-NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 185
Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE 130
           E +      P+  ++S G M ++++ G+  PP    + +R+   L L+ +       N E
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGE--PPYLNENPLRA---LYLIATNGTPELQNPE 240
Query: 131 GTELV--RLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHETAPSTKPL- 187
               +     +RCL  +  +R +AK L                    +QH+     KPL 
Sbjct: 241 KLSAIFRDFLNRCLDMDVEKRGSAKEL--------------------LQHQFLKIAKPLS 280
Query: 188 SLTPL 192
           SLTPL
Sbjct: 281 SLTPL 285

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           R   Y A+    L++  SKG  +Y DL    IL DKDG+ +++ FG+ K +  G + +  
Sbjct: 119 RATFYAAEIILGLQFLHSKG-IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNX 177
Query: 65  LAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALD 107
              TP    PE +   +       +SFG +L ++L G+   P H  D
Sbjct: 178 FCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ--SPFHGQD 222

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ ++Y +SK + ++ DL A   + D+    +++ FGL ++  D + YS +     
Sbjct: 137 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 195
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +   E ++T + T +S V+SFG +L +L++ +  PP   ++      +LL     
Sbjct: 196 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVNTFDITVYLLQGRRL 254
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           L+  +  D    L  +  +C   +A  RP+   LV
Sbjct: 255 LQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELV 286

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ ++Y +SK + ++ DL A   + D+    +++ FGL ++  D + YS +     
Sbjct: 136 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 194
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +   E ++T + T +S V+SFG +L +L++ +  PP   ++      +LL     
Sbjct: 195 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVNTFDITVYLLQGRRL 253
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           L+  +  D    L  +  +C   +A  RP+   LV
Sbjct: 254 LQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELV 285

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ ++Y +SK + ++ DL A   + D+    +++ FGL ++  D + YS +     
Sbjct: 131 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 189
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +   E ++T + T +S V+SFG +L +L++ +  PP   ++      +LL     
Sbjct: 190 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVNTFDITVYLLQGRRL 248
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           L+  +  D    L  +  +C   +A  RP+   LV
Sbjct: 249 LQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELV 280

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ ++Y +SK + ++ DL A   + D+    +++ FGL ++  D + YS +     
Sbjct: 139 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 197
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +   E ++T + T +S V+SFG +L +L++ +  PP   ++      +LL     
Sbjct: 198 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVNTFDITVYLLQGRRL 256
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           L+  +  D    L  +  +C   +A  RP+   LV
Sbjct: 257 LQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELV 288

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ ++Y +SK + ++ DL A   + D+    +++ FGL ++  D + YS +     
Sbjct: 138 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 196
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +   E ++T + T +S V+SFG +L +L++ +  PP   ++      +LL     
Sbjct: 197 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVNTFDITVYLLQGRRL 255
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           L+  +  D    L  +  +C   +A  RP+   LV
Sbjct: 256 LQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELV 287

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ ++Y +SK + ++ DL A   + D+    +++ FGL ++  D + YS +     
Sbjct: 157 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 215
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +   E ++T + T +S V+SFG +L +L++ +  PP   ++      +LL     
Sbjct: 216 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVNTFDITVYLLQGRRL 274
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           L+  +  D    L  +  +C   +A  RP+   LV
Sbjct: 275 LQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELV 306

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 9   VALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SY 61
           V  YLA+   AL++  S G  +Y DL    IL D++G+ +L+ FGL K S D +    S+
Sbjct: 129 VKFYLAELALALDHLHSLG-IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSF 187
Query: 62  STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSG 97
              + +  PE +     T  +  +SFG ++ ++L+G
Sbjct: 188 CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 223

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ ++Y +SK + ++ DL A   + D+    +++ FGL ++  D + YS +     
Sbjct: 158 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 216
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +   E ++T + T +S V+SFG +L +L++ +  PP   ++      +LL     
Sbjct: 217 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVNTFDITVYLLQGRRL 275
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           L+  +  D    L  +  +C   +A  RP+   LV
Sbjct: 276 LQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELV 307

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 9   VALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SY 61
           V  YLA+   AL++  S G  +Y DL    IL D++G+ +L+ FGL K S D +    S+
Sbjct: 128 VKFYLAELALALDHLHSLG-IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSF 186
Query: 62  STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSG 97
              + +  PE +     T  +  +SFG ++ ++L+G
Sbjct: 187 CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 10  ALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN----- 64
            L +A+ ++Y +SK + ++ DL A   + D+    +++ FGL ++  D + YS +     
Sbjct: 134 GLQVAKGMKYLASK-KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 192
Query: 65  ---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA 121
              + +   E ++T + T +S V+SFG +L +L++ +  PP   ++      +LL     
Sbjct: 193 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT-RGAPPYPDVNTFDITVYLLQGRRL 251
Query: 122 LEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           L+  +  D    L  +  +C   +A  RP+   LV
Sbjct: 252 LQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELV 283

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 9   VALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SY 61
           V  YLA+   AL++  S G  +Y DL    IL D++G+ +L+ FGL K S D +    S+
Sbjct: 128 VKFYLAELALALDHLHSLG-IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSF 186
Query: 62  STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSG 97
              + +  PE +     T  +  +SFG ++ ++L+G
Sbjct: 187 CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 28/199 (14%)
Query: 8   RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAF 67
           ++ L   +AL +     + ++ D+    IL D+ GN +L  FG+     D  + + +   
Sbjct: 129 KITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGC 188
Query: 68  TPPEYMRTGRVTP---------ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM 118
            P  YM   R+ P          S V+S G  L +L +G+   P       +  +    +
Sbjct: 189 RP--YMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYP-------KWNSVFDQL 239
Query: 119 DSALEG---HFSNDEGTE----LVRLASRCLQSEARERPNAKSLV---ISLMSLQKEAEV 168
              ++G     SN E  E     +   + CL  +  +RP  K L+     LM  ++  EV
Sbjct: 240 TQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERAVEV 299
Query: 169 PSYVLLGIQHETAPSTKPL 187
             YV   +    A  + P+
Sbjct: 300 ACYVCKILDQMPATPSSPM 318

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST-NL 65
           L+ +L + +A+EY       ++ DL A  +L  +D   ++S FGL K +   +      +
Sbjct: 105 LKFSLDVCEAMEYLEGNN-FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 163
Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP 101
            +T PE +R  + + +S V+SFG +L ++ S   +P
Sbjct: 164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 199

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST-NL 65
           L+ +L + +A+EY       ++ DL A  +L  +D   ++S FGL K +   +      +
Sbjct: 120 LKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 178
Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP 101
            +T PE +R  + + +S V+SFG +L ++ S   +P
Sbjct: 179 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 214

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP--- 69
           + + L+Y  S+ R ++ D+ A  +L  + G+ +L+ FG+     D +        TP   
Sbjct: 125 ILKGLDYLHSE-RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFVGTPFWM 183
Query: 70  -PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHF 126
            PE ++      ++ ++S G   ++L  G+  PP+  L  +R   FL+  +S   LEG  
Sbjct: 184 APEVIKQSAYDFKADIWSLGITAIELAKGE--PPNSDLHPMRVL-FLIPKNSPPTLEGQH 240
Query: 127 SNDEGTELVRLASRCLQSEARERPNAKSLV 156
           S             CL  + R RP AK L+
Sbjct: 241 SK----PFKEFVEACLNKDPRFRPTAKELL 266

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST-NL 65
           L+ +L + +A+EY       ++ DL A  +L  +D   ++S FGL K +   +      +
Sbjct: 292 LKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 350
Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP 101
            +T PE +R  + + +S V+SFG +L ++ S   +P
Sbjct: 351 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVP 386

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST-NL 65
           L+ +L + +A+EY       ++ DL A  +L  +D   ++S FGL K +   +      +
Sbjct: 111 LKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV 169
Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP 101
            +T PE +R    + +S V+SFG +L ++ S   +P
Sbjct: 170 KWTAPEALREAAFSTKSDVWSFGILLWEIYSFGRVP 205

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 30/168 (17%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST-----NLAF 67
           + +A+EY  SK + L+ DL A   L +  G  ++S FGL +   D +  S+      + +
Sbjct: 129 VCEAMEYLESK-QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSKFPVRW 187
Query: 68  TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS 127
           +PPE +   + + +S +++FG ++ ++ S   +P            +    +S    H +
Sbjct: 188 SPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP------------YERFTNSETAEHIA 235
Query: 128 NDEGTELVR--LASR--------CLQSEARERPNAKSLVISLMSLQKE 165
             +G  L R  LAS         C   +A ERP  K L+ +++ +  E
Sbjct: 236 --QGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 6   RLRVALYL------AQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK 59
           RLRV   L      A  +EY  SK   ++ DL A   L  +    ++S FG+ +   DG 
Sbjct: 209 RLRVKTLLQMVGDAAAGMEYLESKC-CIHRDLAARNCLVTEKNVLKISDFGMSREEADGV 267
Query: 60  SYSTN------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
             ++       + +T PE +  GR + ES V+SFG +L +  S     P   L   +++ 
Sbjct: 268 XAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFS-LGASPYPNLSNQQTRE 326
Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK 164
           F+             D    + RL  +C   E  +RP+  ++   L S++K
Sbjct: 327 FVEKGGRLPCPELCPD---AVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK 374

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 30/168 (17%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN-----LAF 67
           + +A+EY  SK + L+ DL A   L +  G  ++S FGL +   D +  S+      + +
Sbjct: 113 VCEAMEYLESK-QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 171
Query: 68  TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS 127
           +PPE +   + + +S +++FG ++ ++ S   +P            +    +S    H +
Sbjct: 172 SPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP------------YERFTNSETAEHIA 219
Query: 128 NDEGTELVR--LASR--------CLQSEARERPNAKSLVISLMSLQKE 165
             +G  L R  LAS         C   +A ERP  K L+ +++ +  E
Sbjct: 220 --QGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 265

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 30/168 (17%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN-----LAF 67
           + +A+EY  SK + L+ DL A   L +  G  ++S FGL +   D +  S+      + +
Sbjct: 114 VCEAMEYLESK-QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 172
Query: 68  TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS 127
           +PPE +   + + +S +++FG ++ ++ S   +P            +    +S    H +
Sbjct: 173 SPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP------------YERFTNSETAEHIA 220
Query: 128 NDEGTELVR--LASR--------CLQSEARERPNAKSLVISLMSLQKE 165
             +G  L R  LAS         C   +A ERP  K L+ +++ +  E
Sbjct: 221 --QGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 266

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 30/168 (17%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST-----NLAF 67
           + +A+EY  SK + L+ DL A   L +  G  ++S FGL +   D +  S+      + +
Sbjct: 129 VCEAMEYLESK-QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 187
Query: 68  TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS 127
           +PPE +   + + +S +++FG ++ ++ S   +P            +    +S    H +
Sbjct: 188 SPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP------------YERFTNSETAEHIA 235
Query: 128 NDEGTELVR--LASR--------CLQSEARERPNAKSLVISLMSLQKE 165
             +G  L R  LAS         C   +A ERP  K L+ +++ +  E
Sbjct: 236 --QGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 24/160 (15%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL-MKNSRDGKSY---- 61
           + +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL  + SR   S+    
Sbjct: 107 IDIARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQ 165
Query: 62  -STNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
            S ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ 
Sbjct: 166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIF 220
Query: 118 MDSALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
           M     G+ S D           + RL + CL+ +  ERP
Sbjct: 221 MVG--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 258

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 30/168 (17%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN-----LAF 67
           + +A+EY  SK + L+ DL A   L +  G  ++S FGL +   D +  S+      + +
Sbjct: 109 VCEAMEYLESK-QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 167
Query: 68  TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS 127
           +PPE +   + + +S +++FG ++ ++ S   +P            +    +S    H +
Sbjct: 168 SPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP------------YERFTNSETAEHIA 215
Query: 128 NDEGTELVR--LASR--------CLQSEARERPNAKSLVISLMSLQKE 165
             +G  L R  LAS         C   +A ERP  K L+ +++ +  E
Sbjct: 216 --QGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 261

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 32/169 (18%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLA------ 66
           + +A+EY  SK + L+ DL A   L +  G  ++S FGL +   D + Y++++       
Sbjct: 120 VCEAMEYLESK-QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YTSSVGSKFPVR 177
Query: 67  FTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHF 126
           ++PPE +   + + +S +++FG ++ ++ S   +P            +    +S    H 
Sbjct: 178 WSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP------------YERFTNSETAEHI 225
Query: 127 SNDEGTELVR--LASR--------CLQSEARERPNAKSLVISLMSLQKE 165
           +  +G  L R  LAS         C   +A ERP  K L+ +++ +  E
Sbjct: 226 A--QGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 272

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 24/175 (13%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL-MKNSRDGKSY---- 61
           + +A   A+ ++Y  +K   ++ DL +  I   +D   ++  FGL  + SR   S+    
Sbjct: 123 IDIARQTARGMDYLHAKS-IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQ 181
Query: 62  -STNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
            S ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ 
Sbjct: 182 LSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIE 236
Query: 118 MDSALEGHFSNDEGT-------ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
           M     G  S D           + RL + CL+ +  ERP+   ++  +  L +E
Sbjct: 237 M--VGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELARE 289

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL------MKNSRDGKS 60
           + +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL         S   + 
Sbjct: 107 IDIARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 165
Query: 61  YSTNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
            S ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ 
Sbjct: 166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIF 220
Query: 118 MDSALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
           M     G+ S D           + RL + CL+ +  ERP
Sbjct: 221 MVG--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 258

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL-MKNSRDGKSY-----S 62
           +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL  + SR   S+     S
Sbjct: 129 IARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLS 187
Query: 63  TNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD 119
            ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ M 
Sbjct: 188 GSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIFMV 242
Query: 120 SALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
               G+ S D           + RL + CL+ +  ERP
Sbjct: 243 G--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 278

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 30/165 (18%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN-----LAF 67
           + +A+EY  SK + L+ DL A   L +  G  ++S FGL +   D +  S+      + +
Sbjct: 114 VCEAMEYLESK-QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSKFPVRW 172
Query: 68  TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS 127
           +PPE +   + + +S +++FG ++ ++ S   +P            +    +S    H +
Sbjct: 173 SPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP------------YERFTNSETAEHIA 220
Query: 128 NDEGTELVR--LASR--------CLQSEARERPNAKSLVISLMSL 162
             +G  L R  LAS         C   +A ERP  K L+ +++ +
Sbjct: 221 --QGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDV 263

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL------MKNSRDGKS 60
           + +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL         S   + 
Sbjct: 107 IDIARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 165
Query: 61  YSTNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
            S ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ 
Sbjct: 166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIF 220
Query: 118 MDSALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
           M     G+ S D           + RL + CL+ +  ERP
Sbjct: 221 MVG--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 258

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 24/175 (13%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL-MKNSRDGKSY---- 61
           + +A   A+ ++Y  +K   ++ DL +  I   +D   ++  FGL  + SR   S+    
Sbjct: 123 IDIARQTARGMDYLHAKS-IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQ 181
Query: 62  -STNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
            S ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ 
Sbjct: 182 LSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIE 236
Query: 118 MDSALEGHFSNDEGT-------ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
           M     G  S D           + RL + CL+ +  ERP+   ++  +  L +E
Sbjct: 237 M--VGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELARE 289

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL------MKNSRDGKS 60
           + +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL         S   + 
Sbjct: 112 IDIARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 170
Query: 61  YSTNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
            S ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ 
Sbjct: 171 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIF 225
Query: 118 MDSALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
           M     G+ S D           + RL + CL+ +  ERP
Sbjct: 226 MVG--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 263

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL-MKNSRDGKSY-----S 62
           +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL  + SR   S+     S
Sbjct: 137 IARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLS 195
Query: 63  TNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD 119
            ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ M 
Sbjct: 196 GSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIFMV 250
Query: 120 SALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
               G+ S D           + RL + CL+ +  ERP
Sbjct: 251 G--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 286

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 7   LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL------MKNSRDGKS 60
           + +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL         S   + 
Sbjct: 112 IDIARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ 170
Query: 61  YSTNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
            S ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ 
Sbjct: 171 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIF 225
Query: 118 MDSALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
           M     G+ S D           + RL + CL+ +  ERP
Sbjct: 226 MVG--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 263

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 6   RLRVALYL------AQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK 59
           RLRV   L      A  +EY  SK   ++ DL A   L  +    ++S FG+ +   DG 
Sbjct: 209 RLRVKTLLQMVGDAAAGMEYLESKC-CIHRDLAARNCLVTEKNVLKISDFGMSREEADGV 267
Query: 60  SYSTN------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
             ++       + +T PE +  GR + ES V+SFG +L +  S     P   L   +++ 
Sbjct: 268 YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFS-LGASPYPNLSNQQTRE 326
Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK 164
           F+             D    + RL  +C   E  +RP+  ++   L S++K
Sbjct: 327 FVEKGGRLPCPELCPD---AVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK 374

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL------MKNSRDGKSYS 62
           +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL         S   +  S
Sbjct: 111 IARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 169
Query: 63  TNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD 119
            ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ M 
Sbjct: 170 GSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIFMV 224
Query: 120 SALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
               G+ S D           + RL + CL+ +  ERP
Sbjct: 225 G--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 260

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL------MKNSRDGKSYS 62
           +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL         S   +  S
Sbjct: 137 IARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 195
Query: 63  TNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD 119
            ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ M 
Sbjct: 196 GSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIFMV 250
Query: 120 SALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
               G+ S D           + RL + CL+ +  ERP
Sbjct: 251 G--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 286

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL------MKNSRDGKSYS 62
           +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL         S   +  S
Sbjct: 136 IARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 194
Query: 63  TNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD 119
            ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+    I +++ ++ M 
Sbjct: 195 GSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ-LPYSN----INNRDQIIFMV 249
Query: 120 SALEGHFSNDEG-------TELVRLASRCLQSEARERP 150
               G+ S D           + RL + CL+ +  ERP
Sbjct: 250 G--RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 285

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 15/156 (9%)
Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL---------MKNSRDGKSYSTNL 65
           + LEY    G+ ++ D+ A  IL  +DG+ +++ FG+         +  ++  K++    
Sbjct: 127 EGLEYLHKNGQ-IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTP 185
Query: 66  AFTPPEYMRTGR-VTPESVVYSFGTMLLDLLSG----KHIPPSHALDLIRSKNFLLLMDS 120
            +  PE M   R    ++ ++SFG   ++L +G       PP   L L    +   L   
Sbjct: 186 CWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETG 245
Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
             +       G    ++ S CLQ +  +RP A  L+
Sbjct: 246 VQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELL 281

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           V L + QAL    ++G  ++ D+ +  IL   DG  +LS FG              L  T
Sbjct: 132 VCLAVLQALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 190
Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIR 110
           P    PE +      PE  ++S G M+++++ G+    + PP  A+ +IR
Sbjct: 191 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR 240

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           V L + QAL    ++G  ++ D+ +  IL   DG  +LS FG              L  T
Sbjct: 121 VCLAVLQALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 179
Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIR 110
           P    PE +      PE  ++S G M+++++ G+    + PP  A+ +IR
Sbjct: 180 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR 229

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL------MKNSRDGKSYS 62
           +A   A+ ++Y  +K   ++ DL +  I   +D   ++  FGL         S   +  S
Sbjct: 113 IARQTARGMDYLHAKS-IIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLS 171
Query: 63  TNLAFTPPEYMRTGRVTP---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD 119
            ++ +  PE +R     P   +S VY+FG +L +L++G+ +P S+  +  R +   ++  
Sbjct: 172 GSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ-LPYSNINN--RDQIIEMVGR 228
Query: 120 SALEGHFSNDEGT---ELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
            +L    S         + RL + CL+ +  ERP+   ++  +  L +E
Sbjct: 229 GSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELARE 277

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           V L + QAL    ++G  ++ D+ +  IL   DG  +LS FG              L  T
Sbjct: 130 VCLAVLQALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 188
Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIR 110
           P    PE +      PE  ++S G M+++++ G+    + PP  A+ +IR
Sbjct: 189 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR 238

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 15/156 (9%)
Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL---------MKNSRDGKSYSTNL 65
           + LEY    G+ ++ D+ A  IL  +DG+ +++ FG+         +  ++  K++    
Sbjct: 132 EGLEYLHKNGQ-IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTP 190
Query: 66  AFTPPEYMRTGR-VTPESVVYSFGTMLLDLLSG----KHIPPSHALDLIRSKNFLLLMDS 120
            +  PE M   R    ++ ++SFG   ++L +G       PP   L L    +   L   
Sbjct: 191 CWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETG 250
Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
             +       G    ++ S CLQ +  +RP A  L+
Sbjct: 251 VQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELL 286

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           V L + QAL    ++G  ++ D+ +  IL   DG  +LS FG              L  T
Sbjct: 125 VCLAVLQALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 183
Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIR 110
           P    PE +      PE  ++S G M+++++ G+    + PP  A+ +IR
Sbjct: 184 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR 233

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           V L + QAL    ++G  ++ D+ +  IL   DG  +LS FG              L  T
Sbjct: 252 VCLAVLQALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 310
Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIR 110
           P    PE +      PE  ++S G M+++++ G+    + PP  A+ +IR
Sbjct: 311 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR 360

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 9   VALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           V L + QAL    ++G  ++ D+ +  IL   DG  +LS FG              L  T
Sbjct: 175 VCLAVLQALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGT 233
Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIR 110
           P    PE +      PE  ++S G M+++++ G+    + PP  A+ +IR
Sbjct: 234 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR 283

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 4   AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY-- 61
           A  L  A  + + + Y  S+   ++ +L A  +L D D   ++  FGL K   +G  Y  
Sbjct: 117 AQLLLFAQQICEGMAYLHSQ-HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR 175
Query: 62  -----STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLS---GKHIPPSHALDLI---R 110
                 + + +  PE ++  +    S V+SFG  L +LL+       PP+  L+LI   +
Sbjct: 176 VREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQ 235
Query: 111 SKNFLLLMDSALEGH----FSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
            +  +L +   LE        +    E+  L   C ++EA  RP  ++L+  L ++ ++
Sbjct: 236 GQMTVLRLTELLERGERLPRPDKCPCEVYHLMKNCWETEASFRPTFENLIPILKTVHEK 294

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 16  ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----PE 71
           ALEY  SK   +Y DL    IL DK+G+ +++ FG  K   D    +  L  TP    PE
Sbjct: 118 ALEYLHSKD-IIYRDLKPENILLDKNGHIKITDFGFAKYVPD---VTYXLCGTPDYIAPE 173
Query: 72  YMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEG 131
            + T         +SFG ++ ++L+G    P +  + +++   +L  +      F+ D  
Sbjct: 174 VVSTKPYNKSIDWWSFGILIYEMLAG--YTPFYDSNTMKTYEKILNAELRFPPFFNEDVK 231
Query: 132 TELVRLASRCL 142
             L RL +R L
Sbjct: 232 DLLSRLITRDL 242

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP--- 69
           +  A++YC  K R ++ DL A  +L D D N +++ FG       G    T     P   
Sbjct: 120 IVSAVQYCHQK-RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDTFCGSPPYAA 178
Query: 70  PEYMRTGRVT-PESVVYSFGTMLLDLLSG 97
           PE  +  +   PE  V+S G +L  L+SG
Sbjct: 179 PELFQGKKYDGPEVDVWSLGVILYTLVSG 207

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS-RDG---KSYSTNLAFT 68
           +  AL+Y  S+   +Y DL    ++ DKDG+ +++ FGL K   +DG   K++     + 
Sbjct: 257 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYL 316
Query: 69  PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-LLLMDSALEGHFS 127
            PE +           +  G ++ +++ G+   P +  D    K F L+LM+   E  F 
Sbjct: 317 APEVLEDNDYGRAVDWWGLGVVMYEMMCGR--LPFYNQD--HEKLFELILME---EIRFP 369
Query: 128 NDEGTELVRLASRCLQSEARER 149
              G E   L S  L+ + ++R
Sbjct: 370 RTLGPEAKSLLSGLLKKDPKQR 391

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 4   AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY-- 61
           A  L  A  + + + Y  ++   ++ +L A  +L D D   ++  FGL K   +G  Y  
Sbjct: 117 AQLLLFAQQICEGMAYLHAQ-HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR 175
Query: 62  -----STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLS---GKHIPPSHALDLI---R 110
                 + + +  PE ++  +    S V+SFG  L +LL+       PP+  L+LI   +
Sbjct: 176 VREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQ 235
Query: 111 SKNFLLLMDSALEGH----FSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
            +  +L +   LE        +    E+  L   C ++EA  RP  ++L+  L ++ ++
Sbjct: 236 GQMTVLRLTELLERGERLPRPDKCPCEVYHLMKNCWETEASFRPTFENLIPILKTVHEK 294

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 9   VALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SY 61
           V  YLA+    L++  S G  +Y DL    IL D++G+ +L+ FGL K + D +    S+
Sbjct: 132 VKFYLAELALGLDHLHSLG-IIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSF 190
Query: 62  STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSG 97
              + +  PE +     +  +  +S+G ++ ++L+G
Sbjct: 191 CGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTG 226

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS-RDG---KSYSTNLAFT 68
           +  AL+Y  S+   +Y DL    ++ DKDG+ +++ FGL K   +DG   K++     + 
Sbjct: 260 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYL 319
Query: 69  PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-LLLMDSALEGHFS 127
            PE +           +  G ++ +++ G+   P +  D    K F L+LM+   E  F 
Sbjct: 320 APEVLEDNDYGRAVDWWGLGVVMYEMMCGR--LPFYNQD--HEKLFELILME---EIRFP 372
Query: 128 NDEGTELVRLASRCLQSEARER 149
              G E   L S  L+ + ++R
Sbjct: 373 RTLGPEAKSLLSGLLKKDPKQR 394

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 295
           K   +  F+AKD+  AI  Y+Q I+    ++P+    Y  R L+YL  +    ALGDA +
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 296 AQVVSPDWPTALYLQAACLFSLG 318
           A  +   +    Y +AA   +LG
Sbjct: 73  AIELDKKYIKGYYRRAASNMALG 95

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 20/186 (10%)
Query: 4   AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY-- 61
           A  L  A  + + + Y  ++   ++ DL A  +L D D   ++  FGL K   +G     
Sbjct: 134 AQLLLFAQQICEGMAYLHAQ-HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYR 192
Query: 62  -----STNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLS---GKHIPPSHALDLI---R 110
                 + + +  PE ++  +    S V+SFG  L +LL+       PP+  L+LI   +
Sbjct: 193 VREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQ 252
Query: 111 SKNFLLLMDSALEGH----FSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK-- 164
            +  +L +   LE        +    E+  L   C ++EA  RP  ++L+  L ++ +  
Sbjct: 253 GQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKY 312
Query: 165 EAEVPS 170
           + + PS
Sbjct: 313 QGQAPS 318

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 8   RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAF 67
           ++A+ + +ALE+  SK   ++ D+    +L +  G  ++  FG+     D  + + +   
Sbjct: 157 KIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGC 216
Query: 68  TPPEYMRTGRVTPE---------SVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM 118
            P  YM   R+ PE         S ++S G  +++L   +    S      + K  +   
Sbjct: 217 KP--YMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEP 274
Query: 119 DSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
              L    ++    E V   S+CL+  ++ERP    L+
Sbjct: 275 SPQLP---ADKFSAEFVDFTSQCLKKNSKERPTYPELM 309

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS-RDG---KSYSTNLAFT 68
           +  AL+Y  S+   +Y DL    ++ DKDG+ +++ FGL K   +DG   K +     + 
Sbjct: 118 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYL 177
Query: 69  PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-LLLMDSALEGHFS 127
            PE +           +  G ++ +++ G+   P +  D    K F L+LM+   E  F 
Sbjct: 178 APEVLEDNDYGRAVDWWGLGVVMYEMMCGR--LPFYNQD--HEKLFELILME---EIRFP 230
Query: 128 NDEGTELVRLASRCLQSEARER 149
              G E   L S  L+ + ++R
Sbjct: 231 RTLGPEAKSLLSGLLKKDPKQR 252

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS-RDG---KSYSTNLAFT 68
           +  AL+Y  S+   +Y DL    ++ DKDG+ +++ FGL K   +DG   K +     + 
Sbjct: 119 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYL 178
Query: 69  PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-LLLMDSALEGHFS 127
            PE +           +  G ++ +++ G+   P +  D    K F L+LM+   E  F 
Sbjct: 179 APEVLEDNDYGRAVDWWGLGVVMYEMMCGR--LPFYNQD--HEKLFELILME---EIRFP 231
Query: 128 NDEGTELVRLASRCLQSEARER 149
              G E   L S  L+ + ++R
Sbjct: 232 RTLGPEAKSLLSGLLKKDPKQR 253

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS-RDG---KSYSTNLAFT 68
           +  AL+Y  S+   +Y DL    ++ DKDG+ +++ FGL K   +DG   K +     + 
Sbjct: 117 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXFCGTPEYL 176
Query: 69  PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-LLLMDSALEGHFS 127
            PE +           +  G ++ +++ G+   P +  D    K F L+LM+   E  F 
Sbjct: 177 APEVLEDNDYGRAVDWWGLGVVMYEMMCGR--LPFYNQD--HEKLFELILME---EIRFP 229
Query: 128 NDEGTELVRLASRCLQSEARER 149
              G E   L S  L+ + ++R
Sbjct: 230 RTLGPEAKSLLSGLLKKDPKQR 251

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK-------NSRDGKSYSTNL 65
           +A+ + +   +   ++ DL A  IL       +++ FGL +        +R+G  +   +
Sbjct: 120 IAEGMAFIEQRN-YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFP--I 176
Query: 66  AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP-PSHA-LDLIRSKNFLLLMDSALE 123
            +T PE +  G  T +S V+SFG +L+++++   IP P  +  ++IR+      ++    
Sbjct: 177 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRA------LERGYR 230
Query: 124 GHFSNDEGTELVRLASRCLQSEARERP 150
                +   EL  +  RC ++   ERP
Sbjct: 231 MPRPENCPEELYNIMMRCWKNRPEERP 257

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 295
           K   +  F+AKD+  AI  Y+Q I+    ++P+    Y  R L+YL  +    ALGDA +
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 296 AQVVSPDWPTALYLQAACLFSLG 318
           A  +   +    Y +AA   +LG
Sbjct: 66  AIELDKKYIKGYYRRAASNMALG 88

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTP 69
           +  A++YC  K R ++ DL A  +L D D N +++ FG       G    ++     +  
Sbjct: 123 IVSAVQYCHQK-RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAA 181
Query: 70  PEYMRTGRVT-PESVVYSFGTMLLDLLSG 97
           PE  +  +   PE  V+S G +L  L+SG
Sbjct: 182 PELFQGKKYDGPEVDVWSLGVILYTLVSG 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-27
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	9e-27
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-25
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-13
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-12
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-12
3soc_A	322	Activin receptor type-2A; structural genomics cons	6e-12
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-11
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-11
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	6e-11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-10
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-10
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-10
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	9e-10
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-09
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-09
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-08
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-08
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-05
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	5e-08
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-07
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-07
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	4e-07
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-06
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	4e-06
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-06
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	8e-06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-05
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-05
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	3e-05
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-05
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-05
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-05
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	5e-05
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	5e-05
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	7e-05
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	7e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-05
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	8e-05
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	8e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	9e-05
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-04
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-04
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-04
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-04
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-04
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-04
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	4e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	4e-04
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	4e-04
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	5e-04
3fme_A	290	Dual specificity mitogen-activated protein kinase;	6e-04
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	6e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	7e-04
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	7e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  108 bits (273), Expect = 2e-27
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 20/170 (11%)

Query: 1   MKWAMRLRVALYLAQALEY--CSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG 58
           + W  R R+AL  A+ L Y       + ++ D+ A  IL D++    +  FGL K     
Sbjct: 128 LDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYK 187

Query: 59  KSY-STNLAFT----PPEYMRTGRVTPESVVYSFGTMLLDLLSGK-----HIPP------ 102
            ++ +T +  T     PEY+ TG+ + ++ V+ +G MLL+L++G+               
Sbjct: 188 DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVM 247

Query: 103 --SHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP 150
                  L++ K    L+D  L+G++ ++E  +L+++A  C QS   ERP
Sbjct: 248 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERP 297

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  106 bits (267), Expect = 9e-27
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYR------ILFDKDGNPRLSSFGLMK- 53
           + W MR ++A   A  + +       L+ + + +R      IL D+    ++S FGL + 
Sbjct: 130 LSWHMRCKIAQGAANGINF-------LHENHHIHRDIKSANILLDEAFTAKISDFGLARA 182

Query: 54  NSRDGKSY-STNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGK-----HIPPS 103
           + +  ++  ++ +  T     PE +  G +TP+S +YSFG +LL++++G      H  P 
Sbjct: 183 SEKFAQTVMTSRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQ 241

Query: 104 HALD-----LIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS 158
             LD         K     +D  +     +     +  +AS+CL  +  +RP+ K +   
Sbjct: 242 LLLDIKEEIEDEEKTIEDYIDKKMND-ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQL 300

Query: 159 LMSLQ 163
           L  + 
Sbjct: 301 LQEMT 305

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  103 bits (259), Expect = 1e-25
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 21/186 (11%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK-NSRDGK 59
           M W  RL + +  A+ L Y       ++ D+ +  IL D++  P+++ FG+ K  +   +
Sbjct: 136 MSWEQRLEICIGAARGLHYLH-TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQ 194

Query: 60  SY-STNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSH------ 104
           ++ ST +  T     PEY   GR+T +S VYSFG +L ++L  +       P        
Sbjct: 195 THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAE 254

Query: 105 -ALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL---M 160
            A++   +     ++D  L      +   +    A +CL   + +RP+   ++  L   +
Sbjct: 255 WAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL 314

Query: 161 SLQKEA 166
            LQ+  
Sbjct: 315 RLQESV 320

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 70.3 bits (173), Expect = 3e-15
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQE 288
           M++    K+ G+ A    +   A+ CY++ I     + P    +Y+ R  +Y      Q+
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQK 56

Query: 289 ALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 338
           A  D  +   + PDW      +AA L  L    +A+ T +     +  N + K+ 
Sbjct: 57  AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 295
           K  G+ A   K++S AID YTQ +     ++P      + R  +Y  +   ++A  DA  
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALS----IAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 296 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 334
           A VV P +  A        F +     A+E  + G   E
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 12/108 (11%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 295
           K   +  F+AKD+  AI  Y+Q I+    ++P+    Y  R L+YL  +    ALGDA +
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 296 AQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 338
           A  +   +    Y +AA   +LG    A    +        + +AK  
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 64.5 bits (158), Expect = 4e-13
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 295
           K  G+  F+  D+ TA+  Y + +       P    +Y+ R          Q AL D   
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDT 72

Query: 296 AQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 338
              +   +      +AACL ++   + A+   +     D +N EA++ 
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 295
           K  G+  F+  D+  A+  YT+ I      +P    +Y+ R   Y      Q AL D  +
Sbjct: 20  KNKGNECFQKGDYPQAMKHYTEAIK----RNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75

Query: 296 AQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 338
              + P +      +AA L ++     A +  +     D +  EA   
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 295
           K+ G+  F  + +  A  CY + I      +P V   Y  R L YL    P++AL D  +
Sbjct: 13  KEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRR 68

Query: 296 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           A  +      A +    C   +   ++A   L+   +L  ++  N
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 17/173 (9%)

Query: 3   WAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSY 61
              RL +A  +A+ + Y  ++   + H +L +  +L DK    ++  FGL +        
Sbjct: 136 ERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLS 195

Query: 62  STNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIRSKN 113
           S + A TP    PE +R      +S VYSFG +L +L + +    ++ P+  +  +  K 
Sbjct: 196 SKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKC 255

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA 166
             L            +   ++  +   C  +E  +RP+  +++  L  L K A
Sbjct: 256 KRL--------EIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA 300

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 295
           K+ G+  F  + +  A  CY + I      +P V   Y  R L YL    P++AL D  +
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 296 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNKN 340
           A  +      A +    C   +   ++A   L+   +L  ++  N
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQ 295
           K  G+   + ++F  A+  Y + I+    ++P     +  R  +Y        A+ D  +
Sbjct: 16  KTEGNEQMKVENFEAAVHFYGKAIE----LNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 296 AQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 338
           A  + P +  A       L SL    +A    K     D  N   K N
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 37/205 (18%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALY--------H-DLNAYRILFDKDGNPRLSSFGL 51
           + W     +A  +A+ L Y       L         H D+ +  +L   +    ++ FGL
Sbjct: 118 VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL 177

Query: 52  MKNSRDGKSYSTNLAFT------PPEYMRTGRVTPESV-----VYSFGTMLLDLLSGK-- 98
                 GKS               PE +               +Y+ G +L +L S    
Sbjct: 178 ALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTA 237

Query: 99  --------------HIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGT-ELVRLASRCLQ 143
                          I    +L+ ++           L  ++    G   L      C  
Sbjct: 238 ADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWD 297

Query: 144 SEARERPNAKSLVISLMSLQKEAEV 168
            +A  R +A  +   +  +Q+   +
Sbjct: 298 HDAEARLSAGCVGERITQMQRLTNI 322

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 20/179 (11%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGL--MKNSRD 57
            +    + +A   A+ ++Y  +K   + H DL +  I   +D   ++  FGL   K+   
Sbjct: 117 FEMKKLIDIARQTARGMDYLHAKS--IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS 174

Query: 58  GKSYSTNLAFTP----PEYMRTGRVTPESV---VYSFGTMLLDLLSGK----HIPPSHAL 106
           G      L+ +     PE +R     P S    VY+FG +L +L++G+    +I     +
Sbjct: 175 GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQI 234

Query: 107 DLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
             I       L     +   +  +   + RL + CL+ +  ERP+   ++  +  L +E
Sbjct: 235 --IEMVGRGSLSPDLSKVRSNCPK--RMKRLMAECLKKKRDERPSFPRILAEIEELARE 289

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 63.5 bits (154), Expect = 2e-11
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 35/209 (16%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DL---NAYRILFDKDGNPRLSSFGLMKNSR 56
           +    RL++ L + + L      G  L H  L   +   I+ D+ G   L+ F  +    
Sbjct: 208 LVHHARLQLTLQVIRLLASLHHYG--LVHTYLRPVD---IVLDQRGGVFLTGFEHLVRDG 262

Query: 57  DGKSYSTNLAFTPPEYM----------RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHAL 106
                     F PPE                +T     ++ G  +  +       P+   
Sbjct: 263 ASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCAD--LPNTDD 320

Query: 107 DLIRSKNFLLLMDSALEGHFSNDEGT--ELVRLASRCLQSEARERPNAKSLVISLMSLQK 164
             +             E  F + +     +  L    L+    +R      + +    Q 
Sbjct: 321 AAL----------GGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL 370

Query: 165 EAEVPSYV--LLGIQHETAPSTKPLSLTP 191
             E+ + +         T     P S T 
Sbjct: 371 RTELSAALPLYQTDGEPTREGGAPPSGTS 399

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 230 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEA 289
             ++     K   +  F+AKD+  AI  Y+Q I+     +   Y  R L+YL  +    A
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYA 59

Query: 290 LGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 328
           LGDA +A  +   +    Y +AA   +LG    A    +
Sbjct: 60  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 19/175 (10%)

Query: 1   MKWAMRLRVALYLAQALEYC-SSKGRALYH-DLNAYRILFDKDGN-PRLSSFGLMKNSRD 57
              A  +   L  +Q + Y  S + +AL H DL    +L    G   ++  FG    + D
Sbjct: 99  YTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGT---ACD 155

Query: 58  GKSYSTNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
            +++ TN   +     PE       + +  V+S+G +L ++++ +   P   +     + 
Sbjct: 156 IQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRK--PFDEIGGPAFR- 212

Query: 114 FLLLMDSALEGH---FSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
              +M +   G       +    +  L +RC   +  +RP+ + +V  +  L + 
Sbjct: 213 ---IMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRY 264

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFI--DGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA 296
           +K G+  F+  D+  A+  YTQ +  D        ++  R   +L  +   +A  +A +A
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91

Query: 297 QVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 338
                    ALY ++  L  LG  + A   L+     +  N   ++ 
Sbjct: 92  IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 27/173 (15%), Positives = 64/173 (36%), Gaps = 17/173 (9%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGK 59
           +  +  ++ AL +A+ + +  +    +    LN+  ++ D+D   R+S   + K S    
Sbjct: 108 VDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADV-KFSFQSP 166

Query: 60  SYSTNLAFTPPEYMRTGRVTPESV---VYSFGTMLLDLLSGK----HIPPSHALDLIRSK 112
                 A+  PE ++            ++SF  +L +L++ +     +        +  +
Sbjct: 167 GRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALE 226

Query: 113 NFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
                +   +  H S         L   C+  +  +RP    +V  L  +Q +
Sbjct: 227 GLRPTIPPGISPHVSK--------LMKICMNEDPAKRPKFDMIVPILEKMQDK 271

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 295
           +  G   F   D+  A+  YT+ I      +P     Y+ R  +        EA+ D  +
Sbjct: 8   RLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 296 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN 338
           A    P++  A   +A    ++     A ETL      +A+ N
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 58.5 bits (141), Expect = 9e-10
 Identities = 24/163 (14%), Positives = 43/163 (26%), Gaps = 15/163 (9%)

Query: 4   AMRLRVALYLAQALEYCSSKGRALYH-DL---NAYRILFDKDGNPRLSSFGL-MKNSRDG 58
                +   L +      SKG  L H      N   +    DG   L       K    G
Sbjct: 194 LALHILTAQLIRLAANLQSKG--LVHGHFTPDN---LFIMPDGRLMLGDVSALWKVGTRG 248

Query: 59  KSYSTNLAFTPPEYM--RTGRVTPESVVYSFGTMLLDLLSGK---HIPPSHALDLIRSKN 113
            + S  + + P E++   T   T     +  G  +  +        +         +  +
Sbjct: 249 PASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPS 308

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
             +    +L           +  L  R L  + R R      +
Sbjct: 309 LRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAM 351

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 34/185 (18%)

Query: 6   RLRVALYLAQALEYCSSKGRALYH-DL---NAYRILFDKDGNPRLSSFGLMKNSRDGKSY 61
           RL++ L + + L      G  L H  L   +   I+ D+ G   L+ F  +         
Sbjct: 208 RLQLTLQVIRLLASLHHYG--LVHTYLRPVD---IVLDQRGGVFLTGFEHLVRDGARVVS 262

Query: 62  STNLAFTPPEYM-----------RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR 110
           S +  F PPE             R   +T     ++ G ++  +       P      + 
Sbjct: 263 SVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD--LPITKDAALG 320

Query: 111 SKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV----ISLMSLQKEA 166
              ++         +        +  L    L+    +R      +       +  +  A
Sbjct: 321 GSEWIF----RSCKNIP----QPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTELSA 372

Query: 167 EVPSY 171
            +P Y
Sbjct: 373 ALPLY 377

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGL-------- 51
             W+ R+  A  +A  + Y  S    + H DLN++  L  ++ N  ++ FGL        
Sbjct: 105 YPWSQRVSFAKDIASGMAYLHSMN--IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK 162

Query: 52  ------MKNSRDGKSYSTNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP 101
                     +  +     +   P    PE +       +  V+SFG +L +++   +  
Sbjct: 163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNAD 222

Query: 102 PSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS 161
           P +   L R+ +F L +   L+ +   +       +  RC   +  +RP+   L   L +
Sbjct: 223 PDY---LPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLET 279

Query: 162 LQKEAE 167
           L+    
Sbjct: 280 LRMHLA 285

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQE 288
           M +    K+ G++ F+   +  A+ CY Q I       P     Y+ + ++ +      +
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQ 56

Query: 289 ALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG 330
           A+    Q    +        +++   + L +   A  +++  
Sbjct: 57  AIQMCQQGLRYTSTAEHV-AIRSKLQYRLELAQGAVGSVQIP 97

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL 290
           +  E    +     AF + D++ AI    + ++        +   R   ++    P++A+
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAI 197

Query: 291 GDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKN 338
            D   A  +  D   A Y  +   + LG    +   ++     D  +     +
Sbjct: 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 242 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP 301
           G     A   + A+  +   +DG    +   Y RR   +L     + AL D  +   +  
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91

Query: 302 DWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNK 339
           D+  A   +   L   G  ++A +  K     + +  E K+ +
Sbjct: 92  DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFID---GGTMVSPTVYARRCLSYLMNDMPQ 287
           Q+++     +  +   R   ++ A   Y   +         +     R C  +  ++ P 
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312

Query: 288 EALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 328
           EA+    +   + PD   AL  +A       M ++A +  +
Sbjct: 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 17/174 (9%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDG-----NPRLSSFGLMKN 54
           +KW+++LR+ L +A  +EY  ++   + H DL +  I             +++ FGL   
Sbjct: 119 IKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGL--- 175

Query: 55  SRDGKSYSTNLAFTP----PE--YMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDL 108
           S+      + L        PE         T ++  YSF  +L  +L+G+   P      
Sbjct: 176 SQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEG--PFDEYSY 233

Query: 109 IRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSL 162
            + K   ++ +  L      D    L  +   C   + ++RP+   +V  L  L
Sbjct: 234 GKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 8/145 (5%)

Query: 15  QALEYCSSKGRALYH-DLNAYRILFD-KDGNPRLSSFGLMKNSRDGKSYST--NLAFTPP 70
           + L++  ++   + H DL    I      G+ ++   GL    R   + +      F  P
Sbjct: 140 KGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAP 199

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDE 130
           E            VY+FG  +L++ + +   P           +  +        F    
Sbjct: 200 EMYEEK-YDESVDVYAFGMCMLEMATSE--YPYSECQNAAQ-IYRRVTSGVKPASFDKVA 255

Query: 131 GTELVRLASRCLQSEARERPNAKSL 155
             E+  +   C++    ER + K L
Sbjct: 256 IPEVKEIIEGCIRQNKDERYSIKDL 280

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 34/193 (17%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGL--MKNSRD 57
           +      ++A  + + + Y  +KG  + H DL +  + +D +G   ++ FGL  +     
Sbjct: 127 LDVNKTRQIAQEIVKGMGYLHAKG--ILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183

Query: 58  GKSYSTNLAFTP-------PEYMRTGRVTPESV---------VYSFGTMLLDLLSGK--- 98
                  L           PE +R      E           V++ GT+  +L + +   
Sbjct: 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPF 243

Query: 99  -HIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI 157
              P    +  +        +            G E+  +   C   E  ERP    L+ 
Sbjct: 244 KTQPAEAIIWQMG-TGMKPNLSQ-------IGMGKEISDILLFCWAFEQEERPTFTKLMD 295

Query: 158 SLMSLQKEAEVPS 170
            L  L K     S
Sbjct: 296 MLEKLPKRNRRLS 308

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL 290
           +  E    +     AF   D++ AI    + ++        +   R   ++    P++A+
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAI 174

Query: 291 GDAMQAQVVSPDWPTALYLQAACLFSLGMENDA----RETLK-DGTNLEAKKN 338
            D   A  +  D   A Y  +   + LG    +    RE LK D  +     +
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFID---GGTMVSPTVYARRCLSYLMNDMPQ 287
           Q+++     +  +   R   ++ A   Y   +         +     R C  +  ++ P 
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289

Query: 288 EALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNK 339
           EA+    +   + PD   AL  +A       M ++A +  +     +  + + ++  
Sbjct: 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 242 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLMNDMPQEALGDAMQAQV 298
           G     A   + A+  +   +DG     P     Y RR   +L     + AL D  +   
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65

Query: 299 VSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNK 339
           +  D+  A   +   L   G  ++A +  K     + +  E K+ +
Sbjct: 66  LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 26/163 (15%)

Query: 13  LAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP-- 69
           + +AL Y  S+G  + H DL    I  D+  N ++  FGL KN           +     
Sbjct: 125 ILEALSYIHSQG--IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPG 182

Query: 70  -----------PEYM------RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK 112
                        Y+       TG    +  +YS G +  +++     P S  ++ +   
Sbjct: 183 SSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY----PFSTGMERVNIL 238

Query: 113 NFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
             L  +       F +++     ++    +  +  +RP A++L
Sbjct: 239 KKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTL 281

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 33/166 (19%), Positives = 55/166 (33%), Gaps = 39/166 (23%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKN-SRDGKSYS- 62
           +V  YL     AL +  S+G  ++ D+    I     G  +L  FGL+      G     
Sbjct: 158 QVWGYLRDTLLALAHLHSQG-LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQ 216

Query: 63  --TNLAFTPPEYMRTGRVTPE---------SVVYSFGTMLLDLLSGKHIPPSHALDL--I 109
                    P YM      PE         + V+S G  +L++       P        +
Sbjct: 217 EGD------PRYM-----APELLQGSYGTAADVFSLGLTILEVACNME-LPHGGEGWQQL 264

Query: 110 RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
           R       +        S+    EL  +    L+ + + R  A++L
Sbjct: 265 RQGY----LPPEFTAGLSS----ELRSVLVMMLEPDPKLRATAEAL 302

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 25/161 (15%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           ++  +  Q   AL++   + + L+ D+ +  I   KDG  +L  FG+ +        +  
Sbjct: 126 QILDWFVQICLALKHVHDR-KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARA 184

Query: 65  LAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDL------IRSKNF 114
              TP    PE         +S +++ G +L +L + K      A  +      I S +F
Sbjct: 185 CIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLK--HAFEAGSMKNLVLKIISGSF 242

Query: 115 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
                  +  H+S     +L  L S+  +   R+RP+  S+
Sbjct: 243 -----PPVSLHYSY----DLRSLVSQLFKRNPRDRPSVNSI 274

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 30/181 (16%)

Query: 1   MKWAMRLRVALYLAQALEYC-SSKGRALYH-DLNAYRILFDKDGNPRLSS--------FG 50
           +   + +  A+ +A+ + Y        + H DL +  IL  +       S        FG
Sbjct: 102 IPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFG 161

Query: 51  LMKNSRD-GKSYSTNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGK----HIP 101
           L   +R+  ++   + A       PE +R    +  S V+S+G +L +LL+G+     I 
Sbjct: 162 L---AREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGID 218

Query: 102 PSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS 161
                  +      L + S               +L   C   +   RP+  +++  L +
Sbjct: 219 GLAVAYGVAMNKLALPIPSTCP--------EPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270

Query: 162 L 162
           +
Sbjct: 271 I 271

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 31/216 (14%), Positives = 59/216 (27%), Gaps = 47/216 (21%)

Query: 1   MKWAMRLRVALYLAQALEY-------CSSKGRALYH-DLNAYRILFDKDGNPRLSSFGL- 51
             W    R+A  + + L Y             A+ H DLN+  +L   DG   +S FGL 
Sbjct: 108 SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLS 167

Query: 52  -------MKNSRDGKSYSTNLAFTP----PEYMR-------TGRVTPESVVYSFGTMLLD 93
                  +    +  + + +   T     PE +              +  +Y+ G +  +
Sbjct: 168 MRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWE 227

Query: 94  LLSGK------HIPPSHAL---DLIRSKNFLLLMDSA---------LEGHFSNDEGT--E 133
           +             P + +     + +      M                +  +      
Sbjct: 228 IFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRS 287

Query: 134 LVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVP 169
           L      C   +A  R  A+     +  L    E  
Sbjct: 288 LKETIEDCWDQDAEARLTAQXAEERMAELMMIWERN 323

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 242 GDTAFRAKDFSTAIDCYTQFIDGGTMVSP--TVYARRCLSYLMNDMPQEALGDAMQAQVV 299
           G+  FR K +  AI  Y   ++    +      Y+     Y+     ++ +  + +A  +
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALE----LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68

Query: 300 SPDWPTALYLQAACLFSLGMENDARETLK 328
            PD+   L  +A+    LG   DA   L 
Sbjct: 69  KPDYSKVLLRRASANEGLGKFADAMFDLS 97

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 18/148 (12%)

Query: 13  LAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP-- 69
           + + ++Y  SK   L + DL    I        ++  FGL+ + ++    + +   T   
Sbjct: 131 ITKGVDYIHSKK--LINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKG-TLRY 187

Query: 70  --PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS 127
             PE + +     E  +Y+ G +L +LL         A +   SK F  L D  +   F 
Sbjct: 188 MSPEQISSQDYGKEVDLYALGLILAELLH----VCDTAFE--TSKFFTDLRDGIISDIFD 241

Query: 128 NDEGTELVRLASRCLQSEARERPNAKSL 155
                +   L  + L  +  +RPN   +
Sbjct: 242 K----KEKTLLQKLLSKKPEDRPNTSEI 265

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 30/162 (18%)

Query: 13  LAQALEYCSSKGRALYHDL---NAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP 69
           +A+A+E+  SKG  ++ DL   N   I F  D   ++  FGL+      +   T L   P
Sbjct: 173 IAEAVEFLHSKG-LMHRDLKPSN---IFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMP 228

Query: 70  PEYMRTGRV-TP---------------ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
                TG+V T                +  ++S G +L +LL             I +  
Sbjct: 229 AYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSF--STQMERVRIITD- 285

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
              + +      F+  +  +   +    L     ERP A  +
Sbjct: 286 ---VRNLKFPLLFT-QKYPQEHMMVQDMLSPSPTERPEATDI 323

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 16/149 (10%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST 63
           R A Y+ +   AL YC SK   + H D+    +L    G  +++ FG   ++   +    
Sbjct: 110 RTATYITELANALSYCHSKR--VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDL 167

Query: 64  --NLAFTPPEYMRTGRVTPESV-VYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
              L + PPE M  GR+  E V ++S G +  + L GK  PP  A     +   +  ++ 
Sbjct: 168 CGTLDYLPPE-MIEGRMHDEKVDLWSLGVLCYEFLVGK--PPFEANTYQETYKRISRVEF 224

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARER 149
                 +         L SR L+    +R
Sbjct: 225 TFPDFVTEG----ARDLISRLLKHNPSQR 249

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 19/154 (12%)

Query: 13  LAQALEYCSSKGRALYH----DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFT 68
           L  AL+ C  +    +     DL    +  D   N +L  FGL +      S++     T
Sbjct: 120 LTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGT 179

Query: 69  P----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG 124
           P    PE M       +S ++S G +L +L +    PP        + +   L     EG
Sbjct: 180 PYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALM--PP------FTAFSQKELAGKIREG 231

Query: 125 HF---SNDEGTELVRLASRCLQSEARERPNAKSL 155
            F         EL  + +R L  +   RP+ + +
Sbjct: 232 KFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEI 265

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 32/163 (19%)

Query: 13  LAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPE 71
           +A+A+E+  SKG  L H DL    I F  D   ++  FGL+      +   T L   P  
Sbjct: 127 IAEAVEFLHSKG--LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAY 184

Query: 72  YMRTGRV-TP---------------ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL 115
              TG+V T                +  ++S G +L +LL     P S  ++ +      
Sbjct: 185 ARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL----YPFSTQMERV------ 234

Query: 116 LLMDSALEGHFSNDEGT---ELVRLASRCLQSEARERPNAKSL 155
             +       F             +    L     ERP A ++
Sbjct: 235 RTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINI 277

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 9   VALYLAQ---ALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           V  Y  Q   ALE+  S+   + H D+    +     G  +L   GL +      + + +
Sbjct: 138 VWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS 195

Query: 65  LAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS 120
           L  TP    PE +       +S ++S G +L ++ + +   P +        N   L   
Sbjct: 196 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ--SPFYG----DKMNLYSLCKK 249

Query: 121 ALEGHF----SNDEGTELVRLASRCLQSEARERPNAKSL 155
             +  +    S+    EL +L + C+  +  +RP+   +
Sbjct: 250 IEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYV 288

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 19/117 (16%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 295
           K+ G+ A++ KDF TA+  Y +  +    + PT       +   Y       +      +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 296 A-------QVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNKN 340
           A       +        A        F      DA            T    KK + 
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 31/112 (27%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYS-- 62
            +  Y A+    LE+  ++   +Y DL    IL D+ G+ R+S  GL  +    K ++  
Sbjct: 293 DMRFYAAEIILGLEHMHNRF-VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASV 351

Query: 63  -TNLAFTPPEYMRTGRVTPESVVY-----------SFGTMLLDLLSGKHIPP 102
            T        YM      PE +             S G ML  LL G    P
Sbjct: 352 GT------HGYM-----APEVLQKGVAYDSSADWFSLGCMLFKLLRGH--SP 390

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 30/183 (16%), Positives = 54/183 (29%), Gaps = 28/183 (15%)

Query: 7   LRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNL 65
           L++     +A+++   +   + H DL    +L    G  +L  FG          YS + 
Sbjct: 139 LKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSA 198

Query: 66  A-----------FTPPEYM--------RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHAL 106
                        T P Y             +  +  +++ G +L  L   +H     A 
Sbjct: 199 QRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAK 258

Query: 107 DLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA 166
             I +  + +               T    L    LQ    ER +   +V  L  +    
Sbjct: 259 LRIVNGKYSIPPHD----TQY----TVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR 310

Query: 167 EVP 169
            V 
Sbjct: 311 NVN 313

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 27/110 (24%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           R   Y A+    LE    +   +Y DL    IL D  G+ R+S  GL  +  +G++    
Sbjct: 287 RAVFYAAEICCGLEDLHRER-IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKG- 344

Query: 65  LAF--TPPEYMRTGRVTPESVVY----------SFGTMLLDLLSGKHIPP 102
                T   YM      PE V            + G +L ++++G+   P
Sbjct: 345 --RVGT-VGYM-----APEVVKNERYTFSPDWWALGCLLYEMIAGQ--SP 384

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 12/102 (11%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST 63
           R A ++ +   AL YC  +   + H D+    +L    G  +++ FG   ++   +  + 
Sbjct: 115 RSATFMEELADALHYCHERK--VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTM 172

Query: 64  --NLAFTPPEYMRTGRVTPESV-VYSFGTMLLDLLSGKHIPP 102
              L + PPE M  G+   E V ++  G +  + L G   PP
Sbjct: 173 CGTLDYLPPE-MIEGKTHDEKVDLWCAGVLCYEFLVGM--PP 211

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 13  LAQALEYCSSKGRALYH-DLNAYRILF---DKDGNPR--LSSFGLMKNSRDGKSYSTNLA 66
               L +  S    + H DL  + IL    +  G  +  +S FGL K    G+   +  +
Sbjct: 127 TTSGLAHLHSLN--IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRS 184

Query: 67  F---TP----PEYMR---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL 116
               T     PE +        T    ++S G +   ++S    P   +L   R  N LL
Sbjct: 185 GVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ--RQANILL 242

Query: 117 LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK 153
              S    H    E      L  + +  + ++RP+AK
Sbjct: 243 GACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAK 279

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 19/117 (16%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTV---YARRCLSYLMNDMPQEALGDAMQ 295
           K  G+ A++ KDF  A   Y + I+    + P+    Y  +   Y       E +    +
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67

Query: 296 AQVVSPDWPT-------ALYLQAACLFSLGMENDARETLK-----DGTNLEAKKNKN 340
           A  V  +          A+             + A +               KK K 
Sbjct: 68  AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKE 124

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 32/207 (15%), Positives = 69/207 (33%), Gaps = 41/207 (19%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-------DLNAYRILFDKDGNPRLSSFGL-- 51
           +     L++A      L +  ++  +          DL +  IL  K+G   ++  GL  
Sbjct: 131 LDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 190

Query: 52  --MKNSRDGKSYSTNLAFTPPEYM-------RTGRVTPESV----VYSFGTMLLDLLSGK 98
             + ++ +          T   YM          R   +S     +YSFG +L ++    
Sbjct: 191 KFISDTNEVDIPPNTRVGTKR-YMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRC 249

Query: 99  HIPPSHALDLIRSKNFLLLMDSALE----------------GHFSNDEGT-ELVRLASRC 141
            +      +     + L+  D + E                  +S+DE   ++ +L + C
Sbjct: 250 -VSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTEC 308

Query: 142 LQSEARERPNAKSLVISLMSLQKEAEV 168
                  R  A  +  +L  + +  ++
Sbjct: 309 WAHNPASRLTALRVKKTLAKMSESQDI 335

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 46/214 (21%), Positives = 75/214 (35%), Gaps = 40/214 (18%)

Query: 13  LAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYST---NLAFT 68
           +  A++YC  K   + H DL A  +L D D N +++ FG       G           + 
Sbjct: 123 IVSAVQYCHQKR--IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYA 180

Query: 69  PPEYMRTGR--VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHF 126
            PE +  G+    PE  V+S G +L  L+SG  +P          +N   L +  L G +
Sbjct: 181 APE-LFQGKKYDGPEVDVWSLGVILYTLVSG-SLP-------FDGQNLKELRERVLRGKY 231

Query: 127 SNDEG--TELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYVLLGIQHE-TAPS 183
                  T+   L  R L     +R   + +                    ++       
Sbjct: 232 RIPFYMSTDCENLLKRFLVLNPIKRGTLEQI--------------------MKDRWINAG 271

Query: 184 TKPLSLTPLGEACSRLDLTAIHEILEGMGYKDDE 217
            +   L P  E    +      +I+ GMGY  +E
Sbjct: 272 HEEDELKPFVEPELDISDQKRIDIMVGMGYSQEE 305

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 15/155 (9%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL---MKNSRDGKSYSTNLAF--TP 69
           + LEY    G+ ++ D+ A  IL  +DG+ +++ FG+   +    D         F  TP
Sbjct: 132 EGLEYLHKNGQ-IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTP 190

Query: 70  ----PEYMRTGRVTPESV-VYSFGTMLLDLLSGK----HIPPSHALDLIRSKNFLLLMDS 120
               PE M   R       ++SFG   ++L +G       PP   L L    +   L   
Sbjct: 191 CWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETG 250

Query: 121 ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
             +       G    ++ S CLQ +  +RP A  L
Sbjct: 251 VQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAEL 285

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 27/111 (24%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK-NSRDGKSYST 63
           R   Y A+   AL+Y  S+   +Y DL    ++ DKDG+ +++ FGL K   +DG +  T
Sbjct: 249 RARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKT 308

Query: 64  NLAF--TPPEYMRTGRVTPESVVY----------SFGTMLLDLLSGKHIPP 102
              F  T PEY+      PE +              G ++ +++ G+   P
Sbjct: 309 ---FCGT-PEYL-----APEVLEDNDYGRAVDWWGLGVVMYEMMCGR--LP 348

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 1/87 (1%)

Query: 242 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP 301
           G   ++A  +  A   +              +           + ++AL       ++  
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 302 DWPTALYLQAACLFSLGMENDARETLK 328
           + P   +  A C   LG  + A     
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFY 110

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 242 GDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLMNDMPQEALGDAMQAQV 298
           G+  F AK+F+ AI  Y   I+    + P     Y+     Y+     ++ +    +A  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE----LDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87

Query: 299 VSPDWPTALYLQAACLFSLGMENDARETLK 328
           + PD   AL  +A+   SLG   DA   L 
Sbjct: 88  IKPDHSKALLRRASANESLGNFTDAMFDLS 117

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 31/160 (19%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
            V L++ +   AL+Y  ++   ++ D+    IL D+ G+  ++ F +          +T 
Sbjct: 116 TVKLFICELVMALDYLQNQR-IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITT- 173

Query: 65  LAFTPPEYMRTGRVTPESVV-------------YSFGTMLLDLLSGKHIPPSHALDLIRS 111
           +A T   YM      PE                +S G    +LL G+   P H      S
Sbjct: 174 MAGT-KPYM-----APEMFSSRKGAGYSFAVDWWSLGVTAYELLRGR--RPYHIRS---S 222

Query: 112 KNFLLLMDSALEG--HFSNDEGTELVRLASRCLQSEARER 149
            +   ++ +       + +    E+V L  + L+    +R
Sbjct: 223 TSSKEIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQR 262

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 22/108 (20%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
           R   Y AQ    LE+   +   +Y DL    +L D DGN R+S  GL    + G++ +  
Sbjct: 290 RAIFYTAQIVSGLEHLHQRN-IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKG 348

Query: 65  LAFTPPEYMRTGRVTPESVVY----------SFGTMLLDLLSGKHIPP 102
            A T P +M      PE ++           + G  L ++++ +   P
Sbjct: 349 YAGT-PGFM-----APELLLGEEYDFSVDYFALGVTLYEMIAAR--GP 388

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 15/111 (13%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQ---FIDGGTMVSP------------TVYARRCLSYLMN 283
           K+ G+  F+  + + AI  Y +   F                     +        Y  N
Sbjct: 42  KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101

Query: 284 DMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 334
               +A+  A +   +  +   ALY         G   +A+E L    +L 
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QAL Y  ++G  ++ D+ +  IL   DG  +LS FG             +L  TP    P
Sbjct: 152 QALAYLHAQGV-IHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAP 210

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIRSKNFLLLMDSALEGHF 126
           E +       E  ++S G M+++++ G+       P  A+  +R      L +S      
Sbjct: 211 EVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNS---HKV 267

Query: 127 SNDEGTELVRLASRCLQSEARERPNAKSL 155
           S      L     R L  + +ER  A+ L
Sbjct: 268 SP----VLRDFLERMLVRDPQERATAQEL 292

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 13/118 (11%), Positives = 38/118 (32%), Gaps = 14/118 (11%)

Query: 231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQ---FIDGGTMVSP-----------TVYARR 276
           +++++   K+ G   F+   +  A+  Y +   +++  +  S              +   
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202

Query: 277 CLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 334
            + +L       A+    +A  +  +    L  +     ++     AR   +    L 
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 22/122 (18%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQ---FIDGGTMVSP--------------TVYARRCLSYL 281
           ++ G+  F  KD+  AID Y      +D   +                  +YA     YL
Sbjct: 15  RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74

Query: 282 MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK-----DGTNLEAK 336
                 EA   + +          AL+ +A    +    ++A E LK             
Sbjct: 75  NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV 134

Query: 337 KN 338
             
Sbjct: 135 AR 136

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 18/149 (12%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           + L+Y  S+ + ++ D+ A  +L  + G  +L+ FG+     D +        TP    P
Sbjct: 130 KGLDYLHSEKK-IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAP 188

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIRSKNFLLLMDSALEGHF 126
           E ++      ++ ++S G   ++L  G+     + P   L LI  KN        LEG++
Sbjct: 189 EVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLI-PKN----NPPTLEGNY 243

Query: 127 SNDEGTELVRLASRCLQSEARERPNAKSL 155
           S      L      CL  E   RP AK L
Sbjct: 244 SK----PLKEFVEACLNKEPSFRPTAKEL 268

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 32/176 (18%)

Query: 13  LAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPE 71
           + + LE   +KG    H DL    IL   +G P L   G M  +      S         
Sbjct: 143 ICRGLEAIHAKG--YAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDW 200

Query: 72  YMRTG----------------RVTPESVVYSFGTMLLDLLSGKH-----IPPSHALDLIR 110
             +                   +   + V+S G +L  ++ G+           ++ L  
Sbjct: 201 AAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAV 260

Query: 111 SKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA 166
                +          S+     L +L +  +  +  +RP+   L+  L +LQ  A
Sbjct: 261 QNQLSIPQSP----RHSSA----LWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPA 308

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 25/164 (15%)

Query: 9   VALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNP-RLSSFGLMKNSRDGKSYSTN 64
              YL Q    LEY  ++   L+ D+ A  +L   DG+   L  FG     +      + 
Sbjct: 152 ALYYLGQALEGLEYLHTRR-ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSL 210

Query: 65  LAF-----TP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKH----IPPSHALDLIRS 111
           L       T     PE +       +  ++S   M+L +L+G H             I S
Sbjct: 211 LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIAS 270

Query: 112 KNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
           +   +     +    +     + ++     L+ E   R +A  L
Sbjct: 271 EPPPIR---EIPPSCA-PLTAQAIQ---EGLRKEPVHRASAMEL 307

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 6   RLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTN 64
            L++    A  +EY  SK     H DL A   L  +    ++S FG+ +   DG   ++ 
Sbjct: 215 LLQMVGDAAAGMEYLESKC--CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASG 272

Query: 65  LAF------TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP-----PSHALDLIRSKN 113
                    T PE +  GR + ES V+SFG +L +  S    P          + +    
Sbjct: 273 GLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGG 332

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
            L   +   +          + RL  +C   E  +RP+  ++   L S++K 
Sbjct: 333 RLPCPELCPD---------AVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 30/159 (18%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGL-MKNSRDGKSYS 62
               YL Q     +Y       + H DL    +  ++D   ++  FGL  K   DG+   
Sbjct: 116 EARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK 173

Query: 63  TN---LAFTPPEYMRTGRV-TPESVVYSFGTMLLDLLSGKHIPPSHALDL------IRSK 112
                  +  PE + + +  + E  V+S G ++  LL GK  PP     L      I+  
Sbjct: 174 VLCGTPNYIAPE-VLSKKGHSFEVDVWSIGCIMYTLLVGK--PPFETSCLKETYLRIKKN 230

Query: 113 NFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN 151
            +      ++  H +         L  + LQ++   RP 
Sbjct: 231 EY------SIPKHIN----PVAASLIQKMLQTDPTARPT 259

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 30/159 (18%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGL-MKNSRDGKSYS 62
               YL Q     +Y       + H DL    +  ++D   ++  FGL  K   DG+   
Sbjct: 142 EARYYLRQIVLGCQYLHRNR--VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK 199

Query: 63  T---NLAFTPPEYMRTGRV-TPESVVYSFGTMLLDLLSGKHIPPSHALDL------IRSK 112
                  +  PE + + +  + E  V+S G ++  LL GK  PP     L      I+  
Sbjct: 200 VLCGTPNYIAPE-VLSKKGHSFEVDVWSIGCIMYTLLVGK--PPFETSCLKETYLRIKKN 256

Query: 113 NFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN 151
            +      ++  H +         L  + LQ++   RP 
Sbjct: 257 EY------SIPKHIN----PVAASLIQKMLQTDPTARPT 285

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 16/149 (10%)

Query: 15  QALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP----P 70
           QALE+  S    ++ D+ +  IL   DG+ +L+ FG        +S  + +  TP    P
Sbjct: 127 QALEFLHSNQV-IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 185

Query: 71  EYMRTGRVTPESVVYSFGTMLLDLLSGK----HIPPSHALDLIRSKNFLLLMDSALEGHF 126
           E +      P+  ++S G M ++++ G+    +  P  AL LI +     L +       
Sbjct: 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNP---EKL 242

Query: 127 SNDEGTELVRLASRCLQSEARERPNAKSL 155
           S           +RCL+ +  +R +AK L
Sbjct: 243 SA----IFRDFLNRCLEMDVEKRGSAKEL 267

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 37/164 (22%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDL---NAYRILFDKDGNPRLSSFGLMKNSRDGKSY 61
            V +Y+ +   ALE+    G  +Y D+   N   IL D +G+  L+ FGL K     ++ 
Sbjct: 160 EVQIYVGEIVLALEHLHKLG-IIYRDIKLEN---ILLDSNGHVVLTDFGLSKEFVADETE 215

Query: 62  STNLAF--TPPEYMRTGRVTPESVVY------------SFGTMLLDLLSGKHIPPSHALD 107
                F  T  EYM      P+ V              S G ++ +LL+G    P     
Sbjct: 216 RAY-DFCGT-IEYM-----APDIVRGGDSGHDKAVDWWSLGVLMYELLTGA--SPFTVDG 266

Query: 108 LIRSKNFLLLMDSALEG--HFSNDEGTELVRLASRCLQSEARER 149
                +   +    L+    +  +       L  R L  + ++R
Sbjct: 267 --EKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKR 308

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 28/111 (25%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMK-NSRDGKSYST 63
           R   Y A+   ALEY  S+   +Y D+    ++ DKDG+ +++ FGL K    DG +  T
Sbjct: 106 RARFYGAEIVSALEYLHSRD-VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT 164

Query: 64  NLAF--TPPEYMRTGRVTPESVVY----------SFGTMLLDLLSGKHIPP 102
              F  T PEY+      PE +              G ++ +++ G+   P
Sbjct: 165 ---FCGT-PEYL-----APEVLEDNDYGRAVDWWGLGVVMYEMMCGR--LP 204

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 39/201 (19%)

Query: 3   WAMRLRVALYLAQALEY-----CSSKGR-ALYH-DLNAYRILFDKDGNPRLSSFGL---- 51
               +++AL  A  L +       ++G+ A+ H DL +  IL  K+G   ++  GL    
Sbjct: 138 VEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 197

Query: 52  MKNSRDGKSYSTNLAFTP----PEYMRTGRVTPESV-------VYSFGTMLLDLLSGKHI 100
              +        +   T     PE +    +  +         +Y+ G +  ++     I
Sbjct: 198 DSATDTIDIAPNHRVGTKRYMAPEVLD-DSINMKHFESFKRADIYAMGLVFWEIARRCSI 256

Query: 101 ---PPSHAL---DLIRSKNFLLLMDSAL----------EGHFSNDEGTELVRLASRCLQS 144
                 + L   DL+ S   +  M   +              S +    + ++   C  +
Sbjct: 257 GGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYA 316

Query: 145 EARERPNAKSLVISLMSLQKE 165
               R  A  +  +L  L ++
Sbjct: 317 NGAARLTALRIKKTLSQLSQQ 337

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 34/114 (29%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDL---NAYRILFDKDGNPRLSSFGLMK-NSRDGKS 60
            V  YLA+   AL++  S G  +Y DL   N   IL D++G+ +L+ FGL K +    K 
Sbjct: 127 DVKFYLAELALALDHLHSLG-IIYRDLKPEN---ILLDEEGHIKLTDFGLSKESIDHEKK 182

Query: 61  YSTNLAF--TPPEYMRTGRVTPESVVY----------SFGTMLLDLLSGKHIPP 102
             +   F  T  EYM      PE V            SFG ++ ++L+G    P
Sbjct: 183 AYS---FCGT-VEYM-----APEVVNRRGHTQSADWWSFGVLMFEMLTGT--LP 225

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 20/160 (12%)

Query: 8   RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAF 67
           ++A+ + +ALE+  SK   ++ D+    +L +  G  ++  FG+     D  +   + A 
Sbjct: 113 KIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDID-AG 171

Query: 68  TPPEYMRTGRVTPESV---------VYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM 118
             P YM   R+ PE           ++S G  +++L   +   P  +      +   ++ 
Sbjct: 172 CKP-YMAPERINPELNQKGYSVKSDIWSLGITMIELAILR--FPYDSWGTPFQQLKQVVE 228

Query: 119 D---SALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
           +         FS     E V   S+CL+  ++ERP    L
Sbjct: 229 EPSPQLPADKFSA----EFVDFTSQCLKKNSKERPTYPEL 264

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 17/167 (10%), Positives = 38/167 (22%), Gaps = 32/167 (19%)

Query: 13  LAQALEYCSSKGRA----------LYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYS 62
           +   +E                  L +         D      L   G    S D K + 
Sbjct: 181 MLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQ---SIDMKLFP 237

Query: 63  TNLAFTP----PEY----MRTGRVTPESV-VYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
               FT       +    M + +     +  +     +  +L G ++        ++++ 
Sbjct: 238 KGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMK-------VKNEG 290

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM 160
                +         D   E        L         +  L+   +
Sbjct: 291 GECKPEGLFRRLPHLDMWNEFFH---VMLNIPDCHHLPSLDLLRQKL 334

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 16/99 (16%)

Query: 13  LAQALEYCSSKGRALYH-DL---NAYRILFDKDGNPRLSSFGLMKNSRDGKSYST--NLA 66
           +  +  Y  ++ + + H D+   N   IL DK+G  +LS FG  +   D K   +     
Sbjct: 160 VLNSFSYIHNE-KNICHRDVKPSN---ILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYE 215

Query: 67  FTPPEYMRTGRVT---PESVVYSFGTMLLDLLSGKHIPP 102
           F PPE   +   +    +  ++S G  L  +       P
Sbjct: 216 FMPPE-FFSNESSYNGAKVDIWSLGICLYVMFYNV--VP 251

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 34/114 (29%)

Query: 8   RVALYLAQ---ALEYCSSKGRALYHDL---NAYRILFDKDGNPRLSSFGLMK-NSRDGKS 60
               YLA+   AL +   KG  +Y DL   N   I+ +  G+ +L+ FGL K +  DG  
Sbjct: 122 TACFYLAEISMALGHLHQKG-IIYRDLKPEN---IMLNHQGHVKLTDFGLCKESIHDGTV 177

Query: 61  YSTNLAF--TPPEYMRTGRVTPESVVY----------SFGTMLLDLLSGKHIPP 102
             T   F  T  EYM      PE ++           S G ++ D+L+G   PP
Sbjct: 178 THT---FCGT-IEYM-----APEILMRSGHNRAVDWWSLGALMYDMLTGA--PP 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.98
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.98
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.98
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.98
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.97
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.97
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.97
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.97
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.97
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.97
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.97
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.97
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.97
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.97
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.97
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.97
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.97
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.97
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.97
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.97
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.97
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.97
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.97
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.97
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.97
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.97
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.97
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.97
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.97
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.97
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.97
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.97
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.97
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.97
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.97
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.97
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.97
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.97
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.97
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.97
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.97
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.97
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.97
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.97
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.97
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.97
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.97
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.97
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.97
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.97
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.97
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.97
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.97
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.97
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.97
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.97
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.97
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.97
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.97
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.97
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.97
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.97
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.97
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.97
3niz_A	311	Rhodanese family protein; structural genomics, str	99.97
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.97
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.97
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.97
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.97
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.97
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.97
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.97
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.97
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.97
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.97
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.97
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.97
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.97
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.97
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.97
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.97
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.97
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.97
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.97
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.97
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.97
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.97
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.97
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.97
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.97
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.97
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.97
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.97
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.97
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.97
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.97
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.97
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.97
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.97
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.97
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.97
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.97
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.97
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.97
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.97
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.97
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.97
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.97
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.97
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.97
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.97
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.97
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.97
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.97
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.97
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.97
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.97
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.97
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.97
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.97
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.97
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.97
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.97
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.97
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.97
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.97
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.97
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.97
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.96
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.96
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.96
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.96
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.96
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.96
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.96
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.96
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.96
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.96
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.96
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.96
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.96
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.96
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.96
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.96
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.96
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.96
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.96
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.96
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.96
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.96
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.96
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.96
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.96
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.96
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.96
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.96
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.96
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.96
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.96
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.96
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.96
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.96
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.96
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.96
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.96
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.96
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.96
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.96
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.96
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.96
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.96
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.96
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.96
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.96
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.96
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.96
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.96
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.96
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.96
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.96
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.96
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.96
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.96
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.96
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.96
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.96
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.96
3bhy_A	283	Death-associated protein kinase 3; death associate	99.96
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.96
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.96
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.96
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.96
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.96
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.96
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.96
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.96
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.96
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.96
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.96
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.96
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.96
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.95
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.95
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.95
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.95
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.95
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.94
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.94
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.92
3uqc_A	286	Probable conserved transmembrane protein; structur	99.91
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.88
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.87
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.83
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.83
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.82
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.77
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.76
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.75
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.71
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.7
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.69
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.69
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.68
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.67
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.66
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.64
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.63
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.63
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.61
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.59
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.58
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.58
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.57
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.57
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.55
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.55
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.55
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.54
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.53
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.51
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.5
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.49
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.49
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.47
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.46
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.46
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.45
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.45
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.45
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.44
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.43
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.41
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.4
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.4
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.4
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.4
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.4
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.39
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.39
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.39
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.39
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.39
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.38
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.38
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.37
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.37
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.36
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.36
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.35
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.35
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.35
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.33
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.33
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.32
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.32
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.32
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.31
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.31
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.31
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.3
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.3
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.3
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.29
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.24
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.21
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.2
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.2
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.2
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.19
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.19
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.18
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.18
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.18
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.18
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.16
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.15
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.15
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.15
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.14
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.12
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.12
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.1
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.1
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.1
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.1
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.09
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.07
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.07
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.07
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.05
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.04
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.03
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.03
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.02
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.01
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.98
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.98
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.97
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.97
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.95
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.94
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.94
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.94
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.92
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.88
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.87
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.87
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.84
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.83
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.76
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.72
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.69
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.66
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.64
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.64
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.58
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.57
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.57
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.54
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.49
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.47
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.33
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.32
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.25
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.24
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.22
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.2
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.18
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.08
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.04
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.94
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.92
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.9
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.75
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.71
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.7
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.53
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.52
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.46
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.46
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.44
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.36
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.36
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.35
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.19
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.0
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.91
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.58
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.48
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.38
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.2
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.16
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.16
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.72
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.53
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.3
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	95.27
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	95.07
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.89
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.76
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.66
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.65

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.3e-45  Score=354.15  Aligned_cols=148  Identities=22%  Similarity=0.285  Sum_probs=119.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccccCCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTP   80 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~   80 (340)
                      ++|.+++.|+.||+.||.|||++| ||||||||+|||++.+ .+||+|||+++.........||+.|+|||++.+.. +.
T Consensus       179 l~~~~~~~~~~qi~~aL~~lH~~g-iiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~~-~~  255 (681)
T 2pzi_A          179 LPVAEAIAYLLEILPALSYLHSIG-LVYNDLKPENIMLTEE-QLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTGP-TV  255 (681)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECSS-CEEECCCTTCEETTCCSCCCCCTTTSCTTHHHHCS-CH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CeecccChHHeEEeCC-cEEEEecccchhcccCCccCCCccccCHHHHcCCC-CC
Confidence            578999999999999999999999 9999999999999975 89999999999887777778999999999987654 88


Q ss_pred             ccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-HHHHHHHH
Q 019475           81 ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-AKSLVISL  159 (340)
Q Consensus        81 ~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-~~e~l~~l  159 (340)
                      ++|||||||++|+|++|.+|+........            .........++.+.+||.+||+.||.+||+ ++++...|
T Consensus       256 ~sDi~slG~~l~~l~~g~~~~~~~~~~~~------------~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l  323 (681)
T 2pzi_A          256 ATDIYTVGRTLAALTLDLPTRNGRYVDGL------------PEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQL  323 (681)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEETTEECSSC------------CTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHH
T ss_pred             ceehhhhHHHHHHHHhCCCCCcccccccc------------cccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHH
Confidence            99999999999999999876654211100            000001123467999999999999999995 66666666


Q ss_pred             Hhhh
Q 019475          160 MSLQ  163 (340)
Q Consensus       160 ~~~~  163 (340)
                      ..+.
T Consensus       324 ~~~~  327 (681)
T 2pzi_A          324 TGVL  327 (681)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=289.93  Aligned_cols=164  Identities=19%  Similarity=0.242  Sum_probs=129.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |+|.+++.|+.||+.||.|||+++ ||||||||+|||++.++++||+|||+++.....      .+..||+.|||||++.
T Consensus       129 l~~~~~~~i~~qia~gL~yLH~~~-IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~  207 (307)
T 3omv_A          129 FQMFQLIDIARQTAQGMDYLHAKN-IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIR  207 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhh
Confidence            689999999999999999999999 999999999999999999999999999865422      3457899999999996


Q ss_pred             c---CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           75 T---GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        75 ~---~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      +   ++++.++|||||||++|||+||+.||........-......-.........+..+++.+.+||.+||+.||++|||
T Consensus       208 ~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs  287 (307)
T 3omv_A          208 MQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPL  287 (307)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCC
T ss_pred             ccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcC
Confidence            4   4589999999999999999999999875422111111111110111112345567889999999999999999999


Q ss_pred             HHHHHHHHHhhhhh
Q 019475          152 AKSLVISLMSLQKE  165 (340)
Q Consensus       152 ~~e~l~~l~~~~~~  165 (340)
                      +.+|+++|+.+...
T Consensus       288 ~~ei~~~Le~l~~~  301 (307)
T 3omv_A          288 FPQILSSIELLQHS  301 (307)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=6.4e-40  Score=290.19  Aligned_cols=159  Identities=20%  Similarity=0.257  Sum_probs=130.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |+|.+++.|+.||+.||.|||+++ ||||||||+||||+.++++||+|||+++.....      ....||+.|||||++.
T Consensus       155 l~~~~~~~i~~qia~gl~yLH~~~-iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~  233 (329)
T 4aoj_A          155 LGLGQLLAVASQVAAGMVYLAGLH-FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESIL  233 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-eecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhc
Confidence            579999999999999999999999 999999999999999999999999999865432      2346899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||+| |+.||......     .....+....+.+.|..+++++.+||.+||+.||++|||+.
T Consensus       234 ~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~-----~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~  308 (329)
T 4aoj_A          234 YRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT-----EAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK  308 (329)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH-----HHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHH
T ss_pred             CCCCCccccccchHHHHHHHHcCCCCCCCCCCHH-----HHHHHHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHH
Confidence            9999999999999999999999 89888764322     12222223334456777889999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ||+++|+.+.+.
T Consensus       309 ei~~~L~~l~~~  320 (329)
T 4aoj_A          309 DVHARLQALAQA  320 (329)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhC
Confidence            999999988765

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.9e-40  Score=287.79  Aligned_cols=160  Identities=21%  Similarity=0.271  Sum_probs=135.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |+|.+++.|+.||+.||.|||+++ ||||||||+|||++.++++||+|||+++.....      ....||+.|||||++.
T Consensus       125 l~~~~~~~i~~qia~gl~yLH~~~-iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~  203 (299)
T 4asz_A          125 LTQSQMLHIAQQIAAGMVYLASQH-FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM  203 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHc
Confidence            689999999999999999999999 999999999999999999999999999864432      2345799999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||+| |+.||......     .+...+......+.|..+++++.+||.+||+.||++|||+.
T Consensus       204 ~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~-----~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~  278 (299)
T 4asz_A          204 YRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN-----EVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIK  278 (299)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH-----HHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHH
Confidence            9999999999999999999998 89888764322     22222223333455677889999999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      ++.+.|+.+.+..
T Consensus       279 ~i~~~L~~~~~~~  291 (299)
T 4asz_A          279 GIHTLLQNLAKAS  291 (299)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcC
Confidence            9999998876653

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=5.1e-40  Score=288.20  Aligned_cols=156  Identities=18%  Similarity=0.244  Sum_probs=133.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC------CCCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD------GKSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~   74 (340)
                      |+|.++++|+.||+.||.|||+++ ||||||||+||||+.++++||+|||+++....      .....||+.|||||++.
T Consensus       142 l~~~~~~~i~~qia~gl~yLH~~~-iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~  220 (308)
T 4gt4_A          142 LEPPDFVHLVAQIAAGMEYLSSHH-VVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIM  220 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-CCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHh
Confidence            578999999999999999999999 99999999999999999999999999985432      23456899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++.++|||||||++|||+| |..||.+....     .+...+......+.|..++.++.+|+.+||+.||++|||+.
T Consensus       221 ~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~-----~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~  295 (308)
T 4gt4_A          221 YGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ-----DVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFK  295 (308)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHH
Confidence            9999999999999999999998 78888765322     22333333444456778889999999999999999999999


Q ss_pred             HHHHHHHhh
Q 019475          154 SLVISLMSL  162 (340)
Q Consensus       154 e~l~~l~~~  162 (340)
                      +|+++|+..
T Consensus       296 ei~~~L~a~  304 (308)
T 4gt4_A          296 DIHSRLRAW  304 (308)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHhc
Confidence            999999764

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.9e-39  Score=286.23  Aligned_cols=162  Identities=17%  Similarity=0.133  Sum_probs=133.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCC---------CCcccCCccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDG---------KSYSTNLAFTPP   70 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~---------~~~~~~~~y~aP   70 (340)
                      |++.++..|+.||+.||.|||+++ ||||||||+||||+.+| ++||+|||+++.....         ...+||+.||||
T Consensus       147 l~e~~~~~~~~qi~~aL~ylH~~~-IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAP  225 (336)
T 4g3f_A          147 LPEDRALYYLGQALEGLEYLHTRR-ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAP  225 (336)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCH
Confidence            578899999999999999999999 99999999999999987 6999999999865432         234799999999


Q ss_pred             cccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-ccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           71 EYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-LEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        71 E~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                      |++.+..++.++|||||||++|||++|+.||.......    ....+.... .....++.+++.+.+||.+||+.||.+|
T Consensus       226 E~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~----~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  301 (336)
T 4g3f_A          226 EVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP----LCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHR  301 (336)
T ss_dssp             HHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC----CHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH----HHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHC
Confidence            99999999999999999999999999999987643211    111121111 1123456778899999999999999999


Q ss_pred             CCHHHHHHHHHhhhhhcc
Q 019475          150 PNAKSLVISLMSLQKEAE  167 (340)
Q Consensus       150 ps~~e~l~~l~~~~~~~~  167 (340)
                      ||+.|++++|........
T Consensus       302 ~sa~el~~~l~~~l~~~~  319 (336)
T 4g3f_A          302 ASAMELRRKVGKALQEVG  319 (336)
T ss_dssp             CCHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHhhhh
Confidence            999999999988776643

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=9.3e-40  Score=291.48  Aligned_cols=160  Identities=22%  Similarity=0.347  Sum_probs=136.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      |+|.+++.|+.||+.||.|||+++ ||||||||+|||++.++++||+|||+++......      +..||+.|||||++.
T Consensus       182 l~~~~~~~~~~qia~gl~yLH~~~-iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~  260 (353)
T 4ase_A          182 LTLEHLICYSFQVAKGMEFLASRK-CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF  260 (353)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhHhhCC-eecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHh
Confidence            578999999999999999999999 9999999999999999999999999998664432      345789999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||+| |+.||++....    ..+...+....+...|..+++++.+||.+||+.||++|||+.
T Consensus       261 ~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~----~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~  336 (353)
T 4ase_A          261 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID----EEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS  336 (353)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS----HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHH----HHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHH
Confidence            9999999999999999999998 89888764221    123333444445556777889999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      +++++|+.+.+.
T Consensus       337 eil~~L~~llq~  348 (353)
T 4ase_A          337 ELVEHLGNLLQA  348 (353)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=7.5e-39  Score=283.32  Aligned_cols=155  Identities=21%  Similarity=0.277  Sum_probs=128.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      |++.++..|+.||+.||.|||+++ ||||||||+||||+.+|++||+|||+++.....    .+.+||+.|||||++.+.
T Consensus       167 l~e~~~~~~~~qi~~aL~ylH~~~-IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~  245 (346)
T 4fih_A          167 MNEEQIAAVCLAVLQALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRL  245 (346)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCC
Confidence            578899999999999999999999 999999999999999999999999999876433    456899999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-ccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-LEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .|+.++|||||||++|||++|+.||........    +..+.... .....+..+++++.+||.+||..||++|||+.|+
T Consensus       246 ~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~----~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~  321 (346)
T 4fih_A          246 PYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA----MKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  321 (346)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH----HHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH----HHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            999999999999999999999999876532211    11111111 1112334677899999999999999999999999


Q ss_pred             HHHHH
Q 019475          156 VISLM  160 (340)
Q Consensus       156 l~~l~  160 (340)
                      ++|-+
T Consensus       322 l~Hp~  326 (346)
T 4fih_A          322 LKHPF  326 (346)
T ss_dssp             TTCGG
T ss_pred             hcCHh
Confidence            98743

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3.4e-39  Score=285.93  Aligned_cols=154  Identities=19%  Similarity=0.297  Sum_probs=129.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.|+.||+.||.|||++| ||||||||+||||+.+|++||+|||+++.....    .+.+||+.|||||++.+.
T Consensus       122 ~~e~~~~~~~~qi~~aL~ylH~~~-IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~  200 (350)
T 4b9d_A          122 FQEDQILDWFVQICLALKHVHDRK-ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENK  200 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCC
Confidence            356788899999999999999999 999999999999999999999999999876543    245799999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .|+.++|||||||++|||++|+.||........    +..+..... ...+..+++++.+||.+||+.||++|||+.|++
T Consensus       201 ~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~----~~~i~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l  275 (350)
T 4b9d_A          201 PYNNKSDIWALGCVLYELCTLKHAFEAGSMKNL----VLKIISGSF-PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSIL  275 (350)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH----HHHHHHTCC-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH----HHHHHcCCC-CCCCccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            999999999999999999999999977543322    122222221 234556788999999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      +|-+
T Consensus       276 ~hp~  279 (350)
T 4b9d_A          276 EKGF  279 (350)
T ss_dssp             TSHH
T ss_pred             cCHH
Confidence            8754

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.5e-38  Score=273.60  Aligned_cols=153  Identities=20%  Similarity=0.245  Sum_probs=121.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      |+..+...++.||+.||+|||+++ |+||||||+|||++.++++||+|||+++.....   .+..||+.|||||++.+..
T Consensus       109 l~e~~~~~~~~qi~~al~ylH~~~-IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~  187 (275)
T 3hyh_A          109 MSEQEARRFFQQIISAVEYCHRHK-IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKL  187 (275)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTTEEECTTCCEEECCSSCC---------------CTTSCHHHHSSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCC
Confidence            577889999999999999999999 999999999999999999999999999865543   4568999999999999887


Q ss_pred             C-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 V-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      + +.++|||||||++|+|++|+.||.......+-    ..+...  ...+|...++++.+||.+||+.||++|||++|++
T Consensus       188 y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~----~~i~~~--~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil  261 (275)
T 3hyh_A          188 YAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLF----KNISNG--VYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIM  261 (275)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHT--CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             CCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHH----HHHHcC--CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHH
Confidence            6 57999999999999999999999765433221    111111  1234566788999999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      +|-+
T Consensus       262 ~hpw  265 (275)
T 3hyh_A          262 QDDW  265 (275)
T ss_dssp             HCHH
T ss_pred             cCcc
Confidence            9854

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-38  Score=276.33  Aligned_cols=154  Identities=18%  Similarity=0.266  Sum_probs=123.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEcC-CCCeEEecccCcccCCCC--CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~   76 (340)
                      |++.++..|+.||+.||.|||+++ +||||||||+|||++. +|++||+|||+++.....  .+.+||+.|||||++.+ 
T Consensus       126 l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~-  204 (290)
T 3fpq_A          126 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-  204 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcCC-
Confidence            578899999999999999999986 4999999999999984 799999999999865443  34579999999999864 


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      +++.++|||||||++|||+||+.||.......    .+...+.. .....++...++++.+||.+||+.||++|||+.|+
T Consensus       205 ~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~  280 (290)
T 3fpq_A          205 KYDESVDVYAFGMCMLEMATSEYPYSECQNAA----QIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL  280 (290)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH----HHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHH----HHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            69999999999999999999999986532111    11111111 11112233456789999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      ++|.
T Consensus       281 l~Hp  284 (290)
T 3fpq_A          281 LNHA  284 (290)
T ss_dssp             HTSG
T ss_pred             hcCc
Confidence            9874

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=6.6e-38  Score=283.96  Aligned_cols=154  Identities=21%  Similarity=0.275  Sum_probs=128.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      |++.++..|+.||+.||.|||++| ||||||||+||||+.+|++||+|||+++.....    .+.+||+.|||||++.+.
T Consensus       244 l~e~~~~~~~~qil~aL~ylH~~~-IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~  322 (423)
T 4fie_A          244 MNEEQIAAVCLAVLQALSVLHAQG-VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRL  322 (423)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCC
Confidence            577889999999999999999999 999999999999999999999999999876433    456899999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-ccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-LEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .|+.++|||||||++|||++|+.||.+......    +..+.... .....+..+++++.+||.+||..||++|||+.|+
T Consensus       323 ~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~----~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~el  398 (423)
T 4fie_A          323 PYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA----MKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  398 (423)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH----HHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH----HHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            999999999999999999999999876532211    11111111 1122344677899999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      ++|-
T Consensus       399 l~Hp  402 (423)
T 4fie_A          399 LKHP  402 (423)
T ss_dssp             TTCG
T ss_pred             hcCH
Confidence            9874

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=5.4e-38  Score=273.78  Aligned_cols=152  Identities=21%  Similarity=0.279  Sum_probs=126.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      |++.++..|+.||+.||.|||++| ||||||||+|||++.+|++||+|||+++....    ..+.+||+.|||||++.+.
T Consensus       123 l~e~~~~~~~~qi~~aL~ylH~~~-IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~  201 (304)
T 3ubd_A          123 FTEEDVKFYLAELALALDHLHSLG-IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR  201 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccC
Confidence            577889999999999999999999 99999999999999999999999999986432    2456899999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----  151 (340)
                      .++.++|||||||++|||++|+.||.+......-    ..+...  ...+|..+++++.+||.+||+.||++|||     
T Consensus       202 ~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~----~~i~~~--~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~  275 (304)
T 3ubd_A          202 GHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETM----TMILKA--KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDG  275 (304)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHC--CCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTT
T ss_pred             CCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHH----HHHHcC--CCCCCCcCCHHHHHHHHHHcccCHHHCCCCCcCC
Confidence            9999999999999999999999999775433221    122221  22356677889999999999999999998     


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      ++|+++|-
T Consensus       276 ~~eil~Hp  283 (304)
T 3ubd_A          276 VEEIKRHS  283 (304)
T ss_dssp             HHHHHTSG
T ss_pred             HHHHHcCc
Confidence            57888763

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=3e-38  Score=275.42  Aligned_cols=152  Identities=19%  Similarity=0.246  Sum_probs=128.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |+..+...|+.||+.||.|||+++ ||||||||+|||++.+|++||+|||+++.....      .+.+||+.|||||++.
T Consensus       129 l~e~~~~~~~~qi~~al~ylH~~~-IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~  207 (311)
T 4aw0_A          129 FDETCTRFYTAEIVSALEYLHGKG-IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT  207 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHc
Confidence            567888999999999999999999 999999999999999999999999999875422      3568999999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      +..++.++|||||||++|+|++|+.||.......+    +..+....  ..+|...++++.+||.+||+.||++|||+.|
T Consensus       208 ~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~----~~~i~~~~--~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e  281 (311)
T 4aw0_A          208 EKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLI----FAKIIKLE--YDFPEKFFPKARDLVEKLLVLDATKRLGCEE  281 (311)
T ss_dssp             HSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHHTC--CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGG
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHHcCC--CCCCcccCHHHHHHHHHHccCCHhHCcChHH
Confidence            99999999999999999999999999976543322    12222211  2356677889999999999999999999999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      ++.+-
T Consensus       282 ~~~~~  286 (311)
T 4aw0_A          282 MEGYG  286 (311)
T ss_dssp             GTCHH
T ss_pred             HcCCH
Confidence            76553

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=4.6e-37  Score=269.78  Aligned_cols=165  Identities=15%  Similarity=0.222  Sum_probs=125.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC--------CCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK--------GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~--------~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~   64 (340)
                      ++|+++++|+.|++.||+|||++        + ||||||||+|||++.++++||+|||+++.....        ....||
T Consensus        97 l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~-IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT  175 (303)
T 3hmm_A           97 VTVEGMIKLALSTASGLAHLHMEIVGTQGKPA-IAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGT  175 (303)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCC-EECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC-EeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeeccccccc
Confidence            57999999999999999999987        6 999999999999999999999999999865432        234689


Q ss_pred             CccCCccccccC------CCCCccchhhHHHHHHHHHhCCCCCCcchhH----------Hhhhhhhh-HhhhccccCCCC
Q 019475           65 LAFTPPEYMRTG------RVTPESVVYSFGTMLLDLLSGKHIPPSHALD----------LIRSKNFL-LLMDSALEGHFS  127 (340)
Q Consensus        65 ~~y~aPE~~~~~------~~~~~~Di~slG~~~~el~~g~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~  127 (340)
                      +.|||||++.+.      .++.++|||||||++|||+||.+|+......          ........ .+.....+...|
T Consensus       176 ~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p  255 (303)
T 3hmm_A          176 KRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP  255 (303)
T ss_dssp             GGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCC
T ss_pred             ccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCC
Confidence            999999999754      3677999999999999999998765321100          00001111 112222233333


Q ss_pred             c-----hhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          128 N-----DEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       128 ~-----~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                      .     ..+..+.+|+.+||+.||++|||+.+|++.|+.+.+..
T Consensus       256 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~  299 (303)
T 3hmm_A          256 NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  299 (303)
T ss_dssp             GGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             ccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHc
Confidence            2     45678999999999999999999999999999887653

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.6e-36  Score=263.97  Aligned_cols=145  Identities=20%  Similarity=0.319  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------CCcccCCc
Q 019475            3 WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------KSYSTNLA   66 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------~~~~~~~~   66 (340)
                      +..++.|+.||+.||+|||+++ ||||||||+|||++.+|++||+|||+++.....                .+.+||+.
T Consensus       117 ~~~~~~i~~qi~~al~ylH~~~-IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~  195 (299)
T 4g31_A          117 RSVCLHIFLQIAEAVEFLHSKG-LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKL  195 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCc-CccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCcc
Confidence            4567889999999999999999 999999999999999999999999999865432                23469999


Q ss_pred             cCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCc---hhHHHHHHHHHHhcc
Q 019475           67 FTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSN---DEGTELVRLASRCLQ  143 (340)
Q Consensus        67 y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~cl~  143 (340)
                      |||||++.+..++.++|||||||++|||++   ||.......   .....+.    ...+|+   ..++...+||.+||+
T Consensus       196 YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~---~~~~~~~----~~~~p~~~~~~~~~~~~li~~~L~  265 (299)
T 4g31_A          196 YMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERV---RTLTDVR----NLKFPPLFTQKYPCEYVMVQDMLS  265 (299)
T ss_dssp             TSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHH---HHHHHHH----TTCCCHHHHHHCHHHHHHHHHHTC
T ss_pred             ccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHH---HHHHHHh----cCCCCCCCcccCHHHHHHHHHHcC
Confidence            999999999999999999999999999996   554422111   1111111    112222   334567899999999


Q ss_pred             cCCCCCCCHHHHHHH
Q 019475          144 SEARERPNAKSLVIS  158 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~  158 (340)
                      .||.+|||+.++++|
T Consensus       266 ~dP~~Rps~~eil~h  280 (299)
T 4g31_A          266 PSPMERPEAINIIEN  280 (299)
T ss_dssp             SSGGGSCCHHHHHTS
T ss_pred             CChhHCcCHHHHhcC
Confidence            999999999999886

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.3e-35  Score=266.27  Aligned_cols=158  Identities=21%  Similarity=0.244  Sum_probs=120.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-CCeEEecccCcccCCCC---------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-GNPRLSSFGLMKNSRDG---------------------   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-~~~kl~Dfg~~~~~~~~---------------------   58 (340)
                      |++.++..++.||+.||+|||++| ||||||||+|||++.+ +.+||+|||+++.....                     
T Consensus       114 l~~~~~~~~~~qll~al~ylH~~g-IiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (361)
T 4f9c_A          114 LSFQEVREYMLNLFKALKRIHQFG-IVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNK  192 (361)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC-------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCcccccccccccccccccccccc
Confidence            577889999999999999999999 9999999999999877 79999999999754322                     


Q ss_pred             -----------CCcccCCccCCccccccCC-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH----------
Q 019475           59 -----------KSYSTNLAFTPPEYMRTGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL----------  116 (340)
Q Consensus        59 -----------~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~----------  116 (340)
                                 .+.+||+.|+|||++.+.. ++.++||||+||++|||++|+.||............+..          
T Consensus       193 ~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~  272 (361)
T 4f9c_A          193 CSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQA  272 (361)
T ss_dssp             -------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhh
Confidence                       2346899999999998764 899999999999999999999998653211110000000          


Q ss_pred             ---------------------hhhc------------------cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475          117 ---------------------LMDS------------------ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus       117 ---------------------~~~~------------------~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                                           ....                  ....+.....++++.+||.+||+.||++|||++|+++
T Consensus       273 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~  352 (361)
T 4f9c_A          273 AKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALL  352 (361)
T ss_dssp             HHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             hhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                                 0000                  0000112245678999999999999999999999998


Q ss_pred             HH
Q 019475          158 SL  159 (340)
Q Consensus       158 ~l  159 (340)
                      |.
T Consensus       353 Hp  354 (361)
T 4f9c_A          353 HP  354 (361)
T ss_dssp             SG
T ss_pred             Cc
Confidence            74

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=268.18  Aligned_cols=158  Identities=16%  Similarity=0.222  Sum_probs=123.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC--------CCCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--------GKSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~--------~~~~~~~~~y~aPE~   72 (340)
                      |++.++..|+.||+.||.|||++| ||||||||+|||++.+|.+||+|||+++....        ..+.+||+.|||||+
T Consensus       155 l~~~~~~~~~~qil~al~ylH~~~-iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv  233 (398)
T 4b99_A          155 LTLEHVRYFLYQLLRGLKYMHSAQ-VIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPEL  233 (398)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCc-CcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHH
Confidence            577889999999999999999999 99999999999999999999999999986532        235689999999999


Q ss_pred             cccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh------------------ccccCCC-------
Q 019475           73 MRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD------------------SALEGHF-------  126 (340)
Q Consensus        73 ~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-------  126 (340)
                      +.+. .++.++||||+||++|||++|++||.+......-.........                  ..+....       
T Consensus       234 ~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (398)
T 4b99_A          234 MLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETV  313 (398)
T ss_dssp             HTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHH
T ss_pred             hcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHh
Confidence            8875 4689999999999999999999999775322111110000000                  0000000       


Q ss_pred             CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          127 SNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       127 ~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      .+..++++.+||.+||..||.+|||+.|+++|-
T Consensus       314 ~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp  346 (398)
T 4b99_A          314 YPGADRQALSLLGRMLRFEPSARISAAAALRHP  346 (398)
T ss_dssp             STTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSG
T ss_pred             CCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCH
Confidence            123467899999999999999999999999884

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=2.6e-34  Score=272.07  Aligned_cols=155  Identities=21%  Similarity=0.232  Sum_probs=127.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCcccccc-CC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRT-GR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~-~~   77 (340)
                      |+...+..|+.||+.||.|||++| ||||||||+||||+.+|++||+|||+++.....  .+.+||+.|||||++.+ ..
T Consensus       289 l~E~~a~~y~~qIl~aL~yLH~~g-IiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~  367 (689)
T 3v5w_A          289 FSEADMRFYAAEIILGLEHMHNRF-VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVA  367 (689)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECCCCSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCchHHeEEeCCCCEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCC
Confidence            567888999999999999999999 999999999999999999999999999876543  45689999999999964 57


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----H
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----A  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~  152 (340)
                      |+.++|+|||||++|||++|.+||......... .....+..  ....+|...++++.+||.+||..||.+|++     +
T Consensus       368 y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~-~i~~~i~~--~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga  444 (689)
T 3v5w_A          368 YDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH-EIDRMTLT--MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGA  444 (689)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHH-HHHHHHHH--CCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH-HHHHhhcC--CCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCH
Confidence            999999999999999999999999764321110 11111111  223456678899999999999999999998     7


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      +++++|.
T Consensus       445 ~ei~~Hp  451 (689)
T 3v5w_A          445 QEVKESP  451 (689)
T ss_dssp             HHHTTSG
T ss_pred             HHHhcCc
Confidence            9998874

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.4e-33  Score=267.57  Aligned_cols=154  Identities=15%  Similarity=0.123  Sum_probs=126.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC--CCeEEecccCcccCCCCC---CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD--GNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~   75 (340)
                      |++.++..|+.||+.||.|||+++ |+||||||+|||++.+  +.+||+|||+++......   +.+||+.|||||++.+
T Consensus       252 l~e~~~~~~~~qi~~al~ylH~~~-iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~  330 (573)
T 3uto_A          252 MSEDEAVEYMRQVCKGLCHMHENN-YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEG  330 (573)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccCHHHhCC
Confidence            356788999999999999999999 9999999999999854  899999999999876553   4579999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--cccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..++.++|||||||++|||++|..||.+......    +..+...  .+.......+++++.+||.+||..||.+|||+.
T Consensus       331 ~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~  406 (573)
T 3uto_A          331 KPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET----LRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIH  406 (573)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH----HHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH----HHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHH
Confidence            9999999999999999999999999977543221    1111111  111222345678899999999999999999999


Q ss_pred             HHHHHH
Q 019475          154 SLVISL  159 (340)
Q Consensus       154 e~l~~l  159 (340)
                      |+++|-
T Consensus       407 e~l~Hp  412 (573)
T 3uto_A          407 QALEHP  412 (573)
T ss_dssp             HHHHST
T ss_pred             HHhcCc
Confidence            999884

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=4.4e-33  Score=247.63  Aligned_cols=160  Identities=16%  Similarity=0.264  Sum_probs=131.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....      ....++..|+|||++.
T Consensus       112 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  190 (325)
T 3kex_A          112 LGPQLLLNWGVQIAKGMYYLEEHG-MVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIH  190 (325)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHTT-CCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-CCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhc
Confidence            467889999999999999999999 999999999999999999999999999876433      2235677999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......     .....+........+..++.++.+++.+||..||.+|||+.
T Consensus       191 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~  265 (325)
T 3kex_A          191 FGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA-----EVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFK  265 (325)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT-----HHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHH
T ss_pred             cCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH-----HHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHH
Confidence            9999999999999999999999 99888664322     22222333333334555667799999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      +++++|..+....
T Consensus       266 el~~~l~~~~~~~  278 (325)
T 3kex_A          266 ELANEFTRMARDP  278 (325)
T ss_dssp             HHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999886653

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.1e-32  Score=249.19  Aligned_cols=160  Identities=21%  Similarity=0.339  Sum_probs=133.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....      ....+|+.|+|||++.
T Consensus       200 ~~~~~~~~i~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~  278 (370)
T 2psq_A          200 MTFKDLVSCTYQLARGMEYLASQK-CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALF  278 (370)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhc
Confidence            467889999999999999999999 999999999999999999999999999865432      2234578899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||.....     ......+........+..++.++.+||.+||..+|.+|||+.
T Consensus       279 ~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~  353 (370)
T 2psq_A          279 DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV-----EELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK  353 (370)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG-----GGHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            9999999999999999999999 8888765422     122223333333445667788999999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      +++++|+.+....
T Consensus       354 ell~~L~~il~~~  366 (370)
T 2psq_A          354 QLVEDLDRILTLT  366 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887653

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.98  E-value=4.9e-33  Score=247.53  Aligned_cols=159  Identities=16%  Similarity=0.257  Sum_probs=132.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......      ...+|+.|+|||++.
T Consensus       114 ~~~~~~~~~~~qi~~~l~~LH~~~-ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~  192 (327)
T 3poz_A          114 IGSQYLLNWCVQIAKGMNYLEDRR-LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL  192 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-eeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhc
Confidence            467889999999999999999999 9999999999999999999999999998654332      224577899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||.....     ......+........+..++..+.+++.+||+.+|.+|||+.
T Consensus       193 ~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  267 (327)
T 3poz_A          193 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFR  267 (327)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-----GGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHH
T ss_pred             cCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH-----HHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCCCHH
Confidence            9999999999999999999999 8988765422     223333333334445666788999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      +++++|..+...
T Consensus       268 ell~~l~~~~~~  279 (327)
T 3poz_A          268 ELIIEFSKMARD  279 (327)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhh
Confidence            999999988664

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.98  E-value=2.7e-32  Score=242.11  Aligned_cols=164  Identities=23%  Similarity=0.433  Sum_probs=134.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      ++|.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....      ....||+.|+|||++.
T Consensus       136 ~~~~~~~~i~~~i~~~l~~lH~~~-ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  214 (321)
T 2qkw_B          136 MSWEQRLEICIGAARGLHYLHTRA-IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFI  214 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCCC-eecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhc
Confidence            578899999999999999999999 999999999999999999999999998764322      2335789999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHH-----------hhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDL-----------IRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      +..++.++|||||||++|+|++|+.||.......           .........+++......+...+..+.+++.+||.
T Consensus       215 ~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  294 (321)
T 2qkw_B          215 KGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLA  294 (321)
T ss_dssp             HCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcC
Confidence            8999999999999999999999999886532111           11111222223333344566788899999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhh
Q 019475          144 SEARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~~~  165 (340)
                      .||++|||+.+++++|+.+.+.
T Consensus       295 ~dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          295 LSSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHHS
T ss_pred             CCcccCcCHHHHHHHHHHHhhc
Confidence            9999999999999999987664

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.98  E-value=7.7e-33  Score=249.92  Aligned_cols=166  Identities=16%  Similarity=0.178  Sum_probs=133.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc--CCCCeEEecccCcccCCCC-----------CCcccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD--KDGNPRLSSFGLMKNSRDG-----------KSYSTNLAF   67 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~--~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y   67 (340)
                      |++.+++.|+.||+.||.|||+++ |+||||||+|||++  .++.+||+|||+++.....           ....||+.|
T Consensus       149 l~~~~~~~i~~qi~~~l~~lH~~~-iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y  227 (364)
T 3op5_A          149 FSRKTVLQLSLRILDILEYIHEHE-YVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEF  227 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCc
Confidence            578999999999999999999999 99999999999999  8899999999999764322           233589999


Q ss_pred             CCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh--------hhhhhHhhhccccCCCCchhHHHHHHHHH
Q 019475           68 TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR--------SKNFLLLMDSALEGHFSNDEGTELVRLAS  139 (340)
Q Consensus        68 ~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~li~  139 (340)
                      +|||++.+..++.++|||||||++|||++|+.||.........        ......+++..+.   ....+.++.+|+.
T Consensus       228 ~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~  304 (364)
T 3op5_A          228 TSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFP---AANAPGEIAKYME  304 (364)
T ss_dssp             CCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSC---TTCCCHHHHHHHH
T ss_pred             cCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcc---cccCHHHHHHHHH
Confidence            9999999999999999999999999999999998753211110        0111222222211   2345678999999


Q ss_pred             HhcccCCCCCCCHHHHHHHHHhhhhhccCCc
Q 019475          140 RCLQSEARERPNAKSLVISLMSLQKEAEVPS  170 (340)
Q Consensus       140 ~cl~~~p~~Rps~~e~l~~l~~~~~~~~~~~  170 (340)
                      +||..+|.+||++.++++.|..+........
T Consensus       305 ~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~~  335 (364)
T 3op5_A          305 TVKLLDYTEKPLYENLRDILLQGLKAIGSKD  335 (364)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHHHHHHHTTCCC
T ss_pred             HHhcCCCCCCCCHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999888765544

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.98  E-value=3.3e-32  Score=240.26  Aligned_cols=162  Identities=20%  Similarity=0.275  Sum_probs=125.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ +|+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+
T Consensus       134 ~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~  213 (309)
T 3p86_A          134 LDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRD  213 (309)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcC
Confidence            467889999999999999999996 3999999999999999999999999998754432    34578999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ..++.++|||||||++|+|++|+.||.........    ............+...++.+.+||.+||..+|.+|||+.++
T Consensus       214 ~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l  289 (309)
T 3p86_A          214 EPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVV----AAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATI  289 (309)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHH----HHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH----HHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence            99999999999999999999999988664322111    11111222334566778899999999999999999999999


Q ss_pred             HHHHHhhhhhc
Q 019475          156 VISLMSLQKEA  166 (340)
Q Consensus       156 l~~l~~~~~~~  166 (340)
                      ++.|+.+....
T Consensus       290 l~~L~~~~~~~  300 (309)
T 3p86_A          290 MDLLRPLIKSA  300 (309)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHhC
Confidence            99999887764

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.97  E-value=2.7e-32  Score=239.34  Aligned_cols=167  Identities=11%  Similarity=0.075  Sum_probs=130.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC-----eEEecccCcccCCCC-----------CCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN-----PRLSSFGLMKNSRDG-----------KSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~-----~kl~Dfg~~~~~~~~-----------~~~~~~   64 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+||+++.++.     +||+|||+++.....           ....||
T Consensus       103 ~~~~~~~~i~~qi~~~l~~lH~~~-ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt  181 (298)
T 1csn_A          103 FSVKTVAMAAKQMLARVQSIHEKS-LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGT  181 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCC
Confidence            578899999999999999999999 999999999999987776     999999999865432           334689


Q ss_pred             CccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhH--HhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhc
Q 019475           65 LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALD--LIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCL  142 (340)
Q Consensus        65 ~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  142 (340)
                      +.|+|||++.+..++.++|||||||++|+|++|+.||......  ......+...............+++++.+|+.+||
T Consensus       182 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  261 (298)
T 1csn_A          182 ARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYAR  261 (298)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             cccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHh
Confidence            9999999999989999999999999999999999998663110  00000011100001111112345678999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhhhhhccC
Q 019475          143 QSEARERPNAKSLVISLMSLQKEAEV  168 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~~~~~~~  168 (340)
                      ..||++|||+.++++.|..+......
T Consensus       262 ~~dp~~RP~~~~l~~~l~~~~~~~~~  287 (298)
T 1csn_A          262 NLAFDATPDYDYLQGLFSKVLERLNT  287 (298)
T ss_dssp             HCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             cCCcccCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999998876543

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.97  E-value=4.8e-32  Score=246.21  Aligned_cols=162  Identities=22%  Similarity=0.325  Sum_probs=135.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....      ....+|+.|+|||++.
T Consensus       188 l~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~  266 (382)
T 3tt0_A          188 LSSKDLVSCAYQVARGMEYLASKK-CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF  266 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-EecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhc
Confidence            478899999999999999999999 999999999999999999999999999865432      2234578899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......     .....+........+..++.++.+||.+||+.||++|||+.
T Consensus       267 ~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~  341 (382)
T 3tt0_A          267 DRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE-----ELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK  341 (382)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-----HHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHH
Confidence            9999999999999999999999 88888664322     22233333334445667788999999999999999999999


Q ss_pred             HHHHHHHhhhhhccC
Q 019475          154 SLVISLMSLQKEAEV  168 (340)
Q Consensus       154 e~l~~l~~~~~~~~~  168 (340)
                      +++++|+.+......
T Consensus       342 ell~~L~~~~~~~~~  356 (382)
T 3tt0_A          342 QLVEDLDRIVALTSN  356 (382)
T ss_dssp             HHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998876533

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.97  E-value=1.7e-32  Score=241.07  Aligned_cols=161  Identities=17%  Similarity=0.203  Sum_probs=124.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHH--------hCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCS--------SKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH--------~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~   64 (340)
                      +++.+++.|+.||+.||.|||        +++ |+||||||+|||++.++.+||+|||+++.....        ....||
T Consensus       102 ~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~-ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt  180 (301)
T 3q4u_A          102 LDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA-IAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGT  180 (301)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE-EECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC-eecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccc
Confidence            478899999999999999999        888 999999999999999999999999998754332        233789


Q ss_pred             CccCCccccccC------CCCCccchhhHHHHHHHHHhC----------CCCCCcchhHHhhhhhhhHhhh-ccccCCC-
Q 019475           65 LAFTPPEYMRTG------RVTPESVVYSFGTMLLDLLSG----------KHIPPSHALDLIRSKNFLLLMD-SALEGHF-  126 (340)
Q Consensus        65 ~~y~aPE~~~~~------~~~~~~Di~slG~~~~el~~g----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  126 (340)
                      +.|+|||++.+.      .++.++|||||||++|||++|          ..||.................. ....... 
T Consensus       181 ~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (301)
T 3q4u_A          181 KRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIP  260 (301)
T ss_dssp             GGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCC
T ss_pred             cceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCC
Confidence            999999999876      455789999999999999999          7676543211111111111111 1111112 


Q ss_pred             ----CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhh
Q 019475          127 ----SNDEGTELVRLASRCLQSEARERPNAKSLVISLMSL  162 (340)
Q Consensus       127 ----~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~  162 (340)
                          +...+..+.+|+.+||+.||++|||+.++++.|+.+
T Consensus       261 ~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          261 NRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             GGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             hhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence                234678899999999999999999999999999875

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.97  E-value=3.7e-32  Score=241.43  Aligned_cols=162  Identities=18%  Similarity=0.267  Sum_probs=126.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||++| |+||||||+|||++.++.+||+|||+++......      ...+++.|+|||.+.
T Consensus       134 ~~~~~~~~i~~qi~~al~~LH~~~-ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  212 (323)
T 3qup_A          134 LPLQTLVRFMVDIACGMEYLSSRN-FIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLA  212 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHcCC-cccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhc
Confidence            467889999999999999999999 9999999999999999999999999998654332      234577899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......     .....+........+...+..+.+|+.+||..||.+|||+.
T Consensus       213 ~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  287 (323)
T 3qup_A          213 DNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA-----EIYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFT  287 (323)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG-----GHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             CCCCCCccchhhHHHHHHHHHhCCCCCccccChH-----HHHHHHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHH
Confidence            9999999999999999999999 88877654221     11222222222344556778899999999999999999999


Q ss_pred             HHHHHHHhhhhhccC
Q 019475          154 SLVISLMSLQKEAEV  168 (340)
Q Consensus       154 e~l~~l~~~~~~~~~  168 (340)
                      ++++.|+.+......
T Consensus       288 ~l~~~l~~~l~~~~~  302 (323)
T 3qup_A          288 CLRMELENILGHLSV  302 (323)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999998776543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.97  E-value=5.5e-32  Score=241.05  Aligned_cols=168  Identities=17%  Similarity=0.204  Sum_probs=131.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC-----eEEecccCcccCCCC-----------CCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN-----PRLSSFGLMKNSRDG-----------KSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~-----~kl~Dfg~~~~~~~~-----------~~~~~~   64 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.     +||+|||+++.....           ....||
T Consensus       102 ~~~~~~~~i~~qi~~~l~~LH~~~-iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt  180 (330)
T 2izr_A          102 FSLKTVLMIAIQLISRMEYVHSKN-LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGT  180 (330)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCC
Confidence            578899999999999999999999 999999999999998887     999999999864322           345789


Q ss_pred             CccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc---CCCCchhHHHHHHHHHHh
Q 019475           65 LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE---GHFSNDEGTELVRLASRC  141 (340)
Q Consensus        65 ~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~c  141 (340)
                      +.|+|||++.+..++.++|||||||++|||++|..||......... .....+......   .......+ ++.+|+.+|
T Consensus       181 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~~  258 (330)
T 2izr_A          181 ARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLK-ERYQKIGDTKRATPIEVLCENFP-EMATYLRYV  258 (330)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHH-HHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHHH
T ss_pred             ccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHH-HHHHHHHhhhccCCHHHHhccCh-HHHHHHHHH
Confidence            9999999999999999999999999999999999998763211110 000111100000   00112234 899999999


Q ss_pred             cccCCCCCCCHHHHHHHHHhhhhhccCCch
Q 019475          142 LQSEARERPNAKSLVISLMSLQKEAEVPSY  171 (340)
Q Consensus       142 l~~~p~~Rps~~e~l~~l~~~~~~~~~~~~  171 (340)
                      |..+|.+||++.++++.|..+.........
T Consensus       259 l~~~p~~RP~~~~l~~~l~~~~~~~~~~~~  288 (330)
T 2izr_A          259 RRLDFFEKPDYDYLRKLFTDLFDRKGYMFD  288 (330)
T ss_dssp             HHCCTTCCCCHHHHHHHHHHHHHHTTCCCS
T ss_pred             HhCCCCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999988877655443

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.97  E-value=3.4e-32  Score=238.83  Aligned_cols=154  Identities=20%  Similarity=0.280  Sum_probs=126.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||++......    ....||+.|+|||++.+.
T Consensus       113 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  191 (297)
T 3fxz_A          113 MDEGQIAAVCRECLQALEFLHSNQ-VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK  191 (297)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCC
Confidence            467889999999999999999999 999999999999999999999999998865543    345789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh-hccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM-DSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|||||||++|+|++|..||.........    ..+. ........+...+..+.+||.+||+.||++|||+.++
T Consensus       192 ~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el  267 (297)
T 3fxz_A          192 AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRAL----YLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKEL  267 (297)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH----HHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH----HHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHH
Confidence            9999999999999999999999998664322111    1111 1111223355677889999999999999999999999


Q ss_pred             HHHH
Q 019475          156 VISL  159 (340)
Q Consensus       156 l~~l  159 (340)
                      ++|.
T Consensus       268 l~h~  271 (297)
T 3fxz_A          268 LQHQ  271 (297)
T ss_dssp             TTCG
T ss_pred             hhCh
Confidence            8863

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.1e-32  Score=241.67  Aligned_cols=161  Identities=21%  Similarity=0.309  Sum_probs=130.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------------------Ccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------------------SYS   62 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------------------~~~   62 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......                  ...
T Consensus       105 ~~~~~~~~i~~qi~~al~~lH~~~-ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (310)
T 3s95_A          105 YPWSQRVSFAKDIASGMAYLHSMN-IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVV  183 (310)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccC
Confidence            578899999999999999999999 9999999999999999999999999998654321                  346


Q ss_pred             cCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh-hhhhHhhhccccCCCCchhHHHHHHHHHHh
Q 019475           63 TNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS-KNFLLLMDSALEGHFSNDEGTELVRLASRC  141 (340)
Q Consensus        63 ~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~c  141 (340)
                      ||+.|+|||++.+..++.++|||||||++|+|++|..|++......... ........    ...+..+++.+.+++.+|
T Consensus       184 gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~li~~~  259 (310)
T 3s95_A          184 GNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLD----RYCPPNCPPSFFPITVRC  259 (310)
T ss_dssp             SCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHH----HTCCTTCCTTHHHHHHHH
T ss_pred             CCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhcccc----ccCCCCCCHHHHHHHHHH
Confidence            8999999999999999999999999999999999998876532211111 11111111    123445566799999999


Q ss_pred             cccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          142 LQSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       142 l~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                      |+.||++|||+.++++.|+.+....
T Consensus       260 l~~dP~~Rps~~~l~~~L~~l~~~~  284 (310)
T 3s95_A          260 CDLDPEKRPSFVKLEHWLETLRMHL  284 (310)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             ccCChhhCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999887664

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.97  E-value=4.2e-32  Score=241.31  Aligned_cols=160  Identities=19%  Similarity=0.249  Sum_probs=131.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......       ...+|+.|+|||++
T Consensus       148 ~~~~~~~~i~~qi~~~L~~LH~~~-ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~  226 (325)
T 3kul_A          148 FTIMQLVGMLRGVGAGMRYLSDLG-YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAI  226 (325)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHh
Confidence            478899999999999999999999 9999999999999999999999999998765432       12346789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|+|++ |..||.......     ....+........+..++..+.+||.+||..||.+|||+
T Consensus       227 ~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  301 (325)
T 3kul_A          227 AFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD-----VISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRF  301 (325)
T ss_dssp             HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH-----HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH-----HHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCH
Confidence            98899999999999999999999 898886643222     222222333344556778899999999999999999999


Q ss_pred             HHHHHHHHhhhhhc
Q 019475          153 KSLVISLMSLQKEA  166 (340)
Q Consensus       153 ~e~l~~l~~~~~~~  166 (340)
                      .++++.|+.+....
T Consensus       302 ~eil~~L~~l~~~~  315 (325)
T 3kul_A          302 SQIVSVLDALIRSP  315 (325)
T ss_dssp             HHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhCc
Confidence            99999999987764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.97  E-value=2.4e-32  Score=246.15  Aligned_cols=160  Identities=22%  Similarity=0.338  Sum_probs=132.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....      ....+|+.|+|||++.
T Consensus       190 l~~~~~~~~~~ql~~aL~~LH~~~-ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~  268 (359)
T 3vhe_A          190 LTLEHLICYSFQVAKGMEFLASRK-CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF  268 (359)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-cccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhc
Confidence            467899999999999999999999 999999999999999999999999999865432      2345688899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||.......    .....+........+...++++.+++.+||..||.+|||+.
T Consensus       269 ~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~  344 (359)
T 3vhe_A          269 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE----EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS  344 (359)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH----HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHH
Confidence            9999999999999999999998 998886643211    12222222333344566778899999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      +++++|+.+...
T Consensus       345 ell~~L~~~~~~  356 (359)
T 3vhe_A          345 ELVEHLGNLLQA  356 (359)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.97  E-value=3.1e-32  Score=246.13  Aligned_cols=160  Identities=21%  Similarity=0.340  Sum_probs=131.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC---CeEEecccCcccC------CCCCCcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG---NPRLSSFGLMKNS------RDGKSYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~---~~kl~Dfg~~~~~------~~~~~~~~~~~y~aPE   71 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.+|   .+||+|||+++..      .......+|+.|+|||
T Consensus       178 ~~~~~~~~i~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE  256 (367)
T 3l9p_A          178 LAMLDLLHVARDIACGCQYLEENH-FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPE  256 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCC-eeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHH
Confidence            467889999999999999999999 99999999999999555   5999999998743      2233456788999999


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           72 YMRTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        72 ~~~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      ++.+..++.++|||||||++|||++ |..||......     .....+........+..++..+.+|+.+||+.+|.+||
T Consensus       257 ~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp  331 (367)
T 3l9p_A          257 AFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ-----EVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRP  331 (367)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCc
Confidence            9999999999999999999999998 88888664322     22222222333344556778899999999999999999


Q ss_pred             CHHHHHHHHHhhhhhc
Q 019475          151 NAKSLVISLMSLQKEA  166 (340)
Q Consensus       151 s~~e~l~~l~~~~~~~  166 (340)
                      |+.+++++|+.+....
T Consensus       332 s~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          332 NFAIILERIEYCTQDP  347 (367)
T ss_dssp             CHHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHHhhCh
Confidence            9999999999887764

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.97  E-value=7.6e-32  Score=237.81  Aligned_cols=157  Identities=15%  Similarity=0.160  Sum_probs=125.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....   ....+|+.|+|||++.+..
T Consensus       117 ~~~~~~~~i~~qi~~al~~lH~~~-ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  195 (308)
T 3g33_A          117 LPAETIKDLMRQFLRGLDFLHANC-IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQST  195 (308)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEEcCCCCEEEeeCccccccCCCcccCCccccccccCchHHcCCC
Confidence            578899999999999999999999 999999999999999999999999999865543   2346799999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC----------------------CCCchhHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG----------------------HFSNDEGTELV  135 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~  135 (340)
                      ++.++|||||||++|+|++|+.||............. .........                      ...+..++.+.
T Consensus       196 ~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (308)
T 3g33_A          196 YATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIF-DLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGA  274 (308)
T ss_dssp             CCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHH-HHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHH
T ss_pred             CCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHH
Confidence            9999999999999999999999987653322211111 111000000                      01124567899


Q ss_pred             HHHHHhcccCCCCCCCHHHHHHHH
Q 019475          136 RLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       136 ~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +||.+||+.||.+|||+.++++|-
T Consensus       275 ~li~~~L~~dP~~R~t~~e~l~h~  298 (308)
T 3g33_A          275 QLLLEMLTFNPHKRISAFRALQHS  298 (308)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHTST
T ss_pred             HHHHHHhcCCCccCCCHHHHhcCc
Confidence            999999999999999999999873

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.97  E-value=3.3e-32  Score=242.01  Aligned_cols=161  Identities=29%  Similarity=0.479  Sum_probs=131.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC---CCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK---GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~---~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~   72 (340)
                      ++|..++.|+.||+.||.|||++   + |+||||||+|||++.++.+||+|||+++.....     ....||+.|+|||+
T Consensus       128 ~~~~~~~~i~~~i~~~l~~lH~~~~~~-ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~  206 (326)
T 3uim_A          128 LDWPKRQRIALGSARGLAYLHDHCDPK-IIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEY  206 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSSSSC-EECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCC-eEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHH
Confidence            57889999999999999999999   8 999999999999999999999999999865432     23458999999999


Q ss_pred             cccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh-------------hhhhhhHhhhccccCCCCchhHHHHHHHHH
Q 019475           73 MRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI-------------RSKNFLLLMDSALEGHFSNDEGTELVRLAS  139 (340)
Q Consensus        73 ~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  139 (340)
                      +.+..++.++|||||||++|+|++|..||........             .........+.......+...+..+.+++.
T Consensus       207 ~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  286 (326)
T 3uim_A          207 LSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVAL  286 (326)
T ss_dssp             HHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHH
T ss_pred             hccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHH
Confidence            9988999999999999999999999988853211100             111122222333334456677889999999


Q ss_pred             HhcccCCCCCCCHHHHHHHHHhh
Q 019475          140 RCLQSEARERPNAKSLVISLMSL  162 (340)
Q Consensus       140 ~cl~~~p~~Rps~~e~l~~l~~~  162 (340)
                      +||+.||.+|||+.+++++|+..
T Consensus       287 ~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          287 LCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             HHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             HHhCcCCccCCCHHHHHHHhcCc
Confidence            99999999999999999999863

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.97  E-value=3.8e-32  Score=241.77  Aligned_cols=159  Identities=16%  Similarity=0.259  Sum_probs=128.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......      ...+|+.|+|||++.
T Consensus       114 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~  192 (327)
T 3lzb_A          114 IGSQYLLNWCVQIAKGMNYLEDRR-LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL  192 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-CcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHc
Confidence            467889999999999999999999 9999999999999999999999999998654321      234577899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||.....     ......+........+...+.++.+||.+||..||.+|||+.
T Consensus       193 ~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  267 (327)
T 3lzb_A          193 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEKGERLPQPPICTIDVYMIMRKCWMIDADSRPKFR  267 (327)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-----GGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH-----HHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            9999999999999999999999 8888865422     222333333334445666788999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ++++.|..+...
T Consensus       268 ell~~L~~~~~~  279 (327)
T 3lzb_A          268 ELIIEFSKMARD  279 (327)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhC
Confidence            999999988764

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.97  E-value=2.7e-32  Score=241.06  Aligned_cols=150  Identities=19%  Similarity=0.249  Sum_probs=121.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      ++|.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||++......   ....||+.|+|||++.+ .
T Consensus       154 l~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~  231 (311)
T 3p1a_A          154 LPEAQVWGYLRDTLLALAHLHSQG-LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-S  231 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCGGGCCGGGGGT-C
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EecCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCccccCHhHhcC-C
Confidence            578999999999999999999999 999999999999999999999999998866543   34468999999999875 7


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++|||||||++|||++|..+|.....       ...+.........+...++.+.+||.+||+.||++|||+.++++
T Consensus       232 ~~~~~DiwslG~il~el~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          232 YGTAADVFSLGLTILEVACNMELPHGGEG-------WQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             CSTHHHHHHHHHHHHHHHHTCCCCSSHHH-------HHHHTTTCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCccH-------HHHHhccCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence            89999999999999999999866654311       11111111111122345678999999999999999999999998


Q ss_pred             HH
Q 019475          158 SL  159 (340)
Q Consensus       158 ~l  159 (340)
                      |.
T Consensus       305 hp  306 (311)
T 3p1a_A          305 LP  306 (311)
T ss_dssp             SG
T ss_pred             Cc
Confidence            63

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=5.2e-32  Score=247.24  Aligned_cols=161  Identities=14%  Similarity=0.151  Sum_probs=123.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC---CCCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      |++.++..|+.||+.||.|||+++ |+||||||+|||++.   ++.+||+|||+++.....   ....||+.|+|||++.
T Consensus       158 l~~~~~~~i~~qi~~aL~~LH~~~-ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~  236 (400)
T 1nxk_A          158 FTEREASEIMKSIGEAIQYLHSIN-IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLG  236 (400)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCCGGGSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccCHhhcC
Confidence            578899999999999999999999 999999999999997   789999999999875543   3456799999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +..++.++|||||||++|+|++|..||...............+.....  .......++.++.+||.+||..||++|||+
T Consensus       237 ~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~  316 (400)
T 1nxk_A          237 PEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI  316 (400)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             CCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCH
Confidence            999999999999999999999999998654221111111111111111  111123567889999999999999999999


Q ss_pred             HHHHHHHHhh
Q 019475          153 KSLVISLMSL  162 (340)
Q Consensus       153 ~e~l~~l~~~  162 (340)
                      .++++|.+-.
T Consensus       317 ~eil~hp~~~  326 (400)
T 1nxk_A          317 TEFMNHPWIM  326 (400)
T ss_dssp             HHHHHSHHHH
T ss_pred             HHHhcCcccc
Confidence            9999986643

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.97  E-value=4.1e-32  Score=246.23  Aligned_cols=159  Identities=25%  Similarity=0.353  Sum_probs=131.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++.....      ....+++.|+|||++.
T Consensus       210 ~~~~~~~~~~~qi~~~l~~LH~~~-ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~  288 (377)
T 3cbl_A          210 LRVKTLLQMVGDAAAGMEYLESKC-CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALN  288 (377)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhc
Confidence            467899999999999999999999 999999999999999999999999999865432      1123467899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++ |..||......     .....+........+..++..+.+||.+||+.||++|||+.
T Consensus       289 ~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~  363 (377)
T 3cbl_A          289 YGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ-----QTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFS  363 (377)
T ss_dssp             HCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence            8899999999999999999998 88887664322     22233333334445666788999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ++++.|+.+.+.
T Consensus       364 ~i~~~L~~i~~~  375 (377)
T 3cbl_A          364 TIYQELQSIRKR  375 (377)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.97  E-value=6.1e-32  Score=236.28  Aligned_cols=159  Identities=20%  Similarity=0.386  Sum_probs=121.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......      ....||+.|+|||++.
T Consensus       117 ~~~~~~~~i~~qi~~~L~~lH~~~-i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  195 (289)
T 3og7_A          117 FEMKKLIDIARQTARGMDYLHAKS-IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIR  195 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhc
Confidence            467899999999999999999999 999999999999999999999999998754421      2346899999999986


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-c---cCCCCchhHHHHHHHHHHhcccCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-L---EGHFSNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~li~~cl~~~p~  147 (340)
                         +..++.++|||||||++|+|++|+.||.......    .....+... .   .......+++.+.+||.+||..+|.
T Consensus       196 ~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  271 (289)
T 3og7_A          196 MQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD----QIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRD  271 (289)
T ss_dssp             ----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH----HHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGG
T ss_pred             ccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH----HHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChh
Confidence               5668889999999999999999999886532211    111111111 1   1123345678899999999999999


Q ss_pred             CCCCHHHHHHHHHhhhh
Q 019475          148 ERPNAKSLVISLMSLQK  164 (340)
Q Consensus       148 ~Rps~~e~l~~l~~~~~  164 (340)
                      +|||+.++++.|+.+.+
T Consensus       272 ~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          272 ERPSFPRILAEIEELAR  288 (289)
T ss_dssp             GSCCHHHHHHHHHHTTC
T ss_pred             hCCCHHHHHHHHHHHhh
Confidence            99999999999988754

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.97  E-value=4.6e-32  Score=236.10  Aligned_cols=159  Identities=21%  Similarity=0.309  Sum_probs=122.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++......     ...+++.|+|||++.+
T Consensus       113 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  191 (281)
T 1mp8_A          113 LDLASLILYAYQLSTALAYLESKR-FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINF  191 (281)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecccccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhccc
Confidence            468899999999999999999999 9999999999999999999999999998654332     2345678999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|+|++ |..||......     .....+........+..+++.+.+++.+||..||++|||+.+
T Consensus       192 ~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  266 (281)
T 1mp8_A          192 RRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN-----DVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTE  266 (281)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG-----GHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH-----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence            899999999999999999997 88887654221     111222222223455667889999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      ++++|+.+...
T Consensus       267 l~~~l~~~~~~  277 (281)
T 1mp8_A          267 LKAQLSTILEE  277 (281)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.97  E-value=4.9e-32  Score=240.91  Aligned_cols=152  Identities=22%  Similarity=0.326  Sum_probs=126.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||++......   ....||+.|+|||++.+..
T Consensus       111 l~~~~~~~~~~qi~~al~~lH~~~-ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  189 (328)
T 3fe3_A          111 MKEKEARSKFRQIVSAVQYCHQKR-IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKK  189 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccCCcceeCcccccCCC
Confidence            467889999999999999999999 999999999999999999999999999865543   3457899999999999887


Q ss_pred             CC-CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VT-PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~-~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      ++ .++|||||||++|+|++|+.||.+........    .+...  ....|...+.++.+|+.+||..||.+|||+.+++
T Consensus       190 ~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~----~i~~~--~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil  263 (328)
T 3fe3_A          190 YDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRE----RVLRG--KYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIM  263 (328)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH----HHHHC--CCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHT
T ss_pred             cCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHH----HHHhC--CCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence            65 78999999999999999999987754332221    11111  1234555678899999999999999999999999


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      +|.
T Consensus       264 ~h~  266 (328)
T 3fe3_A          264 KDR  266 (328)
T ss_dssp             TCT
T ss_pred             cCH
Confidence            874

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.97  E-value=4.9e-32  Score=237.51  Aligned_cols=167  Identities=15%  Similarity=0.166  Sum_probs=131.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE---cCCCCeEEecccCcccCCCC-----------CCcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF---DKDGNPRLSSFGLMKNSRDG-----------KSYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~---~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~   66 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+|||+   +.++.+||+|||++......           ....||+.
T Consensus       102 ~~~~~~~~i~~qi~~~l~~lH~~~-ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~  180 (296)
T 3uzp_A          102 FSLKTVLLLADQMISRIEYIHSKN-FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTAR  180 (296)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccc
Confidence            578899999999999999999999 9999999999999   48889999999999865432           34468999


Q ss_pred             cCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC---CCCchhHHHHHHHHHHhcc
Q 019475           67 FTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG---HFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        67 y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~  143 (340)
                      |+|||++.+..++.++|||||||++|+|++|+.||....... .......+.......   ..+...++.+.+|+.+||+
T Consensus       181 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  259 (296)
T 3uzp_A          181 YASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAAT-KRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRS  259 (296)
T ss_dssp             TCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSS-SSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchh-hhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999886531110 000011111111110   1123456789999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhhccCC
Q 019475          144 SEARERPNAKSLVISLMSLQKEAEVP  169 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~~~~~~~  169 (340)
                      .||.+|||+.++++.|..+......+
T Consensus       260 ~dp~~Rps~~~l~~~l~~~~~~~~~~  285 (296)
T 3uzp_A          260 LRFDDKPDYSYLRQLFRNLFHRQGFS  285 (296)
T ss_dssp             SCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             cCcCcCCCHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999988776543

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.1e-31  Score=234.87  Aligned_cols=163  Identities=17%  Similarity=0.278  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh---CCCceecccCCCCeEEcCCCC-eEEecccCcccCCCC-CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSS---KGRALYHDLNAYRILFDKDGN-PRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~---~~~iih~dlkp~Nil~~~~~~-~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+   ++ |+||||||+||+++.++. +||+|||++...... ....||+.|+|||++.+
T Consensus        99 ~~~~~~~~~~~qi~~~l~~LH~~~~~~-ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~  177 (307)
T 2eva_A           99 YTAAHAMSWCLQCSQGVAYLHSMQPKA-LIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEG  177 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTCSSSC-CCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSCHHHHTC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCCCC-eecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhhCC
Confidence            3567889999999999999999   77 999999999999998887 799999998765433 34468999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ..++.++|||||||++|+|++|+.||.........   .............+...+..+.+++.+||..||.+|||+.++
T Consensus       178 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el  254 (307)
T 2eva_A          178 SNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFR---IMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEI  254 (307)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHH---HHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHH---HHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHH
Confidence            89999999999999999999999988643211111   111111122233445667889999999999999999999999


Q ss_pred             HHHHHhhhhhcc
Q 019475          156 VISLMSLQKEAE  167 (340)
Q Consensus       156 l~~l~~~~~~~~  167 (340)
                      +++|..+.....
T Consensus       255 l~~L~~~~~~~~  266 (307)
T 2eva_A          255 VKIMTHLMRYFP  266 (307)
T ss_dssp             HHHHHHHGGGCC
T ss_pred             HHHHHHHHHhcc
Confidence            999999877653

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.97  E-value=2.9e-32  Score=242.03  Aligned_cols=165  Identities=15%  Similarity=0.237  Sum_probs=127.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC----------CCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK----------GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~----------~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~   64 (340)
                      ++|.+++.|+.||+.||.|||++          + |+||||||+|||++.++.+||+|||+++.....      ....||
T Consensus       118 ~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~-ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt  196 (322)
T 3soc_A          118 VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA-ISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGT  196 (322)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE-EECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccccccccCCC-EEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccC
Confidence            47889999999999999999999          8 999999999999999999999999999764432      234689


Q ss_pred             CccCCccccccC-----CCCCccchhhHHHHHHHHHhCCCCCCcchhHH-------h----hhhhhhHh-hhccccCCC-
Q 019475           65 LAFTPPEYMRTG-----RVTPESVVYSFGTMLLDLLSGKHIPPSHALDL-------I----RSKNFLLL-MDSALEGHF-  126 (340)
Q Consensus        65 ~~y~aPE~~~~~-----~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~-------~----~~~~~~~~-~~~~~~~~~-  126 (340)
                      +.|+|||++.+.     .++.++|||||||++|||++|+.||.+.....       .    ........ ......... 
T Consensus       197 ~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (322)
T 3soc_A          197 RRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLR  276 (322)
T ss_dssp             GGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCC
T ss_pred             ccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCcc
Confidence            999999999863     45678899999999999999998886431100       0    00011111 111111111 


Q ss_pred             ----CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          127 ----SNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       127 ----~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                          ....+..+.+||.+||+.||++|||+.++++.|+.+.+..
T Consensus       277 ~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~~  320 (322)
T 3soc_A          277 DYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLT  320 (322)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             ccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence                2245677999999999999999999999999999987653

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.97  E-value=7.4e-32  Score=236.38  Aligned_cols=164  Identities=18%  Similarity=0.331  Sum_probs=130.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++.....       ....++..|+|||++
T Consensus       111 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  189 (295)
T 3ugc_A          111 IDHIKLLQYTSQICKGMEYLGTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESL  189 (295)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCC-cccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHh
Confidence            467889999999999999999999 999999999999999999999999999865432       123456779999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh-----------hhhhhHhhhccccCCCCchhHHHHHHHHHHhc
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR-----------SKNFLLLMDSALEGHFSNDEGTELVRLASRCL  142 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  142 (340)
                      .+..++.++||||||+++|+|++|..|+.........           .......+........+..+++++.+||.+||
T Consensus       190 ~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  269 (295)
T 3ugc_A          190 TESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECW  269 (295)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHS
T ss_pred             cCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHc
Confidence            9999999999999999999999999877553222111           01122222333344456677889999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhhhhh
Q 019475          143 QSEARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~~~~  165 (340)
                      ..||++|||+.++++.|+.+...
T Consensus       270 ~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          270 NNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CCChhhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999988765

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=5.5e-32  Score=242.63  Aligned_cols=156  Identities=19%  Similarity=0.213  Sum_probs=129.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccc---cCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMR---TGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~---~~~   77 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||++..........||+.|+|||++.   +..
T Consensus       151 l~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~gt~~y~aPE~~~~~~~~~  229 (348)
T 1u5q_A          151 LQEVEIAAVTHGALQGLAYLHSHN-MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQ  229 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHHTTSSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeCCCCHHHEEECCCCCEEEeeccCceecCCCCcccCCcceeCHhhhccccCCC
Confidence            578899999999999999999999 9999999999999999999999999998887777788999999999985   567


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++|||||||++|||++|..||.......    ....+.........+...++.+.+||.+||+.||++|||+.++++
T Consensus       230 ~~~~~DiwslG~il~ell~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~  305 (348)
T 1u5q_A          230 YDGKVDVWSLGITCIELAERKPPLFNMNAMS----ALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  305 (348)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH----HHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCChHH----HHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            8999999999999999999999886543211    111222222222223456778999999999999999999999998


Q ss_pred             HHHh
Q 019475          158 SLMS  161 (340)
Q Consensus       158 ~l~~  161 (340)
                      |.+-
T Consensus       306 h~~~  309 (348)
T 1u5q_A          306 HRFV  309 (348)
T ss_dssp             CHHH
T ss_pred             Chhh
Confidence            8654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.97  E-value=1.2e-32  Score=249.37  Aligned_cols=153  Identities=12%  Similarity=0.051  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-CcccCCccCCcccccc--CCCCCccc
Q 019475            7 LRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-SYSTNLAFTPPEYMRT--GRVTPESV   83 (340)
Q Consensus         7 ~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~y~aPE~~~~--~~~~~~~D   83 (340)
                      +.++.||+.||.|||+++ |+||||||+|||++.+|.+||+|||+++...... ...+|+.|+|||++.+  ..++.++|
T Consensus       197 ~~i~~qi~~aL~~LH~~~-ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~D  275 (371)
T 3q60_A          197 HILTAQLIRLAANLQSKG-LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALN  275 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTT-EEETTCSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCC-CccCcCCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCcccc
Confidence            677899999999999999 9999999999999999999999999998776554 5567899999999987  67899999


Q ss_pred             hhhHHHHHHHHHhCCCCCCcchhHHhhhhh---hhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475           84 VYSFGTMLLDLLSGKHIPPSHALDLIRSKN---FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus        84 i~slG~~~~el~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ||||||++|+|++|+.||............   .................++.+.+||.+||..||++|||+.++++|.+
T Consensus       276 iwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~  355 (371)
T 3q60_A          276 AWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPE  355 (371)
T ss_dssp             HHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHH
Confidence            999999999999999988765222111000   00011111111222466789999999999999999999999997643

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.97  E-value=1e-31  Score=232.19  Aligned_cols=159  Identities=18%  Similarity=0.283  Sum_probs=129.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.|+.||+.||.|||+++ ++||||||+||+++.++.+||+|||++.......     ...+|+.|+|||++.+
T Consensus       101 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  179 (268)
T 3sxs_A          101 LEPSQLLEMCYDVCEGMAFLESHQ-FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHY  179 (268)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhc
Confidence            578899999999999999999999 9999999999999999999999999998655432     2345677999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |..||........     ...+........+...++.+.+++.+||..+|.+|||+.+
T Consensus       180 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  254 (268)
T 3sxs_A          180 FKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEV-----VLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQ  254 (268)
T ss_dssp             SEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHH-----HHHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             cCCchhhhhHHHHHHHHHHHcCCCCCccccChHHH-----HHHHHcCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHH
Confidence            899999999999999999999 8888765432211     1111222222334456778999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      ++++|+.+...
T Consensus       255 ll~~L~~l~~~  265 (268)
T 3sxs_A          255 LLSSIEPLREK  265 (268)
T ss_dssp             HHHHHGGGCC-
T ss_pred             HHHHHHHhhhc
Confidence            99999887654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.97  E-value=6.5e-32  Score=244.42  Aligned_cols=160  Identities=23%  Similarity=0.293  Sum_probs=123.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......       ...+++.|+|||++
T Consensus       144 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~  222 (373)
T 2qol_A          144 FTVIQLVGMLRGIASGMKYLSDMG-YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAI  222 (373)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhh
Confidence            478899999999999999999999 9999999999999999999999999998654321       11346789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|||++ |..||......     .....+........+..++..+.+|+.+||+.||.+||++
T Consensus       223 ~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~  297 (373)
T 2qol_A          223 AYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ-----DVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKF  297 (373)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH-----HHHHHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSCCH
T ss_pred             ccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCccccHHHHHHHHHHhCcChhhCcCH
Confidence            99999999999999999999998 88888654322     2222333333344455677889999999999999999999


Q ss_pred             HHHHHHHHhhhhhc
Q 019475          153 KSLVISLMSLQKEA  166 (340)
Q Consensus       153 ~e~l~~l~~~~~~~  166 (340)
                      .++++.|+.+....
T Consensus       298 ~~i~~~L~~~~~~~  311 (373)
T 2qol_A          298 EQIVSILDKLIRNP  311 (373)
T ss_dssp             HHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHhCc
Confidence            99999999987653

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=7.8e-32  Score=233.12  Aligned_cols=159  Identities=18%  Similarity=0.294  Sum_probs=131.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....     ....+++.|+|||++.+
T Consensus       103 ~~~~~~~~i~~~i~~~l~~lH~~~-i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  181 (269)
T 4hcu_A          103 FAAETLLGMCLDVCEGMAYLEEAC-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF  181 (269)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-eecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcC
Confidence            467889999999999999999999 999999999999999999999999999865432     23456778999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |..||........     ...+........+...+..+.+++.+||..+|++|||+.+
T Consensus       182 ~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  256 (269)
T 4hcu_A          182 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEV-----VEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSR  256 (269)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH-----HHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHH-----HHHHhcCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHH
Confidence            999999999999999999999 8888765432221     1222222333345556788999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      ++++|..+.+.
T Consensus       257 ll~~l~~l~~~  267 (269)
T 4hcu_A          257 LLRQLAEIAES  267 (269)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHc
Confidence            99999988654

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.97  E-value=1.9e-31  Score=237.86  Aligned_cols=152  Identities=19%  Similarity=0.318  Sum_probs=127.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++....    ..+..||+.|+|||++.+.
T Consensus       102 ~~~~~~~~~~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  180 (337)
T 1o6l_A          102 FTEERARFYGAEIVSALEYLHSRD-VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDN  180 (337)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCC
Confidence            467888999999999999999999 99999999999999999999999999986432    2345789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----C
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----N  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s  151 (340)
                      .++.++|||||||++|||++|..||.........    ..+...  ...++...++++.+||.+||..||.+||     +
T Consensus       181 ~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~----~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~  254 (337)
T 1o6l_A          181 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF----ELILME--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSD  254 (337)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHC--CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTT
T ss_pred             CCCchhhcccchhHHHHHhcCCCCCCCCCHHHHH----HHHHcC--CCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCC
Confidence            9999999999999999999999998765332221    111111  1234556778999999999999999999     8


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|.
T Consensus       255 ~~ei~~h~  262 (337)
T 1o6l_A          255 AKEVMEHR  262 (337)
T ss_dssp             HHHHHTSG
T ss_pred             HHHHHcCC
Confidence            99999874

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=8.7e-32  Score=235.06  Aligned_cols=164  Identities=17%  Similarity=0.214  Sum_probs=136.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......       ....+|+.|+|||++
T Consensus       107 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  185 (287)
T 1u59_A          107 IPVSNVAELLHQVSMGMKYLEEKN-FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI  185 (287)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHh
Confidence            478899999999999999999999 999999999999999999999999999866432       223457889999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|+|++ |..||.......     ....+........+..+++.+.++|.+||..+|++|||+
T Consensus       186 ~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  260 (287)
T 1u59_A          186 NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE-----VMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDF  260 (287)
T ss_dssp             HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH-----HHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCH
T ss_pred             ccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH-----HHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCH
Confidence            98889999999999999999998 998886543221     222222233344566778899999999999999999999


Q ss_pred             HHHHHHHHhhhhhccCCc
Q 019475          153 KSLVISLMSLQKEAEVPS  170 (340)
Q Consensus       153 ~e~l~~l~~~~~~~~~~~  170 (340)
                      .+++++|+.+..+...+.
T Consensus       261 ~~l~~~l~~~~~~~~~~~  278 (287)
T 1u59_A          261 LTVEQRMRACYYSLASKV  278 (287)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCCcc
Confidence            999999999988876654

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2e-31  Score=237.88  Aligned_cols=166  Identities=16%  Similarity=0.210  Sum_probs=127.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC--------CCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK--------GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~--------~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~   64 (340)
                      +++.+++.++.|++.||.|||++        + |+||||||+|||++.++.+||+|||+++.....        ....||
T Consensus       131 ~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~-ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt  209 (337)
T 3mdy_A          131 LDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPA-IAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGT  209 (337)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCC-EECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCC-EEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccC
Confidence            46789999999999999999998        8 999999999999999999999999999765432        234789


Q ss_pred             CccCCccccccCCCCCc------cchhhHHHHHHHHHhC----------CCCCCcchhHHhhhhhhhHhh-hccccCCCC
Q 019475           65 LAFTPPEYMRTGRVTPE------SVVYSFGTMLLDLLSG----------KHIPPSHALDLIRSKNFLLLM-DSALEGHFS  127 (340)
Q Consensus        65 ~~y~aPE~~~~~~~~~~------~Di~slG~~~~el~~g----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  127 (340)
                      +.|+|||++.+...+..      +|||||||++|||++|          ..||................. ........+
T Consensus       210 ~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (337)
T 3mdy_A          210 KRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFP  289 (337)
T ss_dssp             GGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCC
T ss_pred             cceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCcccc
Confidence            99999999987766665      9999999999999999          545433211111111111111 111122222


Q ss_pred             -----chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhhhcc
Q 019475          128 -----NDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAE  167 (340)
Q Consensus       128 -----~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~~  167 (340)
                           ..+++.+.+||.+||+.||.+|||+.+++++|+.+.....
T Consensus       290 ~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~  334 (337)
T 3mdy_A          290 NRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQD  334 (337)
T ss_dssp             GGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTT
T ss_pred             ccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhcc
Confidence                 3677889999999999999999999999999999887653

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.97  E-value=8.5e-32  Score=237.97  Aligned_cols=159  Identities=19%  Similarity=0.313  Sum_probs=131.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....      ....+++.|+|||++.
T Consensus       147 ~~~~~~~~i~~qi~~~l~~lH~~~-ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  225 (314)
T 2ivs_A          147 LTMGDLISFAWQISQGMQYLAEMK-LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLF  225 (314)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-CcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhc
Confidence            367789999999999999999999 999999999999999999999999999865433      2234578899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......     .....+........+...++.+.+++.+||..||.+|||+.
T Consensus       226 ~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~  300 (314)
T 2ivs_A          226 DHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPE-----RLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFA  300 (314)
T ss_dssp             HCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-----GHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHH
Confidence            8889999999999999999999 88887654322     22222333333445566788999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      +++++|+.+...
T Consensus       301 ~l~~~l~~~~~~  312 (314)
T 2ivs_A          301 DISKDLEKMMVK  312 (314)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999987653

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.97  E-value=3.2e-32  Score=244.09  Aligned_cols=163  Identities=18%  Similarity=0.167  Sum_probs=126.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC--CeEEecccCcccCCCC-----------CCcccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG--NPRLSSFGLMKNSRDG-----------KSYSTNLAF   67 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~-----------~~~~~~~~y   67 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++  .+||+|||+++.....           ....||+.|
T Consensus       148 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y  226 (345)
T 2v62_A          148 FKKSTVLQLGIRMLDVLEYIHENE-YVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEF  226 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccc
Confidence            578899999999999999999999 99999999999999887  9999999999765321           234689999


Q ss_pred             CCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHh----hhccccC-CCCchhHHHHHHHHHHhc
Q 019475           68 TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL----MDSALEG-HFSNDEGTELVRLASRCL  142 (340)
Q Consensus        68 ~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~li~~cl  142 (340)
                      +|||++.+..++.++|||||||++|||++|+.||................    +...... ......++++.++|.+||
T Consensus       227 ~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  306 (345)
T 2v62_A          227 TSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAH  306 (345)
T ss_dssp             CCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHH
T ss_pred             cCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHh
Confidence            99999999889999999999999999999999985532111111111111    1111000 011145678999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhhhh
Q 019475          143 QSEARERPNAKSLVISLMSLQK  164 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~~~  164 (340)
                      ..||++|||+.++++.|+.+..
T Consensus       307 ~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          307 SLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             TCCTTCCCCHHHHHHHHCTTCC
T ss_pred             hcCcccCCCHHHHHHHHhccCC
Confidence            9999999999999999876543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.97  E-value=7.3e-32  Score=236.30  Aligned_cols=167  Identities=15%  Similarity=0.157  Sum_probs=132.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE---cCCCCeEEecccCcccCCCC-----------CCcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF---DKDGNPRLSSFGLMKNSRDG-----------KSYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~---~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~   66 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||+   +.++.+||+|||+++.....           ....+|+.
T Consensus       102 ~~~~~~~~i~~qi~~~l~~LH~~~-ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~  180 (296)
T 4hgt_A          102 FSLKTVLLLADQMISRIEYIHSKN-FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTAR  180 (296)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCcc
Confidence            578899999999999999999999 9999999999999   78899999999999865432           23468999


Q ss_pred             cCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC---CCCchhHHHHHHHHHHhcc
Q 019475           67 FTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG---HFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        67 y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~  143 (340)
                      |+|||++.+..++.++|||||||++|+|++|+.||........ ..............   ......++.+.+|+.+||+
T Consensus       181 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  259 (296)
T 4hgt_A          181 YASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK-RQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRS  259 (296)
T ss_dssp             GCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSS-SSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHT
T ss_pred             ccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhh-hhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999865321100 00111111111111   1113346789999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhhccCC
Q 019475          144 SEARERPNAKSLVISLMSLQKEAEVP  169 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~~~~~~~  169 (340)
                      .||++|||+.++++.|..+.......
T Consensus       260 ~~p~~Rpt~~~l~~~l~~~~~~~~~~  285 (296)
T 4hgt_A          260 LRFDDKPDYSYLRQLFRNLFHRQGFS  285 (296)
T ss_dssp             SCTTCCCCHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999988876543

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=240.85  Aligned_cols=168  Identities=17%  Similarity=0.120  Sum_probs=132.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC--CeEEecccCcccCCCC-----------CCcccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG--NPRLSSFGLMKNSRDG-----------KSYSTNLAF   67 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~~-----------~~~~~~~~y   67 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++  .+||+|||+++.....           ....||+.|
T Consensus       156 l~~~~~~~i~~qi~~~L~~LH~~~-ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y  234 (352)
T 2jii_A          156 LSERSVLQVACRLLDALEFLHENE-YVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEF  234 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccc
Confidence            578899999999999999999999 99999999999999998  8999999999754422           234689999


Q ss_pred             CCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc---cCC--CCchhHHHHHHHHHHhc
Q 019475           68 TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL---EGH--FSNDEGTELVRLASRCL  142 (340)
Q Consensus        68 ~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~li~~cl  142 (340)
                      +|||++.+..++.++|||||||++|+|++|+.||.....................   ...  .....++.+.+||.+||
T Consensus       235 ~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  314 (352)
T 2jii_A          235 ISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVM  314 (352)
T ss_dssp             CCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHH
T ss_pred             cCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHH
Confidence            9999999989999999999999999999999988764211111111111111111   000  11234688999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhhhhhccCC
Q 019475          143 QSEARERPNAKSLVISLMSLQKEAEVP  169 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~~~~~~~~  169 (340)
                      ..||++|||+.++++.|..+.......
T Consensus       315 ~~dp~~Rps~~~l~~~L~~~~~~~~~~  341 (352)
T 2jii_A          315 ALTYEEKPPYAMLRNNLEALLQDLRVS  341 (352)
T ss_dssp             TCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             hCChhhCCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999988876543

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.97  E-value=1.6e-31  Score=233.96  Aligned_cols=158  Identities=16%  Similarity=0.205  Sum_probs=122.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+.
T Consensus        98 l~~~~~~~~~~ql~~~l~~lH~~~-ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  176 (292)
T 3o0g_A           98 LDPEIVKSFLFQLLKGLGFCHSRN-VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA  176 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCC
Confidence            567889999999999999999999 999999999999999999999999999865432    345679999999999876


Q ss_pred             C-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc------------------------ccCCCCchhH
Q 019475           77 R-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA------------------------LEGHFSNDEG  131 (340)
Q Consensus        77 ~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~  131 (340)
                      . ++.++|||||||++|+|++|..||............+.......                        ......+..+
T Consensus       177 ~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (292)
T 3o0g_A          177 KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLN  256 (292)
T ss_dssp             SCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCC
T ss_pred             CCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccC
Confidence            6 79999999999999999998877544321111111111110000                        0001123456


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ..+.+||.+||+.||++|||+.|+++|-
T Consensus       257 ~~~~~li~~~L~~dP~~R~t~~e~l~hp  284 (292)
T 3o0g_A          257 ATGRDLLQNLLKCNPVQRISAEEALQHP  284 (292)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             hHHHHHHHHHhccChhhCCCHHHHhcCc
Confidence            7899999999999999999999999873

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.97  E-value=1.2e-31  Score=249.06  Aligned_cols=159  Identities=14%  Similarity=0.187  Sum_probs=119.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....   ....||+.|+|||++.+..
T Consensus       161 l~~~~~~~~~~qil~aL~~lH~~~-iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  239 (464)
T 3ttj_A          161 LDHERMSYLLYQMLCGIKHLHSAG-IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  239 (464)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTSCEEECCCCCC-----CCCC----CCCTTCCHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCC
Confidence            467889999999999999999999 999999999999999999999999999876543   3457899999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh------------------Hhhhcccc-C------CCCc----
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL------------------LLMDSALE-G------HFSN----  128 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~------------------~~~~~~~~-~------~~~~----  128 (340)
                      ++.++|||||||++|||++|+.||.+......-.....                  ..+..... .      .++.    
T Consensus       240 ~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (464)
T 3ttj_A          240 YKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFP  319 (464)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSC
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccc
Confidence            99999999999999999999999976532111100000                  00000000 0      0000    


Q ss_pred             -------hhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          129 -------DEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       129 -------~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                             ..++++.+||.+||..||.+|||+.|+++|.+
T Consensus       320 ~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~  358 (464)
T 3ttj_A          320 ADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPY  358 (464)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTT
T ss_pred             cccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChh
Confidence                   12677999999999999999999999998843

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.97  E-value=1.6e-31  Score=236.25  Aligned_cols=160  Identities=20%  Similarity=0.274  Sum_probs=127.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......      ....+++.|+|||.+.
T Consensus       144 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  222 (313)
T 3brb_A          144 IPLQTLLKFMVDIALGMEYLSNRN-FLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLA  222 (313)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-CCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhc
Confidence            477899999999999999999999 999999999999999999999999998765432      2234578899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......     .....+........+...+..+.++|.+||..+|.+|||+.
T Consensus       223 ~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  297 (313)
T 3brb_A          223 DRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH-----EMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFS  297 (313)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-----GHHHHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             CCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH-----HHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHH
Confidence            9899999999999999999999 77777654222     11122222223344556778899999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      +++++|..+....
T Consensus       298 ~l~~~L~~l~~~l  310 (313)
T 3brb_A          298 VLRLQLEKLLESL  310 (313)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887653

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=7.3e-32  Score=241.57  Aligned_cols=161  Identities=22%  Similarity=0.343  Sum_probs=131.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||++| |+||||||+||+++.++.+||+|||++.......      ...+|+.|+|||++.
T Consensus       169 l~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~  247 (344)
T 1rjb_A          169 LTFEDLLCFAYQVAKGMEFLEFKS-CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLF  247 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhc
Confidence            478889999999999999999999 9999999999999999999999999997654332      234577899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......    ......+........+...++.+.+||.+||..||.+|||+.
T Consensus       248 ~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  323 (344)
T 1rjb_A          248 EGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD----ANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFP  323 (344)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS----HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcH----HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence            9999999999999999999998 88887654221    122233333334445566778999999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      +++++|+.+....
T Consensus       324 ~l~~~l~~~~~~~  336 (344)
T 1rjb_A          324 NLTSFLGCQLADA  336 (344)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876654

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.9e-31  Score=232.83  Aligned_cols=162  Identities=20%  Similarity=0.282  Sum_probs=131.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC--------CCCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--------GKSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~--------~~~~~~~~~y~aPE~   72 (340)
                      +++.+++.|+.||+.||.|||++| ++||||||+||+++.++.+||+|||+++....        .....+++.|+|||.
T Consensus       121 ~~~~~~~~i~~qi~~~l~~LH~~~-i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  199 (298)
T 3pls_A          121 PTVKDLISFGLQVARGMEYLAEQK-FVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALES  199 (298)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhh
Confidence            467889999999999999999999 99999999999999999999999999975432        223456789999999


Q ss_pred             cccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           73 MRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        73 ~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +.+..++.++|||||||++|+|++|..|+....    ........+........+...+..+.+++.+||..||.+|||+
T Consensus       200 ~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  275 (298)
T 3pls_A          200 LQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI----DPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTF  275 (298)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS----CGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hccCCCChhhchhhHHHHHHHHhhCCCCCCccC----CHHHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhhCcCH
Confidence            999999999999999999999999766554321    1122222222233334455667889999999999999999999


Q ss_pred             HHHHHHHHhhhhhcc
Q 019475          153 KSLVISLMSLQKEAE  167 (340)
Q Consensus       153 ~e~l~~l~~~~~~~~  167 (340)
                      .++++.|+.+.....
T Consensus       276 ~~ll~~l~~~~~~l~  290 (298)
T 3pls_A          276 RVLVGEVEQIVSALL  290 (298)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999877653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.97  E-value=1.6e-31  Score=247.74  Aligned_cols=159  Identities=23%  Similarity=0.371  Sum_probs=131.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+|||++.++.+||+|||+++..... ....+++.|+|||++.+..++
T Consensus       286 ~~~~~~~~~~~qi~~~l~~LH~~~-ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~  364 (450)
T 1k9a_A          286 LGGDCLLKFSLDVCEAMEYLEGNN-FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFS  364 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHHHHSSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCC
Confidence            467889999999999999999999 999999999999999999999999999865433 233567899999999999999


Q ss_pred             CccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .++|||||||++|||++ |..||+....     ......+........+..+++.+.+||.+||..||.+|||+.++++.
T Consensus       365 ~~sDvwslG~~l~el~t~g~~P~~~~~~-----~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~  439 (450)
T 1k9a_A          365 TKSDVWSFGILLWEIYSFGRVPYPRIPL-----KDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQ  439 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSSTTSCT-----TTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            99999999999999998 9988865422     22222333334445567788999999999999999999999999999


Q ss_pred             HHhhhhh
Q 019475          159 LMSLQKE  165 (340)
Q Consensus       159 l~~~~~~  165 (340)
                      |+.+...
T Consensus       440 L~~i~~~  446 (450)
T 1k9a_A          440 LEHIRTH  446 (450)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9887654

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.97  E-value=2e-31  Score=234.01  Aligned_cols=155  Identities=17%  Similarity=0.211  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+.
T Consensus       134 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  212 (298)
T 2zv2_A          134 LSEDQARFYFQDLIKGIEYLHYQK-IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSET  212 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccC
Confidence            578899999999999999999999 999999999999999999999999999876543    345789999999999866


Q ss_pred             C---CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           77 R---VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        77 ~---~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .   ++.++|||||||++|+|++|..||.........    ..+.............++.+.+||.+||..||++|||+.
T Consensus       213 ~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~  288 (298)
T 2zv2_A          213 RKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLH----SKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVP  288 (298)
T ss_dssp             CCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHH
T ss_pred             CCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHH----HHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHH
Confidence            5   377899999999999999999998765332211    111111122122345678899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      ++++|.+
T Consensus       289 e~l~hp~  295 (298)
T 2zv2_A          289 EIKLHPW  295 (298)
T ss_dssp             HHTTCHH
T ss_pred             HHhcCcc
Confidence            9988743

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.97  E-value=8.4e-32  Score=239.93  Aligned_cols=154  Identities=20%  Similarity=0.246  Sum_probs=127.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||++......   ....||+.|+|||++.+..
T Consensus       105 l~~~~~~~i~~qi~~aL~~LH~~g-ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~  183 (336)
T 3h4j_B          105 MTEDEGRRFFQQIICAIEYCHRHK-IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKL  183 (336)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHT-CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEecCCchhhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCC
Confidence            578899999999999999999999 999999999999999999999999999865543   3457899999999998877


Q ss_pred             C-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 V-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      + ++++|||||||++|+|++|..||........     ...+.. .....+...++.+.+||.+||..||.+|||+.+++
T Consensus       184 ~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-----~~~i~~-~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil  257 (336)
T 3h4j_B          184 YAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL-----FKKVNS-CVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIR  257 (336)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-----BCCCCS-SCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHT
T ss_pred             CCCCccchhHHHHHHHHHHhCCCCCCCccHHHH-----HHHHHc-CCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence            6 6899999999999999999999865422211     111111 11234556678899999999999999999999999


Q ss_pred             HHHHh
Q 019475          157 ISLMS  161 (340)
Q Consensus       157 ~~l~~  161 (340)
                      +|.+-
T Consensus       258 ~hp~~  262 (336)
T 3h4j_B          258 RDPWF  262 (336)
T ss_dssp             TCHHH
T ss_pred             hChhh
Confidence            88654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.97  E-value=1.8e-31  Score=232.46  Aligned_cols=159  Identities=22%  Similarity=0.330  Sum_probs=131.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.|+.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....     ....+|+.|+|||++.+
T Consensus       117 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  195 (283)
T 3gen_A          117 FQTQQLLEMCKDVCEAMEYLESKQ-FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMY  195 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhcc
Confidence            477899999999999999999999 999999999999999999999999999865432     23345778999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |+.||.......     ....+........+...++.+.+++.+||..+|.+|||+.+
T Consensus       196 ~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  270 (283)
T 3gen_A          196 SKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE-----TAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKI  270 (283)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-----HHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCccccChhH-----HHHHHhcccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHH
Confidence            899999999999999999998 888876543221     11222222333345556788999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      ++++|..+...
T Consensus       271 ll~~L~~~~~~  281 (283)
T 3gen_A          271 LLSNILDVMDE  281 (283)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999987654

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.97  E-value=8.1e-32  Score=241.09  Aligned_cols=160  Identities=22%  Similarity=0.292  Sum_probs=129.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC------CCCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD------GKSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++....      .....+|+.|+|||++.
T Consensus       171 l~~~~~~~i~~qi~~~l~~LH~~~-ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~  249 (343)
T 1luf_A          171 LSCAEQLCIARQVAAGMAYLSERK-FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF  249 (343)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhc
Confidence            467889999999999999999999 99999999999999999999999999875432      23345788999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||........     ...+........+..++..+.+||.+||..||.+|||+.
T Consensus       250 ~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~  324 (343)
T 1luf_A          250 YNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEV-----IYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFC  324 (343)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH-----HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHHH-----HHHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHH
Confidence            8899999999999999999999 8888866432221     111112222234556778899999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      +++++|+.+....
T Consensus       325 ~~~~~L~~~~~~~  337 (343)
T 1luf_A          325 SIHRILQRMCERA  337 (343)
T ss_dssp             HHHHHHHHTTC--
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999877654

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.97  E-value=1.4e-31  Score=233.08  Aligned_cols=159  Identities=21%  Similarity=0.271  Sum_probs=129.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......     ....+++.|+|||++.+
T Consensus       110 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  188 (281)
T 3cc6_A          110 LKVLTLVLYSLQICKAMAYLESIN-CVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINF  188 (281)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhcc
Confidence            467889999999999999999999 999999999999999999999999998865433     22345778999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |+.||......     .....+........+...++.+.+++.+||..||++|||+.+
T Consensus       189 ~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~e  263 (281)
T 3cc6_A          189 RRFTTASDVWMFAVCMWEILSFGKQPFFWLENK-----DVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTE  263 (281)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG-----GHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCchhccHHHHHHHHHHHhCCCCCcccCChH-----HHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHH
Confidence            899999999999999999998 99888643221     112222222223345566788999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      ++++|+.+...
T Consensus       264 ll~~L~~~~~~  274 (281)
T 3cc6_A          264 LVCSLSDVYQM  274 (281)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.97  E-value=8e-32  Score=239.71  Aligned_cols=165  Identities=21%  Similarity=0.294  Sum_probs=133.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+||+++.++.+||+|||++.......       ...+|..|+|||++
T Consensus       124 ~~~~~~~~i~~qi~~al~~lH~~~-ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  202 (327)
T 3lxl_A          124 LDASRLLLYSSQICKGMEYLGSRR-CVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESL  202 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHh
Confidence            578899999999999999999999 9999999999999999999999999998665332       23467789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh----------hhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS----------KNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      .+..++.++|||||||++|+|++|..||..........          ......+........+..+++.+.+||.+||.
T Consensus       203 ~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  282 (327)
T 3lxl_A          203 SDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWA  282 (327)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTC
T ss_pred             ccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHHHHHHHHHHcC
Confidence            98889999999999999999999998876543322111          12223333334445566778899999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhhc
Q 019475          144 SEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                      .||.+|||+.+++++|+.+....
T Consensus       283 ~dP~~Rps~~ell~~L~~~~~~~  305 (327)
T 3lxl_A          283 PSPQDRPSFSALGPQLDMLWSGS  305 (327)
T ss_dssp             SSGGGSCCHHHHHHHHHHC----
T ss_pred             CChhhCcCHHHHHHHHHHHHhhh
Confidence            99999999999999999886654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.97  E-value=1.4e-31  Score=248.40  Aligned_cols=159  Identities=19%  Similarity=0.318  Sum_probs=132.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....     ....+++.|+|||++.+
T Consensus       281 ~~~~~~~~~~~qi~~~l~~LH~~~-ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~  359 (454)
T 1qcf_A          281 QPLPKLIDFSAQIAEGMAFIEQRN-YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINF  359 (454)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhcc
Confidence            467789999999999999999999 999999999999999999999999999875432     23345778999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||++ |+.||.......     ....+........+..+++.+.+||.+||..||++|||+.+
T Consensus       360 ~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~  434 (454)
T 1qcf_A          360 GSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE-----VIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEY  434 (454)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-----HHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            999999999999999999999 998887643222     22222333344456677889999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      ++..|+.+...
T Consensus       435 i~~~L~~~~~~  445 (454)
T 1qcf_A          435 IQSVLDDFYTA  445 (454)
T ss_dssp             HHHHHHTSSSS
T ss_pred             HHHHHHHHHhc
Confidence            99999887654

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=1.6e-32  Score=251.75  Aligned_cols=145  Identities=15%  Similarity=0.116  Sum_probs=118.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccc-------
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYM-------   73 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~-------   73 (340)
                      ++..++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++..... ....| +.|+|||++       
T Consensus       209 ~~~~~~~i~~qi~~aL~~LH~~~-iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~  286 (413)
T 3dzo_A          209 VHHARLQLTLQVIRLLASLHHYG-LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIG-RGFAPPETTAERMLPF  286 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECTTCCEEECCGGGCEETTEEECCCCC-TTTCCHHHHHHHTSTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-cccCCcccceEEEecCCeEEEEeccceeecCCccccCCC-CceeCchhhhcccccc
Confidence            46788999999999999999999 999999999999999999999999998865543 34466 999999999       


Q ss_pred             ---ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           74 ---RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        74 ---~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                         .+..++.++|||||||++|||++|+.||.......        .....+..  ....++.+.+||.+||..||++||
T Consensus       287 ~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~--------~~~~~~~~--~~~~~~~~~~li~~~l~~dP~~Rp  356 (413)
T 3dzo_A          287 GQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALG--------GSEWIFRS--CKNIPQPVRALLEGFLRYPKEDRL  356 (413)
T ss_dssp             GGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGS--------CSGGGGSS--CCCCCHHHHHHHHHHTCSSGGGSC
T ss_pred             ccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhh--------hHHHHHhh--cccCCHHHHHHHHHHccCChhhCc
Confidence               55568889999999999999999999886543211        11111111  124457899999999999999999


Q ss_pred             CHHHHHHH
Q 019475          151 NAKSLVIS  158 (340)
Q Consensus       151 s~~e~l~~  158 (340)
                      |+.+++++
T Consensus       357 t~~~~l~~  364 (413)
T 3dzo_A          357 LPLQAMET  364 (413)
T ss_dssp             CHHHHTTS
T ss_pred             CHHHHHhC
Confidence            99998765

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=7.7e-32  Score=245.41  Aligned_cols=156  Identities=21%  Similarity=0.279  Sum_probs=120.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC-----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-----------------------   57 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-----------------------   57 (340)
                      +++..+..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++....                       
T Consensus       106 ~~~~~~~~i~~qi~~~L~~LH~~~-ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (388)
T 3oz6_A          106 LEPVHKQYVVYQLIKVIKYLHSGG-LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQ  184 (388)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC----------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEeCCCCHHHeEEcCCCCEEecCCccccccccccccccccccccccccccccccc
Confidence            467788899999999999999999 99999999999999999999999999976432                       


Q ss_pred             --CCCcccCCccCCcccccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh---------------
Q 019475           58 --GKSYSTNLAFTPPEYMRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD---------------  119 (340)
Q Consensus        58 --~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~---------------  119 (340)
                        .....||+.|+|||++.+ ..++.++|||||||++|||++|++||++......-.... ..+.               
T Consensus       185 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~-~~~~~p~~~~~~~~~~~~~  263 (388)
T 3oz6_A          185 PILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERII-GVIDFPSNEDVESIQSPFA  263 (388)
T ss_dssp             -----CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH-HHHCCCCHHHHHTSCCSSH
T ss_pred             ccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HhcCCCCHHHHHhccCHHH
Confidence              123468999999999986 578999999999999999999999987653221111000 0000               


Q ss_pred             ---------------cccc------------CCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          120 ---------------SALE------------GHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       120 ---------------~~~~------------~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                                     ....            ...+...++++.+||.+||..||.+|||+.++++|
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~H  329 (388)
T 3oz6_A          264 KTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKH  329 (388)
T ss_dssp             HHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             HHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCC
Confidence                           0000            00112446789999999999999999999999987

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.97  E-value=7.7e-32  Score=250.86  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=130.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE---cCCCCeEEecccCcccCCCC-----------CCcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF---DKDGNPRLSSFGLMKNSRDG-----------KSYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~---~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~   66 (340)
                      |++.+++.|+.||+.||.|||+++ ||||||||+||||   +.++.+||+|||+++.....           ....||+.
T Consensus       100 l~~~~~~~i~~qi~~aL~yLH~~g-IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~  178 (483)
T 3sv0_A          100 LSLKTVLMLADQMINRVEFVHSKS-FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTAR  178 (483)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCcc
Confidence            578999999999999999999999 9999999999999   58899999999999865432           24568999


Q ss_pred             cCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc---CCCCchhHHHHHHHHHHhcc
Q 019475           67 FTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE---GHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        67 y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~cl~  143 (340)
                      |+|||++.+..++.++|||||||++|||++|+.||........ ...+..+......   ......++.++.+||.+||.
T Consensus       179 Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~  257 (483)
T 3sv0_A          179 YASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTK-KQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRS  257 (483)
T ss_dssp             TCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSH-HHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHT
T ss_pred             ccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhH-HHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999865321100 0001111111110   01112445789999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhhcc
Q 019475          144 SEARERPNAKSLVISLMSLQKEAE  167 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~~~~~  167 (340)
                      .+|.+||++.+|++.|+.+.....
T Consensus       258 ~dP~~RPs~~el~~~L~~l~~~~~  281 (483)
T 3sv0_A          258 LRFDDKPDYSYLKRLFRDLFIREG  281 (483)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             CChhhCcCHHHHHHHHHHHHHHcC
Confidence            999999999999999998866543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.97  E-value=1e-31  Score=240.59  Aligned_cols=157  Identities=20%  Similarity=0.296  Sum_probs=124.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||++ ++.+||+|||+++.....      ....||+.|+|||++.
T Consensus       105 ~~~~~~~~i~~qi~~al~~lH~~~-iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~  182 (343)
T 3dbq_A          105 IDPWERKSYWKNMLEAVHTIHQHG-IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIK  182 (343)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHh
Confidence            467889999999999999999999 99999999999997 678999999999865433      2446899999999986


Q ss_pred             c-----------CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           75 T-----------GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        75 ~-----------~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      +           ..++.++|||||||++|+|++|+.||......   .......+.......++...+..+.+||.+||.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  259 (343)
T 3dbq_A          183 DMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ---ISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLK  259 (343)
T ss_dssp             HCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH---HHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTC
T ss_pred             hccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH---HHHHHHHhcCCcccCCcccCCHHHHHHHHHHcC
Confidence            5           66888999999999999999999988653211   112233333344445566667789999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhh
Q 019475          144 SEARERPNAKSLVISLMSL  162 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~  162 (340)
                      .||.+|||+.++++|.+-.
T Consensus       260 ~dp~~Rpt~~e~l~hp~~~  278 (343)
T 3dbq_A          260 RDPKQRISIPELLAHPYVQ  278 (343)
T ss_dssp             SSTTTSCCHHHHHTSHHHH
T ss_pred             CChhHCCCHHHHHhCcccc
Confidence            9999999999999986543

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.97  E-value=1.7e-31  Score=235.84  Aligned_cols=161  Identities=21%  Similarity=0.362  Sum_probs=132.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++.......      ...+|+.|+|||++.
T Consensus       142 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  220 (313)
T 1t46_A          142 LDLEDLLSFSYQVAKGMAFLASKN-CIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF  220 (313)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhc
Confidence            467899999999999999999999 9999999999999999999999999998665432      234577899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......    ......+........+...+..+.+++.+||..||.+|||+.
T Consensus       221 ~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  296 (313)
T 1t46_A          221 NCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD----SKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFK  296 (313)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSS----HHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHhCCCCCCCcccch----hHHHHHhccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHH
Confidence            9999999999999999999999 88887654221    112222333333344556778899999999999999999999


Q ss_pred             HHHHHHHhhhhhc
Q 019475          154 SLVISLMSLQKEA  166 (340)
Q Consensus       154 e~l~~l~~~~~~~  166 (340)
                      +++++|+.+....
T Consensus       297 ell~~L~~~~~~~  309 (313)
T 1t46_A          297 QIVQLIEKQISES  309 (313)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887653

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.97  E-value=2.2e-31  Score=237.51  Aligned_cols=162  Identities=20%  Similarity=0.326  Sum_probs=133.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++.....      ....+++.|+|||++.
T Consensus       154 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  232 (334)
T 2pvf_A          154 MTFKDLVSCTYQLARGMEYLASQK-CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALF  232 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhc
Confidence            467889999999999999999999 999999999999999999999999999865543      2234578899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||.......     ....+........+..++..+.++|.+||..+|.+|||+.
T Consensus       233 ~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  307 (334)
T 2pvf_A          233 DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE-----LFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK  307 (334)
T ss_dssp             HCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-----HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHH-----HHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHH
Confidence            8889999999999999999999 888886643222     1222222223344556778899999999999999999999


Q ss_pred             HHHHHHHhhhhhccC
Q 019475          154 SLVISLMSLQKEAEV  168 (340)
Q Consensus       154 e~l~~l~~~~~~~~~  168 (340)
                      +++++|+.+......
T Consensus       308 ell~~L~~l~~~~~~  322 (334)
T 2pvf_A          308 QLVEDLDRILTLTTN  322 (334)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999998776543

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.97  E-value=3e-31  Score=230.52  Aligned_cols=159  Identities=22%  Similarity=0.364  Sum_probs=126.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++...... ....+++.|+|||++.+..++
T Consensus       114 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  192 (278)
T 1byg_A          114 LGGDCLLKFSLDVCEAMEYLEGNN-FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFS  192 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCHHHhCCCCCC
Confidence            467889999999999999999999 999999999999999999999999998765443 334568899999999988999


Q ss_pred             CccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .++||||||+++|+|++ |..||......     .....+........+...++.+.++|.+||..||.+|||+.++++.
T Consensus       193 ~~~Di~slG~il~~l~t~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  267 (278)
T 1byg_A          193 TKSDVWSFGILLWEIYSFGRVPYPRIPLK-----DVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ  267 (278)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSCTTSCGG-----GHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             chhcHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHH
Confidence            99999999999999998 88887654221     1222222223334556678899999999999999999999999999


Q ss_pred             HHhhhhh
Q 019475          159 LMSLQKE  165 (340)
Q Consensus       159 l~~~~~~  165 (340)
                      |+.+...
T Consensus       268 L~~i~~~  274 (278)
T 1byg_A          268 LEHIKTH  274 (278)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9987654

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.97  E-value=1.9e-31  Score=233.71  Aligned_cols=164  Identities=15%  Similarity=0.203  Sum_probs=127.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....     ....||+.|+|||++.+
T Consensus       108 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  186 (294)
T 4eqm_A          108 LSVDTAINFTNQILDGIKHAHDMR-IVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKG  186 (294)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcC
Confidence            578899999999999999999999 999999999999999999999999999865432     23468999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-CHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-NAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-s~~e  154 (340)
                      ..++.++|||||||++|+|++|+.||.................. ......+...++.+.++|.+||..||.+|| ++++
T Consensus       187 ~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~  265 (294)
T 4eqm_A          187 EATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVP-NVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQE  265 (294)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCC-CHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHH
T ss_pred             CCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCC-CcchhcccCCCHHHHHHHHHHhcCCHhHccccHHH
Confidence            99999999999999999999999998765432221111111110 111122345678899999999999999998 8999


Q ss_pred             HHHHHHhhhhhc
Q 019475          155 LVISLMSLQKEA  166 (340)
Q Consensus       155 ~l~~l~~~~~~~  166 (340)
                      +.+.|..+....
T Consensus       266 l~~~l~~~~~~~  277 (294)
T 4eqm_A          266 MKDDLSSVLHEN  277 (294)
T ss_dssp             HHHHHHTSSSSS
T ss_pred             HHHHHHHHHhhc
Confidence            999888766543

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.97  E-value=4.2e-31  Score=234.24  Aligned_cols=162  Identities=10%  Similarity=0.107  Sum_probs=127.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE----cCCCCeEEecccCcccCCCC---CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF----DKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~----~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~   73 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||+    +.++.+||+|||+++.....   ....||+.|+|||++
T Consensus       109 ~~~~~~~~i~~qi~~~L~~LH~~~-ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  187 (319)
T 4euu_A          109 LPESEFLIVLRDVVGGMNHLRENG-IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMY  187 (319)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccCHHHh
Confidence            578899999999999999999999 9999999999999    77788999999999876544   244689999999998


Q ss_pred             c--------cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-----------------------c
Q 019475           74 R--------TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-----------------------L  122 (340)
Q Consensus        74 ~--------~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~  122 (340)
                      .        +..++.++|||||||++|||++|+.||...............+....                       .
T Consensus       188 ~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
T 4euu_A          188 ERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPV  267 (319)
T ss_dssp             HHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCT
T ss_pred             hhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCc
Confidence            6        46789999999999999999999988854221111111111111110                       0


Q ss_pred             cCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhh
Q 019475          123 EGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQ  163 (340)
Q Consensus       123 ~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~  163 (340)
                      ....+...+..+.+++.+||+.||++|||+.|+++|.....
T Consensus       268 ~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~  308 (319)
T 4euu_A          268 SCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL  308 (319)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred             ccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence            11234567888999999999999999999999999987543

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.97  E-value=4.1e-31  Score=230.71  Aligned_cols=160  Identities=22%  Similarity=0.403  Sum_probs=129.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCC-ceecccCCCCeEEcCCCC-----eEEecccCcccCCCC-CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGR-ALYHDLNAYRILFDKDGN-----PRLSSFGLMKNSRDG-KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~-iih~dlkp~Nil~~~~~~-----~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~   73 (340)
                      +++..++.++.||+.||.|||++++ ++||||||+||+++.++.     +||+|||+++..... ....+|+.|+|||++
T Consensus       119 ~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~  198 (287)
T 4f0f_A          119 IKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETI  198 (287)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccccccccCCCccccCchhh
Confidence            4788999999999999999999863 999999999999988776     999999999865543 345789999999998


Q ss_pred             c--cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 R--TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~--~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .  +..++.++|||||||++|+|++|+.||.........  ..............+..+++.+.++|.+||+.||.+|||
T Consensus       199 ~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps  276 (287)
T 4f0f_A          199 GAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIK--FINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPH  276 (287)
T ss_dssp             SCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHH--HHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             ccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHH--HHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcC
Confidence            4  445788999999999999999999988654322111  112222233344556677889999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 019475          152 AKSLVISLMSL  162 (340)
Q Consensus       152 ~~e~l~~l~~~  162 (340)
                      +.++++.|+.+
T Consensus       277 ~~~ll~~L~~l  287 (287)
T 4f0f_A          277 FSYIVKELSEL  287 (287)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999998753

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.97  E-value=2.7e-31  Score=241.26  Aligned_cols=156  Identities=14%  Similarity=0.270  Sum_probs=125.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----CCCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.+|++||+|||+++...    ...+..||+.|+|||++.+.
T Consensus       150 l~~~~~~~~~~qi~~aL~~LH~~g-ivHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~  228 (396)
T 4dc2_A          150 LPEEHARFYSAEISLALNYLHERG-IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGE  228 (396)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEeccCCHHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCC
Confidence            577889999999999999999999 9999999999999999999999999998532    22456789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh----hh-hhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR----SK-NFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .++.++|||||||++|||++|+.||.........    .. ....+..  ....+|...+.++.+||.+||+.||.+||+
T Consensus       229 ~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~--~~~~~p~~~s~~~~~li~~lL~~dP~~R~~  306 (396)
T 4dc2_A          229 DYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE--KQIRIPRSLSVKAASVLKSFLNKDPKERLG  306 (396)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHH--CCCCCCTTSCHHHHHHHHHHTCSCTTTSTT
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhc--cccCCCCcCCHHHHHHHHHHhcCCHhHcCC
Confidence            9999999999999999999999998543211110    01 1111111  122456667889999999999999999998


Q ss_pred             H------HHHHHHH
Q 019475          152 A------KSLVISL  159 (340)
Q Consensus       152 ~------~e~l~~l  159 (340)
                      +      .++++|.
T Consensus       307 ~~~~~~~~ei~~Hp  320 (396)
T 4dc2_A          307 CHPQTGFADIQGHP  320 (396)
T ss_dssp             CSTTTHHHHHHHST
T ss_pred             CCCCCCHHHHhcCc
Confidence            5      6787764

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.97  E-value=1.8e-31  Score=242.96  Aligned_cols=156  Identities=20%  Similarity=0.300  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||++ ++.+||+|||+++.....      ....||+.|+|||++.
T Consensus       152 ~~~~~~~~i~~qi~~aL~~lH~~~-ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~  229 (390)
T 2zmd_A          152 IDPWERKSYWKNMLEAVHTIHQHG-IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIK  229 (390)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-CCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhh
Confidence            467789999999999999999999 99999999999995 689999999999865432      2456899999999987


Q ss_pred             c-----------CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           75 T-----------GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        75 ~-----------~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      +           ..++.++|||||||++|+|++|..||......   ...+..++.......++...+..+.+||.+||.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  306 (390)
T 2zmd_A          230 DMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ---ISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLK  306 (390)
T ss_dssp             CC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCH---HHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTC
T ss_pred             hccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHH---HHHHHHHhCccccCCCCccchHHHHHHHHHHcc
Confidence            5           36888999999999999999999988653211   112233333333334455556789999999999


Q ss_pred             cCCCCCCCHHHHHHHHHh
Q 019475          144 SEARERPNAKSLVISLMS  161 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~  161 (340)
                      .||.+|||+.++++|.+-
T Consensus       307 ~dP~~Rps~~ell~hp~~  324 (390)
T 2zmd_A          307 RDPKQRISIPELLAHPYV  324 (390)
T ss_dssp             SSTTTSCCHHHHHTSHHH
T ss_pred             cChhhCCCHHHHhhCcCc
Confidence            999999999999998654

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=240.82  Aligned_cols=152  Identities=18%  Similarity=0.289  Sum_probs=124.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.+|++||+|||+++....    ..+..||+.|+|||++.+.
T Consensus       121 ~~~~~~~~~~~qi~~aL~~LH~~g-ivHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  199 (353)
T 3txo_A          121 FDEARARFYAAEIISALMFLHDKG-IIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEM  199 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCC
Confidence            467889999999999999999999 99999999999999999999999999985432    2345789999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA----  152 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~----  152 (340)
                      .++.++|||||||++|||++|..||........    ...+...  ...++...+..+.+||.+||..||.+||++    
T Consensus       200 ~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~----~~~i~~~--~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~  273 (353)
T 3txo_A          200 LYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDL----FEAILND--EVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQG  273 (353)
T ss_dssp             HCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHHC--CCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGT
T ss_pred             CcCCccCCCcchHHHHHHHhCCCCCCCCCHHHH----HHHHHcC--CCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccC
Confidence            899999999999999999999999877543322    1222221  123455677889999999999999999998    


Q ss_pred             --HHHHHHH
Q 019475          153 --KSLVISL  159 (340)
Q Consensus       153 --~e~l~~l  159 (340)
                        .++++|.
T Consensus       274 ~~~~il~hp  282 (353)
T 3txo_A          274 GEHAILRHP  282 (353)
T ss_dssp             CTHHHHTSG
T ss_pred             CHHHHhhCC
Confidence              8888774

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.97  E-value=2.8e-31  Score=229.80  Aligned_cols=158  Identities=18%  Similarity=0.285  Sum_probs=123.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC--CceecccCCCCeEEcC--------CCCeEEecccCcccCCCC--CCcccCCccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG--RALYHDLNAYRILFDK--------DGNPRLSSFGLMKNSRDG--KSYSTNLAFT   68 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~--~iih~dlkp~Nil~~~--------~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~   68 (340)
                      +++.+++.++.||+.||.|||+++  +++||||||+||+++.        ++.+||+|||++......  ....+|+.|+
T Consensus       102 ~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~  181 (271)
T 3dtc_A          102 IPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWM  181 (271)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------------CCGGGS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCCCCcccee
Confidence            477899999999999999999997  3789999999999986        678999999999865443  3456899999


Q ss_pred             CccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCC
Q 019475           69 PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARE  148 (340)
Q Consensus        69 aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~  148 (340)
                      |||.+.+..++.++||||||+++|+|++|+.||........    .............+...++.+.+++.+||..||.+
T Consensus       182 aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  257 (271)
T 3dtc_A          182 APEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV----AYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHS  257 (271)
T ss_dssp             CHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHH----HHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             CHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH----HHhhhcCCCCCCCCcccCHHHHHHHHHHhcCCccc
Confidence            99999998999999999999999999999998876432211    11222223333455667788999999999999999


Q ss_pred             CCCHHHHHHHHHhh
Q 019475          149 RPNAKSLVISLMSL  162 (340)
Q Consensus       149 Rps~~e~l~~l~~~  162 (340)
                      |||+.+++++|+.+
T Consensus       258 Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          258 RPSFTNILDQLTTI  271 (271)
T ss_dssp             SCCHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHhcC
Confidence            99999999999753

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.97  E-value=3.9e-31  Score=229.90  Aligned_cols=160  Identities=21%  Similarity=0.317  Sum_probs=132.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......     ....++..|+|||++.+
T Consensus       106 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  184 (279)
T 1qpc_A          106 LTINKLLDMAAQIAEGMAFIEERN-YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINY  184 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhcc
Confidence            477899999999999999999999 999999999999999999999999999876543     22345778999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |..||.......     ....+........+...+..+.+++.+||..+|++|||+.+
T Consensus       185 ~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  259 (279)
T 1qpc_A          185 GTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE-----VIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDY  259 (279)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-----HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH-----HHHHHhcccCCCCcccccHHHHHHHHHHhccChhhCCCHHH
Confidence            889999999999999999999 888876543221     12222222333445567789999999999999999999999


Q ss_pred             HHHHHHhhhhhc
Q 019475          155 LVISLMSLQKEA  166 (340)
Q Consensus       155 ~l~~l~~~~~~~  166 (340)
                      +++.|+.+....
T Consensus       260 l~~~l~~~~~~~  271 (279)
T 1qpc_A          260 LRSVLEDFFTAT  271 (279)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.97  E-value=2.3e-31  Score=235.86  Aligned_cols=166  Identities=22%  Similarity=0.324  Sum_probs=136.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+||+++.++.+||+|||++.......       ...++..|+|||++
T Consensus       131 ~~~~~~~~i~~~l~~~l~~LH~~~-ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~  209 (318)
T 3lxp_A          131 IGLAQLLLFAQQICEGMAYLHAQH-YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECL  209 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHh
Confidence            578899999999999999999999 9999999999999999999999999998765432       23467789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHH----------hhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDL----------IRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      .+..++.++|||||||++|+|++|..||.......          .........+........+..++..+.+||.+||.
T Consensus       210 ~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  289 (318)
T 3lxp_A          210 KEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWE  289 (318)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTC
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHHHHHHHHcC
Confidence            98889999999999999999999998875532211          11122333334444445566778899999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhhcc
Q 019475          144 SEARERPNAKSLVISLMSLQKEAE  167 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~~~~~  167 (340)
                      .||.+|||+.++++.|+.+.....
T Consensus       290 ~dP~~Rps~~ell~~L~~l~~~~~  313 (318)
T 3lxp_A          290 TEASFRPTFENLIPILKTVHEKYQ  313 (318)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             CCcccCcCHHHHHHHHHHHHHhhc
Confidence            999999999999999999877653

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.97  E-value=6e-31  Score=242.76  Aligned_cols=155  Identities=16%  Similarity=0.165  Sum_probs=126.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc---CCCCeEEecccCcccCCCC----CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD---KDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~---~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~   73 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++   .++.+||+|||++......    ....||+.|+|||++
T Consensus       107 ~~e~~~~~i~~qil~aL~~lH~~g-ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l  185 (444)
T 3soa_A          107 YSEADASHCIQQILEAVLHCHQMG-VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVL  185 (444)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHh
Confidence            467889999999999999999999 99999999999998   5678999999999866543    235789999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+..++.++|||||||++|+|++|..||.........    ..+.....  ........++++.+||.+||+.||.+|||
T Consensus       186 ~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt  261 (444)
T 3soa_A          186 RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLY----QQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRIT  261 (444)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH----HHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             cCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHH----HHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCC
Confidence            9989999999999999999999999998765332221    11111111  11222356788999999999999999999


Q ss_pred             HHHHHHHHH
Q 019475          152 AKSLVISLM  160 (340)
Q Consensus       152 ~~e~l~~l~  160 (340)
                      +.++++|.+
T Consensus       262 a~e~L~hp~  270 (444)
T 3soa_A          262 AAEALKHPW  270 (444)
T ss_dssp             HHHHHHSCT
T ss_pred             HHHHhcCcc
Confidence            999999843

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.97  E-value=3.4e-31  Score=234.02  Aligned_cols=156  Identities=17%  Similarity=0.259  Sum_probs=121.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+ 
T Consensus       116 ~~~~~~~~~~~qi~~~l~~LH~~~-ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~  194 (311)
T 3niz_A          116 LQDSQIKIYLYQLLRGVAHCHQHR-ILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGS  194 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCC
Confidence            467889999999999999999999 999999999999999999999999999865432    33467999999999876 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc------------------cc--C-----CCCchh
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA------------------LE--G-----HFSNDE  130 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------~~--~-----~~~~~~  130 (340)
                      ..++.++|||||||++|+|++|+.||........... +.......                  ..  .     ...+..
T Consensus       195 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (311)
T 3niz_A          195 KKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPK-IFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGF  273 (311)
T ss_dssp             CSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHH-HHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTC
T ss_pred             CCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHH-HHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCccc
Confidence            4589999999999999999999999876432211110 00000000                  00  0     011234


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          131 GTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       131 ~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ++++.+||.+||..||++|||+.++++|
T Consensus       274 ~~~~~~li~~~L~~dP~~Rpt~~ell~h  301 (311)
T 3niz_A          274 CQEGIDLLSNMLCFDPNKRISARDAMNH  301 (311)
T ss_dssp             CHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             CHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            5789999999999999999999999987

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.97  E-value=6e-32  Score=236.20  Aligned_cols=161  Identities=22%  Similarity=0.334  Sum_probs=126.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC--------eEEecccCcccCCCCCCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN--------PRLSSFGLMKNSRDGKSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~--------~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~   72 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.        +||+|||++..........+|+.|+|||+
T Consensus       110 ~~~~~~~~i~~qi~~~L~~LH~~~-ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~  188 (289)
T 4fvq_A          110 INILWKLEVAKQLAAAMHFLEENT-LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPEC  188 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHHHHHHTTTTSCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-eECCCcCcceEEEecCCcccccccceeeeccCcccccccCccccCCcCcccCHHH
Confidence            467889999999999999999999 999999999999998887        99999999877665555678899999999


Q ss_pred             ccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           73 MRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        73 ~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      +.+ ..++.++|||||||++|+|++|..|+........    .......  ....+...+.++.+|+.+||+.||.+|||
T Consensus       189 ~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps  262 (289)
T 4fvq_A          189 IENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR----KLQFYED--RHQLPAPKAAELANLINNCMDYEPDHRPS  262 (289)
T ss_dssp             HHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH----HHHHHHT--TCCCCCCSSCTTHHHHHHHSCSSGGGSCC
T ss_pred             hCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH----HHHHhhc--cCCCCCCCCHHHHHHHHHHcCCChhHCcC
Confidence            987 6789999999999999999997655543321111    1111111  12233444567999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccC
Q 019475          152 AKSLVISLMSLQKEAEV  168 (340)
Q Consensus       152 ~~e~l~~l~~~~~~~~~  168 (340)
                      +.+++++|+.+......
T Consensus       263 ~~~ll~~l~~l~~p~~~  279 (289)
T 4fvq_A          263 FRAIIRDLNSLFTPDLV  279 (289)
T ss_dssp             HHHHHHHHHTCC-----
T ss_pred             HHHHHHHHHHhcCCCCC
Confidence            99999999988775443

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.4e-31  Score=240.51  Aligned_cols=161  Identities=19%  Similarity=0.261  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~   72 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....        ....+++.|+|||+
T Consensus       189 ~~~~~~~~i~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~  267 (373)
T 3c1x_A          189 PTVKDLIGFGLQVAKGMKFLASKK-FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALES  267 (373)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHH
Confidence            367889999999999999999999 999999999999999999999999999754322        12345778999999


Q ss_pred             cccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           73 MRTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        73 ~~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      +.+..++.++|||||||++|||++ |.+||.....     ......+........+..++..+.++|.+||..||++|||
T Consensus       268 ~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs  342 (373)
T 3c1x_A          268 LQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-----FDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPS  342 (373)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS-----SCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH-----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcC
Confidence            999999999999999999999999 5555544311     1111111122222345566788999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcc
Q 019475          152 AKSLVISLMSLQKEAE  167 (340)
Q Consensus       152 ~~e~l~~l~~~~~~~~  167 (340)
                      +.+++++|+.+.....
T Consensus       343 ~~ell~~L~~i~~~~~  358 (373)
T 3c1x_A          343 FSELVSRISAIFSTFI  358 (373)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999877653

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.97  E-value=4.1e-31  Score=235.08  Aligned_cols=160  Identities=20%  Similarity=0.264  Sum_probs=130.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC---CCCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD---GKSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~---~~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++....   .....+++.|+|||++.+..
T Consensus       139 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  217 (327)
T 1fvr_A          139 LSSQQLLHFAADVARGMDYLSQKQ-FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV  217 (327)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCCCCccceEEEcCCCeEEEcccCcCccccccccccCCCCCccccChhhhcccc
Confidence            467889999999999999999999 99999999999999999999999999875432   22335678899999999888


Q ss_pred             CCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      ++.++|||||||++|+|++ |..||.......     ....+........+...+..+.+||.+||..+|.+|||+.+++
T Consensus       218 ~~~~~Di~slG~il~ellt~g~~pf~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell  292 (327)
T 1fvr_A          218 YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE-----LYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL  292 (327)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-----HHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCchhcchHHHHHHHHHHcCCCCCCCCCcHHH-----HHHHhhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence            9999999999999999998 998886643222     1222222233344556778999999999999999999999999


Q ss_pred             HHHHhhhhhc
Q 019475          157 ISLMSLQKEA  166 (340)
Q Consensus       157 ~~l~~~~~~~  166 (340)
                      ++|..+....
T Consensus       293 ~~L~~~~~~~  302 (327)
T 1fvr_A          293 VSLNRMLEER  302 (327)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHHhh
Confidence            9999987764

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.3e-31  Score=234.98  Aligned_cols=160  Identities=20%  Similarity=0.279  Sum_probs=127.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++......       ...+++.|+|||++
T Consensus       144 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  222 (333)
T 1mqb_A          144 FSVLQLVGMLRGIAAGMKYLANMN-YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAI  222 (333)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhc
Confidence            478899999999999999999999 9999999999999999999999999998654321       12346789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|+|++ |..||......     .....+........+..++..+.+++.+||..+|.+||++
T Consensus       223 ~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  297 (333)
T 1mqb_A          223 SYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH-----EVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKF  297 (333)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCH
T ss_pred             ccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH-----HHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCH
Confidence            98899999999999999999999 99888654322     1222222222333455677889999999999999999999


Q ss_pred             HHHHHHHHhhhhhc
Q 019475          153 KSLVISLMSLQKEA  166 (340)
Q Consensus       153 ~e~l~~l~~~~~~~  166 (340)
                      .+++++|+.+....
T Consensus       298 ~~l~~~L~~~~~~~  311 (333)
T 1mqb_A          298 ADIVSILDKLIRAP  311 (333)
T ss_dssp             HHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.97  E-value=4e-31  Score=234.59  Aligned_cols=155  Identities=23%  Similarity=0.289  Sum_probs=126.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......    ....||+.|+|||++.+.
T Consensus       138 l~~~~~~~i~~qi~~~L~~LH~~~-ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  216 (321)
T 2c30_A          138 LNEEQIATVCEAVLQALAYLHAQG-VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRS  216 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCC
Confidence            578899999999999999999999 999999999999999999999999998765432    345789999999999998


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc-cCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL-EGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|||||||++|+|++|+.||........    ...+..... ....+...++.+.++|.+||..||++|||+.++
T Consensus       217 ~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el  292 (321)
T 2c30_A          217 LYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQA----MKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQEL  292 (321)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH----HHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence            999999999999999999999998865432211    111111111 111223456789999999999999999999999


Q ss_pred             HHHHH
Q 019475          156 VISLM  160 (340)
Q Consensus       156 l~~l~  160 (340)
                      ++|..
T Consensus       293 l~hp~  297 (321)
T 2c30_A          293 LDHPF  297 (321)
T ss_dssp             HTSGG
T ss_pred             hcChh
Confidence            98743

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.97  E-value=2.1e-31  Score=240.03  Aligned_cols=160  Identities=18%  Similarity=0.117  Sum_probs=117.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC--eEEecccCcccCCC---CCCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN--PRLSSFGLMKNSRD---GKSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~---~~~~~~~~~y~aPE~~~~   75 (340)
                      +++.++..|+.||+.||.|||++| |+||||||+|||++.++.  +||+|||+++....   .....||+.|+|||++.+
T Consensus       113 ~~~~~~~~i~~ql~~~L~~LH~~~-ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~  191 (361)
T 3uc3_A          113 FSEDEARFFFQQLLSGVSYCHSMQ-ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLR  191 (361)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSCHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCChhhhcC
Confidence            577899999999999999999999 999999999999987765  99999999874332   244578999999999988


Q ss_pred             CCCCCc-cchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPE-SVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~-~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.+ +|||||||++|+|++|+.||...............+.......+.....++.+.+||.+||..||.+|||+.+
T Consensus       192 ~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  271 (361)
T 3uc3_A          192 QEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPE  271 (361)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred             CCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            877655 8999999999999999998865422111111222222222222222346788999999999999999999999


Q ss_pred             HHHHHHh
Q 019475          155 LVISLMS  161 (340)
Q Consensus       155 ~l~~l~~  161 (340)
                      +++|.+-
T Consensus       272 ll~hp~f  278 (361)
T 3uc3_A          272 IKTHSWF  278 (361)
T ss_dssp             HHTSHHH
T ss_pred             HHhCcch
Confidence            9998654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.97  E-value=2.9e-31  Score=246.16  Aligned_cols=160  Identities=23%  Similarity=0.315  Sum_probs=129.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....     ....+++.|+|||++.+
T Consensus       277 ~~~~~~~~i~~qi~~~l~~LH~~~-ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~  355 (452)
T 1fmk_A          277 LRLPQLVDMAAQIASGMAYVERMN-YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY  355 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhc
Confidence            467899999999999999999999 999999999999999999999999999865432     12345678999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||++ |..||......     .....+........+..+++.+.+||.+||..||++|||+.+
T Consensus       356 ~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~  430 (452)
T 1fmk_A          356 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-----EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEY  430 (452)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-----HHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence            999999999999999999999 88888664322     122222333344456677889999999999999999999999


Q ss_pred             HHHHHHhhhhhc
Q 019475          155 LVISLMSLQKEA  166 (340)
Q Consensus       155 ~l~~l~~~~~~~  166 (340)
                      +++.|+.+....
T Consensus       431 l~~~L~~~~~~~  442 (452)
T 1fmk_A          431 LQAFLEDYFTST  442 (452)
T ss_dssp             HHHHHHTTTSCS
T ss_pred             HHHHHHHHhccC
Confidence            999998876543

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.97  E-value=3.2e-31  Score=231.57  Aligned_cols=158  Identities=18%  Similarity=0.310  Sum_probs=120.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++.....    ....+|+.|+|||++.+.
T Consensus        97 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  175 (288)
T 1ob3_A           97 LESVTAKSFLLQLLNGIAYCHDRR-VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGS  175 (288)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCC
Confidence            467789999999999999999999 999999999999999999999999998765422    334679999999999764


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh----------------hcccc-------CCCCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM----------------DSALE-------GHFSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~----------------~~~~~-------~~~~~~~~~  132 (340)
                       .++.++|||||||++|+|++|..||.................                +....       .......++
T Consensus       176 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (288)
T 1ob3_A          176 KKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDE  255 (288)
T ss_dssp             CSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCH
Confidence             589999999999999999999998876432211111100000                00000       011234578


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ++.+||.+||..||++|||+.++++|.
T Consensus       256 ~~~~li~~~L~~dP~~Rpt~~e~l~hp  282 (288)
T 1ob3_A          256 SGIDLLSKMLKLDPNQRITAKQALEHA  282 (288)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHTSG
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHhcCc
Confidence            899999999999999999999999863

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.97  E-value=4.8e-31  Score=236.63  Aligned_cols=152  Identities=19%  Similarity=0.326  Sum_probs=126.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++....    .....||+.|+|||++.+.
T Consensus       118 ~~~~~~~~~~~qi~~aL~~LH~~g-ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  196 (353)
T 2i0e_A          118 FKEPHAVFYAAEIAIGLFFLQSKG-IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQ  196 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCC
Confidence            467889999999999999999999 99999999999999999999999999986332    2355789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----  151 (340)
                      .++.++|||||||++|||++|+.||.......+    ...+...  ...++...+.++.+||.+||..||.+||+     
T Consensus       197 ~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~----~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~  270 (353)
T 2i0e_A          197 PYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDEL----FQSIMEH--NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEG  270 (353)
T ss_dssp             CBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHHC--CCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTH
T ss_pred             CcCCcccccchHHHHHHHHcCCCCCCCCCHHHH----HHHHHhC--CCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCC
Confidence            999999999999999999999999876533222    1222222  12345667889999999999999999995     


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|.
T Consensus       271 ~~~i~~h~  278 (353)
T 2i0e_A          271 ERDIKEHA  278 (353)
T ss_dssp             HHHHHTSG
T ss_pred             HHHHhcCc
Confidence            68888763

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.97  E-value=6.2e-31  Score=232.82  Aligned_cols=152  Identities=21%  Similarity=0.282  Sum_probs=127.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++..+..++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++..... .+..||+.|+|||++.+..++
T Consensus       103 ~~~~~~~~~~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~  181 (318)
T 1fot_A          103 FPNPVAKFYAAEVCLALEYLHSKD-IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYN  181 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCChheEEEcCCCCEEEeecCcceecCCccccccCCccccCHhHhcCCCCC
Confidence            467788999999999999999999 999999999999999999999999999876543 456789999999999999999


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NAKS  154 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~~e  154 (340)
                      .++|||||||++|||++|..||........    ...+....  ..++...+.++.++|.+||..||.+||     ++++
T Consensus       182 ~~~DiwslG~il~ell~g~~pf~~~~~~~~----~~~i~~~~--~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~  255 (318)
T 1fot_A          182 KSIDWWSFGILIYEMLAGYTPFYDSNTMKT----YEKILNAE--LRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTED  255 (318)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCTTCCSSHHHH----HHHHHHCC--CCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHH
T ss_pred             cccchhhhHHHHHHHHhCCCCCCCCCHHHH----HHHHHhCC--CCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHH
Confidence            999999999999999999999876432211    12222221  234556778899999999999999999     8999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      +++|.
T Consensus       256 i~~hp  260 (318)
T 1fot_A          256 VKNHP  260 (318)
T ss_dssp             HHTSG
T ss_pred             HhcCc
Confidence            98874

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.8e-31  Score=236.83  Aligned_cols=159  Identities=16%  Similarity=0.187  Sum_probs=114.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEcCCCCeEEecccCcccCCCCC----------------Cccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----------------SYST   63 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----------------~~~~   63 (340)
                      +++.+++.|+.||+.||.|||+++ +|+||||||+|||++.++.+||+|||+++......                ...+
T Consensus       133 ~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T 3ll6_A          133 LSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNT  212 (337)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC--------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccC
Confidence            578899999999999999999985 49999999999999999999999999998654321                3347


Q ss_pred             CCccCCcccc---ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHH
Q 019475           64 NLAFTPPEYM---RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASR  140 (340)
Q Consensus        64 ~~~y~aPE~~---~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  140 (340)
                      |+.|+|||++   .+..++.++|||||||++|+|++|..||......        ...........+...+..+.+||.+
T Consensus       213 t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~li~~  284 (337)
T 3ll6_A          213 TPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL--------RIVNGKYSIPPHDTQYTVFHSLIRA  284 (337)
T ss_dssp             -----------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC--------------------CCCCTTCCSSGGGHHHHHH
T ss_pred             CCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH--------HhhcCcccCCcccccchHHHHHHHH
Confidence            8999999998   5667889999999999999999999988653211        1122222222233445668999999


Q ss_pred             hcccCCCCCCCHHHHHHHHHhhhhhcc
Q 019475          141 CLQSEARERPNAKSLVISLMSLQKEAE  167 (340)
Q Consensus       141 cl~~~p~~Rps~~e~l~~l~~~~~~~~  167 (340)
                      ||+.||.+|||+.+++++|+.+.....
T Consensus       285 ~l~~~p~~Rps~~e~l~~l~~~~~~~~  311 (337)
T 3ll6_A          285 MLQVNPEERLSIAEVVHQLQEIAAARN  311 (337)
T ss_dssp             HSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred             HccCChhhCcCHHHHHHHHHHHHhccC
Confidence            999999999999999999999877643

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.97  E-value=2.3e-31  Score=239.40  Aligned_cols=154  Identities=18%  Similarity=0.198  Sum_probs=125.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC----CeEEecccCcccCCCC---CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG----NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~   73 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++    .+||+|||++......   ....||+.|+|||++
T Consensus       112 l~~~~~~~i~~qi~~aL~~LH~~g-ivHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~  190 (361)
T 2yab_A          112 LSEEEATSFIKQILDGVNYLHTKK-IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIV  190 (361)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEECchHH
Confidence            467889999999999999999999 99999999999998877    7999999999876543   345789999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+..++.++|||||||++|+|++|..||.+.......    ..+.....  ........++.+.+||.+||..||.+|||
T Consensus       191 ~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t  266 (361)
T 2yab_A          191 NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETL----ANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLT  266 (361)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHH----HHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             cCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHH----HHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcC
Confidence            9889999999999999999999999998765322211    11111111  11111345678999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|.
T Consensus       267 ~~e~l~hp  274 (361)
T 2yab_A          267 IQEALRHP  274 (361)
T ss_dssp             HHHHHTST
T ss_pred             HHHHhcCc
Confidence            99999874

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=1.6e-31  Score=246.15  Aligned_cols=159  Identities=16%  Similarity=0.211  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC--eEEecccCcccCCCC-CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN--PRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..|+.||+.||.|||+++ |+||||||+|||++.++.  +||+|||++...... .+..+|+.|+|||++.+..
T Consensus       197 ~~~~~~~~i~~qi~~aL~~LH~~~-ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~  275 (429)
T 3kvw_A          197 FSLPLVRKFAHSILQCLDALHKNR-IIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGAR  275 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHT-EECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHeEEccCCCcceEEeecccceecCCcccccCCCCCccChHHHhCCC
Confidence            578899999999999999999999 999999999999999987  999999999765543 4567899999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh-----------------Hhhhcc-c-----------------
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL-----------------LLMDSA-L-----------------  122 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~-~-----------------  122 (340)
                      ++.++|||||||++|||++|.+||........-.....                 ..+... .                 
T Consensus       276 ~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (429)
T 3kvw_A          276 YGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLN  355 (429)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEEC
T ss_pred             CCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCccccccccccccccccc
Confidence            99999999999999999999998876532211100000                 000000 0                 


Q ss_pred             ---------c-C--------CCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          123 ---------E-G--------HFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       123 ---------~-~--------~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                               . .        ..+...++.+.+||.+||+.||++|||+.|+++|.+
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw  411 (429)
T 3kvw_A          356 GGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPW  411 (429)
T ss_dssp             CEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTT
T ss_pred             ccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhCChh
Confidence                     0 0        001122567899999999999999999999998743

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.97  E-value=4.4e-32  Score=246.09  Aligned_cols=146  Identities=15%  Similarity=0.116  Sum_probs=118.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccC----
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTG----   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~----   76 (340)
                      ++..++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++..... ....| +.|+|||++.+.    
T Consensus       204 ~~~~~~~i~~qi~~aL~~LH~~~-ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~  281 (377)
T 3byv_A          204 VHHARLQLTLQVIRLLASLHHYG-LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARRATIS  281 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECTTCCEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHHTSTH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCCEEEEechhheecCCcccCCCC-cCccChhhhccccccc
Confidence            46788899999999999999999 999999999999999999999999999865543 33456 999999999887    


Q ss_pred             -------CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           77 -------RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        77 -------~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                             .++.++|||||||++|||++|+.||.......    ....+    ..  .....++++.+||.+||..||++|
T Consensus       282 ~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~----~~~~~----~~--~~~~~~~~~~~li~~~L~~dp~~R  351 (377)
T 3byv_A          282 YHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALG----GSEWI----FR--SCKNIPQPVRALLEGFLRYPKEDR  351 (377)
T ss_dssp             HHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------C----CSGGG----GS--SCCCCCHHHHHHHHHHTCSSGGGC
T ss_pred             ccccccccCChhhhHHHHHHHHHHHHHCCCCCccccccc----chhhh----hh--hccCCCHHHHHHHHHHcCCCchhC
Confidence                   79999999999999999999999886532111    11111    11  123456789999999999999999


Q ss_pred             CCHHHHHHHH
Q 019475          150 PNAKSLVISL  159 (340)
Q Consensus       150 ps~~e~l~~l  159 (340)
                      ||+.++++|.
T Consensus       352 pt~~e~l~hp  361 (377)
T 3byv_A          352 LLPLQAMETP  361 (377)
T ss_dssp             CCHHHHHTSH
T ss_pred             CCHHHHhhCh
Confidence            9999999863

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.97  E-value=6.4e-31  Score=230.73  Aligned_cols=160  Identities=19%  Similarity=0.257  Sum_probs=127.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~   72 (340)
                      +++.+++.|+.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....        ....+|+.|+|||.
T Consensus       125 ~~~~~~~~i~~ql~~~l~~lH~~~-i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~  203 (298)
T 3f66_A          125 PTVKDLIGFGLQVAKGMKYLASKK-FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALES  203 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHH
Confidence            467889999999999999999999 999999999999999999999999999755432        23356788999999


Q ss_pred             cccCCCCCccchhhHHHHHHHHHhCCCC-CCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           73 MRTGRVTPESVVYSFGTMLLDLLSGKHI-PPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        73 ~~~~~~~~~~Di~slG~~~~el~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      +.+..++.++||||||+++|+|++|..| |.....     ...............+...+..+.+++.+||..+|.+|||
T Consensus       204 ~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps  278 (298)
T 3f66_A          204 LQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-----FDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPS  278 (298)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCT-----TTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             hcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCH-----HHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCcC
Confidence            9999999999999999999999995544 433211     1111112222223334556788999999999999999999


Q ss_pred             HHHHHHHHHhhhhhc
Q 019475          152 AKSLVISLMSLQKEA  166 (340)
Q Consensus       152 ~~e~l~~l~~~~~~~  166 (340)
                      +.++++.|..+....
T Consensus       279 ~~ell~~L~~~~~~~  293 (298)
T 3f66_A          279 FSELVSRISAIFSTF  293 (298)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999887654

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.97  E-value=2.3e-31  Score=235.36  Aligned_cols=160  Identities=22%  Similarity=0.332  Sum_probs=130.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCcccccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~~   75 (340)
                      ++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++......      ...+|+.|+|||++.+
T Consensus       146 ~~~~~~~~~~qi~~al~~lH~~~-i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  224 (316)
T 2xir_A          146 TLEHLICYSFQVAKGMEFLASRK-CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD  224 (316)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-cccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhcc
Confidence            56789999999999999999999 9999999999999999999999999998654332      2346788999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|+|++ |..||.......    .....+........+...++.+.+++.+||..||.+|||+.+
T Consensus       225 ~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e  300 (316)
T 2xir_A          225 RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE----EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSE  300 (316)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSH----HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhCCCCCCcccchhH----HHHHHhccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            999999999999999999998 888876542211    112222222223345556788999999999999999999999


Q ss_pred             HHHHHHhhhhhc
Q 019475          155 LVISLMSLQKEA  166 (340)
Q Consensus       155 ~l~~l~~~~~~~  166 (340)
                      ++++|..+....
T Consensus       301 ll~~L~~~~~~~  312 (316)
T 2xir_A          301 LVEHLGNLLQAN  312 (316)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh
Confidence            999999887653

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.97  E-value=4.6e-31  Score=236.68  Aligned_cols=152  Identities=16%  Similarity=0.212  Sum_probs=128.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++..... .+..||+.|+|||++.+..++
T Consensus       138 ~~~~~~~~~~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~  216 (350)
T 1rdq_E          138 FSEPHARFYAAQIVLTFEYLHSLD-LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYN  216 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccccCccceEEECCCCCEEEcccccceeccCCcccccCCccccCHHHhcCCCCC
Confidence            467889999999999999999999 999999999999999999999999999876543 456789999999999999999


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----HHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----AKS  154 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~~e  154 (340)
                      .++|||||||++|+|++|..||........    ...+...  ...++...+.++.+||.+||..||.+||+     +.+
T Consensus       217 ~~~DiwslG~il~ell~g~~Pf~~~~~~~~----~~~i~~~--~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~e  290 (350)
T 1rdq_E          217 KAVDWWALGVLIYEMAAGYPPFFADQPIQI----YEKIVSG--KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVND  290 (350)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHHC--CCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHH
T ss_pred             CcCCEecccHhHhHHhhCCCCCCCCCHHHH----HHHHHcC--CCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHH
Confidence            999999999999999999999876532221    1122221  12345567789999999999999999998     899


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      +++|.
T Consensus       291 i~~h~  295 (350)
T 1rdq_E          291 IKNHK  295 (350)
T ss_dssp             HHTSG
T ss_pred             HHhCc
Confidence            98874

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.97  E-value=4.5e-31  Score=230.98  Aligned_cols=160  Identities=17%  Similarity=0.247  Sum_probs=132.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++.......       ...+++.|+|||++
T Consensus       114 ~~~~~~~~i~~qi~~~l~~LH~~~-i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  192 (291)
T 1xbb_A          114 VKDKNIIELVHQVSMGMKYLEESN-FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI  192 (291)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHh
Confidence            467889999999999999999999 9999999999999999999999999998765432       12346789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++||||||+++|+|++ |..||.......     ....+........+..++..+.++|.+||..||.+|||+
T Consensus       193 ~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  267 (291)
T 1xbb_A          193 NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-----VTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGF  267 (291)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-----HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             ccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH-----HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            98889999999999999999999 998886643221     222222233334556678899999999999999999999


Q ss_pred             HHHHHHHHhhhhhc
Q 019475          153 KSLVISLMSLQKEA  166 (340)
Q Consensus       153 ~e~l~~l~~~~~~~  166 (340)
                      .++++.|+.+....
T Consensus       268 ~~l~~~L~~~~~~~  281 (291)
T 1xbb_A          268 AAVELRLRNYYYDV  281 (291)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.97  E-value=4.5e-31  Score=233.82  Aligned_cols=158  Identities=20%  Similarity=0.284  Sum_probs=122.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+.
T Consensus       105 ~~~~~~~~~~~qi~~aL~~lH~~~-ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  183 (317)
T 2pmi_A          105 LELNLVKYFQWQLLQGLAFCHENK-ILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGS  183 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHhhCC
Confidence            467788999999999999999999 999999999999999999999999999865432    345689999999999764


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh----------------cc------------ccCCCC
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD----------------SA------------LEGHFS  127 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~------------~~~~~~  127 (340)
                       .++.++|||||||++|+|++|+.||..................                ..            .....+
T Consensus       184 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (317)
T 2pmi_A          184 RTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTK  263 (317)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhccccc
Confidence             5899999999999999999999998765332211111000000                00            000112


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ...+.++.+||.+||..||++|||+.++++|.
T Consensus       264 ~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp  295 (317)
T 2pmi_A          264 EPLDGNLMDFLHGLLQLNPDMRLSAKQALHHP  295 (317)
T ss_dssp             SCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSG
T ss_pred             ccCCHHHHHHHHHHCCCCcccCCCHHHHhCCh
Confidence            23567899999999999999999999999874

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.97  E-value=1.9e-31  Score=237.84  Aligned_cols=160  Identities=19%  Similarity=0.295  Sum_probs=130.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||++......      ....+|+.|+|||++.
T Consensus       161 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  239 (333)
T 2i1m_A          161 ASTRDLLHFSSQVAQGMAFLASKN-CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIF  239 (333)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCC-cccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhc
Confidence            467889999999999999999999 999999999999999999999999999754332      2234577899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||......    ...............+...+..+.+|+.+||+.||.+|||+.
T Consensus       240 ~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~  315 (333)
T 2i1m_A          240 DCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN----SKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQ  315 (333)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS----HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh----HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCHH
Confidence            8899999999999999999998 88777653211    112223333333334555678899999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      +++++|+.+...
T Consensus       316 ~l~~~L~~~~~~  327 (333)
T 2i1m_A          316 QICSFLQEQAQE  327 (333)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=4.9e-31  Score=227.68  Aligned_cols=159  Identities=18%  Similarity=0.294  Sum_probs=130.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......     ....++..|+|||++.+
T Consensus       101 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  179 (267)
T 3t9t_A          101 FAAETLLGMCLDVCEGMAYLEEAC-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF  179 (267)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcC
Confidence            467889999999999999999999 999999999999999999999999998865432     23456778999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |..||........     ...+........+...+..+.+++.+||..+|++|||+.+
T Consensus       180 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  254 (267)
T 3t9t_A          180 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEV-----VEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSR  254 (267)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH-----HHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCccchhchhhhHHHHHHHhccCCCCCCCCCHHHH-----HHHHhcCCcCCCCccCcHHHHHHHHHHccCChhhCcCHHH
Confidence            899999999999999999999 7877765432211     1112222223344556788999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      ++++|..+...
T Consensus       255 ll~~L~~l~~~  265 (267)
T 3t9t_A          255 LLRQLAEIAES  265 (267)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999987653

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.97  E-value=3.3e-31  Score=235.64  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC----CeEEecccCcccCCCC---CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG----NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||++.++    .+||+|||+++.....   ....||+.|+|||++
T Consensus       111 ~~~~~~~~i~~qi~~al~~lH~~~-ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  189 (326)
T 2y0a_A          111 LTEEEATEFLKQILNGVYYLHSLQ-IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIV  189 (326)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcCCceee
Confidence            467899999999999999999999 99999999999999887    8999999999876433   345789999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .+..++.++|||||||++|+|++|..||........... +.. .............+..+.+||.+||..||.+|||+.
T Consensus       190 ~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  267 (326)
T 2y0a_A          190 NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLAN-VSA-VNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQ  267 (326)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHH-HHH-TCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHH-HHh-cCCCcCccccccCCHHHHHHHHHHccCChhhCCCHH
Confidence            988999999999999999999999999876432211111 000 000011111124467899999999999999999999


Q ss_pred             HHHHHH
Q 019475          154 SLVISL  159 (340)
Q Consensus       154 e~l~~l  159 (340)
                      ++++|.
T Consensus       268 e~l~hp  273 (326)
T 2y0a_A          268 DSLQHP  273 (326)
T ss_dssp             HHHHST
T ss_pred             HHhcCC
Confidence            999873

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.6e-31  Score=237.07  Aligned_cols=156  Identities=17%  Similarity=0.213  Sum_probs=126.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC--CCCeEEecccCcccCCCCC---CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK--DGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||++| |+||||||+|||++.  ++.+||+|||+++......   ...+|+.|+|||++.+
T Consensus        99 ~~~~~~~~i~~qi~~al~~lH~~g-ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~  177 (321)
T 1tki_A           99 LNEREIVSYVHQVCEALQFLHSHN-IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQH  177 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcC
Confidence            477899999999999999999999 999999999999997  7899999999998765543   3468999999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC--CCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH--FSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..++.++|||||||++|+|++|..||........    ...+........  .....+.++.+||.+||..||.+|||+.
T Consensus       178 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~  253 (321)
T 1tki_A          178 DVVSTATDMWSLGTLVYVLLSGINPFLAETNQQI----IENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTAS  253 (321)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH----HHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHH----HHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            8889999999999999999999999876533221    111111111100  1124567899999999999999999999


Q ss_pred             HHHHHHHh
Q 019475          154 SLVISLMS  161 (340)
Q Consensus       154 e~l~~l~~  161 (340)
                      ++++|.+-
T Consensus       254 e~l~hp~~  261 (321)
T 1tki_A          254 EALQHPWL  261 (321)
T ss_dssp             HHHHSHHH
T ss_pred             HHhcChhh
Confidence            99998654

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.97  E-value=2.3e-31  Score=237.99  Aligned_cols=151  Identities=19%  Similarity=0.287  Sum_probs=125.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++....    .....||+.|+|||++.+.
T Consensus       115 ~~~~~~~~~~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  193 (345)
T 1xjd_A          115 FDLSRATFYAAEIILGLQFLHSKG-IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQ  193 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCC
Confidence            467889999999999999999999 99999999999999999999999999986432    2455789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH-HH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK-SL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~-e~  155 (340)
                      .++.++|||||||++|||++|..||.........    ..+...  ...++...+.++.+||.+||..||.+||++. ++
T Consensus       194 ~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~----~~i~~~--~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i  267 (345)
T 1xjd_A          194 KYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELF----HSIRMD--NPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDI  267 (345)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHC--CCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCG
T ss_pred             CCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHH----HHHHhC--CCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHH
Confidence            9999999999999999999999998765332211    111111  1234556778899999999999999999997 77


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      ++|
T Consensus       268 ~~h  270 (345)
T 1xjd_A          268 RQH  270 (345)
T ss_dssp             GGS
T ss_pred             HcC
Confidence            665

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.97  E-value=3.5e-31  Score=248.19  Aligned_cols=159  Identities=19%  Similarity=0.304  Sum_probs=132.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++..++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......     ...+++.|+|||++.+
T Consensus       315 ~~~~~~~~i~~qi~~~L~~LH~~~-ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~  393 (495)
T 1opk_A          315 VSAVVLLYMATQISSAMEYLEKKN-FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY  393 (495)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhc
Confidence            467889999999999999999999 9999999999999999999999999998654321     2234678999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||++ |..||.....     ......+........+..+++.+.+||.+||+.||.+|||+.+
T Consensus       394 ~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e  468 (495)
T 1opk_A          394 NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-----SQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAE  468 (495)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG-----GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHH
Confidence            899999999999999999999 8888765422     2233334444444556677889999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      +++.|+.+...
T Consensus       469 l~~~L~~~~~~  479 (495)
T 1opk_A          469 IHQAFETMFQE  479 (495)
T ss_dssp             HHHHHHTSCSS
T ss_pred             HHHHHHHHHhc
Confidence            99999876543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.97  E-value=4.6e-31  Score=230.47  Aligned_cols=160  Identities=19%  Similarity=0.309  Sum_probs=133.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++..++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++.......     ...+++.|+|||++.+
T Consensus       108 ~~~~~~~~i~~~i~~~l~~lH~~~-i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  186 (288)
T 3kfa_A          108 VSAVVLLYMATQISSAMEYLEKKN-FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY  186 (288)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHT-CCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHH
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHCC-ccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhcc
Confidence            467889999999999999999999 9999999999999999999999999998665432     2245778999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++||||||+++|+|++ |..||.....     ......+........+...++.+.+|+.+||..||.+|||+.+
T Consensus       187 ~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~  261 (288)
T 3kfa_A          187 NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-----SQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAE  261 (288)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG-----GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHH
Confidence            999999999999999999999 8877765422     2223333333344456677889999999999999999999999


Q ss_pred             HHHHHHhhhhhc
Q 019475          155 LVISLMSLQKEA  166 (340)
Q Consensus       155 ~l~~l~~~~~~~  166 (340)
                      +++.|+.+....
T Consensus       262 ~~~~l~~~~~~~  273 (288)
T 3kfa_A          262 IHQAFETMFQES  273 (288)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999998887664

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.97  E-value=3.8e-31  Score=232.51  Aligned_cols=162  Identities=19%  Similarity=0.304  Sum_probs=131.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++.......       ...+|..|+|||++
T Consensus       123 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  201 (302)
T 4e5w_A          123 INLKQQLKYAVQICKGMDYLGSRQ-YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECL  201 (302)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCC-cccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeee
Confidence            467899999999999999999999 9999999999999999999999999998765432       34567789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHH----------hhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDL----------IRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      .+..++.++|||||||++|+|++|..|+.......          .........+........+...++.+.+||.+||.
T Consensus       202 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  281 (302)
T 4e5w_A          202 MQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWE  281 (302)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTC
T ss_pred             cCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcC
Confidence            99899999999999999999999997653321111          11112222223333344566778899999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhh
Q 019475          144 SEARERPNAKSLVISLMSLQ  163 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~~~  163 (340)
                      .||.+|||+.++++.|+.+.
T Consensus       282 ~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          282 FQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             SSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998764

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.97  E-value=1.4e-30  Score=229.55  Aligned_cols=161  Identities=24%  Similarity=0.436  Sum_probs=128.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++..++.|+.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......      ....||+.|+|||++.
T Consensus       130 ~~~~~~~~i~~~i~~~l~~lH~~~-i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~  208 (307)
T 2nru_A          130 LSWHMRCKIAQGAANGINFLHENH-HIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALR  208 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-eecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhc
Confidence            578899999999999999999999 999999999999999999999999998865432      2346899999999886


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh----------hhhhHhhhccccCCCCchhHHHHHHHHHHhccc
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS----------KNFLLLMDSALEGHFSNDEGTELVRLASRCLQS  144 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  144 (340)
                      + .++.++||||||+++|+|++|..||..........          ..+...++... ...+...+..+.+++.+||..
T Consensus       209 ~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~  286 (307)
T 2nru_A          209 G-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHE  286 (307)
T ss_dssp             T-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSC-SCCCHHHHHHHHHHHHHHTCS
T ss_pred             C-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccc-cccchHHHHHHHHHHHHHcCC
Confidence            4 58899999999999999999998876532111000          01111111111 234556778899999999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhh
Q 019475          145 EARERPNAKSLVISLMSLQK  164 (340)
Q Consensus       145 ~p~~Rps~~e~l~~l~~~~~  164 (340)
                      +|.+|||+.+++++|+.+..
T Consensus       287 ~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          287 KKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             STTTSCCHHHHHHHHHHHC-
T ss_pred             CcccCcCHHHHHHHHHHHhc
Confidence            99999999999999988753

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=2.8e-31  Score=242.08  Aligned_cols=158  Identities=21%  Similarity=0.240  Sum_probs=123.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc-CCCCeEEecccCcccCCCC---CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD-KDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||++| |+||||||+|||++ .++.+||+|||+++.....   ....+|+.|+|||++.+.
T Consensus       138 ~~~~~~~~~~~qi~~aL~~LH~~~-ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~  216 (394)
T 4e7w_A          138 MPMLLIKLYMYQLLRSLAYIHSIG-ICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGA  216 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCC
Confidence            467788999999999999999999 99999999999999 7899999999999865433   355789999999998765


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh-----------Hhhhcccc------------CCCCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL-----------LLMDSALE------------GHFSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~------------~~~~~~~~~  132 (340)
                       .++.++|||||||++|||++|+.||.+......-.....           ........            ..++...++
T Consensus       217 ~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (394)
T 4e7w_A          217 TNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPP  296 (394)
T ss_dssp             SSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCH
Confidence             589999999999999999999999877532211110000           00000000            012234567


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ++.+||.+||+.||.+|||+.++++|.
T Consensus       297 ~~~~li~~~L~~dP~~R~t~~e~l~hp  323 (394)
T 4e7w_A          297 DAIDLISRLLEYTPSARLTAIEALCHP  323 (394)
T ss_dssp             HHHHHHHHHCCSSGGGSCCHHHHHTSG
T ss_pred             HHHHHHHHHhCCChhhCCCHHHHhcCh
Confidence            899999999999999999999999873

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.3e-30  Score=235.41  Aligned_cols=158  Identities=16%  Similarity=0.216  Sum_probs=124.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~   78 (340)
                      +++..+..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++..... ....+|+.|+|||++.+ ..+
T Consensus       125 l~~~~~~~~~~qi~~~L~~LH~~~-ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~  203 (367)
T 1cm8_A          125 LGEDRIQFLVYQMLKGLRYIHAAG-IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRY  203 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCcCHHHEEEcCCCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCC
Confidence            467888999999999999999999 999999999999999999999999999876543 44578999999999887 678


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh-------------------hHhhh---cccc---CCCCchhHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-------------------LLLMD---SALE---GHFSNDEGTE  133 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~-------------------~~~~~---~~~~---~~~~~~~~~~  133 (340)
                      +.++|||||||++|+|++|+.||.+......-....                   ...+.   ....   .......++.
T Consensus       204 ~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (367)
T 1cm8_A          204 TQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPL  283 (367)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHH
T ss_pred             ChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHH
Confidence            999999999999999999999987643211100000                   00000   0000   0122345678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +.+|+.+||..||.+|||+.++++|.
T Consensus       284 ~~~ll~~mL~~dP~~R~t~~e~l~hp  309 (367)
T 1cm8_A          284 AVNLLEKMLVLDAEQRVTAGEALAHP  309 (367)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHHSG
T ss_pred             HHHHHHHHccCChhHCCCHHHHhcCh
Confidence            99999999999999999999999873

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.97  E-value=7.3e-31  Score=236.58  Aligned_cols=156  Identities=16%  Similarity=0.221  Sum_probs=125.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC---CCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD---GNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.+   +.+||+|||++......   ....||+.|+|||++.
T Consensus       125 ~~~~~~~~~~~qi~~al~~lH~~~-ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~  203 (362)
T 2bdw_A          125 YSEADASHCIQQILESIAYCHSNG-IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLK  203 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccCHHHHc
Confidence            467889999999999999999999 9999999999999865   45999999999876543   2357899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc--CCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE--GHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +..++.++|||||||++|+|++|..||.........    ..+......  .......++++.+||.+||..||.+|||+
T Consensus       204 ~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~  279 (362)
T 2bdw_A          204 KDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLY----AQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITA  279 (362)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             cCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHH----HHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcCH
Confidence            989999999999999999999999998765322211    111111111  11123457889999999999999999999


Q ss_pred             HHHHHHHHh
Q 019475          153 KSLVISLMS  161 (340)
Q Consensus       153 ~e~l~~l~~  161 (340)
                      .++++|.+-
T Consensus       280 ~e~l~hp~~  288 (362)
T 2bdw_A          280 DQALKVPWI  288 (362)
T ss_dssp             HHHTTSHHH
T ss_pred             HHHhcCccc
Confidence            999988653

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.97  E-value=5.3e-31  Score=233.79  Aligned_cols=158  Identities=17%  Similarity=0.240  Sum_probs=128.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||++| |+||||||+||+++.++.+||+|||+++.....      ....+|+.|+|||++.
T Consensus       135 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  213 (322)
T 1p4o_A          135 PSLSKMIQMAGEIADGMAYLNANK-FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK  213 (322)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-CccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhc
Confidence            367889999999999999999999 999999999999999999999999998754332      2234578899999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|+|++ |..||........     ...+........+...+..+.+||.+||..||.+|||+.
T Consensus       214 ~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  288 (322)
T 1p4o_A          214 DGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQV-----LRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFL  288 (322)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHH-----HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHH-----HHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHH
Confidence            9899999999999999999999 7777755422211     111111222234556778899999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 019475          154 SLVISLMSLQK  164 (340)
Q Consensus       154 e~l~~l~~~~~  164 (340)
                      +++++|.....
T Consensus       289 e~l~~L~~~~~  299 (322)
T 1p4o_A          289 EIISSIKEEME  299 (322)
T ss_dssp             HHHHHHGGGSC
T ss_pred             HHHHHHHHhhc
Confidence            99999987644

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.97  E-value=6.6e-31  Score=243.52  Aligned_cols=152  Identities=21%  Similarity=0.355  Sum_probs=126.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.++..++.||+.||.|||+ +| |+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+
T Consensus       245 ~~~~~~~~~~~qi~~aL~~LH~~~g-iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~  323 (446)
T 4ejn_A          245 FSEDRARFYGAEIVSALDYLHSEKN-VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLED  323 (446)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTC-CCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCC-EEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCC
Confidence            5778899999999999999998 88 999999999999999999999999999764322    34578999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----  150 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----  150 (340)
                      ..++.++|||||||++|||++|+.||..........    .+...  ...++...++++.+||.+||..||.+||     
T Consensus       324 ~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~----~i~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  397 (446)
T 4ejn_A          324 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFE----LILME--EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSE  397 (446)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH----HHHHC--CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTT
T ss_pred             CCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHH----HHHhC--CCCCCccCCHHHHHHHHHHcccCHHHhCCCCCC
Confidence            999999999999999999999999987653322211    11111  1234556778899999999999999999     


Q ss_pred             CHHHHHHHH
Q 019475          151 NAKSLVISL  159 (340)
Q Consensus       151 s~~e~l~~l  159 (340)
                      |+.++++|.
T Consensus       398 t~~ell~hp  406 (446)
T 4ejn_A          398 DAKEIMQHR  406 (446)
T ss_dssp             THHHHHTSG
T ss_pred             CHHHHHhCc
Confidence            999999874

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.97  E-value=1.4e-30  Score=226.51  Aligned_cols=154  Identities=19%  Similarity=0.289  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~   78 (340)
                      +++.+++.++.||+.||.|||++| ++||||||+||+++.++.++|+|||++......  ....+++.|+|||++.+..+
T Consensus       106 ~~~~~~~~~~~qi~~~l~~LH~~~-i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  184 (279)
T 3fdn_A          106 FDEQRTATYITELANALSYCHSKR-VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMH  184 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-CEECCCCGGGEEECTTSCEEECSCCEESCC--------CCCCTTCCHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EecccCChHhEEEcCCCCEEEEeccccccCCcccccccCCCCCccCHhHhccCCC
Confidence            467889999999999999999999 999999999999999999999999988654433  34578999999999999899


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.++||||||+++|+|++|..||..........    .+.  ......+...+..+.+||.+||..||.+|||+.++++|
T Consensus       185 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          185 DEKVDLWSLGVLCYEFLVGKPPFEANTYQETYK----RIS--RVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH----HHH--HTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             CccchhHhHHHHHHHHHHCCCCCCCCcHHHHHH----HHH--hCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            999999999999999999999887653322111    111  11223455567889999999999999999999999998


Q ss_pred             HHh
Q 019475          159 LMS  161 (340)
Q Consensus       159 l~~  161 (340)
                      .+-
T Consensus       259 ~~~  261 (279)
T 3fdn_A          259 PWI  261 (279)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            653

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.97  E-value=8.1e-31  Score=228.28  Aligned_cols=156  Identities=21%  Similarity=0.330  Sum_probs=128.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......   ....+++.|+|||++.+..
T Consensus       119 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  197 (284)
T 2a19_B          119 LDKVLALELFEQITKGVDYIHSKK-LINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQD  197 (284)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEEETTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeccCCHHHEEEcCCCCEEECcchhheeccccccccccCCcccccChhhhccCC
Confidence            467889999999999999999999 999999999999999999999999998876543   3446899999999999989


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++||||||+++|+|++|..|+....      .....+.    ....+...+..+.++|.+||..||.+|||+.++++
T Consensus       198 ~~~~~Di~slG~il~~l~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~  267 (284)
T 2a19_B          198 YGKEVDLYALGLILAELLHVCDTAFETS------KFFTDLR----DGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILR  267 (284)
T ss_dssp             CCTHHHHHHHHHHHHHHHSCCSSHHHHH------HHHHHHH----TTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CcchhhhHHHHHHHHHHHhcCCcchhHH------HHHHHhh----cccccccCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            9999999999999999999997653321      1111111    12234455678999999999999999999999999


Q ss_pred             HHHhhhhhcc
Q 019475          158 SLMSLQKEAE  167 (340)
Q Consensus       158 ~l~~~~~~~~  167 (340)
                      +|+.+.....
T Consensus       268 ~l~~~~~~~~  277 (284)
T 2a19_B          268 TLTVWKKSPE  277 (284)
T ss_dssp             HHHHHTC---
T ss_pred             HHHHHhhCCC
Confidence            9998876643

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=8.9e-31  Score=236.00  Aligned_cols=156  Identities=19%  Similarity=0.197  Sum_probs=121.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-------------------------CCCeEEecccCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-------------------------DGNPRLSSFGLMKNS   55 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-------------------------~~~~kl~Dfg~~~~~   55 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||++.                         ++.+||+|||+++..
T Consensus       134 ~~~~~~~~i~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~  212 (360)
T 3llt_A          134 FHIEDIKLYCIEILKALNYLRKMS-LTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFK  212 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceec
Confidence            467889999999999999999999 999999999999975                         789999999999865


Q ss_pred             CCC-CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--------------
Q 019475           56 RDG-KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--------------  120 (340)
Q Consensus        56 ~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--------------  120 (340)
                      ... ....||+.|+|||++.+..++.++|||||||++|+|++|+.||.......... .+......              
T Consensus       213 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~  291 (360)
T 3llt_A          213 SDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLA-MMESIIQPIPKNMLYEATKTNG  291 (360)
T ss_dssp             TSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH-HHHHHTCCCCHHHHHHHTTSGG
T ss_pred             CCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHH-HHHHhcCCCCHHHHhhhhhccC
Confidence            543 45678999999999999999999999999999999999999886542211100 00000000              


Q ss_pred             -------cccCCCCc--------------------hhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          121 -------ALEGHFSN--------------------DEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       121 -------~~~~~~~~--------------------~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                             .....++.                    ..++.+.+||.+||+.||.+|||+.|+++|
T Consensus       292 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~h  356 (360)
T 3llt_A          292 SKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKH  356 (360)
T ss_dssp             GGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             ccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcC
Confidence                   00000000                    012668899999999999999999999876

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.97  E-value=4.6e-31  Score=242.57  Aligned_cols=159  Identities=23%  Similarity=0.229  Sum_probs=122.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-CCeEEecccCcccCCCC---CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-GNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~   76 (340)
                      |++..+..++.||+.||.|||+++ |+||||||+|||++.+ +.+||+|||+++.....   ....+|+.|+|||++.+.
T Consensus       153 l~~~~~~~~~~qi~~aL~~LH~~~-ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~  231 (420)
T 1j1b_A          153 LPVIYVKLYMYQLFRSLAYIHSFG-ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGA  231 (420)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCC
Confidence            467789999999999999999999 9999999999999965 56899999999865433   345789999999999765


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH----------hhhcccc-C------------CCCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL----------LMDSALE-G------------HFSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~------------~~~~~~~~  132 (340)
                       .++.++|||||||++|||++|+.||.+......-...+..          ...+... .            .++...+.
T Consensus       232 ~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  311 (420)
T 1j1b_A          232 TDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPP  311 (420)
T ss_dssp             SSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCH
T ss_pred             CCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCH
Confidence             6899999999999999999999998765321111000000          0000000 0            02234567


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ++.+||.+||..||.+|||+.|+++|..
T Consensus       312 ~~~~Li~~~L~~dP~~R~t~~e~l~hp~  339 (420)
T 1j1b_A          312 EAIALCSRLLEYTPTARLTPLEACAHSF  339 (420)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred             HHHHHHHHhccCChhHCCCHHHHhCCHh
Confidence            8999999999999999999999998743

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.97  E-value=5.9e-31  Score=235.55  Aligned_cols=156  Identities=14%  Similarity=0.276  Sum_probs=124.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.+|++||+|||+++....    .....||+.|+|||++.+.
T Consensus       107 l~~~~~~~~~~qi~~aL~~LH~~~-ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  185 (345)
T 3a8x_A          107 LPEEHARFYSAEISLALNYLHERG-IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGE  185 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCCC
Confidence            467889999999999999999999 99999999999999999999999999985322    2345789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHh----hhh-hhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI----RSK-NFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .++.++|||||||++|||++|..||........    ... ....+...  ...+|...+..+.+||.+||..||.+||+
T Consensus       186 ~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~  263 (345)
T 3a8x_A          186 DYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK--QIRIPRSLSVKAASVLKSFLNKDPKERLG  263 (345)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHTCSSTTTSTT
T ss_pred             CCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHhcCCHhHCCC
Confidence            999999999999999999999999854211100    001 11111111  22345667889999999999999999998


Q ss_pred             H------HHHHHHH
Q 019475          152 A------KSLVISL  159 (340)
Q Consensus       152 ~------~e~l~~l  159 (340)
                      +      .++++|.
T Consensus       264 ~~~~~~~~~i~~hp  277 (345)
T 3a8x_A          264 CHPQTGFADIQGHP  277 (345)
T ss_dssp             CCTTTHHHHHHTSG
T ss_pred             CCCcCCHHHHhcCC
Confidence            5      6777763

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=7.1e-31  Score=244.16  Aligned_cols=158  Identities=16%  Similarity=0.181  Sum_probs=116.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------------   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------------   58 (340)
                      |++..+..|+.||+.||.|||+++ ||||||||+|||++.++.+||+|||+++.....                      
T Consensus       153 l~~~~~~~~~~qi~~aL~~LH~~~-iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (458)
T 3rp9_A          153 LTELHIKTLLYNLLVGVKYVHSAG-ILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFP  231 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC--------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCcccccccccccc
Confidence            567889999999999999999999 999999999999999999999999999865321                      


Q ss_pred             ---------CCcccCCccCCcccc-ccCCCCCccchhhHHHHHHHHHh-----------CCCCCCcchhHH---------
Q 019475           59 ---------KSYSTNLAFTPPEYM-RTGRVTPESVVYSFGTMLLDLLS-----------GKHIPPSHALDL---------  108 (340)
Q Consensus        59 ---------~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~~~el~~-----------g~~~~~~~~~~~---------  108 (340)
                               ...+||+.|+|||++ .+..++.++|||||||++|||++           |+++|++...-.         
T Consensus       232 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~  311 (458)
T 3rp9_A          232 HTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGN  311 (458)
T ss_dssp             -------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC---------------
T ss_pred             ccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccc
Confidence                     234679999999986 45679999999999999999998           566665432100         


Q ss_pred             ---------h-hhhhhhHh--------------------hhc---ccc---CCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475          109 ---------I-RSKNFLLL--------------------MDS---ALE---GHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus       109 ---------~-~~~~~~~~--------------------~~~---~~~---~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                               . ....+..+                    +..   ...   ....+..++++.+||.+||..||.+|||+
T Consensus       312 ~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~  391 (458)
T 3rp9_A          312 DFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRITI  391 (458)
T ss_dssp             -----CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             cccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCCH
Confidence                     0 00000000                    000   000   00112346789999999999999999999


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      .|+++|.
T Consensus       392 ~e~L~Hp  398 (458)
T 3rp9_A          392 NECLAHP  398 (458)
T ss_dssp             HHHHHSG
T ss_pred             HHHhcCH
Confidence            9999984

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.97  E-value=9.2e-31  Score=235.08  Aligned_cols=155  Identities=18%  Similarity=0.187  Sum_probs=124.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC---eEEecccCcccCCCC----CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN---PRLSSFGLMKNSRDG----KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~---~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~   73 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.++.   +||+|||++......    ....||+.|+|||++
T Consensus       127 ~~~~~~~~i~~qi~~al~~lH~~~-ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~  205 (351)
T 3c0i_A          127 YSEAVASHYMRQILEALRYCHDNN-IIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVV  205 (351)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHH
Confidence            467788999999999999999999 999999999999986654   999999999876543    235689999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC--CCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH--FSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+..++.++|||||||++|+|++|..||.......     ...+........  .....+..+.+||.+||..||++|||
T Consensus       206 ~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-----~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  280 (351)
T 3c0i_A          206 KREPYGKPVDVWGCGVILFILLSGCLPFYGTKERL-----FEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERIT  280 (351)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHH-----HHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             cCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHHH-----HHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcC
Confidence            99899999999999999999999999987643211     111111111100  01234678999999999999999999


Q ss_pred             HHHHHHHHHh
Q 019475          152 AKSLVISLMS  161 (340)
Q Consensus       152 ~~e~l~~l~~  161 (340)
                      +.++++|.+-
T Consensus       281 ~~e~l~hp~~  290 (351)
T 3c0i_A          281 VYEALNHPWL  290 (351)
T ss_dssp             HHHHHTSHHH
T ss_pred             HHHHhcChhh
Confidence            9999987543

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.97  E-value=5.4e-31  Score=235.04  Aligned_cols=147  Identities=21%  Similarity=0.247  Sum_probs=123.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---CcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......   ...||+.|+|||++.+..
T Consensus       127 l~~~~~~~i~~qi~~~L~~LH~~~-ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  205 (335)
T 3dls_A          127 LDEPLASYIFRQLVSAVGYLRLKD-IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNP  205 (335)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEEeccCHHHEEEcCCCcEEEeecccceECCCCCceeccCCCccccChhhhcCCC
Confidence            577889999999999999999999 9999999999999999999999999998765443   346899999999998877


Q ss_pred             C-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 V-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      + +.++|||||||++|+|++|..||....          ......  ...+...++++.+||.+||..||.+|||+.+++
T Consensus       206 ~~~~~~DiwslG~il~el~~g~~pf~~~~----------~~~~~~--~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell  273 (335)
T 3dls_A          206 YRGPELEMWSLGVTLYTLVFEENPFCELE----------ETVEAA--IHPPYLVSKELMSLVSGLLQPVPERRTTLEKLV  273 (335)
T ss_dssp             BCSHHHHHHHHHHHHHHHHHSSCSCSSGG----------GGTTTC--CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCCcccchhHHHHHHHHHhCCCchhhHH----------HHHhhc--cCCCcccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence            6 789999999999999999999886521          111111  122344677899999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      +|.+
T Consensus       274 ~hp~  277 (335)
T 3dls_A          274 TDPW  277 (335)
T ss_dssp             HCTT
T ss_pred             cCcc
Confidence            9843

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.97  E-value=9.4e-31  Score=250.98  Aligned_cols=161  Identities=17%  Similarity=0.227  Sum_probs=132.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......       ...+++.|+|||++
T Consensus       433 l~~~~~~~i~~qi~~~L~~LH~~~-iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~  511 (613)
T 2ozo_A          433 IPVSNVAELLHQVSMGMKYLEEKN-FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI  511 (613)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhh
Confidence            578899999999999999999999 9999999999999999999999999998754322       12345789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|||++ |+.||......     .....+........+..++.++.+||.+||..+|++|||+
T Consensus       512 ~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~-----~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~  586 (613)
T 2ozo_A          512 NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP-----EVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDF  586 (613)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH-----HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCH
Confidence            99999999999999999999998 99888764322     2233333334445667788999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcc
Q 019475          153 KSLVISLMSLQKEAE  167 (340)
Q Consensus       153 ~e~l~~l~~~~~~~~  167 (340)
                      .++++.|+.+.....
T Consensus       587 ~~l~~~L~~~~~~~~  601 (613)
T 2ozo_A          587 LTVEQRMRACYYSLA  601 (613)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998776643

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.97  E-value=5.5e-31  Score=235.08  Aligned_cols=164  Identities=17%  Similarity=0.236  Sum_probs=125.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhC---------CCceecccCCCCeEEcCCCCeEEecccCcccCCCC------------CC
Q 019475            2 KWAMRLRVALYLAQALEYCSSK---------GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------------KS   60 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~---------~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------------~~   60 (340)
                      ++.+++.|+.||+.||.|||++         + |+||||||+|||++.++.+||+|||+++.....            ..
T Consensus       109 ~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~-ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~  187 (336)
T 3g2f_A          109 DWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA-ISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAIS  187 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC-EECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CC
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhccccccccc-eeecccccceEEEcCCCcEEEeeccceeecccccccCcccccccccc
Confidence            5778899999999999999999         8 999999999999999999999999999765321            23


Q ss_pred             cccCCccCCcccccc-------CCCCCccchhhHHHHHHHHHhCCCCCCcchh-HHhh------------hhhhhHhh-h
Q 019475           61 YSTNLAFTPPEYMRT-------GRVTPESVVYSFGTMLLDLLSGKHIPPSHAL-DLIR------------SKNFLLLM-D  119 (340)
Q Consensus        61 ~~~~~~y~aPE~~~~-------~~~~~~~Di~slG~~~~el~~g~~~~~~~~~-~~~~------------~~~~~~~~-~  119 (340)
                      ..||+.|+|||++.+       ..++.++|||||||++|||++|..||..... ....            ........ .
T Consensus       188 ~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (336)
T 3g2f_A          188 EVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSR  267 (336)
T ss_dssp             TTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTT
T ss_pred             CCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcc
Confidence            468999999999986       3566789999999999999999766533210 0000            00000111 1


Q ss_pred             ccccCCCC------chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          120 SALEGHFS------NDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       120 ~~~~~~~~------~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                      ......++      ...++.+.+||.+||..||++|||+.++++.|+.+....
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~  320 (336)
T 3g2f_A          268 EKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIW  320 (336)
T ss_dssp             SCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCC
T ss_pred             cccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHH
Confidence            11111111      236678999999999999999999999999999987764

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.97  E-value=1.3e-30  Score=235.89  Aligned_cols=160  Identities=14%  Similarity=0.180  Sum_probs=117.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....   ....||+.|+|||++.+..
T Consensus       124 ~~~~~~~~i~~qi~~al~~lH~~~-ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  202 (371)
T 2xrw_A          124 LDHERMSYLLYQMLCGIKHLHSAG-IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  202 (371)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTSCEEECCCCC----------------CTTCCHHHHTTCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eecccCCHHHEEEcCCCCEEEEEeecccccccccccCCceecCCccCHHHhcCCC
Confidence            467889999999999999999999 999999999999999999999999999865543   3457899999999999989


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh------------------Hhhhc---------------cccC
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL------------------LLMDS---------------ALEG  124 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~------------------~~~~~---------------~~~~  124 (340)
                      ++.++|||||||++|+|++|+.||.+......-.....                  .....               ....
T Consensus       203 ~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (371)
T 2xrw_A          203 YKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFP  282 (371)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSC
T ss_pred             CCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCc
Confidence            99999999999999999999999876432111000000                  00000               0000


Q ss_pred             C---CCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Q 019475          125 H---FSNDEGTELVRLASRCLQSEARERPNAKSLVISLMS  161 (340)
Q Consensus       125 ~---~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  161 (340)
                      .   .+...+..+.+||.+||..||.+|||+.++++|.+-
T Consensus       283 ~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~  322 (371)
T 2xrw_A          283 ADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYI  322 (371)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHH
T ss_pred             ccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcch
Confidence            0   001236789999999999999999999999998653

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=235.49  Aligned_cols=154  Identities=16%  Similarity=0.212  Sum_probs=124.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT--   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~--   75 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++.....   .+..||+.|+|||++.+  
T Consensus       112 l~~~~~~~~~~qi~~aL~~LH~~g-ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~  190 (384)
T 4fr4_A          112 FKEETVKLFICELVMALDYLQNQR-IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRK  190 (384)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceeccCcHHHeEECCCCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCC
Confidence            467889999999999999999999 999999999999999999999999999876443   45678999999999974  


Q ss_pred             -CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-HH
Q 019475           76 -GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-AK  153 (340)
Q Consensus        76 -~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-~~  153 (340)
                       ..++.++|||||||++|+|++|..||........  ......+. .....++...+..+.+||.+||..||.+||+ +.
T Consensus       191 ~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~--~~~~~~~~-~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~  267 (384)
T 4fr4_A          191 GAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSS--KEIVHTFE-TTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLS  267 (384)
T ss_dssp             SCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCH--HHHHHHHH-HCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHH
T ss_pred             CCCCCccceeechHHHHHHHHhCCCCCCCCCCccH--HHHHHHHh-hcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHH
Confidence             4589999999999999999999999865321111  11111111 1123345667789999999999999999998 78


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      ++++|
T Consensus       268 ~l~~h  272 (384)
T 4fr4_A          268 DVQNF  272 (384)
T ss_dssp             HHHTS
T ss_pred             HHHcC
Confidence            87765

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.97  E-value=5.4e-31  Score=233.89  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=124.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..|+.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....      ....||+.|+|||++.
T Consensus       102 ~~~~~~~~i~~qi~~aL~~LH~~g-ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~  180 (323)
T 3tki_A          102 MPEPDAQRFFHQLMAGVVYLHGIG-ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLK  180 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhc
Confidence            578899999999999999999999 999999999999999999999999999754321      3457899999999998


Q ss_pred             cCCC-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRV-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..+ +.++|||||||++|+|++|..||........   ..................+..+.+||.+||..||++|||+.
T Consensus       181 ~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~  257 (323)
T 3tki_A          181 RREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ---EYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIP  257 (323)
T ss_dssp             CSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSH---HHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             cCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHH---HHHHHhcccccCCccccCCHHHHHHHHHHccCChhhCcCHH
Confidence            7775 7789999999999999999999865422111   11111111111122245677899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      |+++|.+
T Consensus       258 eil~h~~  264 (323)
T 3tki_A          258 DIKKDRW  264 (323)
T ss_dssp             HHTTCTT
T ss_pred             HHhhChh
Confidence            9998754

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.97  E-value=9.5e-31  Score=234.75  Aligned_cols=154  Identities=17%  Similarity=0.229  Sum_probs=117.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC---CCCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||++.   ++.+||+|||+++.....   ....||+.|+|||++.
T Consensus       145 ~~~~~~~~i~~qi~~~L~~LH~~~-ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  223 (349)
T 2w4o_A          145 YSERDAADAVKQILEAVAYLHENG-IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILR  223 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGSCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCccCHHHhc
Confidence            477899999999999999999999 999999999999975   889999999998865433   3456899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +..++.++|||||||++|+|++|..||........   ....+.....  ........+.++.+||.+||..||++|||+
T Consensus       224 ~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~  300 (349)
T 2w4o_A          224 GCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQF---MFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTT  300 (349)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHH---HHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             CCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHH---HHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcCH
Confidence            98999999999999999999999998866432211   1111221111  112234567889999999999999999999


Q ss_pred             HHHHHH
Q 019475          153 KSLVIS  158 (340)
Q Consensus       153 ~e~l~~  158 (340)
                      .++++|
T Consensus       301 ~e~l~h  306 (349)
T 2w4o_A          301 FQALQH  306 (349)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            999987

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.97  E-value=5.4e-31  Score=240.30  Aligned_cols=158  Identities=13%  Similarity=0.152  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCC-------------------------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDG-------------------------------------   42 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~-------------------------------------   42 (340)
                      +++.++..|+.||+.||.|||++ | |+||||||+|||++.++                                     
T Consensus       143 ~~~~~~~~i~~qi~~aL~~lH~~~g-ivHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (397)
T 1wak_A          143 LPLPCVKKIIQQVLQGLDYLHTKCR-IIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFL  221 (397)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTC-EECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCC-EecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCccccccc
Confidence            57789999999999999999999 8 99999999999999775                                     


Q ss_pred             ------------CeEEecccCcccCCCC-CCcccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHH-
Q 019475           43 ------------NPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDL-  108 (340)
Q Consensus        43 ------------~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~-  108 (340)
                                  .+||+|||++...... ....||+.|+|||++.+..++.++|||||||++|+|++|+.||....... 
T Consensus       222 ~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~  301 (397)
T 1wak_A          222 VNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEY  301 (397)
T ss_dssp             CCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSS
T ss_pred             ccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCccccc
Confidence                        7999999999866543 44578999999999999999999999999999999999999886432110 


Q ss_pred             ----hhhhhhhHhhhcc-------------------------------------ccCCCCchhHHHHHHHHHHhcccCCC
Q 019475          109 ----IRSKNFLLLMDSA-------------------------------------LEGHFSNDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus       109 ----~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~li~~cl~~~p~  147 (340)
                          .............                                     .....+...+..+.+||.+||+.||.
T Consensus       302 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  381 (397)
T 1wak_A          302 TRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPE  381 (397)
T ss_dssp             CHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGG
T ss_pred             CchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChh
Confidence                0000000000000                                     00123456678899999999999999


Q ss_pred             CCCCHHHHHHHH
Q 019475          148 ERPNAKSLVISL  159 (340)
Q Consensus       148 ~Rps~~e~l~~l  159 (340)
                      +|||+.++++|.
T Consensus       382 ~Rpt~~e~l~hp  393 (397)
T 1wak_A          382 KRATAAECLRHP  393 (397)
T ss_dssp             GSCCHHHHHTSG
T ss_pred             hcCCHHHHhhCc
Confidence            999999999873

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.97  E-value=5.4e-31  Score=230.15  Aligned_cols=157  Identities=18%  Similarity=0.273  Sum_probs=118.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccc---
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM---   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~---   73 (340)
                      +++.+++.|+.||+.||.|||++ | ++||||||+||+++.++.+||+|||++......   ....+|+.|+|||++   
T Consensus       106 ~~~~~~~~i~~qi~~~l~~lH~~~~-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  184 (290)
T 3fme_A          106 IPEDILGKIAVSIVKALEHLHSKLS-VIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPE  184 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHSC-CCCCCCSGGGCEECTTCCEEBCCC---------------CCCCCCSCHHHHSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCC-eecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCCccccChhhcChh
Confidence            57889999999999999999998 8 999999999999999999999999998765443   234689999999996   


Q ss_pred             -ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 -RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 -~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                       .+..++.++|||||||++|+|++|..||........   ..............+...+.++.+|+.+||+.||++|||+
T Consensus       185 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~  261 (290)
T 3fme_A          185 LNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ---QLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTY  261 (290)
T ss_dssp             TTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH---HHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHH---HHHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCH
Confidence             456788999999999999999999998865322211   1222222222222334567889999999999999999999


Q ss_pred             HHHHHHHHh
Q 019475          153 KSLVISLMS  161 (340)
Q Consensus       153 ~e~l~~l~~  161 (340)
                      .++++|.+-
T Consensus       262 ~e~l~hp~f  270 (290)
T 3fme_A          262 PELMQHPFF  270 (290)
T ss_dssp             HHHTTSHHH
T ss_pred             HHHHhCccc
Confidence            999987543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.97  E-value=1e-30  Score=232.23  Aligned_cols=158  Identities=17%  Similarity=0.305  Sum_probs=119.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+ 
T Consensus        97 ~~~~~~~~~~~qi~~aL~~LH~~~-ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~  175 (324)
T 3mtl_A           97 INMHNVKLFLFQLLRGLAYCHRQK-VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGS  175 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCC
Confidence            467889999999999999999999 999999999999999999999999998765432    23467999999999876 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC-------------------------CCCchh
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG-------------------------HFSNDE  130 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~  130 (340)
                      ..++.++|||||||++|+|++|+.||............ ..........                         ......
T Consensus       176 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (324)
T 3mtl_A          176 TDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFI-FRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRL  254 (324)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH-HHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTS
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH-HHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCC
Confidence            56899999999999999999999998775432211111 1110000000                         011234


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          131 GTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       131 ~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      +.++.+||.+||+.||.+|||+.|+++|.+
T Consensus       255 ~~~~~~li~~~L~~dP~~R~t~~e~l~hp~  284 (324)
T 3mtl_A          255 DSDGADLLTKLLQFEGRNRISAEDAMKHPF  284 (324)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHTTSGG
T ss_pred             CHHHHHHHHHHcCcCcccCCCHHHHhcChh
Confidence            678899999999999999999999998743

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.97  E-value=1.7e-30  Score=229.36  Aligned_cols=166  Identities=15%  Similarity=0.199  Sum_probs=123.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......    ....+++.|+|||++.+.
T Consensus       133 ~~~~~~~~i~~qi~~~l~~LH~~~-i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  211 (310)
T 2wqm_A          133 IPERTVWKYFVQLCSALEHMHSRR-VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN  211 (310)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTSCEEECCC------------------CCSSCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-eeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCC
Confidence            467889999999999999999999 999999999999999999999999998765433    234678999999999998


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++||||||+++|+|++|..||..........  ...+.............+.++.+||.+||..||.+|||+.+++
T Consensus       212 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il  289 (310)
T 2wqm_A          212 GYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSL--CKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVY  289 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHH--HHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHH--HHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHH
Confidence            99999999999999999999999886542211111  1111111111122345678899999999999999999999999


Q ss_pred             HHHHhhhhhccCC
Q 019475          157 ISLMSLQKEAEVP  169 (340)
Q Consensus       157 ~~l~~~~~~~~~~  169 (340)
                      +.|..+......+
T Consensus       290 ~~l~~l~~~~~~~  302 (310)
T 2wqm_A          290 DVAKRMHACTASS  302 (310)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHhhhhh
Confidence            9999998876554

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.97  E-value=2.5e-30  Score=230.03  Aligned_cols=153  Identities=18%  Similarity=0.264  Sum_probs=123.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....    ....||+.|+|||++.+.
T Consensus       118 ~~~~~~~~~~~qi~~al~~lH~~~-ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  196 (327)
T 3a62_A          118 FMEDTACFYLAEISMALGHLHQKG-IIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRS  196 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCC
Confidence            467788999999999999999999 999999999999999999999999998754322    345789999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----C
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----N  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s  151 (340)
                      .++.++|||||||++|+|++|..||........    ...+...  ....+...+..+.+||.+||..||.+||     +
T Consensus       197 ~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~----~~~i~~~--~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~  270 (327)
T 3a62_A          197 GHNRAVDWWSLGALMYDMLTGAPPFTGENRKKT----IDKILKC--KLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGD  270 (327)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH----HHHHHHT--CCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTT
T ss_pred             CCCCcccchhHHHHHHHHHHCCCCCCCCCHHHH----HHHHHhC--CCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCC
Confidence            999999999999999999999999876533221    1122221  1234556678899999999999999999     8


Q ss_pred             HHHHHHHHH
Q 019475          152 AKSLVISLM  160 (340)
Q Consensus       152 ~~e~l~~l~  160 (340)
                      +.++++|..
T Consensus       271 ~~e~l~hp~  279 (327)
T 3a62_A          271 AGEVQAHPF  279 (327)
T ss_dssp             HHHHHHSGG
T ss_pred             HHHHHcCCc
Confidence            889988743

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.97  E-value=1e-30  Score=227.96  Aligned_cols=150  Identities=13%  Similarity=0.190  Sum_probs=123.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-------------------CCeEEecccCcccCCCCCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-------------------GNPRLSSFGLMKNSRDGKSY   61 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-------------------~~~kl~Dfg~~~~~~~~~~~   61 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+||+++.+                   ..+||+|||.+.........
T Consensus       112 ~~~~~~~~i~~qi~~al~~lH~~~-ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~  190 (289)
T 1x8b_A          112 FKEAELKDLLLQVGRGLRYIHSMS-LVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVE  190 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCcccc
Confidence            477899999999999999999999 9999999999999844                   47999999999988777777


Q ss_pred             ccCCccCCccccccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHH
Q 019475           62 STNLAFTPPEYMRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASR  140 (340)
Q Consensus        62 ~~~~~y~aPE~~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  140 (340)
                      .+|+.|+|||++.+. .++.++|||||||++|+|++|.+++.....       ...+. .......+...+..+.+||.+
T Consensus       191 ~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~li~~  262 (289)
T 1x8b_A          191 EGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQ-------WHEIR-QGRLPRIPQVLSQEFTELLKV  262 (289)
T ss_dssp             CCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHH-------HHHHH-TTCCCCCSSCCCHHHHHHHHH
T ss_pred             CCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhH-------HHHHH-cCCCCCCCcccCHHHHHHHHH
Confidence            899999999999866 566899999999999999999976543311       11111 122234455677889999999


Q ss_pred             hcccCCCCCCCHHHHHHHH
Q 019475          141 CLQSEARERPNAKSLVISL  159 (340)
Q Consensus       141 cl~~~p~~Rps~~e~l~~l  159 (340)
                      ||..||++|||+.++++|.
T Consensus       263 ~l~~dp~~Rps~~~ll~h~  281 (289)
T 1x8b_A          263 MIHPDPERRPSAMALVKHS  281 (289)
T ss_dssp             HTCSSGGGSCCHHHHHTCT
T ss_pred             HhCCCcccCCCHHHHhhCh
Confidence            9999999999999999873

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.97  E-value=1.7e-30  Score=234.76  Aligned_cols=146  Identities=21%  Similarity=0.261  Sum_probs=121.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCC----CCCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR----DGKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++...    ...+..||+.|+|||++.+.
T Consensus       136 ~~~~~~~~~~~qi~~aL~~LH~~g-ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  214 (373)
T 2r5t_A          136 FLEPRARFYAAEIASALGYLHSLN-IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQ  214 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCC
Confidence            456788889999999999999999 9999999999999999999999999998532    22456789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .++.++|||||||++|||++|..||........    ...+...  ...++...+..+.+||.+||..||.+||++.
T Consensus       215 ~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~----~~~i~~~--~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~  285 (373)
T 2r5t_A          215 PYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEM----YDNILNK--PLQLKPNITNSARHLLEGLLQKDRTKRLGAK  285 (373)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHH----HHHHHHS--CCCCCSSSCHHHHHHHHHHTCSSGGGSTTTT
T ss_pred             CCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHH----HHHHHhc--ccCCCCCCCHHHHHHHHHHcccCHHhCCCCC
Confidence            999999999999999999999999876543222    1122222  1234556778899999999999999999874

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.6e-30  Score=233.16  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=123.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....    ....+|+.|+|||++.+.
T Consensus       109 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~  187 (346)
T 1ua2_A          109 LTPSHIKAYMLMTLQGLEYLHQHW-ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGA  187 (346)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCC
Confidence            467789999999999999999999 999999999999999999999999999865432    345689999999999764


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc---cc-----------CCC--------CchhHHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA---LE-----------GHF--------SNDEGTE  133 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------~~~--------~~~~~~~  133 (340)
                       .++.++|||||||++|+|++|.+||........-...+.......   ..           ...        ....+.+
T Consensus       188 ~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (346)
T 1ua2_A          188 RMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDD  267 (346)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHH
T ss_pred             CCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHH
Confidence             478999999999999999999988776532211111111100000   00           000        1234578


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      +.+||.+||..||++|||+.|+++|.+
T Consensus       268 ~~~li~~~L~~dP~~Rpt~~ell~h~~  294 (346)
T 1ua2_A          268 LLDLIQGLFLFNPCARITATQALKMKY  294 (346)
T ss_dssp             HHHHHHHHHCSSTTTSCCHHHHHTSGG
T ss_pred             HHHHHHHHhccChhhCCCHHHHhcChh
Confidence            999999999999999999999998743

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.97  E-value=3.1e-30  Score=230.11  Aligned_cols=156  Identities=15%  Similarity=0.208  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-------------------CCCeEEecccCcccCCCC-CC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-------------------DGNPRLSSFGLMKNSRDG-KS   60 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-------------------~~~~kl~Dfg~~~~~~~~-~~   60 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.                   ++.+||+|||+++..... ..
T Consensus       115 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~  193 (339)
T 1z57_A          115 FRLDHIRKMAYQICKSVNFLHSNK-LTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHST  193 (339)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCCS
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHCC-CcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCcccccc
Confidence            467889999999999999999999 999999999999987                   668999999999875543 45


Q ss_pred             cccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh---------------------
Q 019475           61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD---------------------  119 (340)
Q Consensus        61 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~---------------------  119 (340)
                      ..+|+.|+|||++.+..++.++|||||||++|||++|..||........... ......                     
T Consensus       194 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~  272 (339)
T 1z57_A          194 LVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAM-MERILGPLPKHMIQKTRKRKYFHHDRL  272 (339)
T ss_dssp             SCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHH-HHHHHCSCCHHHHHHCSCGGGEETTEE
T ss_pred             ccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHH-HHHHhCCCCHHHHhhccchhHHhhccc
Confidence            5789999999999998999999999999999999999999876432211100 000000                     


Q ss_pred             -----------------c-cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          120 -----------------S-ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       120 -----------------~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                                       . ......+...++.+.+||.+||..||.+|||+.|+++|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  329 (339)
T 1z57_A          273 DWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKH  329 (339)
T ss_dssp             CCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             cccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcC
Confidence                             0 00011233457889999999999999999999999876

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.97  E-value=1.1e-30  Score=232.48  Aligned_cols=157  Identities=12%  Similarity=0.157  Sum_probs=125.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC---CCCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||++| |+||||||+|||++.   ++.+||+|||+++.....   ....+|+.|+|||++.
T Consensus       128 ~~~~~~~~i~~ql~~~L~~LH~~g-ivH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  206 (327)
T 3lm5_A          128 VSENDVIRLIKQILEGVYYLHQNN-IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILN  206 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCccCCeeec
Confidence            478899999999999999999999 999999999999998   789999999999876543   3457899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      +..++.++|||||||++|+|++|..||........... + ...............+..+.+||.+||..||.+|||+.+
T Consensus       207 ~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~-i-~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~  284 (327)
T 3lm5_A          207 YDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLN-I-SQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEI  284 (327)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH-H-HHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHH-H-HhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHH
Confidence            99999999999999999999999998876533221111 1 111112222333456788999999999999999999999


Q ss_pred             HHHHHH
Q 019475          155 LVISLM  160 (340)
Q Consensus       155 ~l~~l~  160 (340)
                      +++|.+
T Consensus       285 ll~h~~  290 (327)
T 3lm5_A          285 CLSHSW  290 (327)
T ss_dssp             HTTCGG
T ss_pred             HhCCHh
Confidence            998743

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.97  E-value=6e-31  Score=237.48  Aligned_cols=158  Identities=16%  Similarity=0.205  Sum_probs=114.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~   78 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++..... ....+|+.|+|||++.+ ..+
T Consensus       129 l~~~~~~~i~~qi~~aL~~LH~~g-ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~  207 (367)
T 2fst_X          129 LTDDHVQFLIYQILRGLKYIHSAD-IIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHY  207 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTCCEEECC---------------CCCTTCCHHHHTTCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeCCCCHhhEEECCCCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcCC
Confidence            577889999999999999999999 999999999999999999999999999865543 44578999999999987 678


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh-------------------hHhhhccccCC------CCchhHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-------------------LLLMDSALEGH------FSNDEGTE  133 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~------~~~~~~~~  133 (340)
                      +.++|||||||++|+|++|+.||++......-....                   ...+.......      .....++.
T Consensus       208 ~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (367)
T 2fst_X          208 NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPL  287 (367)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHH
Confidence            999999999999999999999987643211110000                   00000000000      01234577


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +.+||.+||..||.+|||+.++++|.
T Consensus       288 ~~dLl~~mL~~dP~~R~t~~e~L~hp  313 (367)
T 2fst_X          288 AVDLLEKMLVLDSDKRITAAQALAHA  313 (367)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             HHHHHHHhCCCCcccCcCHHHHhcCh
Confidence            99999999999999999999999873

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.97  E-value=1.2e-30  Score=230.56  Aligned_cols=157  Identities=17%  Similarity=0.217  Sum_probs=118.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....       ....||+.|+|||++
T Consensus       113 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  191 (311)
T 3ork_A          113 MTPKRAIEVIADACQALNFSHQNG-IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA  191 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHh
Confidence            578899999999999999999999 999999999999999999999999999765432       234579999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .+..++.++|||||||++|+|++|+.||.................  ..........+.++.+||.+||+.||.+||+..
T Consensus       192 ~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~  269 (311)
T 3ork_A          192 RGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDP--IPPSARHEGLSADLDAVVLKALAKNPENRYQTA  269 (311)
T ss_dssp             HTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCC--CCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSH
T ss_pred             cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCC--CCcccccCCCCHHHHHHHHHHHhcCHhhChhhH
Confidence            999999999999999999999999999876533222111111100  000011223567899999999999999999877


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      +++.+-.
T Consensus       270 ~~l~~~l  276 (311)
T 3ork_A          270 AEMRADL  276 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665533

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=235.48  Aligned_cols=155  Identities=17%  Similarity=0.112  Sum_probs=125.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE--cCCCCeEEecccCcccCCCC---CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF--DKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~--~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||+  +.++.+||+|||+++.....   ....||+.|+|||++.+
T Consensus       184 l~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~  262 (373)
T 2x4f_A          184 LTELDTILFMKQICEGIRHMHQMY-ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNY  262 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeChhhccC
Confidence            467889999999999999999999 9999999999999  56778999999999876543   33468999999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..++.++|||||||++|+|++|..||........    ...+.....  ........++++.+||.+||..||.+|||+.
T Consensus       263 ~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~  338 (373)
T 2x4f_A          263 DFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAET----LNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISAS  338 (373)
T ss_dssp             CBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH----HHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHH
Confidence            8899999999999999999999999876532211    112221111  1111234568899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      ++++|.+
T Consensus       339 e~l~hp~  345 (373)
T 2x4f_A          339 EALKHPW  345 (373)
T ss_dssp             HHHHSHH
T ss_pred             HHhcCcC
Confidence            9999754

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.97  E-value=1.2e-30  Score=236.74  Aligned_cols=154  Identities=15%  Similarity=0.140  Sum_probs=125.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC--CCCeEEecccCcccCCCCC---CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK--DGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||++| |+||||||+|||++.  .+.+||+|||+++......   ...||+.|+|||++.+
T Consensus       146 l~~~~~~~i~~qi~~aL~~LH~~g-ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~  224 (387)
T 1kob_A          146 MSEAEVINYMRQACEGLKHMHEHS-IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDR  224 (387)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccCchhccC
Confidence            467899999999999999999999 999999999999974  4789999999998765442   3468999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--cccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..++.++|||||||++|+|++|..||........    ...+...  ..........+.++.+||.+||..||.+|||+.
T Consensus       225 ~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  300 (387)
T 1kob_A          225 EPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLET----LQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVH  300 (387)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH----HHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHH----HHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            8999999999999999999999999876432211    1111111  112222345678899999999999999999999


Q ss_pred             HHHHHH
Q 019475          154 SLVISL  159 (340)
Q Consensus       154 e~l~~l  159 (340)
                      ++++|.
T Consensus       301 ell~hp  306 (387)
T 1kob_A          301 DALEHP  306 (387)
T ss_dssp             HHHTST
T ss_pred             HHhhCc
Confidence            999874

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.97  E-value=1.1e-30  Score=246.90  Aligned_cols=160  Identities=23%  Similarity=0.315  Sum_probs=132.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....     ....++..|+|||++.+
T Consensus       360 l~~~~~~~i~~qi~~~L~~LH~~~-ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~  438 (535)
T 2h8h_A          360 LRLPQLVDMAAQIASGMAYVERMN-YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY  438 (535)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhcc
Confidence            467899999999999999999999 999999999999999999999999999865432     23345778999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||++ |..||......     .....+........+..++..+.+||.+||..||++|||+.+
T Consensus       439 ~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~  513 (535)
T 2h8h_A          439 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-----EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEY  513 (535)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            999999999999999999999 88887654322     122222333334456677889999999999999999999999


Q ss_pred             HHHHHHhhhhhc
Q 019475          155 LVISLMSLQKEA  166 (340)
Q Consensus       155 ~l~~l~~~~~~~  166 (340)
                      |++.|+.+....
T Consensus       514 l~~~L~~~~~~~  525 (535)
T 2h8h_A          514 LQAFLEDYFTST  525 (535)
T ss_dssp             HHHHHHTSSCCC
T ss_pred             HHHHHHHHhhcc
Confidence            999998876543

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.97  E-value=1.1e-30  Score=228.27  Aligned_cols=160  Identities=19%  Similarity=0.270  Sum_probs=128.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++.......       ...+++.|+|||++
T Consensus       118 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (291)
T 1u46_A          118 FLLGTLSRYAVQVAEGMGYLESKR-FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESL  196 (291)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCC-cccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhh
Confidence            467889999999999999999999 9999999999999999999999999998765432       23457789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++||||||+++|+|++ |..||........    ...+.........+...+..+.+++.+||..||.+|||+
T Consensus       197 ~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  272 (291)
T 1u46_A          197 KTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQI----LHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTF  272 (291)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH----HHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHH----HHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCH
Confidence            98889999999999999999999 8988865432211    112222222233445677889999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q 019475          153 KSLVISLMSLQKE  165 (340)
Q Consensus       153 ~e~l~~l~~~~~~  165 (340)
                      .+++++|..+...
T Consensus       273 ~~l~~~l~~~~~~  285 (291)
T 1u46_A          273 VALRDFLLEAQPT  285 (291)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCcc
Confidence            9999999887654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.97  E-value=1e-30  Score=251.47  Aligned_cols=159  Identities=17%  Similarity=0.256  Sum_probs=131.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.|+.||+.||.|||+++ ||||||||+|||++.++.+||+|||+++......       ...+|+.|+|||++
T Consensus       466 l~~~~~~~i~~qi~~~L~yLH~~~-iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~  544 (635)
T 4fl3_A          466 VKDKNIIELVHQVSMGMKYLEESN-FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI  544 (635)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhh
Confidence            578899999999999999999999 9999999999999999999999999998654332       22356789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|||++ |+.||......     .....+........+..++.++.+||.+||..||++|||+
T Consensus       545 ~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~-----~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~  619 (635)
T 4fl3_A          545 NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS-----EVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGF  619 (635)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCH
Confidence            99999999999999999999998 99888764322     2233333344445566788899999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q 019475          153 KSLVISLMSLQKE  165 (340)
Q Consensus       153 ~e~l~~l~~~~~~  165 (340)
                      .++++.|+.+...
T Consensus       620 ~~l~~~L~~~~~~  632 (635)
T 4fl3_A          620 AAVELRLRNYYYD  632 (635)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876543

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.97  E-value=4e-30  Score=224.15  Aligned_cols=154  Identities=16%  Similarity=0.230  Sum_probs=127.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~   78 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......  ....+++.|+|||++.+..+
T Consensus       111 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  189 (284)
T 2vgo_A          111 FDEQRSATFMEELADALHYCHERK-VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTH  189 (284)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCB
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceecCCCHHHEEEcCCCCEEEecccccccCcccccccccCCCCcCCHHHhccCCC
Confidence            467889999999999999999999 999999999999999999999999998765432  34578999999999999899


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.++||||||+++|+|++|..||.........    ..+..  ....++...+..+.++|.+||..||.+|||+.++++|
T Consensus       190 ~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          190 DEKVDLWCAGVLCYEFLVGMPPFDSPSHTETH----RRIVN--VDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHH----HHHHT--TCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred             CcccchhhHHHHHHHHHHCCCCCCCCCHhHHH----HHHhc--cccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence            99999999999999999999988654322211    11111  1123455667889999999999999999999999987


Q ss_pred             HHh
Q 019475          159 LMS  161 (340)
Q Consensus       159 l~~  161 (340)
                      .+-
T Consensus       264 ~~~  266 (284)
T 2vgo_A          264 PWV  266 (284)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.97  E-value=3.1e-30  Score=231.69  Aligned_cols=158  Identities=18%  Similarity=0.226  Sum_probs=121.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~   72 (340)
                      +++.++..|+.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....        ....+|+.|+|||+
T Consensus       121 ~~~~~~~~i~~qi~~~l~~LH~~~-ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~  199 (351)
T 3mi9_A          121 FTLSEIKRVMQMLLNGLYYIHRNK-ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPEL  199 (351)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchh
Confidence            478899999999999999999999 999999999999999999999999999765421        23467899999999


Q ss_pred             ccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCc-----------------------
Q 019475           73 MRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSN-----------------------  128 (340)
Q Consensus        73 ~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  128 (340)
                      +.+ ..++.++|||||||++|+|++|..||.......... .+...........++.                       
T Consensus       200 ~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
T 3mi9_A          200 LLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLA-LISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDR  278 (351)
T ss_dssp             HTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH-HHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHH
T ss_pred             hcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHH-HHHHHhCCCChhhccccccchhhcccccccccccCHHHH
Confidence            876 457999999999999999999999887643221111 1111110000000000                       


Q ss_pred             ----hhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          129 ----DEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       129 ----~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                          ..++.+.+||.+||..||.+|||+.++++|-+
T Consensus       279 ~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~  314 (351)
T 3mi9_A          279 LKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDF  314 (351)
T ss_dssp             HHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred             hhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCC
Confidence                01456899999999999999999999998843

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.97  E-value=4.5e-30  Score=230.60  Aligned_cols=157  Identities=18%  Similarity=0.196  Sum_probs=123.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE-------------------cCCCCeEEecccCcccCCCC-CC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF-------------------DKDGNPRLSSFGLMKNSRDG-KS   60 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~-------------------~~~~~~kl~Dfg~~~~~~~~-~~   60 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||+                   +.++.+||+|||+++..... ..
T Consensus       120 ~~~~~~~~i~~qi~~~L~~lH~~~-ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~  198 (355)
T 2eu9_A          120 YPLPHVRHMAYQLCHALRFLHENQ-LTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTT  198 (355)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccccC
Confidence            477899999999999999999999 9999999999999                   56789999999999865543 45


Q ss_pred             cccCCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--------------------
Q 019475           61 YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--------------------  120 (340)
Q Consensus        61 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--------------------  120 (340)
                      ..||+.|+|||++.+..++.++|||||||++|+|++|..||.......... ........                    
T Consensus       199 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~  277 (355)
T 2eu9_A          199 IVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLV-MMEKILGPIPSHMIHRTRKQKYFYKGGL  277 (355)
T ss_dssp             SCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH-HHHHHHCCCCHHHHHHCSCGGGEETTEE
T ss_pred             CcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHH-HHHHHcCCCcHHHhhhccchhhhccccc
Confidence            578999999999999999999999999999999999999987643221100 00000000                    


Q ss_pred             -------------------cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          121 -------------------ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       121 -------------------~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                                         ..........+..+.+||.+||..||.+|||+.++++|-
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp  335 (355)
T 2eu9_A          278 VWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHP  335 (355)
T ss_dssp             CCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSG
T ss_pred             ccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcCh
Confidence                               000011233467899999999999999999999998773

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.97  E-value=1.4e-30  Score=233.01  Aligned_cols=165  Identities=13%  Similarity=0.181  Sum_probs=127.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHH--------hCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCS--------SKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH--------~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~   64 (340)
                      +++.+++.++.||+.||.|||        +++ ++||||||+|||++.++.+||+|||++......        ....+|
T Consensus       136 ~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~-ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt  214 (342)
T 1b6c_B          136 VTVEGMIKLALSTASGLAHLHMEIVGTQGKPA-IAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGT  214 (342)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE-EECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-eeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcC
Confidence            478899999999999999999        888 999999999999999999999999998765432        334689


Q ss_pred             CccCCccccccCC------CCCccchhhHHHHHHHHHhC----------CCCCCcchhHHhhhhhhhHh-hhccccCCCC
Q 019475           65 LAFTPPEYMRTGR------VTPESVVYSFGTMLLDLLSG----------KHIPPSHALDLIRSKNFLLL-MDSALEGHFS  127 (340)
Q Consensus        65 ~~y~aPE~~~~~~------~~~~~Di~slG~~~~el~~g----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  127 (340)
                      +.|+|||++.+..      ++.++|||||||++|+|++|          ..||................ .........+
T Consensus       215 ~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (342)
T 1b6c_B          215 KRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP  294 (342)
T ss_dssp             GGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCC
T ss_pred             cccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCc
Confidence            9999999998652      34689999999999999999          55654421111011111111 1222222222


Q ss_pred             -----chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          128 -----NDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       128 -----~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                           ...+..+.+|+.+||..||++|||+.+++++|+.+....
T Consensus       295 ~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~  338 (342)
T 1b6c_B          295 NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  338 (342)
T ss_dssp             GGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             ccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence                 356678999999999999999999999999999987654

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.97  E-value=1.7e-30  Score=237.20  Aligned_cols=155  Identities=19%  Similarity=0.205  Sum_probs=126.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++..+..++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++.....     .+..||+.|+|||++.+
T Consensus       165 ~~e~~~~~~~~qi~~aL~~LH~~g-ivHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~  243 (410)
T 3v8s_A          165 VPEKWARFYTAEVVLALDAIHSMG-FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKS  243 (410)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhc
Confidence            467788999999999999999999 999999999999999999999999999876543     35679999999999986


Q ss_pred             CC----CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCC-
Q 019475           76 GR----VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARE-  148 (340)
Q Consensus        76 ~~----~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~-  148 (340)
                      ..    ++.++|||||||++|||++|+.||.........    ..+....  +..+.....+.++.+||.+||..+|.+ 
T Consensus       244 ~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~----~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rl  319 (410)
T 3v8s_A          244 QGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTY----SKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRL  319 (410)
T ss_dssp             TTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH----HHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCT
T ss_pred             cCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHH----HHHHhccccccCCCcccccHHHHHHHHHHccChhhhC
Confidence            55    788999999999999999999999765433221    2222211  111222356788999999999999988 


Q ss_pred             -CCCHHHHHHHHH
Q 019475          149 -RPNAKSLVISLM  160 (340)
Q Consensus       149 -Rps~~e~l~~l~  160 (340)
                       ||++.++++|.+
T Consensus       320 gR~~~~ei~~Hp~  332 (410)
T 3v8s_A          320 GRNGVEEIKRHLF  332 (410)
T ss_dssp             TSSCHHHHHTSGG
T ss_pred             CCCCHHHHhcCcc
Confidence             999999999854

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=1.1e-30  Score=237.51  Aligned_cols=158  Identities=18%  Similarity=0.223  Sum_probs=123.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc-CCCCeEEecccCcccCCCC---CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD-KDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..++.||+.||.|||++| |+||||||+|||++ .++.+||+|||+++.....   ....+|+.|+|||++.+.
T Consensus       138 l~~~~~~~i~~qi~~aL~~LH~~g-i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~  216 (383)
T 3eb0_A          138 IPMNLISIYIYQLFRAVGFIHSLG-ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGA  216 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCc-CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCC
Confidence            567889999999999999999999 99999999999997 6889999999999865433   345779999999998875


Q ss_pred             C-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHh----------hhc-------------cccCCCCchhHH
Q 019475           77 R-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL----------MDS-------------ALEGHFSNDEGT  132 (340)
Q Consensus        77 ~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~----------~~~-------------~~~~~~~~~~~~  132 (340)
                      . ++.++|||||||++|+|++|+.||.+......-.......          ..+             .+...++...+.
T Consensus       217 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (383)
T 3eb0_A          217 TEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPS  296 (383)
T ss_dssp             SSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCH
T ss_pred             CCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCH
Confidence            4 8999999999999999999999987653221111110000          000             000113344677


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ++.+||.+||..||.+|||+.|+++|-
T Consensus       297 ~~~~li~~~L~~dP~~R~t~~e~l~hp  323 (383)
T 3eb0_A          297 LAIDLLEQILRYEPDLRINPYEAMAHP  323 (383)
T ss_dssp             HHHHHHHHHCCSSGGGSCCHHHHHTSG
T ss_pred             HHHHHHHHHccCChhhCCCHHHHhcCH
Confidence            899999999999999999999999873

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.97  E-value=2.3e-30  Score=227.81  Aligned_cols=155  Identities=18%  Similarity=0.314  Sum_probs=128.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||++| ++||||||+||+++.++.+||+|||++......    ....+++.|+|||++.+.
T Consensus       116 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  194 (303)
T 3a7i_A          116 LDETQIATILREILKGLDYLHSEK-KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQS  194 (303)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcC
Confidence            478899999999999999999999 999999999999999999999999999765432    345688999999999998


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++||||||+++|+|++|..||.......     ....+........+...+..+.+||.+||..||.+|||+.+++
T Consensus       195 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll  269 (303)
T 3a7i_A          195 AYDSKADIWSLGITAIELARGEPPHSELHPMK-----VLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELL  269 (303)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-----HHHHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHT
T ss_pred             CCCchhhhHHHHHHHHHHccCCCCCCCcCHHH-----HHHHhhcCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence            99999999999999999999998886542211     1111222222334456678899999999999999999999999


Q ss_pred             HHHHh
Q 019475          157 ISLMS  161 (340)
Q Consensus       157 ~~l~~  161 (340)
                      +|..-
T Consensus       270 ~~~~~  274 (303)
T 3a7i_A          270 KHKFI  274 (303)
T ss_dssp             TCHHH
T ss_pred             hChhh
Confidence            88654

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.96  E-value=3.3e-30  Score=224.55  Aligned_cols=157  Identities=15%  Similarity=0.192  Sum_probs=125.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC---eEEecccCcccCCCCC---CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN---PRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~---~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~   74 (340)
                      +++.++..++.||+.||.|||+++ ++||||||+||+++.++.   +||+|||++.......   ...+|+.|+|||++.
T Consensus       102 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~  180 (284)
T 3kk8_A          102 YSEADASHCIQQILESIAYCHSNG-IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLK  180 (284)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhc
Confidence            467889999999999999999999 999999999999986655   9999999998665443   357899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      +..++.++||||||+++|+|++|..||................  ...........++.+.+|+.+||+.||++|||+.+
T Consensus       181 ~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~  258 (284)
T 3kk8_A          181 KDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGA--YDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQ  258 (284)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC--CCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             CCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhcc--ccCCchhhcccCHHHHHHHHHHcccChhhCCCHHH
Confidence            9999999999999999999999999987653322211111110  01111122356788999999999999999999999


Q ss_pred             HHHHHH
Q 019475          155 LVISLM  160 (340)
Q Consensus       155 ~l~~l~  160 (340)
                      +++|.+
T Consensus       259 ~l~h~~  264 (284)
T 3kk8_A          259 ALKVPW  264 (284)
T ss_dssp             HTTSHH
T ss_pred             HhcCcc
Confidence            998754

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.96  E-value=8.4e-30  Score=224.25  Aligned_cols=154  Identities=18%  Similarity=0.182  Sum_probs=125.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......      ....+|+.|+|||++.
T Consensus       106 ~~~~~~~~~~~qi~~al~~LH~~~-i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  184 (305)
T 2wtk_C          106 FPVCQAHGYFCQLIDGLEYLHSQG-IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIAN  184 (305)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCC-eeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhcc
Confidence            467889999999999999999999 999999999999999999999999999865432      2346789999999997


Q ss_pred             cCC--CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGR--VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~--~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +..  .+.++||||||+++|+|++|..||.........    ..+...  ....+..++..+.+||.+||..||.+|||+
T Consensus       185 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~----~~i~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  258 (305)
T 2wtk_C          185 GLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLF----ENIGKG--SYAIPGDCGPPLSDLLKGMLEYEPAKRFSI  258 (305)
T ss_dssp             CCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH----HHHHHC--CCCCCSSSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             CcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHH----HHHhcC--CCCCCCccCHHHHHHHHHHccCChhhCCCH
Confidence            644  377999999999999999999988764322211    111111  123455667889999999999999999999


Q ss_pred             HHHHHHHHh
Q 019475          153 KSLVISLMS  161 (340)
Q Consensus       153 ~e~l~~l~~  161 (340)
                      .++++|.+-
T Consensus       259 ~~ll~~~~~  267 (305)
T 2wtk_C          259 RQIRQHSWF  267 (305)
T ss_dssp             HHHHHSHHH
T ss_pred             HHHhcCccc
Confidence            999988543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.96  E-value=1.8e-30  Score=230.93  Aligned_cols=164  Identities=18%  Similarity=0.336  Sum_probs=132.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++.......       ...++..|+|||++
T Consensus       142 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  220 (326)
T 2w1i_A          142 IDHIKLLQYTSQICKGMEYLGTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESL  220 (326)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhh
Confidence            467889999999999999999999 9999999999999999999999999998765432       23456789999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh-----------hhhhhHhhhccccCCCCchhHHHHHHHHHHhc
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR-----------SKNFLLLMDSALEGHFSNDEGTELVRLASRCL  142 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  142 (340)
                      .+..++.++|||||||++|+|++|..|+.........           .......+........+..++.++.+||.+||
T Consensus       221 ~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl  300 (326)
T 2w1i_A          221 TESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECW  300 (326)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHS
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHc
Confidence            9888999999999999999999999776543211110           01122223223333445667889999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhhhhh
Q 019475          143 QSEARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~~~~  165 (340)
                      ..||++|||+.++++.|+.+...
T Consensus       301 ~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          301 NNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCChhhCcCHHHHHHHHHHHHHH
Confidence            99999999999999999988764

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.96  E-value=2.8e-30  Score=238.21  Aligned_cols=158  Identities=14%  Similarity=0.175  Sum_probs=116.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------------
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------------   58 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------------   58 (340)
                      |++..+..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....                      
T Consensus       126 l~~~~~~~i~~qil~aL~~LH~~g-ivHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (432)
T 3n9x_A          126 LTEEHIKTILYNLLLGENFIHESG-IIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNL  204 (432)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCTTCEEC-------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccch
Confidence            578899999999999999999999 999999999999999999999999999865432                      


Q ss_pred             ----CCcccCCccCCcccc-ccCCCCCccchhhHHHHHHHHHhCCC-----------CCCcchh----------------
Q 019475           59 ----KSYSTNLAFTPPEYM-RTGRVTPESVVYSFGTMLLDLLSGKH-----------IPPSHAL----------------  106 (340)
Q Consensus        59 ----~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~~~~el~~g~~-----------~~~~~~~----------------  106 (340)
                          ...+||+.|+|||++ .+..++.++|||||||++|||++|..           +|++...                
T Consensus       205 ~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~  284 (432)
T 3n9x_A          205 KKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKS  284 (432)
T ss_dssp             ------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHH
T ss_pred             hccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccc
Confidence                345789999999986 45669999999999999999998543           3332110                


Q ss_pred             --HHh------------------hhhhhhHhhhcccc-CC-----CCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          107 --DLI------------------RSKNFLLLMDSALE-GH-----FSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       107 --~~~------------------~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                        ...                  ........+..... ..     ..+..++++.+||.+||..||.+|||+.|+++|.
T Consensus       285 ~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp  363 (432)
T 3n9x_A          285 NRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHP  363 (432)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCG
T ss_pred             hHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcCh
Confidence              000                  00000001100000 00     0123567899999999999999999999999874

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.96  E-value=1.2e-30  Score=232.18  Aligned_cols=149  Identities=18%  Similarity=0.298  Sum_probs=117.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----------------CCcccCC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----------------KSYSTNL   65 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----------------~~~~~~~   65 (340)
                      ++..++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....                ....||+
T Consensus       162 ~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  240 (332)
T 3qd2_B          162 EHGVCLHIFIQIAEAVEFLHSKG-LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK  240 (332)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCC-eeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence            34568899999999999999999 999999999999999999999999999865543                2346899


Q ss_pred             ccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccC
Q 019475           66 AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSE  145 (340)
Q Consensus        66 ~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  145 (340)
                      .|+|||++.+..++.++|||||||++|+|++|..|+....       ..................++.+.+||.+||+.|
T Consensus       241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  313 (332)
T 3qd2_B          241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERV-------RIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPS  313 (332)
T ss_dssp             GGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH-------HHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSS
T ss_pred             CccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHH-------HHHHHhhccCCCcccccCChhHHHHHHHHccCC
Confidence            9999999999999999999999999999999875432210       011111111111111234567899999999999


Q ss_pred             CCCCCCHHHHHHH
Q 019475          146 ARERPNAKSLVIS  158 (340)
Q Consensus       146 p~~Rps~~e~l~~  158 (340)
                      |.+|||+.++++|
T Consensus       314 p~~Rps~~~~l~~  326 (332)
T 3qd2_B          314 PTERPEATDIIEN  326 (332)
T ss_dssp             GGGSCCHHHHHHS
T ss_pred             CCcCCCHHHHhhc
Confidence            9999999999986

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.96  E-value=3.9e-30  Score=222.37  Aligned_cols=159  Identities=16%  Similarity=0.222  Sum_probs=129.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++.+++.|+.||+.||.|||+++ +++||||||+||+++.++.++|+|||+..... .....+|+.|+|||++.+..++
T Consensus       108 ~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~  186 (271)
T 3kmu_A          108 VDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ-SPGRMYAPAWVAPEALQKKPED  186 (271)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS-CTTCBSCGGGSCHHHHHSCGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeec-ccCccCCccccChhhhccCCCC
Confidence            578899999999999999999975 39999999999999999999999988865433 2345789999999999876554


Q ss_pred             C---ccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           80 P---ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        80 ~---~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .   ++|||||||++|+|++|+.||........    .............+...+..+.+++.+||..||++|||+.+++
T Consensus       187 ~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il  262 (271)
T 3kmu_A          187 TNRRSADMWSFAVLLWELVTREVPFADLSNMEI----GMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIV  262 (271)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH----HHHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCccccChHHH----HHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence            4   79999999999999999998876432222    1222223334455667788999999999999999999999999


Q ss_pred             HHHHhhhh
Q 019475          157 ISLMSLQK  164 (340)
Q Consensus       157 ~~l~~~~~  164 (340)
                      +.|..+..
T Consensus       263 ~~L~~l~~  270 (271)
T 3kmu_A          263 PILEKMQD  270 (271)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhhc
Confidence            99988753

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.96  E-value=2.9e-30  Score=239.79  Aligned_cols=154  Identities=19%  Similarity=0.281  Sum_probs=127.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||++......   .+..||+.|+|||++.+..
T Consensus       113 l~~~~~~~i~~qi~~aL~~LH~~g-ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  191 (476)
T 2y94_A          113 LDEKESRRLFQQILSGVDYCHRHM-VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRL  191 (476)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CCcccccHHHEEEecCCCeEEEeccchhhccccccccccCCCcCeEChhhccCCC
Confidence            577899999999999999999999 999999999999999999999999999876543   3457899999999998876


Q ss_pred             C-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 V-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      + +.++|||||||++|+|++|..||........    ...+....  ...+...++++.+||.+||..||.+|||+.+++
T Consensus       192 ~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~----~~~i~~~~--~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil  265 (476)
T 2y94_A          192 YAGPEVDIWSSGVILYALLCGTLPFDDDHVPTL----FKKICDGI--FYTPQYLNPSVISLLKHMLQVDPMKRATIKDIR  265 (476)
T ss_dssp             BCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHH----HHHHHTTC--CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred             CCCCcceehhhHHHHHHHhhCCCCCCCCCHHHH----HHHHhcCC--cCCCccCCHHHHHHHHHHcCCCchhCcCHHHHH
Confidence            5 6899999999999999999999876533221    11222211  123445678899999999999999999999999


Q ss_pred             HHHHh
Q 019475          157 ISLMS  161 (340)
Q Consensus       157 ~~l~~  161 (340)
                      +|.+-
T Consensus       266 ~hp~~  270 (476)
T 2y94_A          266 EHEWF  270 (476)
T ss_dssp             TCHHH
T ss_pred             hCHHh
Confidence            87543

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.96  E-value=1.7e-30  Score=231.04  Aligned_cols=160  Identities=20%  Similarity=0.303  Sum_probs=129.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC---CCCeEEecccCcccCCC------CCCcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRD------GKSYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~---~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE   71 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+|||++.   ++.+||+|||++.....      .....+++.|+|||
T Consensus       137 ~~~~~~~~i~~qi~~al~~LH~~~-i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  215 (327)
T 2yfx_A          137 LAMLDLLHVARDIACGCQYLEENH-FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPE  215 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhCC-eecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHh
Confidence            467889999999999999999999 999999999999984   44699999999874322      23345688999999


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           72 YMRTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        72 ~~~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      ++.+..++.++|||||||++|+|++ |..||.......     ....+........+..++..+.+||.+||..||.+||
T Consensus       216 ~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  290 (327)
T 2yfx_A          216 AFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE-----VLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRP  290 (327)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-----HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             HhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHH-----HHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCc
Confidence            9998899999999999999999998 887776543221     1222222223334556678899999999999999999


Q ss_pred             CHHHHHHHHHhhhhhc
Q 019475          151 NAKSLVISLMSLQKEA  166 (340)
Q Consensus       151 s~~e~l~~l~~~~~~~  166 (340)
                      |+.+++++|+.+....
T Consensus       291 s~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          291 NFAIILERIEYCTQDP  306 (327)
T ss_dssp             CHHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHHhcCH
Confidence            9999999999887654

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.96  E-value=4.7e-30  Score=233.14  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh--CCCceecccCCCCeEEc--CCCCeEEecccCcccCCCC-CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSS--KGRALYHDLNAYRILFD--KDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~--~~~iih~dlkp~Nil~~--~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~   75 (340)
                      +++..+..++.||+.||.|||+  .+ |+||||||+|||++  .++.+||+|||+++..... ....+|+.|+|||++.+
T Consensus       154 ~~~~~~~~i~~qi~~al~~lH~~~~~-ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~  232 (382)
T 2vx3_A          154 VSLNLTRKFAQQMCTALLFLATPELS-IIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLG  232 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSTTTC-EECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCCC-EEcCCCCcccEEEecCCCCcEEEEeccCceecccccccccCCccccChHHHcC
Confidence            4788999999999999999995  56 99999999999995  4788999999999876543 45678999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcc
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSH  104 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~  104 (340)
                      ..++.++|||||||++|||++|+.||...
T Consensus       233 ~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          233 MPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999998764

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.96  E-value=1.6e-30  Score=236.72  Aligned_cols=158  Identities=19%  Similarity=0.215  Sum_probs=119.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC-----------CCCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-----------GKSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-----------~~~~~~~~~y~a   69 (340)
                      +++..+..|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||.+.....           .....||+.|+|
T Consensus       125 ~~~~~~~~~~~qi~~~l~~LH~~~-ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  203 (389)
T 3gni_B          125 MNELAIAYILQGVLKALDYIHHMG-YVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLS  203 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccC
Confidence            467889999999999999999999 99999999999999999999999998764321           123467889999


Q ss_pred             cccccc--CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh----h------------------------
Q 019475           70 PEYMRT--GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM----D------------------------  119 (340)
Q Consensus        70 PE~~~~--~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~----~------------------------  119 (340)
                      ||++.+  ..++.++|||||||++|+|++|+.||.................    +                        
T Consensus       204 PE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (389)
T 3gni_B          204 PEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSD  283 (389)
T ss_dssp             HHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------------------------------
T ss_pred             HHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccccccccccccccccccccccccccc
Confidence            999987  5789999999999999999999999865321111000000000    0                        


Q ss_pred             ------------ccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          120 ------------SALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       120 ------------~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                                  .......+...++.+.+||.+||+.||++|||+.++++|.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp  335 (389)
T 3gni_B          284 SLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHS  335 (389)
T ss_dssp             ----------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSG
T ss_pred             ccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCH
Confidence                        0000112334567899999999999999999999999873

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.96  E-value=1.5e-30  Score=234.89  Aligned_cols=158  Identities=16%  Similarity=0.223  Sum_probs=122.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      +++.++..|+.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....       ....||+.|+|||++
T Consensus       125 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  203 (364)
T 3qyz_A          125 LSNDHICYFLYQILRGLKYIHSAN-VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIM  203 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHh
Confidence            578899999999999999999999 999999999999999999999999999865432       334789999999987


Q ss_pred             ccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh-------------------Hhhhccc-cCC-----CC
Q 019475           74 RTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL-------------------LLMDSAL-EGH-----FS  127 (340)
Q Consensus        74 ~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~-------------------~~~~~~~-~~~-----~~  127 (340)
                      .+. .++.++|||||||++|+|++|+.||........-.....                   ....... ...     ..
T Consensus       204 ~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (364)
T 3qyz_A          204 LNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLF  283 (364)
T ss_dssp             HTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHC
T ss_pred             cCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhC
Confidence            654 489999999999999999999998876432111100000                   0000000 000     11


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ...+.++.+||.+||..||++|||+.++++|.
T Consensus       284 ~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp  315 (364)
T 3qyz_A          284 PNADSKALDLLDKMLTFNPHKRIEVEQALAHP  315 (364)
T ss_dssp             TTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSG
T ss_pred             CCCCHHHHHHHHHHcCCChhhCCCHHHHhcCc
Confidence            23467899999999999999999999999874

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.96  E-value=2e-30  Score=234.65  Aligned_cols=159  Identities=16%  Similarity=0.239  Sum_probs=122.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEc------CCCCeEEecccCcccCCCC-CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFD------KDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~------~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~   72 (340)
                      +++..++.|+.||+.||.|||++ | |+||||||+|||++      ..+.+||+|||++...... ....+|+.|+|||+
T Consensus       128 ~~~~~~~~i~~qi~~aL~~lH~~~~-ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~  206 (373)
T 1q8y_A          128 IPLIYVKQISKQLLLGLDYMHRRCG-IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEV  206 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTC-EECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcCC-EEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCCCCCCccccCcHH
Confidence            46788999999999999999998 8 99999999999994      3447999999999876543 44578999999999


Q ss_pred             cccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh--hhhhhHhhh---c---------------------------
Q 019475           73 MRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR--SKNFLLLMD---S---------------------------  120 (340)
Q Consensus        73 ~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~--~~~~~~~~~---~---------------------------  120 (340)
                      +.+..++.++|||||||++|+|++|..||.........  ......+..   .                           
T Consensus       207 ~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  286 (373)
T 1q8y_A          207 LLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISK  286 (373)
T ss_dssp             HHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCC
T ss_pred             HhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhccccc
Confidence            99999999999999999999999999988653211000  000000000   0                           


Q ss_pred             ----------cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          121 ----------ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       121 ----------~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                                .....++...+..+.+||.+||+.||.+|||+.++++|.+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~  336 (373)
T 1q8y_A          287 LKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPW  336 (373)
T ss_dssp             CCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGG
T ss_pred             ccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChh
Confidence                      0011244567889999999999999999999999998743

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.96  E-value=4.5e-30  Score=227.29  Aligned_cols=161  Identities=20%  Similarity=0.292  Sum_probs=126.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------------CCcccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------------KSYSTNLAF   67 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------------~~~~~~~~y   67 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......             ....||+.|
T Consensus       131 ~~~~~~~~i~~qi~~~L~~LH~~~-ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  209 (317)
T 2buj_A          131 LTEDQILWLLLGICRGLEAIHAKG-YAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISY  209 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCccc
Confidence            578899999999999999999999 999999999999999999999999998765421             122468999


Q ss_pred             CCccccccCC---CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhccc
Q 019475           68 TPPEYMRTGR---VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQS  144 (340)
Q Consensus        68 ~aPE~~~~~~---~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  144 (340)
                      +|||++.+..   ++.++|||||||++|+|++|..||.....   .................+...+..+.++|.+||..
T Consensus       210 ~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  286 (317)
T 2buj_A          210 RAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQ---KGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTV  286 (317)
T ss_dssp             CCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHH---TTSCHHHHHHCC--CCCCTTSCHHHHHHHHHHTCS
T ss_pred             CCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhc---ccchhhHHhhccCCCCccccCCHHHHHHHHHHhhc
Confidence            9999987554   68899999999999999999988743211   11111122222222233445678899999999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhhh
Q 019475          145 EARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       145 ~p~~Rps~~e~l~~l~~~~~~  165 (340)
                      ||.+|||+.+++++|+.+...
T Consensus       287 dp~~Rps~~~ll~~L~~~~~~  307 (317)
T 2buj_A          287 DPHQRPHIPLLLSQLEALQPP  307 (317)
T ss_dssp             SGGGSCCHHHHHHHHHHTCCC
T ss_pred             ChhhCCCHHHHHHHhhhcCCC
Confidence            999999999999999887543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.96  E-value=4e-30  Score=248.91  Aligned_cols=151  Identities=19%  Similarity=0.332  Sum_probs=127.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..|+.||+.||.|||+++ ||||||||+||||+.+|++||+|||+++....    ..+..||+.|+|||++.+.
T Consensus       439 ~~~~~~~~~~~qi~~aL~~LH~~g-IiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~  517 (674)
T 3pfq_A          439 FKEPHAVFYAAEIAIGLFFLQSKG-IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQ  517 (674)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTS-EECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCC
Confidence            567889999999999999999999 99999999999999999999999999985332    2456789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA----  152 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~----  152 (340)
                      .++.++|||||||++|||++|+.||.......+    ...+...  ...+|...+.++.+||.+||..||.+||++    
T Consensus       518 ~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~----~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~  591 (674)
T 3pfq_A          518 PYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDEL----FQSIMEH--NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEG  591 (674)
T ss_dssp             CBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHSS--CCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTH
T ss_pred             CCCccceEechHHHHHHHHcCCCCCCCCCHHHH----HHHHHhC--CCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCc
Confidence            999999999999999999999999977533222    1222222  224566778899999999999999999987    


Q ss_pred             -HHHHHH
Q 019475          153 -KSLVIS  158 (340)
Q Consensus       153 -~e~l~~  158 (340)
                       .++++|
T Consensus       592 ~~ei~~h  598 (674)
T 3pfq_A          592 ERDIKEH  598 (674)
T ss_dssp             HHHHHSS
T ss_pred             HHHHhcC
Confidence             778766

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.96  E-value=5.4e-30  Score=227.63  Aligned_cols=158  Identities=18%  Similarity=0.175  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.||+.||.|||++| ++||||||+||+++.++.+||+|||+++.....   ....+|+.|+|||++.+..
T Consensus       117 ~~~~~~~~~~~qi~~~l~~lH~~g-i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  195 (326)
T 1blx_A          117 VPTETIKDMMFQLLRGLDFLHSHR-VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS  195 (326)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceeccCCHHHeEEcCCCCEEEecCcccccccCCCCccccccccceeCHHHHhcCC
Confidence            467889999999999999999999 999999999999999999999999998765432   3456799999999999989


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh---cc------------------ccCCCCchhHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD---SA------------------LEGHFSNDEGTELVR  136 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~~~  136 (340)
                      ++.++|||||||++|+|++|+.||..................   ..                  .........+..+.+
T Consensus       196 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (326)
T 1blx_A          196 YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKD  275 (326)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHH
Confidence            999999999999999999999988764322111111100000   00                  001123456788999


Q ss_pred             HHHHhcccCCCCCCCHHHHHHHH
Q 019475          137 LASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       137 li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ||.+||..||.+|||+.++++|-
T Consensus       276 li~~~L~~dP~~Rpt~~e~l~hp  298 (326)
T 1blx_A          276 LLLKCLTFNPAKRISAYSALSHP  298 (326)
T ss_dssp             HHHHHSCSSTTTSCCHHHHHTSG
T ss_pred             HHHHHcCCCcccCCCHHHHhcCc
Confidence            99999999999999999999763

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.96  E-value=2.6e-30  Score=237.81  Aligned_cols=158  Identities=17%  Similarity=0.163  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMR-   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~-   74 (340)
                      +++..+..++.||+.||.|||+++ ||||||||+|||++.+|++||+|||+++.....     ....||+.|+|||++. 
T Consensus       172 l~e~~~~~~~~qi~~aL~~LH~~g-iiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~  250 (437)
T 4aw2_A          172 LPEEMARFYLAEMVIAIDSVHQLH-YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQA  250 (437)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhh
Confidence            567889999999999999999999 999999999999999999999999999765443     2357899999999997 


Q ss_pred             ----cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCC--
Q 019475           75 ----TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARE--  148 (340)
Q Consensus        75 ----~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~--  148 (340)
                          +..++.++|||||||++|||++|+.||.................... ........++++.+||.+||..+|++  
T Consensus       251 ~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~-~p~~~~~~s~~~~dLi~~lL~~~~~r~~  329 (437)
T 4aw2_A          251 MEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQ-FPTQVTDVSENAKDLIRRLICSREHRLG  329 (437)
T ss_dssp             HHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCC-CCSSCCCSCHHHHHHHHTTSSCGGGCTT
T ss_pred             cccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhcccccc-CCcccccCCHHHHHHHHHHhcccccccC
Confidence                45689999999999999999999999977543322111111100001 11122346788999999999988888  


Q ss_pred             CCCHHHHHHHHH
Q 019475          149 RPNAKSLVISLM  160 (340)
Q Consensus       149 Rps~~e~l~~l~  160 (340)
                      ||+++++++|.+
T Consensus       330 r~~~~eil~Hpf  341 (437)
T 4aw2_A          330 QNGIEDFKKHPF  341 (437)
T ss_dssp             TTTTHHHHTSGG
T ss_pred             CCCHHHHhCCCc
Confidence            999999998853

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.96  E-value=3.8e-30  Score=229.05  Aligned_cols=158  Identities=16%  Similarity=0.191  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCC---CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-   75 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++ .+||+|||+++.....   ....++..|+|||++.+ 
T Consensus       127 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~  205 (330)
T 3nsz_A          127 LTDYDIRFYMYEILKALDYCHSMG-IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDY  205 (330)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcCC
Confidence            467889999999999999999999 99999999999999777 8999999999865543   34567899999999987 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhh---------hhhhHhhh-----------------------cccc
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS---------KNFLLLMD-----------------------SALE  123 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~---------~~~~~~~~-----------------------~~~~  123 (340)
                      ..++.++|||||||++|+|++|..||..........         ......+.                       ....
T Consensus       206 ~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (330)
T 3nsz_A          206 QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVH  285 (330)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCC
T ss_pred             CcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhcc
Confidence            568999999999999999999998885431111000         00000000                       0011


Q ss_pred             CCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          124 GHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       124 ~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ...+...++++.+||.+||..||.+|||+.++++|.
T Consensus       286 ~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp  321 (330)
T 3nsz_A          286 SENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHP  321 (330)
T ss_dssp             TTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSG
T ss_pred             ccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCc
Confidence            111223578899999999999999999999999873

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.96  E-value=3.1e-30  Score=227.71  Aligned_cols=158  Identities=16%  Similarity=0.217  Sum_probs=118.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-   75 (340)
                      +++..+..++.||+.||.|||++| ++||||||+||+++.++.+||+|||++......    ....+|+.|+|||++.+ 
T Consensus        99 ~~~~~~~~i~~~l~~~l~~lH~~~-ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  177 (311)
T 4agu_A           99 VPEHLVKSITWQTLQAVNFCHKHN-CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGD  177 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcC
Confidence            467889999999999999999999 999999999999999999999999999865532    33467899999999976 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH----------hh------hc-cccC--C------CCchh
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL----------LM------DS-ALEG--H------FSNDE  130 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~----------~~------~~-~~~~--~------~~~~~  130 (340)
                      ..++.++|||||||++|+|++|..||...............          ..      .. ....  .      ..+..
T Consensus       178 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 4agu_A          178 TQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNI  257 (311)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTC
T ss_pred             CCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccc
Confidence            56799999999999999999999988765322111100000          00      00 0000  0      01235


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          131 GTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       131 ~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +..+.+||.+||..||.+|||+.++++|.
T Consensus       258 ~~~~~~li~~~L~~dP~~Rpt~~ell~hp  286 (311)
T 4agu_A          258 SYPALGLLKGCLHMDPTERLTCEQLLHHP  286 (311)
T ss_dssp             CHHHHHHHHHHCCSSTTTSCCHHHHHTSG
T ss_pred             cHHHHHHHHHHccCChhhcCCHHHHhcCh
Confidence            67799999999999999999999999873

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.6e-30  Score=233.80  Aligned_cols=157  Identities=19%  Similarity=0.269  Sum_probs=123.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+
T Consensus       156 ~~~~~~~~~~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~  234 (355)
T 1vzo_A          156 FTEHEVQIYVGEIVLALEHLHKLG-IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRG  234 (355)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcC
Confidence            467889999999999999999999 999999999999999999999999998765432     23468999999999986


Q ss_pred             C--CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC---
Q 019475           76 G--RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP---  150 (340)
Q Consensus        76 ~--~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp---  150 (340)
                      .  .++.++|||||||++|+|++|..||..................  .....+...+..+.+||.+||..||.+||   
T Consensus       235 ~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~  312 (355)
T 1vzo_A          235 GDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILK--SEPPYPQEMSALAKDLIQRLLMKDPKKRLGCG  312 (355)
T ss_dssp             CC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHH--CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSS
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhc--cCCCCCcccCHHHHHHHHHHhhhCHHHhcCCC
Confidence            3  4788999999999999999999988643211111111111111  12334566778899999999999999999   


Q ss_pred             --CHHHHHHHHH
Q 019475          151 --NAKSLVISLM  160 (340)
Q Consensus       151 --s~~e~l~~l~  160 (340)
                        |+.++++|..
T Consensus       313 ~~s~~ell~h~~  324 (355)
T 1vzo_A          313 PRDADEIKEHLF  324 (355)
T ss_dssp             TTTHHHHHTSGG
T ss_pred             CCCHHHHHcCcc
Confidence              9999998864

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.96  E-value=1.8e-30  Score=232.09  Aligned_cols=159  Identities=19%  Similarity=0.275  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC----CCeEEecccCcccCCCC----CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD----GNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~----~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~   72 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||+...    +.+||+|||+++.....    .+..+|+.|+|||+
T Consensus       113 ~~~~~~~~~~~qi~~al~~lH~~g-ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~  191 (342)
T 2qr7_A          113 FSEREASAVLFTITKTVEYLHAQG-VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEV  191 (342)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHH
Confidence            467889999999999999999999 9999999999998543    35999999999865433    34567999999999


Q ss_pred             cccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           73 MRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        73 ~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      +.+..++.++|||||||++|+|++|..||....... .......+....  .....+...+.++.+||.+||..||.+||
T Consensus       192 ~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  270 (342)
T 2qr7_A          192 LERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT-PEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRL  270 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSC-HHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSC
T ss_pred             hcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCC-HHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCc
Confidence            988889999999999999999999999886531110 001111111111  11223345678899999999999999999


Q ss_pred             CHHHHHHHHHh
Q 019475          151 NAKSLVISLMS  161 (340)
Q Consensus       151 s~~e~l~~l~~  161 (340)
                      |+.++++|.+-
T Consensus       271 t~~~il~hp~~  281 (342)
T 2qr7_A          271 TAALVLRHPWI  281 (342)
T ss_dssp             CHHHHTTSHHH
T ss_pred             CHHHHhcCCee
Confidence            99999998665

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.96  E-value=6.8e-30  Score=225.46  Aligned_cols=160  Identities=16%  Similarity=0.234  Sum_probs=121.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......     ....+++.|+|||++.+
T Consensus       131 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  209 (309)
T 2h34_A          131 LAPPRAVAIVRQIGSALDAAHAAG-ATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSE  209 (309)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCc-CCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcC
Confidence            577899999999999999999999 999999999999999999999999998765432     23467899999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCC-CH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERP-NA  152 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rp-s~  152 (340)
                      ..++.++||||||+++|+|++|..||.........     ..+....  ....+...+..+.++|.+||..||++|| |+
T Consensus       210 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~  284 (309)
T 2h34_A          210 SHATYRADIYALTCVLYECLTGSPPYQGDQLSVMG-----AHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTC  284 (309)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHH-----HHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSH
T ss_pred             CCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHH-----HHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhH
Confidence            89999999999999999999999998765433221     1111111  1123445667899999999999999999 99


Q ss_pred             HHHHHHHHhhhhhc
Q 019475          153 KSLVISLMSLQKEA  166 (340)
Q Consensus       153 ~e~l~~l~~~~~~~  166 (340)
                      +++++.|+......
T Consensus       285 ~~l~~~l~~~l~~~  298 (309)
T 2h34_A          285 GDLSAAAHAALATA  298 (309)
T ss_dssp             HHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998766554

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.96  E-value=3.4e-30  Score=233.15  Aligned_cols=159  Identities=14%  Similarity=0.221  Sum_probs=121.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~   78 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++..... ....+|+.|+|||++.+ ..+
T Consensus       141 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~  219 (371)
T 4exu_A          141 FSEEKIQYLVYQMLKGLKYIHSAG-VVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHY  219 (371)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CcCCCcCHHHeEECCCCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCCC
Confidence            578899999999999999999999 999999999999999999999999999865543 34578999999999987 678


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh-------------------HhhhccccCC------CCchhHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL-------------------LLMDSALEGH------FSNDEGTE  133 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~------~~~~~~~~  133 (340)
                      +.++|||||||++|+|++|+.||........-.....                   ..........      .....++.
T Consensus       220 ~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (371)
T 4exu_A          220 NQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQ  299 (371)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHH
T ss_pred             CcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChH
Confidence            9999999999999999999999876432211111000                   0000000000      11234678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      +.+||.+||+.||.+|||+.++++|.+
T Consensus       300 ~~~li~~~L~~dP~~Rpt~~ell~hp~  326 (371)
T 4exu_A          300 AADLLEKMLELDVDKRLTAAQALTHPF  326 (371)
T ss_dssp             HHHHHHHHSCSCTTTSCCHHHHHTSGG
T ss_pred             HHHHHHHHCCCChhhcCCHHHHhcCcc
Confidence            999999999999999999999998743

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.96  E-value=3.4e-30  Score=235.88  Aligned_cols=159  Identities=13%  Similarity=0.222  Sum_probs=115.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE----cCCCCeEEecccCcccCCCC-------CCcccCCccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF----DKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTP   69 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~----~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~a   69 (340)
                      |++.++..|+.||+.||.|||+++ |+||||||+|||+    +.++.+||+|||+++.....       ....||+.|+|
T Consensus       125 l~~~~~~~i~~qi~~al~~LH~~~-ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~a  203 (405)
T 3rgf_A          125 LPRGMVKSLLYQILDGIHYLHANW-VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRA  203 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccC
Confidence            467789999999999999999999 9999999999999    67789999999999865432       34568999999


Q ss_pred             ccccccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh-----hhhhhHhhhc-----------------------
Q 019475           70 PEYMRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR-----SKNFLLLMDS-----------------------  120 (340)
Q Consensus        70 PE~~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~-----~~~~~~~~~~-----------------------  120 (340)
                      ||++.+. .++.++|||||||++|+|++|..||.........     ...+..++..                       
T Consensus       204 PE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~  283 (405)
T 3rgf_A          204 PELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMK  283 (405)
T ss_dssp             HHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHH
T ss_pred             chhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhh
Confidence            9999874 4899999999999999999999998643211000     0000000000                       


Q ss_pred             -----cccC--------CCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          121 -----ALEG--------HFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       121 -----~~~~--------~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                           ....        ......+..+.+||.+||..||.+|||+.|+++|.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~  336 (405)
T 3rgf_A          284 DFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPY  336 (405)
T ss_dssp             HCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred             hccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChh
Confidence                 0000        000112457889999999999999999999999854

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.96  E-value=2.5e-30  Score=230.26  Aligned_cols=158  Identities=17%  Similarity=0.201  Sum_probs=116.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc-----CCCCeEEecccCcccCCCC----CCcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD-----KDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~-----~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE   71 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||++     ..+.+||+|||+++.....    ....+|+.|+|||
T Consensus       129 ~~~~~~~~i~~ql~~~l~~LH~~~-ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE  207 (329)
T 3gbz_A          129 VSMRVIKSFLYQLINGVNFCHSRR-CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPE  207 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHH
Confidence            467889999999999999999999 99999999999995     4455999999999765422    3346799999999


Q ss_pred             ccccCC-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc------------ccCC------------C
Q 019475           72 YMRTGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA------------LEGH------------F  126 (340)
Q Consensus        72 ~~~~~~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~------------~  126 (340)
                      ++.+.. ++.++|||||||++|+|++|..||..................+.            ....            .
T Consensus       208 ~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (329)
T 3gbz_A          208 ILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVL  287 (329)
T ss_dssp             HHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHH
T ss_pred             HhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhc
Confidence            998754 89999999999999999999999876532221111111000000            0000            0


Q ss_pred             CchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          127 SNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       127 ~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +...+.++.+||.+||..||.+|||+.++++|.
T Consensus       288 ~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp  320 (329)
T 3gbz_A          288 GALLDDEGLDLLTAMLEMDPVKRISAKNALEHP  320 (329)
T ss_dssp             GGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred             ccccCHHHHHHHHHHccCChhhCCCHHHHhCCc
Confidence            111457899999999999999999999999873

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.96  E-value=2e-30  Score=231.59  Aligned_cols=160  Identities=14%  Similarity=0.165  Sum_probs=105.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC---CCCeEEecccCcccCCCC--CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~---~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||++.   ++.+||+|||+++.....  ....+|+.|+|||++.+
T Consensus       125 l~~~~~~~i~~ql~~~l~~LH~~~-ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~  203 (336)
T 3fhr_A          125 FTEREAAEIMRDIGTAIQFLHSHN-IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGP  203 (336)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEESCSSTTCCEEECCCTTCEEC----------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCccChhhhCC
Confidence            467899999999999999999999 999999999999986   455999999999865543  34567999999999988


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--cccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..++.++|||||||++|+|++|..||...............+...  ..........+..+.+||.+||..||.+|||+.
T Consensus       204 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  283 (336)
T 3fhr_A          204 EKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTIT  283 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHH
Confidence            889999999999999999999999886643322211111111111  111122235678899999999999999999999


Q ss_pred             HHHHHHHh
Q 019475          154 SLVISLMS  161 (340)
Q Consensus       154 e~l~~l~~  161 (340)
                      ++++|.+-
T Consensus       284 ell~hp~~  291 (336)
T 3fhr_A          284 QFMNHPWI  291 (336)
T ss_dssp             HHHHSHHH
T ss_pred             HHhcCccc
Confidence            99998653

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.96  E-value=1.3e-30  Score=231.69  Aligned_cols=157  Identities=19%  Similarity=0.282  Sum_probs=105.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC---CeEEecccCcccCCCC----CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG---NPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~   73 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||++.++   .+||+|||+++.....    ....+|+.|+|||++
T Consensus       103 ~~~~~~~~i~~qi~~~l~~LH~~~-ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~  181 (325)
T 3kn6_A          103 FSETEASYIMRKLVSAVSHMHDVG-VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELL  181 (325)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEEEC----CEEEECCCTTCEECCC--------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHh
Confidence            578899999999999999999999 99999999999998766   7999999999865443    344678999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC--CC----chhHHHHHHHHHHhcccCCC
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH--FS----NDEGTELVRLASRCLQSEAR  147 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~li~~cl~~~p~  147 (340)
                      .+..++.++|||||||++|+|++|..||........ ...............  ++    ...++++.+||.+||..||.
T Consensus       182 ~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  260 (325)
T 3kn6_A          182 NQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLT-CTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPN  260 (325)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHSSCTTC--------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTT
T ss_pred             cCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccc-cccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChh
Confidence            999999999999999999999999998865422111 011111111111111  11    23567899999999999999


Q ss_pred             CCCCHHHHHHHH
Q 019475          148 ERPNAKSLVISL  159 (340)
Q Consensus       148 ~Rps~~e~l~~l  159 (340)
                      +|||+.++++|.
T Consensus       261 ~Rpt~~ell~h~  272 (325)
T 3kn6_A          261 KRLKMSGLRYNE  272 (325)
T ss_dssp             TCCCTTTSTTCG
T ss_pred             HCCCHHHHhcCh
Confidence            999999998763

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.96  E-value=1.9e-30  Score=244.69  Aligned_cols=156  Identities=21%  Similarity=0.296  Sum_probs=128.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++.....   ....||+.|+|||++.+..
T Consensus       283 l~e~~~~~i~~qIl~aL~yLH~~g-IvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~  361 (576)
T 2acx_A          283 FPEARAVFYAAEICCGLEDLHRER-IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNER  361 (576)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EeccCCchheEEEeCCCCeEEEecccceecccCccccccCCCccccCHHHHcCCC
Confidence            467889999999999999999999 999999999999999999999999999876544   2457899999999999989


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NA  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~  152 (340)
                      ++.++|||||||++|||++|..||........ ...+...+. .....++...+.++.+||.+||..||.+||     ++
T Consensus       362 ~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~-~~~i~~~i~-~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa  439 (576)
T 2acx_A          362 YTFSPDWWALGCLLYEMIAGQSPFQQRKKKIK-REEVERLVK-EVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSA  439 (576)
T ss_dssp             ESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCC-HHHHHHHHH-HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHH
T ss_pred             CCccchHHHHHHHHHHHHhCCCCCcccccchh-HHHHHHHhh-cccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCH
Confidence            99999999999999999999999876421100 011111111 122345566788999999999999999999     78


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      .++++|.
T Consensus       440 ~eil~Hp  446 (576)
T 2acx_A          440 REVKEHP  446 (576)
T ss_dssp             HHHHTSG
T ss_pred             HHHHhCh
Confidence            9998874

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.96  E-value=3.5e-30  Score=235.32  Aligned_cols=156  Identities=17%  Similarity=0.175  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMR-   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~-   74 (340)
                      +++..+..++.||+.||.|||+++ |+||||||+|||++.+|++||+|||+++.....     ....||+.|+|||++. 
T Consensus       159 l~~~~~~~~~~qi~~aL~~LH~~g-iiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~  237 (412)
T 2vd5_A          159 IPAEMARFYLAEIVMAIDSVHRLG-YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQA  237 (412)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecccCHHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhh
Confidence            467888999999999999999999 999999999999999999999999999876543     2357899999999997 


Q ss_pred             ------cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCC
Q 019475           75 ------TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARE  148 (340)
Q Consensus        75 ------~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~  148 (340)
                            +..++.++|||||||++|||++|+.||............... .........+...++++.+||.+||. +|.+
T Consensus       238 ~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~-~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~  315 (412)
T 2vd5_A          238 VGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHY-KEHLSLPLVDEGVPEEARDFIQRLLC-PPET  315 (412)
T ss_dssp             HHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTH-HHHCCCC----CCCHHHHHHHHTTSS-CGGG
T ss_pred             cccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhc-ccCcCCCccccCCCHHHHHHHHHHcC-Chhh
Confidence                  356899999999999999999999998765433221111110 00011111234567889999999999 9999


Q ss_pred             C---CCHHHHHHHH
Q 019475          149 R---PNAKSLVISL  159 (340)
Q Consensus       149 R---ps~~e~l~~l  159 (340)
                      |   |+++++++|-
T Consensus       316 Rlgr~~~~ei~~Hp  329 (412)
T 2vd5_A          316 RLGRGGAGDFRTHP  329 (412)
T ss_dssp             CTTTTTHHHHHTSG
T ss_pred             cCCCCCHHHHhcCC
Confidence            8   5999998874

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.96  E-value=3e-30  Score=242.57  Aligned_cols=156  Identities=17%  Similarity=0.267  Sum_probs=126.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..++.++.||+.||.|||++| |+||||||+|||++.+|++||+|||+++.....    ....||+.|+|||++.+.
T Consensus       286 l~e~~~~~~~~qi~~aL~~LH~~g-IvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~  364 (543)
T 3c4z_A          286 FQEPRAIFYTAQIVSGLEHLHQRN-IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGE  364 (543)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcC-CcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCC
Confidence            467788999999999999999999 999999999999999999999999999876543    234789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA----  152 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~----  152 (340)
                      .++.++|||||||++|||++|..||...............+...  ...++...+..+.+||.+||..||.+||++    
T Consensus       365 ~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~  442 (543)
T 3c4z_A          365 EYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQ--AVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGS  442 (543)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTB
T ss_pred             CCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhc--ccCCCcccCHHHHHHHHHhccCCHhHCCCCcccC
Confidence            99999999999999999999999987642110011111112221  223456678899999999999999999964    


Q ss_pred             -HHHHHHH
Q 019475          153 -KSLVISL  159 (340)
Q Consensus       153 -~e~l~~l  159 (340)
                       .++++|.
T Consensus       443 a~ei~~Hp  450 (543)
T 3c4z_A          443 CDGLRTHP  450 (543)
T ss_dssp             SHHHHTSG
T ss_pred             HHHHHcCc
Confidence             7787663

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.96  E-value=1e-29  Score=220.71  Aligned_cols=153  Identities=19%  Similarity=0.266  Sum_probs=123.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE---cCCCCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF---DKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~---~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.|+.||+.||.|||+++ ++||||||+||++   +.++.+||+|||++......   ....+|+.|+|||++.
T Consensus       103 ~~~~~~~~i~~~i~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~  181 (277)
T 3f3z_A          103 FRESDAARIMKDVLSAVAYCHKLN-VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLE  181 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCccChHHhc
Confidence            477899999999999999999999 9999999999999   78899999999999865543   3456899999999987


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCc----hhHHHHHHHHHHhcccCCCCCC
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSN----DEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      + .++.++||||||+++|+|++|..||.........    ..+.....  ..+.    ..++.+.+||.+||+.||.+||
T Consensus       182 ~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~dp~~R~  254 (277)
T 3f3z_A          182 G-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVM----LKIREGTF--TFPEKDWLNVSPQAESLIRRLLTKSPKQRI  254 (277)
T ss_dssp             T-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHCCC--CCCHHHHTTSCHHHHHHHHHHTCSSTTTSC
T ss_pred             c-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHH----HHHHhCCC--CCCchhhhcCCHHHHHHHHHHccCChhhCc
Confidence            5 4899999999999999999999988764322211    11111111  1121    3467899999999999999999


Q ss_pred             CHHHHHHHHHh
Q 019475          151 NAKSLVISLMS  161 (340)
Q Consensus       151 s~~e~l~~l~~  161 (340)
                      |+.++++|.+-
T Consensus       255 s~~~~l~h~~~  265 (277)
T 3f3z_A          255 TSLQALEHEWF  265 (277)
T ss_dssp             CHHHHTTSHHH
T ss_pred             CHHHHhcCHHH
Confidence            99999987543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.96  E-value=3e-30  Score=228.95  Aligned_cols=153  Identities=18%  Similarity=0.205  Sum_probs=123.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC----CeEEecccCcccCCCC---CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG----NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++    .+||+|||++......   ....||+.|+|||++
T Consensus       112 ~~~~~~~~i~~qi~~aL~~lH~~~-ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~  190 (321)
T 2a2a_A          112 LSEEEATSFIKQILDGVNYLHTKK-IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIV  190 (321)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCCCccCcccc
Confidence            357789999999999999999999 99999999999999888    7999999999876543   344689999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+..++.++|||||||++|+|++|..||.........    ..+.....  ....+...+..+.+||.+||..||.+|||
T Consensus       191 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  266 (321)
T 2a2a_A          191 NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETL----ANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLT  266 (321)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHH----HHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCC
T ss_pred             cCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHH----HHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcC
Confidence            9989999999999999999999999988764322111    11111110  00111234678999999999999999999


Q ss_pred             HHHHHHH
Q 019475          152 AKSLVIS  158 (340)
Q Consensus       152 ~~e~l~~  158 (340)
                      +.++++|
T Consensus       267 ~~e~l~h  273 (321)
T 2a2a_A          267 IQEALRH  273 (321)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9999987

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.96  E-value=9.5e-30  Score=228.69  Aligned_cols=158  Identities=14%  Similarity=0.218  Sum_probs=121.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCcccccc-CCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRT-GRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~-~~~   78 (340)
                      +++.++..++.||+.||.|||++| ++||||||+||+++.++.+||+|||+++..... ....+|+.|+|||++.+ ..+
T Consensus       123 ~~~~~~~~i~~qi~~al~~LH~~~-ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  201 (353)
T 3coi_A          123 FSEEKIQYLVYQMLKGLKYIHSAG-VVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHY  201 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSSCCGGGEEECTTCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCHHHEeECCCCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCC
Confidence            478899999999999999999999 999999999999999999999999999865543 34578999999999887 678


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh-------------------Hh---hhcccc---CCCCchhHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL-------------------LL---MDSALE---GHFSNDEGTE  133 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~---~~~~~~~~~~  133 (340)
                      +.++|||||||++|+|++|..||........-.....                   ..   +.....   .......+..
T Consensus       202 ~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (353)
T 3coi_A          202 NQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQ  281 (353)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHH
Confidence            9999999999999999999998876432111000000                   00   000001   1122356788


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +.+||.+||..||++|||+.++++|.
T Consensus       282 ~~~li~~~L~~dp~~Rpt~~e~l~hp  307 (353)
T 3coi_A          282 AADLLEKMLELDVDKRLTAAQALTHP  307 (353)
T ss_dssp             HHHHHHHHSCSCTTTSCCHHHHHTSG
T ss_pred             HHHHHHHHcCCCcccCCCHHHHhcCc
Confidence            99999999999999999999999874

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.96  E-value=8e-31  Score=233.22  Aligned_cols=158  Identities=20%  Similarity=0.320  Sum_probs=107.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccc---
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM---   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~---   73 (340)
                      +++..+..++.|++.||.|||++ + ++||||||+||+++.++.+||+|||+++.....   ....||+.|+|||++   
T Consensus       122 ~~~~~~~~i~~~i~~~l~~lH~~~~-ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  200 (327)
T 3aln_A          122 IPEEILGKITLATVKALNHLKENLK-IIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPS  200 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHS-CCCSCCCGGGEEEETTTEEEECCCSSSCC-------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHhccCC-EeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCCccccCceeeccc
Confidence            46788999999999999999999 8 999999999999999999999999999765433   233688999999998   


Q ss_pred             -ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc---cccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           74 -RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS---ALEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        74 -~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                       .+..++.++|||||||++|+|++|..||.......   .........   .+........+..+.+||.+||..||.+|
T Consensus       201 ~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  277 (327)
T 3aln_A          201 ASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF---DQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKR  277 (327)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHSCCCSSCC----------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGS
T ss_pred             cCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH---HHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhC
Confidence             45668999999999999999999999886532111   011111111   11111223467889999999999999999


Q ss_pred             CCHHHHHHHHHhh
Q 019475          150 PNAKSLVISLMSL  162 (340)
Q Consensus       150 ps~~e~l~~l~~~  162 (340)
                      ||+.++++|..-.
T Consensus       278 ps~~ell~hp~~~  290 (327)
T 3aln_A          278 PKYKELLKHPFIL  290 (327)
T ss_dssp             CCHHHHTTSHHHH
T ss_pred             cCHHHHHhChHHH
Confidence            9999999875543

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.96  E-value=1.7e-30  Score=225.87  Aligned_cols=156  Identities=19%  Similarity=0.270  Sum_probs=125.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCC----ceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGR----ALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~----iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~   72 (340)
                      +++.+++.++.||+.||.|||+++.    ++||||||+||+++.++.+||+|||+++......    ...+++.|+|||+
T Consensus       108 ~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  187 (279)
T 2w5a_A          108 LDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQ  187 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHH
Confidence            5788999999999999999999863    9999999999999999999999999988765442    2367899999999


Q ss_pred             cccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           73 MRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        73 ~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +.+..++.++||||||+++|+|++|..||........     ...+........+...+.++.++|.+||..||.+|||+
T Consensus       188 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  262 (279)
T 2w5a_A          188 MNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKEL-----AGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSV  262 (279)
T ss_dssp             HHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-----HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHH-----HHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCH
Confidence            9988899999999999999999999988876432211     11122222234455677889999999999999999999


Q ss_pred             HHHHHHHHh
Q 019475          153 KSLVISLMS  161 (340)
Q Consensus       153 ~e~l~~l~~  161 (340)
                      .+++++++.
T Consensus       263 ~~ll~~~~~  271 (279)
T 2w5a_A          263 EEILENPLI  271 (279)
T ss_dssp             HHHHTSTTC
T ss_pred             HHHHhChhh
Confidence            999987644

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.96  E-value=7.2e-30  Score=229.99  Aligned_cols=158  Identities=16%  Similarity=0.179  Sum_probs=122.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHH--hCCCceecccCCCCeEEcC-CCCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCS--SKGRALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH--~~~~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++..+..++.||+.||.|||  +++ |+||||||+|||++. ++.+||+|||+++.....   ....||+.|+|||++.
T Consensus       126 ~~~~~~~~~~~qi~~al~~lH~~~~~-ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  204 (360)
T 3e3p_A          126 PPPILIKVFLFQLIRSIGCLHLPSVN-VCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIF  204 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSTTTC-CBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCC-eecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHc
Confidence            356778899999999999999  998 999999999999997 899999999999876543   3456799999999987


Q ss_pred             cCC-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH----------hhhc----------------cccCCCC
Q 019475           75 TGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL----------LMDS----------------ALEGHFS  127 (340)
Q Consensus        75 ~~~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~----------~~~~----------------~~~~~~~  127 (340)
                      +.. ++.++|||||||++|+|++|+.||........-......          ....                ......+
T Consensus       205 ~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (360)
T 3e3p_A          205 GNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHS  284 (360)
T ss_dssp             TCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCC
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhh
Confidence            654 899999999999999999999988765322111111100          0000                0001122


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ...+.++.+||.+||+.||.+|||+.++++|.
T Consensus       285 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp  316 (360)
T 3e3p_A          285 LKDAKEAYDLLSALLQYLPEERMKPYEALCHP  316 (360)
T ss_dssp             CTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSG
T ss_pred             ccccHHHHHHHHHHhccCccccCCHHHHhcCc
Confidence            33578899999999999999999999999874

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.96  E-value=4.8e-30  Score=222.90  Aligned_cols=151  Identities=18%  Similarity=0.212  Sum_probs=104.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......    ....+|+.|+|||++.+.
T Consensus       109 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  187 (278)
T 3cok_A          109 FSENEARHFMHQIITGMLYLHSHG-ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRS  187 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSSCCGGGEEECTTCCEEECCCTTCEECC------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCC
Confidence            478899999999999999999999 999999999999999999999999999865432    234678999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++||||||+++|+|++|..||........    .......  ....+...+.++.+||.+||..||++|||+.+++
T Consensus       188 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l  261 (278)
T 3cok_A          188 AHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT----LNKVVLA--DYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVL  261 (278)
T ss_dssp             ----CTHHHHHHHHHHHHHHSSCSSCCCSCC---------CCSS--CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHT
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH----HHHHhhc--ccCCccccCHHHHHHHHHHcccCHhhCCCHHHHh
Confidence            899999999999999999999988865421111    1111111  1123445678899999999999999999999998


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      +|
T Consensus       262 ~h  263 (278)
T 3cok_A          262 DH  263 (278)
T ss_dssp             TS
T ss_pred             cC
Confidence            76

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.96  E-value=5.8e-30  Score=223.28  Aligned_cols=153  Identities=19%  Similarity=0.261  Sum_probs=117.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE---cCCCCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF---DKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~---~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++..++.|+.||+.||.|||+++ |+||||||+||++   +.++.+||+|||++......   ....+|+.|+|||++.
T Consensus       121 ~~~~~~~~i~~qi~~~L~~LH~~~-ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~  199 (285)
T 3is5_A          121 LSEGYVAELMKQMMNALAYFHSQH-VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFK  199 (285)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCChHHhc
Confidence            467889999999999999999999 9999999999999   45678999999999765433   3456899999999986


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                       ..++.++|||||||++|+|++|..||..............  ...... ......++.+.+||.+||+.||++|||+.+
T Consensus       200 -~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  275 (285)
T 3is5_A          200 -RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATY--KEPNYA-VECRPLTPQAVDLLKQMLTKDPERRPSAAQ  275 (285)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH--CCCCCC-C--CCCCHHHHHHHHHHTCSCTTTSCCHHH
T ss_pred             -cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhcc--CCcccc-cccCcCCHHHHHHHHHHccCChhhCcCHHH
Confidence             5688999999999999999999999876543322211111  111111 111234678999999999999999999999


Q ss_pred             HHHH
Q 019475          155 LVIS  158 (340)
Q Consensus       155 ~l~~  158 (340)
                      +++|
T Consensus       276 ~l~h  279 (285)
T 3is5_A          276 VLHH  279 (285)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            9876

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.96  E-value=7.9e-30  Score=229.10  Aligned_cols=158  Identities=16%  Similarity=0.151  Sum_probs=121.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------------CCcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------------KSYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------------~~~~~~~~   66 (340)
                      +++.++..++.||+.||.|||++| ++||||||+|||++.++.+||+|||+++.....              ....||+.
T Consensus       109 ~~~~~~~~~~~qi~~~L~~LH~~~-ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~  187 (353)
T 2b9h_A          109 LSDDHIQYFIYQTLRAVKVLHGSN-VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRW  187 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhcccccc
Confidence            577899999999999999999999 999999999999999999999999999865422              12367899


Q ss_pred             cCCcccccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh--------------------hhHhhhccccC-
Q 019475           67 FTPPEYMRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN--------------------FLLLMDSALEG-  124 (340)
Q Consensus        67 y~aPE~~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~-  124 (340)
                      |+|||++.+ ..++.++|||||||++|+|++|..||............                    ........... 
T Consensus       188 y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
T 2b9h_A          188 YRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYP  267 (353)
T ss_dssp             GCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCC
T ss_pred             ccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCC
Confidence            999998764 67899999999999999999999998765322111000                    00000000000 


Q ss_pred             -----CCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          125 -----HFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       125 -----~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                           ...+..+.++.+||.+||..||.+|||+.++++|.
T Consensus       268 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  307 (353)
T 2b9h_A          268 AAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHP  307 (353)
T ss_dssp             CCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             CcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCc
Confidence                 01124567899999999999999999999999874

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.96  E-value=7.7e-30  Score=225.95  Aligned_cols=160  Identities=21%  Similarity=0.285  Sum_probs=120.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC---------CCCcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD---------GKSYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~---------~~~~~~~~~y~aPE   71 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++ ++.+||+|||++.....         .....|++.|+|||
T Consensus       127 ~~~~~~~~i~~qi~~al~~lH~~~-i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE  204 (319)
T 2y4i_B          127 LDVNKTRQIAQEIVKGMGYLHAKG-ILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPE  204 (319)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTT-CCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChH
Confidence            467899999999999999999999 99999999999998 78999999999765421         12235789999999


Q ss_pred             cccc---------CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhc
Q 019475           72 YMRT---------GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCL  142 (340)
Q Consensus        72 ~~~~---------~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  142 (340)
                      ++.+         ..++.++|||||||++|+|++|..||.........    ..+.........+...+.++.+++.+||
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~~l  280 (319)
T 2y4i_B          205 IIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAII----WQMGTGMKPNLSQIGMGKEISDILLFCW  280 (319)
T ss_dssp             HHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHH----HHHHTTCCCCCCCSSCCTTHHHHHHHHH
T ss_pred             HhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH----HHhccCCCCCCCcCCCCHHHHHHHHHHh
Confidence            9874         34788999999999999999999988764332221    1111111111122245667999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          143 QSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                      ..+|.+|||+.++++.|+.+....
T Consensus       281 ~~~p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          281 AFEQEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             CSSTTTSCCHHHHHHHHTTC----
T ss_pred             cCChhhCcCHHHHHHHHHHHHHhh
Confidence            999999999999999998887664

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.96  E-value=3.7e-30  Score=231.95  Aligned_cols=163  Identities=17%  Similarity=0.274  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCC--CCCCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSR--DGKSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~--~~~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..|+.||+.||.|||++ + |+||||||+||+++.++.+||+|||++....  ......||+.|+|||++.+..
T Consensus       128 ~~~~~~~~i~~~i~~~l~~lh~~~~-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  206 (360)
T 3eqc_A          128 IPEQILGKVSIAVIKGLTYLREKHK-IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTH  206 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHC-CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCC-EEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHHHHcCCC
Confidence            46788999999999999999996 7 9999999999999999999999999986432  224457899999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhh--------------------------------------hhhHhhh
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK--------------------------------------NFLLLMD  119 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~--------------------------------------~~~~~~~  119 (340)
                      ++.++|||||||++|+|++|+.||...........                                      ....+..
T Consensus       207 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (360)
T 3eqc_A          207 YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVN  286 (360)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------CCCHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhc
Confidence            99999999999999999999999876432221110                                      0000111


Q ss_pred             ccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhh
Q 019475          120 SALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK  164 (340)
Q Consensus       120 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~  164 (340)
                      ...........+.++.+||.+||..||++|||+.++++|.+-...
T Consensus       287 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~  331 (360)
T 3eqc_A          287 EPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRS  331 (360)
T ss_dssp             SCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHH
T ss_pred             cCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcc
Confidence            111111122356789999999999999999999999998664433

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=5.7e-30  Score=229.30  Aligned_cols=153  Identities=21%  Similarity=0.179  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC--CeEEecccCcccCCC--------CCCcccCCccCCccc
Q 019475            3 WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG--NPRLSSFGLMKNSRD--------GKSYSTNLAFTPPEY   72 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~--~~kl~Dfg~~~~~~~--------~~~~~~~~~y~aPE~   72 (340)
                      +..+..|+.||+.||.|||+++ |+||||||+||+++.++  .+||+|||+++....        .....||+.|+|||+
T Consensus       167 ~~~~~~i~~qi~~~l~~LH~~~-ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~  245 (345)
T 3hko_A          167 EKLISNIMRQIFSALHYLHNQG-ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEV  245 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC-ccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchh
Confidence            4567889999999999999999 99999999999998776  899999999975432        134568999999999


Q ss_pred             ccc--CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC--CCchhHHHHHHHHHHhcccCCCC
Q 019475           73 MRT--GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH--FSNDEGTELVRLASRCLQSEARE  148 (340)
Q Consensus        73 ~~~--~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~  148 (340)
                      +.+  ..++.++|||||||++|+|++|..||........    ...+........  .....++.+.+||.+||..+|.+
T Consensus       246 ~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  321 (345)
T 3hko_A          246 LNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADT----ISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDE  321 (345)
T ss_dssp             HTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTT
T ss_pred             hccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHH----HHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhH
Confidence            975  6788999999999999999999998876432221    122222222111  11235678999999999999999


Q ss_pred             CCCHHHHHHHHH
Q 019475          149 RPNAKSLVISLM  160 (340)
Q Consensus       149 Rps~~e~l~~l~  160 (340)
                      |||+.++++|.+
T Consensus       322 Rps~~~~l~hp~  333 (345)
T 3hko_A          322 RFDAMRALQHPW  333 (345)
T ss_dssp             SCCHHHHHHSHH
T ss_pred             CCCHHHHhcChh
Confidence            999999998754

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.96  E-value=1e-29  Score=229.37  Aligned_cols=154  Identities=20%  Similarity=0.267  Sum_probs=122.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccC-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG-   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~-   76 (340)
                      +++..+..++.||+.||.|||++| ++|+||||+||+++.+|.+||+|||++......   ....||+.|+|||++.+. 
T Consensus       197 l~~~~~~~i~~qi~~~L~~LH~~g-i~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  275 (365)
T 2y7j_A          197 LSEKETRSIMRSLLEAVSFLHANN-IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSM  275 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCCCCHHHEEECCCCCEEEEecCcccccCCCcccccCCCCCCccChhhccccc
Confidence            577889999999999999999999 999999999999999999999999998876543   345789999999998643 


Q ss_pred             -----CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC--CCchhHHHHHHHHHHhcccCCCCC
Q 019475           77 -----RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH--FSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        77 -----~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                           .++.++|||||||++|+|++|..||.........    ..+........  .....+..+.+||.+||..||++|
T Consensus       276 ~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  351 (365)
T 2y7j_A          276 DETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILML----RMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEAR  351 (365)
T ss_dssp             CTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTS
T ss_pred             cccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHH----HHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHC
Confidence                 5788999999999999999999988664322111    11111111100  012345679999999999999999


Q ss_pred             CCHHHHHHHH
Q 019475          150 PNAKSLVISL  159 (340)
Q Consensus       150 ps~~e~l~~l  159 (340)
                      ||+.++++|.
T Consensus       352 ps~~ell~hp  361 (365)
T 2y7j_A          352 LTAEQALQHP  361 (365)
T ss_dssp             CCHHHHHHSG
T ss_pred             cCHHHHhcCc
Confidence            9999999873

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.96  E-value=6.2e-30  Score=246.83  Aligned_cols=159  Identities=21%  Similarity=0.296  Sum_probs=129.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++..++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......     ...+++.|+|||++.+
T Consensus       488 l~~~~~~~i~~qi~~aL~~LH~~g-ivHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~  566 (656)
T 2j0j_A          488 LDLASLILYAYQLSTALAYLESKR-FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINF  566 (656)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcC
Confidence            468889999999999999999999 9999999999999999999999999998765432     2345678999999998


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||++ |..||.......     ....+........+..+++.+.+||.+||..||.+|||+.+
T Consensus       567 ~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~-----~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~e  641 (656)
T 2j0j_A          567 RRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND-----VIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTE  641 (656)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-----HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH-----HHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHH
Confidence            899999999999999999997 888876543221     11222222233455677789999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      +++.|..+...
T Consensus       642 l~~~L~~il~~  652 (656)
T 2j0j_A          642 LKAQLSTILEE  652 (656)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.96  E-value=1.2e-29  Score=223.27  Aligned_cols=155  Identities=16%  Similarity=0.210  Sum_probs=125.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE---cCCCCeEEecccCcccCCCCC--CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF---DKDGNPRLSSFGLMKNSRDGK--SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~---~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~y~aPE~~~~   75 (340)
                      +++.++..++.||+.||.|||+++ ++||||||+||++   +.++.+||+|||++.......  ...+|+.|+|||++.+
T Consensus       103 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~  181 (304)
T 2jam_A          103 YTEKDASLVIQQVLSAVKYLHENG-IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQ  181 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccChHHhcc
Confidence            467889999999999999999999 9999999999999   778899999999987654332  2357999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..++.++|||||||++|+|++|..||.........    ..+....  .........+..+.+||.+||..||++|||+.
T Consensus       182 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~  257 (304)
T 2jam_A          182 KPYSKAVDCWSIGVITYILLCGYPPFYEETESKLF----EKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCE  257 (304)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH----HHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHH----HHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            89999999999999999999999988664322211    1111111  11223345678899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      ++++|..
T Consensus       258 ~~l~h~~  264 (304)
T 2jam_A          258 KALSHPW  264 (304)
T ss_dssp             HHHTSHH
T ss_pred             HHhcCcc
Confidence            9998754

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.96  E-value=9e-30  Score=222.57  Aligned_cols=155  Identities=17%  Similarity=0.258  Sum_probs=121.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEc-CCCCeEEecccCcccCCCC--CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFD-KDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..++.|+.||+.||.|||+++ +++||||||+||+++ .++.+||+|||++......  ....+|+.|+|||++. +
T Consensus       126 ~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~-~  204 (290)
T 1t4h_A          126 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYE-E  204 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGG-T
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCcCcCCHHHHh-c
Confidence            467889999999999999999986 599999999999998 7899999999999765543  2346899999999886 4


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|||||||++|+|++|+.||.........   .............+...++.+.+||.+||..||.+|||+.+++
T Consensus       205 ~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell  281 (290)
T 1t4h_A          205 KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQI---YRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL  281 (290)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHH---HHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHH---HHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence            6899999999999999999999988653221111   1111111111122333457899999999999999999999999


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      +|.
T Consensus       282 ~h~  284 (290)
T 1t4h_A          282 NHA  284 (290)
T ss_dssp             TSG
T ss_pred             hCc
Confidence            873

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.96  E-value=1.4e-29  Score=237.06  Aligned_cols=155  Identities=18%  Similarity=0.134  Sum_probs=123.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc---CCCCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD---KDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~---~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..|+.||+.||.|||++| |+||||||+|||++   .++.+||+|||+++.....   ....||+.|+|||++.
T Consensus       118 ~~~~~~~~i~~qi~~al~~lH~~~-ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  196 (486)
T 3mwu_A          118 FSEHDAARIIKQVFSGITYMHKHN-IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLR  196 (486)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhC
Confidence            467889999999999999999999 99999999999995   4567999999999865543   3457899999999997


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC--CCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG--HFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      + .++.++|||||||++|+|++|..||.........    ..+.......  +.....++++.+||.+||..||.+|||+
T Consensus       197 ~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~  271 (486)
T 3mwu_A          197 G-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDIL----KRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITA  271 (486)
T ss_dssp             S-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             C-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH----HHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            5 5899999999999999999999998765332211    1111111111  1123567889999999999999999999


Q ss_pred             HHHHHHHHh
Q 019475          153 KSLVISLMS  161 (340)
Q Consensus       153 ~e~l~~l~~  161 (340)
                      .++++|.+-
T Consensus       272 ~~~l~hp~~  280 (486)
T 3mwu_A          272 TQCLEHPWI  280 (486)
T ss_dssp             HHHHHCHHH
T ss_pred             HHHhcCHhh
Confidence            999998654

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.96  E-value=1.7e-29  Score=225.35  Aligned_cols=153  Identities=18%  Similarity=0.230  Sum_probs=126.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+||+++.++.+||+|||++......    ....+|+.|+|||++.+.
T Consensus       138 l~~~~~~~i~~qi~~aL~~LH~~~-ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  216 (335)
T 2owb_A          138 LTEPEARYYLRQIVLGCQYLHRNR-VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKK  216 (335)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccC
Confidence            578899999999999999999999 999999999999999999999999999865422    334689999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++|||||||++|+|++|+.||.........    ..+...  ....+...+..+.+||.+||..||++|||+.+++
T Consensus       217 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell  290 (335)
T 2owb_A          217 GHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETY----LRIKKN--EYSIPKHINPVAASLIQKMLQTDPTARPTINELL  290 (335)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH----HHHHHT--CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGG
T ss_pred             CCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHH----HHHhcC--CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            8999999999999999999999988664322211    111111  1223455677899999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      +|..
T Consensus       291 ~~~~  294 (335)
T 2owb_A          291 NDEF  294 (335)
T ss_dssp             GSHH
T ss_pred             cCcc
Confidence            8754

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.96  E-value=6.1e-30  Score=231.00  Aligned_cols=154  Identities=9%  Similarity=0.071  Sum_probs=125.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-----------CCCeEEecccCcccCC---C---CCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-----------DGNPRLSSFGLMKNSR---D---GKSYST   63 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-----------~~~~kl~Dfg~~~~~~---~---~~~~~~   63 (340)
                      +++.+++.|+.||+.||.|||+++ ||||||||+|||++.           ++.+||+|||+++...   .   .....|
T Consensus       169 l~~~~~~~i~~qi~~~L~~lH~~~-ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~g  247 (365)
T 3e7e_A          169 MPQGLVISFAMRMLYMIEQVHDCE-IIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCE  247 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-eecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecC
Confidence            578899999999999999999999 999999999999998           8999999999996532   1   134568


Q ss_pred             CCccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           64 NLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        64 ~~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      |+.|+|||++.+..++.++|||||||++|||++|+.||.........       ....+. ..  ..++.+.+++..||.
T Consensus       248 t~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~-------~~~~~~-~~--~~~~~~~~~~~~~l~  317 (365)
T 3e7e_A          248 TSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECK-------PEGLFR-RL--PHLDMWNEFFHVMLN  317 (365)
T ss_dssp             TTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEE-------ECSCCT-TC--SSHHHHHHHHHHHHC
T ss_pred             CCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCcee-------echhcc-cc--CcHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999888554211100       111111 11  236778999999999


Q ss_pred             cCCCCC-CCHHHHHHHHHhhhhh
Q 019475          144 SEARER-PNAKSLVISLMSLQKE  165 (340)
Q Consensus       144 ~~p~~R-ps~~e~l~~l~~~~~~  165 (340)
                      .+|.+| |++.++.+.|+.....
T Consensus       318 ~~p~~r~~~~~~l~~~l~~~l~~  340 (365)
T 3e7e_A          318 IPDCHHLPSLDLLRQKLKKVFQQ  340 (365)
T ss_dssp             CCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHH
Confidence            999999 6788888888877665

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=225.62  Aligned_cols=154  Identities=13%  Similarity=0.197  Sum_probs=117.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~--   74 (340)
                      +++..++.++.||+.||.|||++| ++||||||+||+++.++.+||+|||++......    ....+++.|+|||++.  
T Consensus       126 ~~~~~~~~i~~qi~~~l~~lH~~~-ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  204 (326)
T 2x7f_A          126 LKEEWIAYICREILRGLSHLHQHK-VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACD  204 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSGGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCcHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhccc
Confidence            467788999999999999999999 999999999999999999999999998765432    3456899999999987  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                         +..++.++|||||||++|+|++|..||........    ...+.........+...+..+.+||.+||..||.+|||
T Consensus       205 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps  280 (326)
T 2x7f_A          205 ENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRA----LFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPA  280 (326)
T ss_dssp             ------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH----HHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCC
T ss_pred             cccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHH----HHHhhcCccccCCccccCHHHHHHHHHHhccChhhCCC
Confidence               55688999999999999999999988865422111    11111111122223456788999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|.
T Consensus       281 ~~~ll~hp  288 (326)
T 2x7f_A          281 TEQLMKHP  288 (326)
T ss_dssp             HHHHHTSH
T ss_pred             HHHHhhCh
Confidence            99999874

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.96  E-value=1.4e-29  Score=219.61  Aligned_cols=154  Identities=17%  Similarity=0.169  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC------CCCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD------GKSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||.+.....      .....+++.|+|||++.
T Consensus       102 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  180 (276)
T 2yex_A          102 MPEPDAQRFFHQLMAGVVYLHGIG-ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLK  180 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHh
Confidence            467889999999999999999999 99999999999999999999999999875432      23456889999999998


Q ss_pred             cCCC-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRV-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..+ +.++||||||+++|+|++|..||.........   .................+..+.+||.+||..||.+|||+.
T Consensus       181 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  257 (276)
T 2yex_A          181 RREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE---YSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIP  257 (276)
T ss_dssp             CSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHH---HHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             cCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHH---HHHhhhcccccCchhhcCHHHHHHHHHHCCCCchhCCCHH
Confidence            7665 77899999999999999999988654221111   1111111111112235677899999999999999999999


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      ++++|
T Consensus       258 ~il~~  262 (276)
T 2yex_A          258 DIKKD  262 (276)
T ss_dssp             HHTTC
T ss_pred             HHhcC
Confidence            99876

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.96  E-value=4.6e-30  Score=234.27  Aligned_cols=165  Identities=10%  Similarity=0.106  Sum_probs=129.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE----cCCCCeEEecccCcccCCCC---CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF----DKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~----~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~   73 (340)
                      +++.+++.|+.||+.||.|||+++ |+||||||+|||+    +.++.+||+|||+++.....   ....||+.|+|||++
T Consensus       109 l~~~~~~~i~~qi~~aL~~LH~~~-ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~  187 (396)
T 4eut_A          109 LPESEFLIVLRDVVGGMNHLRENG-IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMY  187 (396)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccCHHHh
Confidence            578899999999999999999999 9999999999999    77778999999999876543   345689999999998


Q ss_pred             cc--------CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-----------------------c
Q 019475           74 RT--------GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-----------------------L  122 (340)
Q Consensus        74 ~~--------~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~  122 (340)
                      .+        ..++.++|||||||++|||++|+.||...............+....                       .
T Consensus       188 ~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  267 (396)
T 4eut_A          188 ERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPV  267 (396)
T ss_dssp             HHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCT
T ss_pred             hccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCc
Confidence            65        4678899999999999999999988854221111111111111110                       0


Q ss_pred             cCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          123 EGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       123 ~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                      ....+...+..+.+++.+||..||++|||+.++++.+..+....
T Consensus       268 ~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~~  311 (396)
T 4eut_A          268 SCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRM  311 (396)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTCE
T ss_pred             ccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhce
Confidence            11233567888999999999999999999999999998876654

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.96  E-value=9.1e-30  Score=224.98  Aligned_cols=156  Identities=20%  Similarity=0.311  Sum_probs=121.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++ ++.+||+|||++......      ....+++.|+|||++.
T Consensus       124 ~~~~~~~~i~~qi~~aL~~LH~~~-ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  201 (313)
T 3cek_A          124 IDPWERKSYWKNMLEAVHTIHQHG-IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIK  201 (313)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEEE-TTEEEECCCSSSCC--------------CCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceecCCCcccEEEE-CCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHh
Confidence            467889999999999999999999 99999999999996 489999999999865433      2346799999999987


Q ss_pred             c-----------CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcc
Q 019475           75 T-----------GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ  143 (340)
Q Consensus        75 ~-----------~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  143 (340)
                      +           ..++.++|||||||++|+|++|..||.......   ...............+...+..+.++|.+||.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  278 (313)
T 3cek_A          202 DMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI---SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLK  278 (313)
T ss_dssp             TCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH---HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTC
T ss_pred             hcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHH---HHHHHHHhcccccCCcccchHHHHHHHHHHcc
Confidence            5           467889999999999999999999886532211   12223333333334455567889999999999


Q ss_pred             cCCCCCCCHHHHHHHHHh
Q 019475          144 SEARERPNAKSLVISLMS  161 (340)
Q Consensus       144 ~~p~~Rps~~e~l~~l~~  161 (340)
                      .||.+|||+.++++|.+-
T Consensus       279 ~dp~~Rps~~ell~h~~~  296 (313)
T 3cek_A          279 RDPKQRISIPELLAHPYV  296 (313)
T ss_dssp             SSTTTSCCHHHHHTSHHH
T ss_pred             CCcccCcCHHHHhcCccc
Confidence            999999999999988653

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.96  E-value=3.9e-30  Score=229.17  Aligned_cols=159  Identities=14%  Similarity=0.296  Sum_probs=119.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++..+..|+.||+.||.|||++| ++||||||+||+++.++.+||+|||+++.....    ....+|+.|+|||++.+.
T Consensus       121 ~~~~~~~~~~~qi~~~l~~LH~~~-ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  199 (331)
T 4aaa_A          121 LDYQVVQKYLFQIINGIGFCHSHN-IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGD  199 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCC
Confidence            477899999999999999999999 999999999999999999999999999765432    345689999999999875


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhh----------Hhh------h----ccccCC-----CCchh
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL----------LLM------D----SALEGH-----FSNDE  130 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~----------~~~------~----~~~~~~-----~~~~~  130 (340)
                       .++.++|||||||++|+|++|+.||..............          ...      .    +.....     ..+..
T Consensus       200 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (331)
T 4aaa_A          200 VKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKL  279 (331)
T ss_dssp             TTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTS
T ss_pred             CCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccch
Confidence             689999999999999999999998876532211110000          000      0    000000     01245


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          131 GTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       131 ~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ++.+.+||.+||..||.+|||+.++++|.+
T Consensus       280 ~~~l~~li~~~L~~dP~~Rpt~~ell~hp~  309 (331)
T 4aaa_A          280 SEVVIDLAKKCLHIDPDKRPFCAELLHHDF  309 (331)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCGGGGGGSHH
T ss_pred             hHHHHHHHHHHhccCcccCCCHHHHhcCch
Confidence            678999999999999999999999998753

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.96  E-value=2.8e-29  Score=219.84  Aligned_cols=154  Identities=18%  Similarity=0.238  Sum_probs=127.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......    ....+|+.|+|||++.+.
T Consensus       112 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  190 (294)
T 2rku_A          112 LTEPEARYYLRQIVLGCQYLHRNR-VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKK  190 (294)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccC
Confidence            578899999999999999999999 999999999999999999999999999865422    334688999999999988


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      .++.++||||||+++|+|++|..||........    ...+...  ....+...+..+.+++.+||..||++|||+.+++
T Consensus       191 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll  264 (294)
T 2rku_A          191 GHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET----YLRIKKN--EYSIPKHINPVAASLIQKMLQTDPTARPTINELL  264 (294)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH----HHHHHTT--CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGG
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHhhc--cCCCccccCHHHHHHHHHHcccChhhCcCHHHHh
Confidence            899999999999999999999998866432211    1111111  1233456678899999999999999999999999


Q ss_pred             HHHHh
Q 019475          157 ISLMS  161 (340)
Q Consensus       157 ~~l~~  161 (340)
                      +|..-
T Consensus       265 ~~~~~  269 (294)
T 2rku_A          265 NDEFF  269 (294)
T ss_dssp             GSHHH
T ss_pred             hChhe
Confidence            87543

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.96  E-value=1.5e-29  Score=221.62  Aligned_cols=153  Identities=14%  Similarity=0.255  Sum_probs=122.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-CCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-DGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++..+..++.||+.||.|||+++ ++||||||+||+++. ++.+||+|||++......    ....+++.|+|||++.+.
T Consensus       120 ~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  198 (295)
T 2clq_A          120 NEQTIGFYTKQILEGLKYLHDNQ-IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKG  198 (295)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHG
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCC-EEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCC
Confidence            46778889999999999999999 999999999999987 899999999999865432    345689999999999765


Q ss_pred             C--CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           77 R--VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        77 ~--~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      .  ++.++||||||+++|+|++|..||.........   .............+...+..+.+||.+||..||++|||+.+
T Consensus       199 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~  275 (295)
T 2clq_A          199 PRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAA---MFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACAND  275 (295)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHH---HHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHH---HHhhccccccccccccCCHHHHHHHHHHccCChhhCCCHHH
Confidence            4  788999999999999999999888643221111   11111112233455667789999999999999999999999


Q ss_pred             HHHH
Q 019475          155 LVIS  158 (340)
Q Consensus       155 ~l~~  158 (340)
                      +++|
T Consensus       276 ll~~  279 (295)
T 2clq_A          276 LLVD  279 (295)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            9876

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.96  E-value=5.2e-30  Score=231.15  Aligned_cols=158  Identities=13%  Similarity=0.162  Sum_probs=116.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccccc-C
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT-G   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-~   76 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+||+++.++.+||+|||+++.....   ....+|+.|+|||++.+ .
T Consensus       131 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  209 (362)
T 3pg1_A          131 ISPQHIQYFMYHILLGLHVLHEAG-VVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFK  209 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCc-CEecCCChHHEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCC
Confidence            478899999999999999999999 999999999999999999999999999754432   34467899999999887 6


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh-------------------hHhhhccccC-------CCCchh
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-------------------LLLMDSALEG-------HFSNDE  130 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~-------~~~~~~  130 (340)
                      .++.++|||||||++|+|++|+.||.............                   ..........       ...+..
T Consensus       210 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (362)
T 3pg1_A          210 GFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTA  289 (362)
T ss_dssp             TCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTS
T ss_pred             CCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCC
Confidence            78999999999999999999999987643221111100                   0001010000       012234


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          131 GTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       131 ~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ++.+.+||.+||+.||.+|||+.++++|.
T Consensus       290 ~~~~~~li~~~L~~dP~~Rpt~~ell~hp  318 (362)
T 3pg1_A          290 DPVALDLIAKMLEFNPQRRISTEQALRHP  318 (362)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred             CHHHHHHHHHHhcCChhhCCCHHHHHcCc
Confidence            57799999999999999999999999873

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.96  E-value=6e-30  Score=226.92  Aligned_cols=146  Identities=21%  Similarity=0.377  Sum_probs=122.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc-CCCCeEEecccCcccCCCC--CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD-KDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.||+.||.|||+++ |+||||||+|||++ .++.+||+|||+++.....  ....+|+.|+|||++.+..
T Consensus       146 l~~~~~~~i~~qi~~~L~~LH~~~-ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  224 (320)
T 3a99_A          146 LQEELARSFFWQVLEAVRHCHNCG-VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHR  224 (320)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCCCCccCCChHHhccCC
Confidence            467889999999999999999999 99999999999999 7889999999999876543  3456899999999998776


Q ss_pred             C-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 V-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      + +.++|||||||++|+|++|+.||.....          ....  ....+...++.+.+||.+||..||.+|||+.+++
T Consensus       225 ~~~~~~Di~slG~il~el~~g~~pf~~~~~----------~~~~--~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll  292 (320)
T 3a99_A          225 YHGRSAAVWSLGILLYDMVCGDIPFEHDEE----------IIRG--QVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQ  292 (320)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHSSCSCCSHHH----------HHHC--CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCccchHHhHHHHHHHHHHCCCCCCChhh----------hhcc--cccccccCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence            5 6789999999999999999988865321          1111  1123445677899999999999999999999999


Q ss_pred             HHH
Q 019475          157 ISL  159 (340)
Q Consensus       157 ~~l  159 (340)
                      ++.
T Consensus       293 ~hp  295 (320)
T 3a99_A          293 NHP  295 (320)
T ss_dssp             TSG
T ss_pred             cCH
Confidence            874

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.96  E-value=2.5e-29  Score=222.19  Aligned_cols=155  Identities=15%  Similarity=0.201  Sum_probs=125.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.+++.++.||+.||.|||++| ++|+||||+||+++.++.+||+|||++......    ....+++.|+|||++.+.
T Consensus       122 ~~~~~~~~i~~~i~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  200 (314)
T 3com_A          122 LTEDEIATILQSTLKGLEYLHFMR-KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI  200 (314)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-CcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCC
Confidence            477899999999999999999999 999999999999999999999999999765432    344678999999999998


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++||||||+++|+|++|..||........    ....... ......+...+..+.+||.+||..||.+|||+.++
T Consensus       201 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~l  276 (314)
T 3com_A          201 GYNCVADIWSLGITAIEMAEGKPPYADIHPMRA----IFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQL  276 (314)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH----HHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCCChHHH----HHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence            999999999999999999999988865322111    0111111 11111234456789999999999999999999999


Q ss_pred             HHHHH
Q 019475          156 VISLM  160 (340)
Q Consensus       156 l~~l~  160 (340)
                      ++|..
T Consensus       277 l~~~~  281 (314)
T 3com_A          277 LQHPF  281 (314)
T ss_dssp             TTSHH
T ss_pred             HhCHH
Confidence            98743

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.96  E-value=9.7e-30  Score=221.47  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC----CeEEecccCcccCCCC---CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG----NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~   73 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++    .+||+|||++......   ....+++.|+|||++
T Consensus       105 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  183 (283)
T 3bhy_A          105 LTEDEATQFLKQILDGVHYLHSKR-IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIV  183 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCccCccee
Confidence            578899999999999999999999 99999999999999877    8999999999876543   334688999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+..++.++||||||+++|+|++|..||.........    ..+....  .........+..+.+|+.+||..||++|||
T Consensus       184 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  259 (283)
T 3bhy_A          184 NYEPLGLEADMWSIGVITYILLSGASPFLGETKQETL----TNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMT  259 (283)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH----HHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCC
T ss_pred             cCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHH----HHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcC
Confidence            9889999999999999999999999988764322111    1111100  000111234677999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|.
T Consensus       260 ~~~~l~h~  267 (283)
T 3bhy_A          260 IAQSLEHS  267 (283)
T ss_dssp             HHHHHHCH
T ss_pred             HHHHHhCH
Confidence            99999864

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.96  E-value=7.7e-30  Score=238.83  Aligned_cols=155  Identities=18%  Similarity=0.140  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEE---cCCCCeEEecccCcccCCCCC---CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF---DKDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~---~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~   74 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||+   +.++.+||+|||+++......   ...||+.|+|||++.
T Consensus       123 ~~~~~~~~i~~qi~~~l~~lH~~~-ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  201 (484)
T 3nyv_A          123 FSEVDAARIIRQVLSGITYMHKNK-IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLH  201 (484)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccCceeec
Confidence            467889999999999999999999 9999999999999   567899999999998765543   346899999999987


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC--CCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG--HFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      + .++.++|||||||++|+|++|..||........    ...+.......  +.....++.+.+||.+||..+|.+|||+
T Consensus       202 ~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~  276 (484)
T 3nyv_A          202 G-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDI----LKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISA  276 (484)
T ss_dssp             T-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             C-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHH----HHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCH
Confidence            5 689999999999999999999999876532221    11111111111  1123567889999999999999999999


Q ss_pred             HHHHHHHHh
Q 019475          153 KSLVISLMS  161 (340)
Q Consensus       153 ~e~l~~l~~  161 (340)
                      .++++|.+-
T Consensus       277 ~e~l~h~~~  285 (484)
T 3nyv_A          277 RDALDHEWI  285 (484)
T ss_dssp             HHHHTSHHH
T ss_pred             HHHhhChhh
Confidence            999998654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.96  E-value=1.7e-29  Score=232.11  Aligned_cols=154  Identities=16%  Similarity=0.185  Sum_probs=115.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC---CeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG---NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||++.++   .+||+|||+++.....   ....||+.|+|||++.
T Consensus       236 ~~~~~~~~i~~qi~~~l~~LH~~~-ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~  314 (419)
T 3i6u_A          236 LKEATCKLYFYQMLLAVQYLHENG-IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLV  314 (419)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------CTTCCTTTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ccccCCChHhEEEecCCCcceEEEeecccceecCCCccccccCCCCCccCceeee
Confidence            578899999999999999999999 99999999999997544   5999999999876543   3457899999999986


Q ss_pred             c---CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC---CCchhHHHHHHHHHHhcccCCCC
Q 019475           75 T---GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH---FSNDEGTELVRLASRCLQSEARE  148 (340)
Q Consensus        75 ~---~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~cl~~~p~~  148 (340)
                      +   ..++.++|||||||++|+|++|..||......    ......+.......   .....++.+.+||.+||+.||.+
T Consensus       315 ~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  390 (419)
T 3i6u_A          315 SVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ----VSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKA  390 (419)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSS----CCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTT
T ss_pred             cCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcch----HHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhH
Confidence            4   56788999999999999999999998653211    11111111111111   11234678999999999999999


Q ss_pred             CCCHHHHHHHH
Q 019475          149 RPNAKSLVISL  159 (340)
Q Consensus       149 Rps~~e~l~~l  159 (340)
                      |||+.++++|.
T Consensus       391 Rps~~e~l~hp  401 (419)
T 3i6u_A          391 RFTTEEALRHP  401 (419)
T ss_dssp             SCCHHHHHHSG
T ss_pred             CcCHHHHhCCc
Confidence            99999999874

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.96  E-value=4.2e-30  Score=227.36  Aligned_cols=156  Identities=19%  Similarity=0.204  Sum_probs=117.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC---eEEecccCcccCCCC-----------CCcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN---PRLSSFGLMKNSRDG-----------KSYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~---~kl~Dfg~~~~~~~~-----------~~~~~~~~   66 (340)
                      +++.++..++.||+.||.|||+++ |+||||||+|||++.++.   +||+|||++......           ....||+.
T Consensus       108 ~~~~~~~~i~~qi~~~l~~lH~~~-ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~  186 (316)
T 2ac3_A          108 FNELEASVVVQDVASALDFLHNKG-IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAE  186 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcC
Confidence            467889999999999999999999 999999999999998776   999999998754321           13358999


Q ss_pred             cCCcccccc-----CCCCCccchhhHHHHHHHHHhCCCCCCcchhHH-----------hhhhhhhHhhhccccCCCC---
Q 019475           67 FTPPEYMRT-----GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDL-----------IRSKNFLLLMDSALEGHFS---  127 (340)
Q Consensus        67 y~aPE~~~~-----~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~---  127 (340)
                      |+|||++.+     ..++.++|||||||++|+|++|+.||.......           ........+.....  .++   
T Consensus       187 y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~  264 (316)
T 2ac3_A          187 YMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKY--EFPDKD  264 (316)
T ss_dssp             GCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCC--CCCHHH
T ss_pred             ccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCc--ccCchh
Confidence            999999975     457899999999999999999999986532100           00001111111111  122   


Q ss_pred             -chhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          128 -NDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       128 -~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                       ...+..+.+||.+||..||.+|||+.++++|.
T Consensus       265 ~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp  297 (316)
T 2ac3_A          265 WAHISCAAKDLISKLLVRDAKQRLSAAQVLQHP  297 (316)
T ss_dssp             HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHST
T ss_pred             cccCCHHHHHHHHHHhhCChhhCCCHHHHhcCh
Confidence             23567899999999999999999999999874

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.96  E-value=2.2e-29  Score=218.36  Aligned_cols=153  Identities=19%  Similarity=0.258  Sum_probs=118.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.||+.||.|||+++ ++|+||||+||+++.++.+||+|||++......   ....+++.|+|||++.+..
T Consensus       108 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  186 (276)
T 2h6d_A          108 VEEMEARRLFQQILSAVDYCHRHM-VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRL  186 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHC-SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------------CCTGGGTTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CccCCCChhhEEECCCCCEEEeecccccccCCCcceecccCCccccCHHHHcCCC
Confidence            467889999999999999999999 999999999999999999999999998876543   2346789999999998776


Q ss_pred             C-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 V-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      + +.++||||||+++|+|++|..||.........     ..+... ....+...+..+.++|.+||..||.+|||+.+++
T Consensus       187 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l  260 (276)
T 2h6d_A          187 YAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLF-----KKIRGG-VFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIR  260 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH-----HHHHHC-CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHH-----HHhhcC-cccCchhcCHHHHHHHHHHccCChhhCCCHHHHH
Confidence            5 68999999999999999999888664322211     111111 1123455677899999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      +|..
T Consensus       261 ~h~~  264 (276)
T 2h6d_A          261 EHEW  264 (276)
T ss_dssp             HSHH
T ss_pred             hChh
Confidence            9744

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.96  E-value=8.1e-30  Score=224.05  Aligned_cols=157  Identities=20%  Similarity=0.305  Sum_probs=119.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---------CCcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---------KSYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---------~~~~~~~~y~aPE   71 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......         ....+|+.|+|||
T Consensus       118 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  196 (303)
T 2vwi_A          118 LDESTIATILREVLEGLEYLHKNG-QIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPE  196 (303)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-CCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHH
Confidence            467899999999999999999999 999999999999999999999999998755432         2346789999999


Q ss_pred             cccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhh----hccccCCCCchhHHHHHHHHHHhcccCC
Q 019475           72 YMRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM----DSALEGHFSNDEGTELVRLASRCLQSEA  146 (340)
Q Consensus        72 ~~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~li~~cl~~~p  146 (340)
                      ++.+ ..++.++|||||||++|+|++|..||.................    ............+..+.+||.+||..||
T Consensus       197 ~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp  276 (303)
T 2vwi_A          197 VMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDP  276 (303)
T ss_dssp             HHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSG
T ss_pred             HhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCCh
Confidence            9876 5689999999999999999999998865422111100000000    0000112233456789999999999999


Q ss_pred             CCCCCHHHHHHH
Q 019475          147 RERPNAKSLVIS  158 (340)
Q Consensus       147 ~~Rps~~e~l~~  158 (340)
                      .+|||+.++++|
T Consensus       277 ~~Rps~~~ll~h  288 (303)
T 2vwi_A          277 EKRPTAAELLRH  288 (303)
T ss_dssp             GGSCCHHHHHTS
T ss_pred             hhCcCHHHHhhC
Confidence            999999999986

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.96  E-value=1.4e-29  Score=233.60  Aligned_cols=152  Identities=20%  Similarity=0.232  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-------------CCeEEecccCcccCCCCC--------Cccc
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-------------GNPRLSSFGLMKNSRDGK--------SYST   63 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-------------~~~kl~Dfg~~~~~~~~~--------~~~~   63 (340)
                      .++.|+.||+.||.|||+++ |+||||||+|||++.+             +.+||+|||+++......        ...|
T Consensus       116 ~~~~i~~qi~~aL~~LH~~~-ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~g  194 (434)
T 2rio_A          116 NPISLLRQIASGVAHLHSLK-IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSG  194 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------
T ss_pred             hHHHHHHHHHHHHHHHHHCC-ccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCC
Confidence            45789999999999999999 9999999999999754             479999999998765432        3468


Q ss_pred             CCccCCcccccc-------CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhh-ccccCCCCchhHHHH
Q 019475           64 NLAFTPPEYMRT-------GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMD-SALEGHFSNDEGTEL  134 (340)
Q Consensus        64 ~~~y~aPE~~~~-------~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  134 (340)
                      |+.|+|||++.+       ..++.++|||||||++|||++ |..||........  ........ .......+...+.++
T Consensus       195 t~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~  272 (434)
T 2rio_A          195 TSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES--NIIRGIFSLDEMKCLHDRSLIAEA  272 (434)
T ss_dssp             CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHH--HHHHTCCCCCCCTTCCCHHHHHHH
T ss_pred             CCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHH--HHhcCCCCcccccccccccchHHH
Confidence            999999999976       568899999999999999999 8888755322211  00111100 011111233567889


Q ss_pred             HHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          135 VRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       135 ~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      .+||.+||..||.+|||+.++++|.
T Consensus       273 ~~li~~~L~~dP~~Rps~~eil~hp  297 (434)
T 2rio_A          273 TDLISQMIDHDPLKRPTAMKVLRHP  297 (434)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred             HHHHHHHhhCChhhCCCHHHHHhCC
Confidence            9999999999999999999999864

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.96  E-value=3.7e-29  Score=234.63  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=123.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC---CCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD---GNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..|+.||+.||.|||++| |+||||||+|||++..   +.+||+|||++......   ....||+.|+|||++.
T Consensus       133 ~~~~~~~~i~~qi~~~l~~lH~~~-ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~  211 (494)
T 3lij_A          133 FNEVDAAVIIKQVLSGVTYLHKHN-IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLR  211 (494)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-ceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHc
Confidence            467889999999999999999999 9999999999999764   55999999999865543   3457899999999986


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc--CCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE--GHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                       ..++.++|||||||++|+|++|..||.......+.    ..+......  .......++.+.+||.+||+.||.+|||+
T Consensus       212 -~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~  286 (494)
T 3lij_A          212 -KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEIL----RKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISA  286 (494)
T ss_dssp             -TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             -ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHH----HHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccH
Confidence             56899999999999999999999998765432221    111111111  11113457889999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          153 KSLVISLM  160 (340)
Q Consensus       153 ~e~l~~l~  160 (340)
                      .++++|.+
T Consensus       287 ~e~l~hp~  294 (494)
T 3lij_A          287 QQALEHPW  294 (494)
T ss_dssp             HHHHTCHH
T ss_pred             HHHhcCcc
Confidence            99998754

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.96  E-value=3.4e-29  Score=221.62  Aligned_cols=156  Identities=19%  Similarity=0.292  Sum_probs=115.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~--   74 (340)
                      +++..++.++.||+.||.|||++ + ++||||||+||+++.++.+||+|||++......   ....+++.|+|||++.  
T Consensus       121 ~~~~~~~~~~~~i~~~l~~lH~~~~-i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  199 (318)
T 2dyl_A          121 IPERILGKMTVAIVKALYYLKEKHG-VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPP  199 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCGGGEEECTTSCEEECCCTTC--------------CCTTCCHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhCC-EEeCCCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCccccChhhcccc
Confidence            46788999999999999999995 8 999999999999999999999999998765433   2346899999999995  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc-CCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE-GHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                         +..++.++|||||||++|+|++|+.||........   ........... .......+..+.+||.+||..||.+||
T Consensus       200 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  276 (318)
T 2dyl_A          200 DPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFE---VLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRP  276 (318)
T ss_dssp             ------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHH---HHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSC
T ss_pred             cccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHH---HHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCc
Confidence               45688899999999999999999988865321111   11111111111 111224578899999999999999999


Q ss_pred             CHHHHHHHHH
Q 019475          151 NAKSLVISLM  160 (340)
Q Consensus       151 s~~e~l~~l~  160 (340)
                      |+.++++|..
T Consensus       277 s~~~ll~h~~  286 (318)
T 2dyl_A          277 KYNKLLEHSF  286 (318)
T ss_dssp             CHHHHTTSHH
T ss_pred             CHHHHhhCHH
Confidence            9999998754

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.96  E-value=5.1e-29  Score=218.53  Aligned_cols=153  Identities=19%  Similarity=0.225  Sum_probs=123.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccc---
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR---   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~---   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......   ....+++.|+|||++.   
T Consensus       121 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  199 (298)
T 1phk_A          121 LSEKETRKIMRALLEVICALHKLN-IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSM  199 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-cccCCCCcceEEEcCCCcEEEecccchhhcCCCcccccccCCccccCHHHhcccc
Confidence            477899999999999999999999 999999999999999999999999999876543   3346789999999985   


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc--CCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE--GHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                         ...++.++||||||+++|+|++|..||.........    ..+......  .......+..+.+||.+||..||.+|
T Consensus       200 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  275 (298)
T 1phk_A          200 NDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLML----RMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKR  275 (298)
T ss_dssp             CTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGS
T ss_pred             ccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHH----HHHhcCCcccCcccccccCHHHHHHHHHHccCCcccC
Confidence               446788999999999999999999988664322211    111111111  11123567889999999999999999


Q ss_pred             CCHHHHHHH
Q 019475          150 PNAKSLVIS  158 (340)
Q Consensus       150 ps~~e~l~~  158 (340)
                      ||+.++++|
T Consensus       276 ps~~~ll~h  284 (298)
T 1phk_A          276 YTAEEALAH  284 (298)
T ss_dssp             CCHHHHTTS
T ss_pred             CCHHHHHhC
Confidence            999999876

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.96  E-value=7.6e-29  Score=217.66  Aligned_cols=152  Identities=18%  Similarity=0.292  Sum_probs=114.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------------------CCccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------------------KSYST   63 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------------------~~~~~   63 (340)
                      ++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||++......                  ....+
T Consensus       114 ~~~~~~~i~~qi~~~l~~LH~~~-i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (303)
T 1zy4_A          114 QRDEYWRLFRQILEALSYIHSQG-IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIG  192 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTSCEEECCCCCCSCTTC------------------------
T ss_pred             chHHHHHHHHHHHHHHHHHHhCC-eecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCC
Confidence            56788899999999999999999 999999999999999999999999998765421                  23457


Q ss_pred             CCccCCccccccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhc
Q 019475           64 NLAFTPPEYMRTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCL  142 (340)
Q Consensus        64 ~~~y~aPE~~~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  142 (340)
                      ++.|+|||++.+. .++.++|||||||++|+|++   ||....... .................+...+..+.+||.+||
T Consensus       193 ~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  268 (303)
T 1zy4_A          193 TAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERV-NILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLI  268 (303)
T ss_dssp             -CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHH-HHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHT
T ss_pred             cccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHH-HHHHhccccccccCccccccchHHHHHHHHHHH
Confidence            8999999999864 68999999999999999998   343221111 100111111112233345566778999999999


Q ss_pred             ccCCCCCCCHHHHHHH
Q 019475          143 QSEARERPNAKSLVIS  158 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~  158 (340)
                      ..||.+|||+.++++|
T Consensus       269 ~~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          269 DHDPNKRPGARTLLNS  284 (303)
T ss_dssp             CSSGGGSCCHHHHHHS
T ss_pred             hcCcccCcCHHHHhCC
Confidence            9999999999999987

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.96  E-value=3.9e-29  Score=235.05  Aligned_cols=155  Identities=15%  Similarity=0.126  Sum_probs=124.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC---CeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG---NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||++.++   .+||+|||++......   ....||+.|+|||++.
T Consensus       143 ~~~~~~~~i~~qi~~~l~~lH~~~-ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  221 (504)
T 3q5i_A          143 FDECDAANIMKQILSGICYLHKHN-IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK  221 (504)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhc
Confidence            578899999999999999999999 99999999999999776   6999999999876543   3457899999999987


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC--CCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH--FSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                       +.++.++|||||||++|+|++|..||.......+.    ..+........  .....++++.+||.+||..||.+|||+
T Consensus       222 -~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~  296 (504)
T 3q5i_A          222 -KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDII----KKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTA  296 (504)
T ss_dssp             -TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             -cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHH----HHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCH
Confidence             56899999999999999999999998765332221    11111111100  012456789999999999999999999


Q ss_pred             HHHHHHHHh
Q 019475          153 KSLVISLMS  161 (340)
Q Consensus       153 ~e~l~~l~~  161 (340)
                      .++++|.+-
T Consensus       297 ~e~l~h~~~  305 (504)
T 3q5i_A          297 EEALNSRWI  305 (504)
T ss_dssp             HHHHTSHHH
T ss_pred             HHHhcCHhh
Confidence            999988654

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.96  E-value=2.2e-29  Score=221.25  Aligned_cols=153  Identities=18%  Similarity=0.227  Sum_probs=119.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccC----CCCCCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS----RDGKSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~----~~~~~~~~~~~y~aPE~~~--   74 (340)
                      +++.+++.++.||+.||.|||++| ++||||||+||+++.++.+||+|||++...    .......+|+.|+|||++.  
T Consensus       114 ~~~~~~~~~~~~i~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  192 (302)
T 2j7t_A          114 LTEPQIQVVCRQMLEALNFLHSKR-IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCE  192 (302)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-cccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeeccc
Confidence            577899999999999999999999 999999999999999999999999987532    1234457899999999983  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc-cCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL-EGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                         +..++.++||||||+++|+|++|..||........    ......... ....+...+..+.++|.+||..||.+||
T Consensus       193 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  268 (302)
T 2j7t_A          193 TMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV----LLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRP  268 (302)
T ss_dssp             HTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH----HHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTSC
T ss_pred             cCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHH----HHHHhccCCcccCCccccCHHHHHHHHHHcccChhhCC
Confidence               56788999999999999999999988865432211    111111111 1122445677899999999999999999


Q ss_pred             CHHHHHHH
Q 019475          151 NAKSLVIS  158 (340)
Q Consensus       151 s~~e~l~~  158 (340)
                      |+.++++|
T Consensus       269 s~~~ll~h  276 (302)
T 2j7t_A          269 SAAQLLEH  276 (302)
T ss_dssp             CHHHHTTS
T ss_pred             CHHHHhcC
Confidence            99999876

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.96  E-value=7.3e-29  Score=222.36  Aligned_cols=154  Identities=18%  Similarity=0.205  Sum_probs=122.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccC-
Q 019475            1 MKWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTG-   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~-   76 (340)
                      +++.+++.++.||+.||.|||+ +| ++||||||+||+++.++.+||+|||.+......  ....++..|+|||++.+. 
T Consensus       148 ~~~~~~~~i~~qi~~~l~~lH~~~~-i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  226 (348)
T 2pml_X          148 IPIQVIKCIIKSVLNSFSYIHNEKN-ICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNES  226 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTSC-EECCCCCGGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhccCC-EeecCCChHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCC
Confidence            5788999999999999999999 88 999999999999999999999999999865433  445789999999999877 


Q ss_pred             CCCC-ccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCC-----------------CCchhHHHHHHHH
Q 019475           77 RVTP-ESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH-----------------FSNDEGTELVRLA  138 (340)
Q Consensus        77 ~~~~-~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li  138 (340)
                      .++. ++|||||||++|+|++|..||......   ......+........                 .....+..+.+||
T Consensus       227 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  303 (348)
T 2pml_X          227 SYNGAKVDIWSLGICLYVMFYNVVPFSLKISL---VELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFL  303 (348)
T ss_dssp             CEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS---HHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH---HHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHH
Confidence            5666 999999999999999999988654220   001111111111000                 0145678899999


Q ss_pred             HHhcccCCCCCCCHHHHHHH
Q 019475          139 SRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       139 ~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+||..||.+|||+.++++|
T Consensus       304 ~~~L~~dP~~Rps~~e~l~h  323 (348)
T 2pml_X          304 KLFLRKNPAERITSEDALKH  323 (348)
T ss_dssp             HHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHccCChhhCCCHHHHhcC
Confidence            99999999999999999986

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.95  E-value=4.9e-29  Score=221.23  Aligned_cols=154  Identities=16%  Similarity=0.199  Sum_probs=120.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC---eEEecccCcccCCCCC---CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN---PRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~---~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~   74 (340)
                      +++.++..++.||+.||.|||+++ ++||||||+||+++.++.   +||+|||+++......   ...||+.|+|||++.
T Consensus       111 ~~~~~~~~~~~qi~~~l~~lH~~~-ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~  189 (322)
T 2ycf_A          111 LKEATCKLYFYQMLLAVQYLHENG-IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLV  189 (322)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCCcCccCchhhc
Confidence            467889999999999999999999 999999999999987664   9999999998765442   346799999999974


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC---CCCchhHHHHHHHHHHhcccCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG---HFSNDEGTELVRLASRCLQSEARE  148 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~~p~~  148 (340)
                         +..++.++|||||||++|+|++|..||.......    .....+......   ......+..+.+||.+||..||.+
T Consensus       190 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~  265 (322)
T 2ycf_A          190 SVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV----SLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKA  265 (322)
T ss_dssp             HTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS----CHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTT
T ss_pred             cCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH----HHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhh
Confidence               4568899999999999999999999886532110    111111111100   011234678999999999999999


Q ss_pred             CCCHHHHHHHH
Q 019475          149 RPNAKSLVISL  159 (340)
Q Consensus       149 Rps~~e~l~~l  159 (340)
                      |||+.++++|.
T Consensus       266 Rps~~~~l~h~  276 (322)
T 2ycf_A          266 RFTTEEALRHP  276 (322)
T ss_dssp             SCCHHHHHTSG
T ss_pred             CCCHHHHhhCc
Confidence            99999999763

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.95  E-value=3.7e-29  Score=221.44  Aligned_cols=159  Identities=14%  Similarity=0.155  Sum_probs=120.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc-CCCCeEEecccCcccCCCC-------CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD-KDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~   72 (340)
                      +++..+..++.||+.||.|||++| ++||||||+||+++ .++.+||+|||+++.....       ....++..|+|||.
T Consensus       117 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  195 (320)
T 2i6l_A          117 LLEEHARLFMYQLLRGLKYIHSAN-VLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRL  195 (320)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCC-EecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHH
Confidence            467889999999999999999999 99999999999997 5678999999999865422       23356889999998


Q ss_pred             ccc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhH-----------h-------hhccccC------CCC
Q 019475           73 MRT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL-----------L-------MDSALEG------HFS  127 (340)
Q Consensus        73 ~~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~-----------~-------~~~~~~~------~~~  127 (340)
                      +.+ ..++.++|||||||++|+|++|+.||...............           .       .......      ...
T Consensus       196 ~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (320)
T 2i6l_A          196 LLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLL  275 (320)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHS
T ss_pred             hcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhc
Confidence            865 67899999999999999999999988764321111000000           0       0000000      011


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ...+.++.+||.+||..||.+|||+.++++|..
T Consensus       276 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~  308 (320)
T 2i6l_A          276 PGISREAVDFLEQILTFSPMDRLTAEEALSHPY  308 (320)
T ss_dssp             TTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHH
T ss_pred             chhhHHHHHHHHHHcCCCccccCCHHHHhCCcc
Confidence            245678999999999999999999999998754

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.95  E-value=6.4e-29  Score=219.41  Aligned_cols=147  Identities=21%  Similarity=0.402  Sum_probs=122.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc-CCCCeEEecccCcccCCCC--CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD-KDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++ .++.+||+|||++......  ....++..|+|||++.+..
T Consensus       136 ~~~~~~~~~~~qi~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  214 (312)
T 2iwi_A          136 LGEGPSRCFFGQVVAAIQHCHSRG-VVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQ  214 (312)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHT-EECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCC
Confidence            578899999999999999999999 99999999999999 8899999999998876543  3456899999999998766


Q ss_pred             CC-CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VT-PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~-~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      +. .++|||||||++|+|++|+.||.....          ....  ...++...+..+.+||.+||..+|++|||+.+++
T Consensus       215 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~----------~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l  282 (312)
T 2iwi_A          215 YHALPATVWSLGILLYDMVCGDIPFERDQE----------ILEA--ELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEIL  282 (312)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHSSCSCCSHHH----------HHHT--CCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred             CCCccchHHHHHHHHHHHHHCCCCCCChHH----------Hhhh--ccCCcccCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence            64 589999999999999999988865311          1111  1223455678899999999999999999999999


Q ss_pred             HHHH
Q 019475          157 ISLM  160 (340)
Q Consensus       157 ~~l~  160 (340)
                      +|..
T Consensus       283 ~~~~  286 (312)
T 2iwi_A          283 LDPW  286 (312)
T ss_dssp             HSTT
T ss_pred             cChh
Confidence            8743

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.95  E-value=1e-28  Score=227.41  Aligned_cols=150  Identities=19%  Similarity=0.242  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-----CCCeEEecccCcccCCCC-------CCcccCCccCCcc
Q 019475            4 AMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-----DGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPE   71 (340)
Q Consensus         4 ~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-----~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE   71 (340)
                      .+++.|+.||+.||.|||+++ |+||||||+|||++.     ...+||+|||+++.....       ....||+.|+|||
T Consensus       118 ~~~~~i~~qi~~aL~~LH~~~-ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE  196 (432)
T 3p23_A          118 LEPITLLQQTTSGLAHLHSLN-IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPE  196 (432)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT-CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGG
T ss_pred             hhHHHHHHHHHHHHHHHHHCc-CEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChh
Confidence            456789999999999999999 999999999999953     235789999999865432       2346899999999


Q ss_pred             ccc---cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhc-ccc-CCCCchhHHHHHHHHHHhcccC
Q 019475           72 YMR---TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDS-ALE-GHFSNDEGTELVRLASRCLQSE  145 (340)
Q Consensus        72 ~~~---~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~li~~cl~~~  145 (340)
                      ++.   +..++.++|||||||++|||++ |..||.........     ..... ... .......+..+.+||.+||+.|
T Consensus       197 ~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  271 (432)
T 3p23_A          197 MLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQAN-----ILLGACSLDCLHPEKHEDVIARELIEKMIAMD  271 (432)
T ss_dssp             GTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHH-----HHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSS
T ss_pred             hhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHH-----HHhccCCccccCccccccHHHHHHHHHHHhCC
Confidence            997   4567889999999999999999 77776443221111     11111 111 1122345677899999999999


Q ss_pred             CCCCCCHHHHHHHH
Q 019475          146 ARERPNAKSLVISL  159 (340)
Q Consensus       146 p~~Rps~~e~l~~l  159 (340)
                      |.+|||+.++++|.
T Consensus       272 P~~Rps~~evl~hp  285 (432)
T 3p23_A          272 PQKRPSAKHVLKHP  285 (432)
T ss_dssp             GGGSCCHHHHHTST
T ss_pred             HhhCCCHHHHHhCc
Confidence            99999999999763

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.95  E-value=2.5e-28  Score=213.14  Aligned_cols=154  Identities=16%  Similarity=0.130  Sum_probs=121.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC---CCeEEecccCcccCCCCC---CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD---GNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~---~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~   74 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.+   +.+||+|||++.......   ...+++.|+|||++.
T Consensus       118 ~~~~~~~~i~~qi~~~l~~LH~~~-i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~  196 (287)
T 2wei_A          118 FSEHDAARIIKQVFSGITYMHKHN-IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLR  196 (287)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCcccccChHHhc
Confidence            477899999999999999999999 9999999999999754   479999999988655432   335788999999987


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCC--CchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHF--SNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      + .++.++||||||+++|+|++|..||.........    ..+.........  ....+.++.++|.+||..||.+|||+
T Consensus       197 ~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~  271 (287)
T 2wei_A          197 G-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDIL----KRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITA  271 (287)
T ss_dssp             T-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             C-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHH----HHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCH
Confidence            5 5889999999999999999999988764322211    111111111111  13456789999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          153 KSLVISLM  160 (340)
Q Consensus       153 ~e~l~~l~  160 (340)
                      .++++|..
T Consensus       272 ~ell~hp~  279 (287)
T 2wei_A          272 TQCLEHPW  279 (287)
T ss_dssp             HHHHHSHH
T ss_pred             HHHhcCHH
Confidence            99998743

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.94  E-value=7.2e-28  Score=229.54  Aligned_cols=155  Identities=17%  Similarity=0.197  Sum_probs=118.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC---eEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN---PRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~---~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      +++..++.|+.||+.||.|||++| |+||||||+||+++.++.   +||+|||++......   ....+|+.|+|||++.
T Consensus       118 lse~~i~~I~~QLl~aL~yLHs~g-IVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~  196 (676)
T 3qa8_A          118 LKEGPIRTLLSDISSALRYLHENR-IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLE  196 (676)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHTT-BCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CccCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcccCChHHhc
Confidence            467789999999999999999999 999999999999997765   899999999876543   3457899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh----------hhHhhhc--------cccCCCCchhHHHHHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN----------FLLLMDS--------ALEGHFSNDEGTELVR  136 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~~~~~  136 (340)
                      +..++.++|||||||++|+|++|..||........-...          .......        ..........+..+.+
T Consensus       197 ~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~d  276 (676)
T 3qa8_A          197 QKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLER  276 (676)
T ss_dssp             CSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHH
T ss_pred             cCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHH
Confidence            999999999999999999999999988653211100000          0000000        0011234457899999


Q ss_pred             HHHHhcccCCCCCCCHHHHH
Q 019475          137 LASRCLQSEARERPNAKSLV  156 (340)
Q Consensus       137 li~~cl~~~p~~Rps~~e~l  156 (340)
                      ||.+||..||++|||+.+++
T Consensus       277 LI~~mL~~DP~kRPTa~elL  296 (676)
T 3qa8_A          277 WLQCMLMWHQRQRGTDPQNP  296 (676)
T ss_dssp             HHHHHSCSSCC---CCTTCC
T ss_pred             HHHHHccCCHhhCcCHHHHh
Confidence            99999999999999998854

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.94  E-value=4.2e-27  Score=206.54  Aligned_cols=140  Identities=16%  Similarity=0.176  Sum_probs=106.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC---CCCeEEecccCcccCCCCCCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~---~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.+++.|+.||+.||.|||+++ ++||||||+||+++.   ++.+||+|||++....                  +..
T Consensus       114 ~~~~~~~~i~~qi~~~l~~lH~~~-i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~------------------~~~  174 (299)
T 3m2w_A          114 FTEREASEIMKSIGEAIQYLHSIN-IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT------------------GEK  174 (299)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEESSSSTTCCEEECCCTTCEECT------------------TCG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCCCCHHHEEEecCCCCCcEEEeccccccccc------------------ccc
Confidence            467899999999999999999999 999999999999998   7889999999976432                  345


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCC----chhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFS----NDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++|||||||++|+|++|..||...................  ....+    ...+.++.+||.+||..||.+|||+.
T Consensus       175 ~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~  252 (299)
T 3m2w_A          175 YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMG--QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT  252 (299)
T ss_dssp             GGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTT--CCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhc--cccCCchhcccCCHHHHHHHHHHcccChhhCCCHH
Confidence            7889999999999999999999886542221111100000000  01111    24567899999999999999999999


Q ss_pred             HHHHHHHh
Q 019475          154 SLVISLMS  161 (340)
Q Consensus       154 e~l~~l~~  161 (340)
                      ++++|.+-
T Consensus       253 e~l~hp~~  260 (299)
T 3m2w_A          253 EFMNHPWI  260 (299)
T ss_dssp             HHHTSHHH
T ss_pred             HHhcChhh
Confidence            99988553

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.92  E-value=3e-26  Score=204.45  Aligned_cols=147  Identities=12%  Similarity=0.015  Sum_probs=113.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHH-hCCCceecccCCCCeEEcCCC--------------------CeEEecccCcccCCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCS-SKGRALYHDLNAYRILFDKDG--------------------NPRLSSFGLMKNSRDGK   59 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH-~~~~iih~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~   59 (340)
                      +++.++..|+.||+.||.||| +++ |+||||||+|||++.++                    .+||+|||+++..... 
T Consensus       158 ~~~~~~~~i~~qi~~aL~~lH~~~~-ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-  235 (336)
T 2vuw_A          158 SSLATAKSILHQLTASLAVAEASLR-FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-  235 (336)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHC-CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCC-EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-
Confidence            467899999999999999999 899 99999999999999887                    8999999999876543 


Q ss_pred             CcccCCccCCccccccCCCCCccchhhHHHH-HHHHHhCCCCCCcchhHHhhhhhhhHhhhc-ccc----CCCCchhHHH
Q 019475           60 SYSTNLAFTPPEYMRTGRVTPESVVYSFGTM-LLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALE----GHFSNDEGTE  133 (340)
Q Consensus        60 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~-~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~  133 (340)
                      ...||+.|+|||++.+.. +.++||||||++ .+++++|..||.......   .....+... ...    ...+...+++
T Consensus       236 ~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~  311 (336)
T 2vuw_A          236 IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLH---YLTDKMLKQMTFKTKCNTPAMKQIKRK  311 (336)
T ss_dssp             EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHH---HHHHHHHHTCCCSSCCCSHHHHHHHHH
T ss_pred             cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhh---HHHHhhhhhhccCcccchhhhhhcCHH
Confidence            457899999999998766 889999998777 778888987764421100   011111111 111    1112357889


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHH-HH
Q 019475          134 LVRLASRCLQSEARERPNAKSLV-IS  158 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l-~~  158 (340)
                      +.+||.+||+.|     |+.+++ +|
T Consensus       312 ~~dli~~~L~~d-----sa~e~l~~H  332 (336)
T 2vuw_A          312 IQEFHRTMLNFS-----SATDLLCQH  332 (336)
T ss_dssp             HHHHHHHGGGSS-----SHHHHHHHC
T ss_pred             HHHHHHHHhccC-----CHHHHHhcC
Confidence            999999999976     999998 76

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.91  E-value=3.7e-25  Score=192.84  Aligned_cols=138  Identities=17%  Similarity=0.136  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccccCCCCCcc
Q 019475            3 WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVTPES   82 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~   82 (340)
                      ..+.++|+.||+.||.|||++| |+||||||+|||++.+|.+||+++|.                ++       .++.++
T Consensus       128 ~~~~~~i~~ql~~aL~~lH~~g-ivH~Dikp~NIll~~~g~~kl~~~~~----------------~~-------~~~~~~  183 (286)
T 3uqc_A          128 PVGAIRAMQSLAAAADAAHRAG-VALSIDHPSRVRVSIDGDVVLAYPAT----------------MP-------DANPQD  183 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-CCCCCCSGGGEEEETTSCEEECSCCC----------------CT-------TCCHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHCC-CccCCCCcccEEEcCCCCEEEEeccc----------------cC-------CCCchh
Confidence            4568899999999999999999 99999999999999999999985543                33       368899


Q ss_pred             chhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc--CCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475           83 VVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE--GHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus        83 Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      |||||||++|+|++|+.||........-. ...........  ......+++.+.+||.+||+.||.+| |+.++++.|.
T Consensus       184 Di~slG~il~elltg~~Pf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~  261 (286)
T 3uqc_A          184 DIRGIGASLYALLVNRWPLPEAGVRSGLA-PAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQ  261 (286)
T ss_dssp             HHHHHHHHHHHHHHSEECSCCCSBCCCSE-ECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCCcchhhH-HHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHH
Confidence            99999999999999999887642210000 00000000000  01123456789999999999999999 9999999999


Q ss_pred             hhhhhc
Q 019475          161 SLQKEA  166 (340)
Q Consensus       161 ~~~~~~  166 (340)
                      .+....
T Consensus       262 ~~~~~~  267 (286)
T 3uqc_A          262 QATAVA  267 (286)
T ss_dssp             HHHC--
T ss_pred             HHhccC
Confidence            876653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.88  E-value=2.1e-22  Score=153.37  Aligned_cols=106  Identities=18%  Similarity=0.282  Sum_probs=102.3

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      +..++.++++|+.+++.|+|++|+..|++||+++|. ++.+|+++|.+|.++|++++|+.+|++|++++|+++.+|+++|
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            456788999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhccccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .++..+|++++|+++|+++++++|+..
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence            999999999999999999999999853

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.87  E-value=3.6e-22  Score=155.35  Aligned_cols=106  Identities=15%  Similarity=0.060  Sum_probs=100.5

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC------------hhHhhhhhHHHHhcCChHHHHHHHHhhhhh
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS------------PTVYARRCLSYLMNDMPQEALGDAMQAQVV  299 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~l  299 (340)
                      ...+..++..|+.+++.|+|++|+..|++||+++|+ +            +.+|+|+|.++.++|+|++|+.+|++||++
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~-~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            456788999999999999999999999999999998 4            239999999999999999999999999999


Q ss_pred             -------CCCchHHH----HHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          300 -------SPDWPTAL----YLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       300 -------~p~~~~a~----~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                             +|++.++|    |++|.+|..+|++++|+.+|++|++++|.+.
T Consensus        87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence                   99999999    9999999999999999999999999999865

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.83  E-value=4.9e-22  Score=188.47  Aligned_cols=89  Identities=13%  Similarity=0.150  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccCCCCCccc
Q 019475            8 RVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTGRVTPESV   83 (340)
Q Consensus         8 ~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~D   83 (340)
                      +|+.||+.||+|+|++| ||||||||+|||++.+|++||+|||+++.....    .+.+||+.|++||++.+ .+..++|
T Consensus       343 ~I~~QIl~AL~ylH~~G-IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g-~~~~~~d  420 (569)
T 4azs_A          343 KILGSLLRSLAALEKQG-FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAE-NKSWNGF  420 (569)
T ss_dssp             HHHHHHHHHHHHHHHTT-CEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHCC-ceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCC-CCCCccc
Confidence            58999999999999999 999999999999999999999999999876543    23468999999999975 4677899


Q ss_pred             hhhHHHHHHHHHhCC
Q 019475           84 VYSFGTMLLDLLSGK   98 (340)
Q Consensus        84 i~slG~~~~el~~g~   98 (340)
                      +||+|++++++.++.
T Consensus       421 ~~s~g~~~~~l~~~~  435 (569)
T 4azs_A          421 WRSAPVHPFNLPQPW  435 (569)
T ss_dssp             --------CCCCTTH
T ss_pred             ccccccchhhhcccc
Confidence            999999988876654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.83  E-value=3.9e-20  Score=145.03  Aligned_cols=106  Identities=9%  Similarity=-0.028  Sum_probs=102.0

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .+.....+...|..+++.|+|++|+..|+++++++|+ ++.+|+++|.+|..+|+|++|+..|++|++++|+++.+|+++
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            4566778999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.+|..+|++++|+..|+++++++|..
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            999999999999999999999999864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.82  E-value=4.4e-20  Score=140.62  Aligned_cols=104  Identities=16%  Similarity=0.141  Sum_probs=97.7

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCch-------
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-------  304 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-------  304 (340)
                      ...+..+.+.|+.+++.|+|++|+..|++||+++|+ ++.+|+|+|.+|..+|+|++|+.+|++|++++|++.       
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            345678899999999999999999999999999999 999999999999999999999999999999998764       


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          305 TALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       305 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .+|+++|.++..+|++++|++.|+++|+++|+
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            58999999999999999999999999998775

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.80  E-value=1.5e-19  Score=143.59  Aligned_cols=105  Identities=20%  Similarity=0.189  Sum_probs=100.2

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC------------------CCCCChhHhhhhhHHHHhcCChHHHHHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG------------------GTMVSPTVYARRCLSYLMNDMPQEALGDAM  294 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  294 (340)
                      ..+..++.+|+.+++.|+|++|+..|++||++                  +|. +..+|+|+|.||.++|+|++|+.+|+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-NIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT-HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            45778999999999999999999999999998                  777 78999999999999999999999999


Q ss_pred             hhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          295 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       295 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +|++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+..
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            99999999999999999999999999999999999999999853

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.5e-19  Score=134.00  Aligned_cols=101  Identities=21%  Similarity=0.267  Sum_probs=98.4

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+...|..+++.|+|++|+..|+++++++|+ ++.+|+++|.+|.++|+|++|+.+|+++++++|+++.+|+++|.+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4678899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcccc
Q 019475          314 LFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      +..+|++++|+..|+++++++|
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p  103 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDA  103 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999993

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.77  E-value=2.2e-18  Score=134.84  Aligned_cols=106  Identities=11%  Similarity=0.049  Sum_probs=101.2

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ......+...|..++..|+|++|+..|+++++++|+ ++.+|+++|.+|..+|+|++|+..|+++++++|+++.+++++|
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   96 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA   96 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            455677889999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhccccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .+|..+|++++|++.|+++++++|..+
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            999999999999999999999998743

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.76  E-value=3.7e-18  Score=135.66  Aligned_cols=105  Identities=27%  Similarity=0.365  Sum_probs=101.1

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      ..+..+...|..+++.|+|++|+..|+++++++|+ ++.+|+++|.+|..+|+|++|+.+|+++++++|+++.+|+++|.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45678899999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhhccccccc
Q 019475          313 CLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +|..+|++++|+..|+++++++|+..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCch
Confidence            99999999999999999999999854

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.76  E-value=5.4e-18  Score=131.51  Aligned_cols=106  Identities=12%  Similarity=0.098  Sum_probs=100.9

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ......+...|..+++.|+|++|+..|++++..+|+ ++.+|+++|.+|..+|+|++|+..|+++++++|+++.+++.+|
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   93 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            345667889999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhccccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .+|..+|++++|+..|+++++++|..+
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999998643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=2.4e-18  Score=134.94  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=99.7

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .......+...|..+++.|+|++|+..|+++|+++|+ ++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++
T Consensus        27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4455667788999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHH-HHHhhcccccc
Q 019475          311 AACLFSLGMENDARET-LKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~-~~~al~l~~~~  337 (340)
                      |.+|..+|++++|++. +++|++++|+.
T Consensus       106 a~~~~~~~~~~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A          106 AELLCKNDVTDGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             HHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence            9999999999988876 59999999974

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.75  E-value=3.7e-18  Score=128.71  Aligned_cols=102  Identities=12%  Similarity=0.030  Sum_probs=93.4

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ..+...|..+++.|++++|+..|+++++.+|+ ++.+|+++|.++..+|++++|+..+++|++++|+++.+++.+|.++.
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhhccccccc
Q 019475          316 SLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .+|++++|+..|+++++++|...
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCC
Confidence            99999999999999999999754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.71  E-value=7.6e-17  Score=123.59  Aligned_cols=102  Identities=22%  Similarity=0.406  Sum_probs=99.0

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+...|..++..|+|++|+..|+++++++|+ ++.+|+++|.+|..+|++++|+..++++++++|+++.+++.+|.+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            3567889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +..+|++++|+..|+++++++|+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChh
Confidence            99999999999999999999987

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.70  E-value=4.4e-17  Score=134.86  Aligned_cols=103  Identities=19%  Similarity=0.090  Sum_probs=96.2

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhh----------------hhHHHHhcCChHHHHHHHHhhh
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYAR----------------RCLSYLMNDMPQEALGDAMQAQ  297 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~al  297 (340)
                      .+..+..+|..++..|+|++|+..|+++++++|+ ++.+|++                +|.+|.++|++++|+..|++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3567888999999999999999999999999999 9999999                9999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          298 VVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       298 ~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +++|+++.+++.+|.++..+|++++|+..|+++++++|+.
T Consensus        82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999974

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.69  E-value=2.8e-16  Score=128.73  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=102.1

Q ss_pred             hHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh----------------hHhhhhhHHHHhcCChHHHHHH
Q 019475          229 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----------------TVYARRCLSYLMNDMPQEALGD  292 (340)
Q Consensus       229 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~----------------~~~~~~~~~~~~~~~~~~A~~~  292 (340)
                      ......+..+...|..++..|+|++|+..|++++++.|. ++                .+|+++|.+|..+|+|++|+.+
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  110 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH  110 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            345566788999999999999999999999999999998 77                8999999999999999999999


Q ss_pred             HHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          293 AMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       293 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |+++++++|+++.+++++|.++..+|++++|++.|+++++++|..
T Consensus       111 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999999999999999999999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.69  E-value=1.4e-17  Score=129.11  Aligned_cols=90  Identities=13%  Similarity=0.064  Sum_probs=84.9

Q ss_pred             hcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCCh----------HHHHHHHHhhhhhCCCchHHHHHHHHHHHh
Q 019475          247 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMP----------QEALGDAMQAQVVSPDWPTALYLQAACLFS  316 (340)
Q Consensus       247 ~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  316 (340)
                      +.+.|++|+..|+++++++|+ ++.+|+|+|.++..++++          ++|+..|++||+++|++..+|+++|.+|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            456789999999999999999 999999999999999876          599999999999999999999999999998


Q ss_pred             cC-----------ChHHHHHHHHHhhcccccc
Q 019475          317 LG-----------MENDARETLKDGTNLEAKK  337 (340)
Q Consensus       317 ~~-----------~~~~A~~~~~~al~l~~~~  337 (340)
                      +|           ++++|+++|++|+++||+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            85           8999999999999999974

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.68  E-value=2.1e-16  Score=146.46  Aligned_cols=107  Identities=12%  Similarity=0.177  Sum_probs=99.6

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC---------------hhHhhhhhHHHHhcCChHHHHHHHHh
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---------------PTVYARRCLSYLMNDMPQEALGDAMQ  295 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~  295 (340)
                      ....+..+..+|+.+++.|+|++|+..|++||+++|. +               ..+|+|+|.||.++|+|++|+.+|++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4566788999999999999999999999999999999 7               69999999999999999999999999


Q ss_pred             hhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          296 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       296 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      |++++|+++.+|+++|.+|..+|+|++|+.+|++|++++|+..
T Consensus       343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999999753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.67  E-value=3.5e-16  Score=139.20  Aligned_cols=106  Identities=11%  Similarity=0.105  Sum_probs=101.6

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC---------------hhHhhhhhHHHHhcCChHHHHHHHHh
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---------------PTVYARRCLSYLMNDMPQEALGDAMQ  295 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~  295 (340)
                      ....+..+...|+.+++.|+|++|+..|++|++++|+ +               ..+|+|+|.+|.++|+|++|+.+|++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5566788999999999999999999999999999999 7               69999999999999999999999999


Q ss_pred             hhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          296 AQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       296 al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |++++|+++.+|+++|.+|..+|++++|+.+|++|++++|+.
T Consensus       222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999999999999999999974

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.67  E-value=4.5e-17  Score=127.60  Aligned_cols=97  Identities=11%  Similarity=-0.080  Sum_probs=90.4

Q ss_pred             hHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCCh
Q 019475          241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGME  320 (340)
Q Consensus       241 ~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~  320 (340)
                      .|..+..+|++++|+..|.+++..+|+ ++..++++|.+|.++|+|++|+..|+++++++|+++.+|+.+|.+|..+|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            467778899999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccc
Q 019475          321 NDARETLKDGTNLEAKKN  338 (340)
Q Consensus       321 ~~A~~~~~~al~l~~~~~  338 (340)
                      ++|+..|+++++++|+..
T Consensus        82 ~~A~~~~~~al~~~p~~~   99 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQK   99 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCH
Confidence            999999999999999753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.67  E-value=2.6e-16  Score=152.85  Aligned_cols=106  Identities=13%  Similarity=0.023  Sum_probs=98.4

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      ....+..+...|..+.+.|++++|+..|++||+++|+ ++.+|+|+|.+|..+|++++|++.|++|++++|+++.+|+++
T Consensus        39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~L  117 (723)
T 4gyw_A           39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL  117 (723)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3445678899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.+|..+|++++|++.|++|++++|+.
T Consensus       118 g~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A          118 ASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999874

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.66  E-value=9.6e-16  Score=116.28  Aligned_cols=103  Identities=21%  Similarity=0.290  Sum_probs=98.9

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..++..|+|++|+..|+++++.+|. +..+++++|.+|..+|++++|+..++++++++|++..+++.+|.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            567888999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ..+|++++|++.|+++++++|...
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCch
Confidence            999999999999999999998753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.66  E-value=4.1e-16  Score=135.18  Aligned_cols=102  Identities=22%  Similarity=0.411  Sum_probs=99.0

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +..+...|+.+++.|+|++|+..|+++++.+|+ ++.+|+++|.+|.++|+|++|+.++++|++++|+++.+++++|.+|
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            457888999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|++++|+..|+++++++|..
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999975

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.66  E-value=7.5e-16  Score=114.10  Aligned_cols=103  Identities=24%  Similarity=0.390  Sum_probs=99.1

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+...|..++..|++++|+..|++++..+|. ++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            3567888999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+|++++|++.|+++++++|..
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.65  E-value=3.5e-16  Score=152.00  Aligned_cols=102  Identities=12%  Similarity=0.043  Sum_probs=67.6

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+...|+.+.+.|++++|+..|++||+++|+ ++.+|+|+|.+|.++|++++|+..|++|++++|+++.+|+++|.+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3455666666666666666666666666666666 666666666666666666666666666666666666666666666


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      |..+|++++|++.|++|++++|+
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~  109 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPA  109 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Confidence            66666666666666666666665

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=5e-16  Score=129.33  Aligned_cols=103  Identities=14%  Similarity=0.209  Sum_probs=99.1

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..+++.|++++|+..|+++++++|+ ++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3456788999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhc-----------CChHHHHHHHHHhhcccccc
Q 019475          314 LFSL-----------GMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~-----------~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+           |++++|+..|+++++++|+.
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~  117 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY  117 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc
Confidence            9999           99999999999999999974

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.64  E-value=1.1e-15  Score=123.42  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=97.8

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..+...++++.|+..+.++++++|. +..++..+|.+|..+|++++|+..|+++++++|+++.+|+++|.+|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  151 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY  151 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            345667788899999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ..+|++++|++.|++|++++|+.+
T Consensus       152 ~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          152 EGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhCCccCH
Confidence            999999999999999999999853

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.6e-15  Score=117.33  Aligned_cols=102  Identities=24%  Similarity=0.241  Sum_probs=97.8

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC---hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      +..+...|..++..|+|++|+..|+++++.+|+ +   ..+++++|.+|..+|+|++|+..++++++++|+++.+++.+|
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            456788899999999999999999999999998 8   899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhcccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .++..+|++++|+..|+++++++|+.
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p~~  132 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSLEPKN  132 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999999999874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.64  E-value=5.2e-16  Score=138.17  Aligned_cols=108  Identities=15%  Similarity=0.185  Sum_probs=97.3

Q ss_pred             HHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh-----------------hHhhhhhHHHHhcCChHHHHHH
Q 019475          230 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-----------------TVYARRCLSYLMNDMPQEALGD  292 (340)
Q Consensus       230 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~  292 (340)
                      .....+..++.+|+.+++.|+|++|+..|++|+++.|+ +.                 .+|+|+|.||.++|+|++|+.+
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD-DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH-HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            35566788999999999999999999999999999998 76                 4999999999999999999999


Q ss_pred             HHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          293 AMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       293 ~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      |++|++++|++..+|+++|.+|..+|++++|+.+|+++++++|+..
T Consensus       253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~  298 (338)
T 2if4_A          253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK  298 (338)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            9999999999999999999999999999999999999999999743

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.5e-15  Score=125.64  Aligned_cols=96  Identities=9%  Similarity=0.016  Sum_probs=90.0

Q ss_pred             hHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhc---
Q 019475          241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL---  317 (340)
Q Consensus       241 ~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~---  317 (340)
                      .|..+++.|++++|+..|+++++++|+ ++.+++++|.+|..+|++++|+..|+++++++|+++.+++++|.+|+.+   
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            899999999999999999999999999 9999999999999999999999999999999999999998888876443   


Q ss_pred             --------------------------------CChHHHHHHHHHhhcccccc
Q 019475          318 --------------------------------GMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       318 --------------------------------~~~~~A~~~~~~al~l~~~~  337 (340)
                                                      |+|++|+..|++|++++|+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                                            46899999999999999973

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.63  E-value=6.8e-16  Score=138.97  Aligned_cols=107  Identities=20%  Similarity=0.212  Sum_probs=101.2

Q ss_pred             HHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhc----------------CCCCCChhHhhhhhHHHHhcCChHHHHHHH
Q 019475          230 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFID----------------GGTMVSPTVYARRCLSYLMNDMPQEALGDA  293 (340)
Q Consensus       230 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~----------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~  293 (340)
                      .....+..+...|+.+++.|+|++|+..|++||+                ++|. +..+|+|+|.+|.++|+|++|+.+|
T Consensus       218 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~g~~~~A~~~~  296 (370)
T 1ihg_A          218 KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-ALSCVLNIGACKLKMSDWQGAVDSC  296 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH-HHHHHHHHHHHHHhccCHHHHHHHH
Confidence            3445577899999999999999999999999998                7888 8999999999999999999999999


Q ss_pred             HhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          294 MQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       294 ~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++|++++|+++.+|+++|.+|..+|++++|+++|++|++++|..
T Consensus       297 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          297 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  340 (370)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.63  E-value=1.5e-15  Score=114.93  Aligned_cols=100  Identities=13%  Similarity=0.063  Sum_probs=95.4

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh---hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc---hHHHHHH
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---PTALYLQ  310 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~  310 (340)
                      .+...|..++..|+|++|+..|+++++.+|+ +.   .+++++|.+|..+|+|++|+..++++++.+|++   +.+++.+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4677899999999999999999999999999 87   799999999999999999999999999999999   8999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.++..+|++++|+..|+++++.+|+.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.63  E-value=2e-16  Score=118.26  Aligned_cols=90  Identities=14%  Similarity=0.057  Sum_probs=82.6

Q ss_pred             hcCCHHHHHHHHHhhhcC---CCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHH
Q 019475          247 RAKDFSTAIDCYTQFIDG---GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDA  323 (340)
Q Consensus       247 ~~g~~~~A~~~~~~ai~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A  323 (340)
                      ..|++++|+..|++++++   +|+ ++.+++++|.+|..+|+|++|+..++++++++|+++.+++++|.++..+|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            468999999999999999   688 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccc
Q 019475          324 RETLKDGTNLEAKK  337 (340)
Q Consensus       324 ~~~~~~al~l~~~~  337 (340)
                      +..|+++++++|..
T Consensus        81 ~~~~~~al~~~p~~   94 (117)
T 3k9i_A           81 VELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCCCc
Confidence            99999999998864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=3.3e-15  Score=117.92  Aligned_cols=106  Identities=25%  Similarity=0.370  Sum_probs=100.6

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      ....+..+...|..++..|+|++|+..|.++++.+|. +..+++++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   87 (166)
T 1a17_A            9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   87 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            3455778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.++..+|++++|+..|+++++++|+.
T Consensus        88 a~~~~~~~~~~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           88 AASNMALGKFRAALRDYETVVKVKPHD  114 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999998864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=4.2e-16  Score=140.74  Aligned_cols=106  Identities=7%  Similarity=-0.047  Sum_probs=98.0

Q ss_pred             HHHHHHhHHHhHhHHhhcCC-HHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKD-FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL  309 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  309 (340)
                      .......+..+|..+...|+ +++|+..|+++|+++|+ ++.+|++||.++..+|++++|+.+|++||+++|++..+|++
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~  205 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH  205 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHH
Confidence            44556788999999999996 99999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          310 QAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       310 ~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +|.++..+|++++|+++|+++|++||+.
T Consensus       206 lg~~~~~~g~~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          206 RQWVIQEFKLWDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999874

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.62  E-value=2.1e-15  Score=110.63  Aligned_cols=101  Identities=14%  Similarity=0.054  Sum_probs=96.6

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC--chHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--WPTALYLQAAC  313 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~  313 (340)
                      ..+...|..++..|++++|+..|+++++.+|. +..+++++|.++..+|++++|+..++++++++|+  +..+++.+|.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            34567888999999999999999999999999 9999999999999999999999999999999999  99999999999


Q ss_pred             HHhc-CChHHHHHHHHHhhcccccc
Q 019475          314 LFSL-GMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~-~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+ |++++|++.|+++++.+|..
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999 99999999999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=1.2e-15  Score=137.76  Aligned_cols=105  Identities=13%  Similarity=-0.056  Sum_probs=100.2

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCC-hHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      ......+...|..+.+.|++++|+..|+++|+++|+ ++.+|++||.++..+|+ +++|+.+|++|++++|++..+|+++
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            345667888999999999999999999999999999 99999999999999997 9999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.++..+|++++|+.+|++||++||+.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            999999999999999999999999974

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.61  E-value=7e-15  Score=110.81  Aligned_cols=105  Identities=19%  Similarity=0.262  Sum_probs=100.3

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ......+...|..++..|++++|+..|+++++.+|+ ++.+++++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            445678889999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhcccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .++..+|++++|+..|+++++++|+.
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            99999999999999999999999864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=2.9e-15  Score=125.25  Aligned_cols=102  Identities=15%  Similarity=0.099  Sum_probs=98.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCC-CCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGT-MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ...+...|..++..|+|++|+..|+++++++| . +..+++++|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            36788999999999999999999999999999 7 899999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+|++++|+..|+++++++|+.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999974

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.59  E-value=2.9e-15  Score=124.65  Aligned_cols=98  Identities=14%  Similarity=0.071  Sum_probs=59.5

Q ss_pred             hHHHhHhHHhhc-----------CCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchH
Q 019475          237 NSKKHGDTAFRA-----------KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT  305 (340)
Q Consensus       237 ~~~~~g~~~~~~-----------g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~  305 (340)
                      .+...|..+.+.           |++++|+..|+++++++|+ ++.+++++|.+|..+|++++|+..|++|++++ +++.
T Consensus        75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~  152 (217)
T 2pl2_A           75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE  152 (217)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH
Confidence            445555555555           6666666666666666665 66666666666666666666666666666666 5566


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +++.+|.+|..+|++++|+..|+++++++|.
T Consensus       153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  183 (217)
T 2pl2_A          153 IRSALAELYLSMGRLDEALAQYAKALEQAPK  183 (217)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            6666666666666666666666666666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.58  E-value=6.4e-15  Score=111.14  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=97.2

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc-------hHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-------PTA  306 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a  306 (340)
                      .+..+...|..++..|++++|+..|.++++.+|. ++.+++++|.+|..+|++++|+..+++++++.|++       ..+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4567888999999999999999999999999999 99999999999999999999999999999999887       999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          307 LYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       307 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ++.+|.++..+|++++|++.|+++++++|+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999874

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.58  E-value=2.2e-16  Score=148.85  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----------CCcccCCccCCccccc
Q 019475            6 RLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         6 ~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~y~aPE~~~   74 (340)
                      ++.|+.||+.||.|||+++ |+||||||+|||++.  .+||+|||+++.....           .+..||+.|+|||++.
T Consensus       433 ~~~i~~qi~~aL~~LH~~g-IiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~  509 (540)
T 3en9_A          433 NLDIAYKIGEIVGKLHKND-VIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWE  509 (540)
T ss_dssp             CTHHHHHHHHHHHHHHHTT-EECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCc-CccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHH
Confidence            3578999999999999999 999999999999998  9999999999987653           2446899999999998


Q ss_pred             c--CCCCCccchhhHHHHHHHHHhCCCCC
Q 019475           75 T--GRVTPESVVYSFGTMLLDLLSGKHIP  101 (340)
Q Consensus        75 ~--~~~~~~~Di~slG~~~~el~~g~~~~  101 (340)
                      +  ..|+..+|+|+..+-..+-+.++.++
T Consensus       510 ~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          510 RFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            6  56788899999998888887776544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.57  E-value=2e-14  Score=120.16  Aligned_cols=101  Identities=17%  Similarity=0.162  Sum_probs=96.8

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCch-------HHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-------TAL  307 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-------~a~  307 (340)
                      ...+...|..++..|+|++|+..|+++++.+|+ +..+|+++|.+|..+|++++|+..++++++++|+++       .+|
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  120 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY  120 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            456677999999999999999999999999999 999999999999999999999999999999999999       779


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          308 YLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       308 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +.+|.++..+|++++|++.|+++++++|+
T Consensus       121 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          121 LKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999987

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.1e-15  Score=112.50  Aligned_cols=96  Identities=15%  Similarity=0.218  Sum_probs=90.5

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc------hHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW------PTAL  307 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~  307 (340)
                      .+..+...|..++..|+|++|+..|+++++++|+ ++.+|+++|.+|..+|+|++|+..++++++++|++      ..++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            3567889999999999999999999999999999 99999999999999999999999999999999999      9999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHh
Q 019475          308 YLQAACLFSLGMENDARETLKDG  330 (340)
Q Consensus       308 ~~~g~~~~~~~~~~~A~~~~~~a  330 (340)
                      +++|.++..+|++++|+..|++.
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHhHhhhHhHHHHh
Confidence            99999999999999998877654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.56  E-value=3.6e-15  Score=138.87  Aligned_cols=105  Identities=26%  Similarity=0.368  Sum_probs=99.8

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      ..+..+...|..+++.|+|++|++.|++|++++|+ ++.+|+++|.+|.++|+|++|+.++++|++++|+++.+++++|.
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34567788899999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhhccccccc
Q 019475          313 CLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +|..+|++++|++.|++|++++|+..
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999998754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.56  E-value=2.3e-14  Score=115.53  Aligned_cols=103  Identities=19%  Similarity=0.153  Sum_probs=69.1

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..+++.|++++|+..+.+++...|+ ++.++.++|.++...++++.|+..+.++++++|++..+++.+|.+
T Consensus        38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~  116 (184)
T 3vtx_A           38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV  116 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            3444555555555555555555555555555555 555566666666666666666666666667777777778888888


Q ss_pred             HHhcCChHHHHHHHHHhhcccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+|++++|++.|+++++++|..
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~p~~  140 (184)
T 3vtx_A          117 YDSMGEHDKAIEAYEKTISIKPGF  140 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhCCchhHHHHHHHHHHhcchh
Confidence            888888888888888888887764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.55  E-value=2.8e-14  Score=117.75  Aligned_cols=102  Identities=18%  Similarity=0.112  Sum_probs=97.0

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCch----------
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP----------  304 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~----------  304 (340)
                      ...+...|..++..|+|++|+..|+++++++|+ ++.+|+++|.+|..+|++++|+..+++++++.|++.          
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            457788999999999999999999999999999 999999999999999999999999999999888877          


Q ss_pred             ------HHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          305 ------TALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       305 ------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                            .+++++|.++..+|++++|+..|+++++++|+.
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                  999999999999999999999999999999864

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.55  E-value=2e-14  Score=115.30  Aligned_cols=104  Identities=17%  Similarity=0.130  Sum_probs=99.0

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHH-HHhcCCh--HHHHHHHHhhhhhCCCchHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLS-YLMNDMP--QEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      ....+...|..++..|++++|+..|+++++++|+ ++.+++++|.+ +...|++  ++|+..++++++++|++..+++.+
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  121 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL  121 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3557888999999999999999999999999999 99999999999 8899999  999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      |.++..+|++++|+..|+++++++|...
T Consensus       122 a~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          122 ASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999999999753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.55  E-value=5.4e-14  Score=104.93  Aligned_cols=102  Identities=16%  Similarity=0.222  Sum_probs=97.5

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..++..|++++|+..|+++++.+|. +..+++++|.++...|++++|+..++++++++|+++.+++.+|.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            456778899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|++++|+..|+++++++|..
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999999874

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.54  E-value=3.1e-15  Score=117.04  Aligned_cols=84  Identities=7%  Similarity=-0.235  Sum_probs=80.2

Q ss_pred             HHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 019475          254 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL  333 (340)
Q Consensus       254 A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  333 (340)
                      +-..|+++++++|+ ++.+++++|.++..+|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+..|++|+++
T Consensus        21 ~~~~l~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           21 SGATLKDINAIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             TSCCTGGGCCSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            34668999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q 019475          334 EAKKN  338 (340)
Q Consensus       334 ~~~~~  338 (340)
                      +|+..
T Consensus       100 ~P~~~  104 (151)
T 3gyz_A          100 GKNDY  104 (151)
T ss_dssp             SSSCC
T ss_pred             CCCCc
Confidence            99854

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.53  E-value=2e-14  Score=106.83  Aligned_cols=85  Identities=15%  Similarity=0.134  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 019475          252 STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGT  331 (340)
Q Consensus       252 ~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al  331 (340)
                      ++|+..|+++++.+|+ ++.+++++|.+|..+|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++
T Consensus         2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4689999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 019475          332 NLEAKK  337 (340)
Q Consensus       332 ~l~~~~  337 (340)
                      +++|..
T Consensus        81 ~~~~~~   86 (115)
T 2kat_A           81 AAAQSR   86 (115)
T ss_dssp             HHHHHH
T ss_pred             Hhcccc
Confidence            998864

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.51  E-value=1.5e-13  Score=113.34  Aligned_cols=100  Identities=14%  Similarity=0.091  Sum_probs=93.3

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+...|..++..|+|++|+..|++++  +|  ++.+++++|.+|..+|++++|+..|+++++++|+++.+++++|.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            35567889999999999999999999996  33  689999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+|++++|++.|+++++++|+.
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999988764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.50  E-value=1.6e-13  Score=117.31  Aligned_cols=105  Identities=11%  Similarity=-0.021  Sum_probs=100.2

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ......+...|..++..|++++|+..|+++++.+|+ ++.+|+++|.+|..+|++++|+..++++++++|+++.+++.+|
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            345677889999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhcccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .++..+|++++|+..|+++++++|+.
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPND  144 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.49  E-value=4.4e-14  Score=106.98  Aligned_cols=77  Identities=16%  Similarity=0.046  Sum_probs=72.3

Q ss_pred             hhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          260 QFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       260 ~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++..++|+ .+.+|.++|.+|++.|+|++|+..|++|++++|+++.+|+++|.+|..+|++++|+.+|++|+++||+.
T Consensus         4 r~a~inP~-~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A            4 RLAYINPE-LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             ---CCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence            55678999 999999999999999999999999999999999999999999999999999999999999999999974

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.49  E-value=1.3e-13  Score=117.74  Aligned_cols=102  Identities=13%  Similarity=0.095  Sum_probs=96.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC---hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC---chHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---WPTALY  308 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~  308 (340)
                      ...+...|..+++.|+|++|+..|+++++..|+ +   +.+++++|.+|..+|+|++|+..|++++++.|+   .+.+++
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            567889999999999999999999999999999 8   899999999999999999999999999999885   467999


Q ss_pred             HHHHHHHh--------cCChHHHHHHHHHhhcccccc
Q 019475          309 LQAACLFS--------LGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       309 ~~g~~~~~--------~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .+|.++..        +|++++|+..|+++++++|+.
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence            99999999        999999999999999999874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.48  E-value=3.2e-14  Score=138.23  Aligned_cols=101  Identities=11%  Similarity=-0.075  Sum_probs=92.4

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+..+|..+++.|+|++|+..|++|++++|+ ++.+|+++|.+|.++|+|++ +..|++|++++|+++.+|+++|.+|
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            446788899999999999999999999999999 99999999999999999999 9999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|++++|+++|++|++++|..
T Consensus       545 ~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          545 SAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             HHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             HHcCCHHHHHHHHHhhcccCccc
Confidence            99999999999999999999873

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=3.2e-13  Score=114.07  Aligned_cols=103  Identities=20%  Similarity=0.260  Sum_probs=98.6

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ......+...|..++..|++++|+..|+++++.+|. ++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  214 (258)
T 3uq3_A          136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA  214 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            345667888999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhcccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      .++..+|++++|+..|+++++++|
T Consensus       215 ~~~~~~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          215 TAQIAVKEYASALETLDAARTKDA  238 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCh
Confidence            999999999999999999999993

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.46  E-value=2.2e-13  Score=121.88  Aligned_cols=102  Identities=17%  Similarity=0.090  Sum_probs=98.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +..+...|..+++.|++++|+..|+++++.+|+ ++.+|+++|.+|..+|++++|+..|+++++++|++..+++.+|.+|
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            456788999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|++++|+..|+++++++|+.
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~  166 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKY  166 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.46  E-value=2.1e-13  Score=109.35  Aligned_cols=105  Identities=12%  Similarity=-0.027  Sum_probs=71.4

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHH-HhcCChHHHHHHHHhhhhhCCCchHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSY-LMNDMPQEALGDAMQAQVVSPDWPTALYL  309 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~l~p~~~~a~~~  309 (340)
                      .+.....+...|..+.+.|++++|+..|+++++.+|  ++.++..++.+. ...++..+|+..++++++++|+++.+++.
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~  113 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE  113 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence            444455666666666666666666666666666655  233333333222 22223334566667777788889999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          310 QAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       310 ~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +|.++..+|++++|+..|+++++++|..
T Consensus       114 la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          114 LAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999998863

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.45  E-value=1.9e-13  Score=98.92  Aligned_cols=73  Identities=18%  Similarity=0.162  Sum_probs=67.2

Q ss_pred             CCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          264 GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       264 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .+|+ ++.+++++|.+|..+|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|++.|+++++++++.
T Consensus         2 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPE-DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            4788 999999999999999999999999999999999999999999999999999999999999999998764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.45  E-value=2.9e-13  Score=113.08  Aligned_cols=103  Identities=11%  Similarity=0.075  Sum_probs=94.8

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh---hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchH---HHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP---TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT---ALY  308 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~  308 (340)
                      ...+..+|..+++.|+|++|+..|+++++..|. ++   .+++++|.+|.++|+|++|+..|+++++++|++..   +++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            456788999999999999999999999999998 54   78999999999999999999999999999999875   899


Q ss_pred             HHHHHHHh------------------cCChHHHHHHHHHhhccccccc
Q 019475          309 LQAACLFS------------------LGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       309 ~~g~~~~~------------------~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .+|.++..                  +|++++|+..|+++++.+|+..
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            99999986                  6799999999999999999754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.45  E-value=1.1e-13  Score=99.75  Aligned_cols=91  Identities=16%  Similarity=0.116  Sum_probs=85.3

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChh-HhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT-VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  316 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  316 (340)
                      ...+|..+++.|+|++|+..|+++++.+|+ ++. +++++|.+|..+|++++|+..|+++++++|++..++++       
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence            457889999999999999999999999999 999 99999999999999999999999999999999999866       


Q ss_pred             cCChHHHHHHHHHhhcccccc
Q 019475          317 LGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       317 ~~~~~~A~~~~~~al~l~~~~  337 (340)
                       +.+.+|+..|+++++.+|..
T Consensus        75 -~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 -KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -HHHHHHHHHHCCTTHHHHCC
T ss_pred             -HHHHHHHHHHHHHhccCccc
Confidence             78899999999999998864

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.45  E-value=3.5e-13  Score=128.26  Aligned_cols=100  Identities=15%  Similarity=0.035  Sum_probs=59.7

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ..+...|..++..|++++|++.|+++++++|+ ++.+++++|.+|..+|++++|+..++++++++|++..+++++|.+|.
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  102 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE  102 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34555555555556666666666666666665 56666666666666666666666666666666666666666666666


Q ss_pred             hcCChHHHHHHHHHhhccccc
Q 019475          316 SLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .+|++++|++.|+++++++|+
T Consensus       103 ~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A          103 DAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT
T ss_pred             HcCCHHHHHHHHHHHHHhCCC
Confidence            666666666666666655554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.44  E-value=4e-13  Score=120.17  Aligned_cols=101  Identities=17%  Similarity=0.184  Sum_probs=97.7

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..+...|++++|+..|+++++.+|+ ++.+|+++|.+|..+|++++|+..|+++++++|+++.+++.+|.++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            456778899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ..+|++++|+..|+++++++|+
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999987

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.44  E-value=4.9e-13  Score=112.10  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=53.2

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ..+...|..++..|++++|+..|+++++.+|. +..+++++|.+|..+|++++|+..++++++++|++..+++.+|.++.
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  136 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV  136 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34444555555555555555555555555555 55555555555555555555555555555555555555555555555


Q ss_pred             hcCChHHHHHHHHHhhcccc
Q 019475          316 SLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~~  335 (340)
                      .+|++++|+..|+++++++|
T Consensus       137 ~~~~~~~A~~~~~~~~~~~~  156 (243)
T 2q7f_A          137 KLEQPKLALPYLQRAVELNE  156 (243)
T ss_dssp             HTSCHHHHHHHHHHHHHHCT
T ss_pred             HhccHHHHHHHHHHHHHhCC
Confidence            55555555555555555544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.43  E-value=8.7e-14  Score=108.48  Aligned_cols=83  Identities=8%  Similarity=-0.048  Sum_probs=79.4

Q ss_pred             HHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccc
Q 019475          255 IDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE  334 (340)
Q Consensus       255 ~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  334 (340)
                      -..|++++.++|+ +..+++++|.++...|+|++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++++++
T Consensus         7 ~~~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            7 GGTIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCSHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3568899999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q 019475          335 AKKN  338 (340)
Q Consensus       335 ~~~~  338 (340)
                      |+..
T Consensus        86 p~~~   89 (148)
T 2vgx_A           86 IXEP   89 (148)
T ss_dssp             TTCT
T ss_pred             CCCc
Confidence            9753

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.43  E-value=9e-13  Score=99.41  Aligned_cols=101  Identities=17%  Similarity=0.226  Sum_probs=95.5

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..++..|++++|+..|++++...|. +..+++++|.++...|++++|+..++++++..|++..+++.+|.++
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  113 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY  113 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            345667788899999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ..+|++++|+..|+++++++|.
T Consensus       114 ~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          114 YKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHccHHHHHHHHHHHHccCCC
Confidence            9999999999999999999875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.43  E-value=6.6e-13  Score=117.62  Aligned_cols=101  Identities=18%  Similarity=0.257  Sum_probs=98.1

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ++..+...|..++..|+|++|+..|+++++.+|+ ++.+++++|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            3567889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcccc
Q 019475          314 LFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      +..+|++++|+..|+++++++|
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHHcCChHHHHHHHHHHHhcCC
Confidence            9999999999999999999998

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.43  E-value=7e-13  Score=115.09  Aligned_cols=102  Identities=10%  Similarity=0.010  Sum_probs=85.7

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHH--------------------
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAM--------------------  294 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~--------------------  294 (340)
                      ...+...|..+.+.|++++|+..|+++++.+|+ ++.+++++|.+|..+|++++|+..++                    
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence            345677788888888888888888888888888 88888888888888888877765554                    


Q ss_pred             --------------hhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          295 --------------QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       295 --------------~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                                    ++++++|+++.+++.+|.+|..+|++++|++.|+++++++|..
T Consensus       196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence                          4467799999999999999999999999999999999999875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.42  E-value=1.3e-12  Score=98.48  Aligned_cols=100  Identities=17%  Similarity=0.236  Sum_probs=95.2

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  316 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  316 (340)
                      .+...|..++..|++++|+..|+++++.+|. +..+++++|.++...|++++|+..+++++++.|++..+++.+|.++..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            4567788999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHhhcccccc
Q 019475          317 LGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       317 ~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +|++++|++.|+++++++|+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRS  102 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hcCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999988763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=1.2e-12  Score=104.55  Aligned_cols=103  Identities=14%  Similarity=0.074  Sum_probs=97.9

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..++..|++++|+..|+++++..|. +..++.++|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus        76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  154 (186)
T 3as5_A           76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY  154 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            456778899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ..+|++++|+..|+++++++|+..
T Consensus       155 ~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          155 EQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCch
Confidence            999999999999999999998743

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.1e-12  Score=122.20  Aligned_cols=103  Identities=21%  Similarity=0.217  Sum_probs=98.4

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ...+..+..+|+.+++.|+|++|+..|+++++.+|+  +.+|+++|.+|..+|++++|+..++++++++|++..+++.+|
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~   80 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc--HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            345788999999999999999999999999999985  899999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .++..+|++++|+..|+++++++|.
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~~~  105 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNGDF  105 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.40  E-value=1.3e-12  Score=116.70  Aligned_cols=102  Identities=15%  Similarity=0.117  Sum_probs=97.8

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +..+...|..++..|++++|+..|+++++.+|. ++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|.++
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  142 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF  142 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            345678899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|++++|+..|+++++++|+.
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPAY  165 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCc
Confidence            99999999999999999999874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.40  E-value=1.3e-12  Score=119.99  Aligned_cols=106  Identities=18%  Similarity=0.258  Sum_probs=100.8

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .+..+..+...|..+++.|+|++|+..|+++++.+|. ++.+++++|.+|..+|++++|+..++++++++|++..+++.+
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  100 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR  100 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            3455778899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.+|..+|++++|+..|+++++++|+.
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.40  E-value=7.4e-13  Score=124.35  Aligned_cols=104  Identities=25%  Similarity=0.289  Sum_probs=94.5

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ...+..+..+|..+++.|+|++|+..|+++++.+|+ ++.+|+++|.+|..+|++++|+..|+++++++|+++.+++.+|
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  100 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            345788999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhcccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .++..+|++++|+..|+ ++.++|..
T Consensus       101 ~~~~~~g~~~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHTCHHHHHHHHH-HHC-----
T ss_pred             HHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence            99999999999999996 88888763

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.40  E-value=2.1e-12  Score=91.02  Aligned_cols=84  Identities=14%  Similarity=0.142  Sum_probs=78.8

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+...|..++..|++++|+..|+++++.+|+ ++.+++++|.+|..+|++++|+..++++++++|++..+++.+|.+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3456788899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q 019475          314 LFSLG  318 (340)
Q Consensus       314 ~~~~~  318 (340)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.40  E-value=3.9e-13  Score=125.07  Aligned_cols=101  Identities=13%  Similarity=0.043  Sum_probs=96.1

Q ss_pred             HhHHHhHhHHhhc---------CCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhc--------CChHHHHHHHHhhhh
Q 019475          236 LNSKKHGDTAFRA---------KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN--------DMPQEALGDAMQAQV  298 (340)
Q Consensus       236 ~~~~~~g~~~~~~---------g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~  298 (340)
                      ..+...|..+...         |++++|+..|++|++++|+ ++.+|+++|.+|..+        |++++|+..|++|++
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~  249 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK  249 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            5677888888888         9999999999999999999 999999999999999        999999999999999


Q ss_pred             hCC---CchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          299 VSP---DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       299 l~p---~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++|   +++.+|+++|.+|..+|++++|++.|++|++++|..
T Consensus       250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999   999999999999999999999999999999999874

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=2.4e-12  Score=102.80  Aligned_cols=103  Identities=12%  Similarity=0.063  Sum_probs=94.0

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..++..|++++|+..|+++++.+|. +..++.++|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  119 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA  119 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence            4556788899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+|++++|+..|+++++++|..
T Consensus       120 ~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          120 LDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHcCcHHHHHHHHHHHHhcCccc
Confidence            999999999999999999988754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.39  E-value=4.9e-13  Score=124.40  Aligned_cols=102  Identities=12%  Similarity=-0.019  Sum_probs=98.0

Q ss_pred             HHHhHHHhHhHHhhcCCH-HHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDF-STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~-~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      .+..+..+|..++..|+| ++|+..|+++++++|+ ++.+|+++|.+|..+|++++|+..|++|++++|+ ..+++++|.
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~  178 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSM  178 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence            456788999999999999 9999999999999999 9999999999999999999999999999999999 799999999


Q ss_pred             HHHhc---------CChHHHHHHHHHhhcccccc
Q 019475          313 CLFSL---------GMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       313 ~~~~~---------~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++..+         |++++|++.|++|++++|+.
T Consensus       179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence            99999         99999999999999999874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.39  E-value=1.5e-12  Score=116.12  Aligned_cols=103  Identities=16%  Similarity=0.216  Sum_probs=98.7

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..++..|++++|+..|+++++++|+ ++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|.+
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  294 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS  294 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3556788899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+|++++|+..|+++++++|+.
T Consensus       295 ~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          295 CINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.2e-12  Score=110.57  Aligned_cols=102  Identities=14%  Similarity=0.124  Sum_probs=96.3

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc-------hH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-------PT  305 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-------~~  305 (340)
                      ..+..+...|..++..|+|++|+..|+++++.+ . ++.+++++|.+|..+|++++|+..++++++++|++       +.
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            356789999999999999999999999999999 7 99999999999999999999999999999999987       79


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +++.+|.++..+|++++|+..|+++++++|.
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  111 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT  111 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence            9999999999999999999999999997654

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.39  E-value=8.8e-14  Score=120.39  Aligned_cols=59  Identities=14%  Similarity=0.076  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccc
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMR   74 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~   74 (340)
                      +...++.||+.||.|||++| |+||||||+|||++ ++.+||+|||+++.         +..+++||++.
T Consensus       194 ~~~~i~~qi~~~l~~lH~~g-iiHrDlkp~NILl~-~~~vkl~DFG~a~~---------~~~~~a~e~l~  252 (282)
T 1zar_A          194 NPDEVLDMILEEVAKFYHRG-IVHGDLSQYNVLVS-EEGIWIIDFPQSVE---------VGEEGWREILE  252 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT-EECSCCSTTSEEEE-TTEEEECCCTTCEE---------TTSTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHCC-CEeCCCCHHHEEEE-CCcEEEEECCCCeE---------CCCCCHHHHHH
Confidence            45679999999999999999 99999999999999 99999999999864         34578888875

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.39  E-value=1.2e-12  Score=111.83  Aligned_cols=103  Identities=5%  Similarity=-0.038  Sum_probs=91.7

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh----hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  308 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  308 (340)
                      .....+...|..++..|++++|+..|+++++ .|. ++    .+|+++|.+|..+|++++|+..++++++++|+++.+++
T Consensus        35 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  112 (272)
T 3u4t_A           35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVN-ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG  112 (272)
T ss_dssp             CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC-chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence            3455788899999999999999999999999 444 43    34899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          309 LQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       309 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .+|.++..+|++++|+..|+++++++|..
T Consensus       113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A          113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            99999999999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=1.1e-12  Score=111.90  Aligned_cols=103  Identities=14%  Similarity=0.059  Sum_probs=95.4

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC--ChhHhhhhhHHHHh--------cCChHHHHHHHHhhhhhCCCch
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--SPTVYARRCLSYLM--------NDMPQEALGDAMQAQVVSPDWP  304 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~--~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~l~p~~~  304 (340)
                      ...+...|..+++.|+|++|+..|+++++..|+.  .+.+++++|.+|..        +|++++|+..|+++++.+|++.
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            5678899999999999999999999999998851  46789999999999        9999999999999999999987


Q ss_pred             HHH-----------------HHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          305 TAL-----------------YLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       305 ~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .+.                 +.+|.+|..+|++++|+..|+++++.+|+.
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            777                 899999999999999999999999998873

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.38  E-value=1.2e-12  Score=99.18  Aligned_cols=70  Identities=10%  Similarity=-0.064  Sum_probs=67.0

Q ss_pred             ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          269 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .+.++.++|.+++++|+|++|+..|++|++++|+++.+|+++|.+|..+|+|++|+++|++|++++|+..
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            5678999999999999999999999999999999999999999999999999999999999999998743

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.38  E-value=1.8e-12  Score=115.07  Aligned_cols=99  Identities=13%  Similarity=0.066  Sum_probs=92.7

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+...|..+++.|+|++|+..|++||+++|+ ++.+|+++|.+|..+|+|++|+.+|++|++++|++..+++.+|.+
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3567889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHH-HHHHHHhhcc
Q 019475          314 LFSLGMENDA-RETLKDGTNL  333 (340)
Q Consensus       314 ~~~~~~~~~A-~~~~~~al~l  333 (340)
                      +..+|++++| ...|++.++.
T Consensus       274 ~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 5577777643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.37  E-value=1.5e-13  Score=110.16  Aligned_cols=99  Identities=10%  Similarity=0.068  Sum_probs=87.9

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH-HHh
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC-LFS  316 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~-~~~  316 (340)
                      +...+..++..|++++|+..|+++++.+|+ ++.+|+++|.+|...|++++|+..|+++++++|+++.+++.+|.+ +..
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~   91 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ   91 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            344456678899999999999999999999 999999999999999999999999999999999999999999999 889


Q ss_pred             cCCh--HHHHHHHHHhhcccccc
Q 019475          317 LGME--NDARETLKDGTNLEAKK  337 (340)
Q Consensus       317 ~~~~--~~A~~~~~~al~l~~~~  337 (340)
                      .|++  ++|+..|+++++++|+.
T Consensus        92 ~~~~~~~~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           92 ASQHMTAQTRAMIDKALALDSNE  114 (177)
T ss_dssp             TTTCCCHHHHHHHHHHHHHCTTC
T ss_pred             cCCcchHHHHHHHHHHHHhCCCc
Confidence            9999  99999999999999874

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.37  E-value=2.7e-12  Score=109.65  Aligned_cols=98  Identities=13%  Similarity=0.065  Sum_probs=47.7

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhc
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  317 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~  317 (340)
                      +...|..+...|++++|+..|+++++.+|. ++.++.++|.+|..+|++++|+..++++++++|+++.+++.+|...+..
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  155 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN  155 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence            344444444455555555555555555554 4455555555555555555555555555555555555555555222223


Q ss_pred             CChHHHHHHHHHhhccccc
Q 019475          318 GMENDARETLKDGTNLEAK  336 (340)
Q Consensus       318 ~~~~~A~~~~~~al~l~~~  336 (340)
                      +++++|++.|+++++++|+
T Consensus       156 ~~~~~A~~~~~~a~~~~p~  174 (272)
T 3u4t_A          156 KEYVKADSSFVKVLELKPN  174 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHhCcc
Confidence            3555555555555544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.37  E-value=3.1e-12  Score=108.05  Aligned_cols=101  Identities=10%  Similarity=0.026  Sum_probs=63.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhh--hCCCchHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV--VSPDWPTALYLQAA  312 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~~g~  312 (340)
                      ...+...|..++..|++++|+..|+++++.+|. +..++.++|.+|..+|++++|+..++++++  .+|++..+++.+|.
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~  149 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL  149 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence            344555566666666666666666666666666 666666666666666666666666666666  55666666666666


Q ss_pred             HHHhcCChHHHHHHHHHhhccccc
Q 019475          313 CLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ++..+|++++|++.|+++++++|.
T Consensus       150 ~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          150 VSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCcc
Confidence            666666666666666666665554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.36  E-value=1.9e-12  Score=112.56  Aligned_cols=102  Identities=15%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             HHhHHHhHhHHhhc-CCHHHHHHHHHhhhcCCCCCC------hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchH--
Q 019475          235 TLNSKKHGDTAFRA-KDFSTAIDCYTQFIDGGTMVS------PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT--  305 (340)
Q Consensus       235 ~~~~~~~g~~~~~~-g~~~~A~~~~~~ai~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~--  305 (340)
                      +..+...|..+... |++++|+..|++|+++.|. +      ..++.++|.+|..+|+|++|+..|++++++.|++..  
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ-DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            55678889999996 9999999999999999886 3      568999999999999999999999999999998654  


Q ss_pred             -----HHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          306 -----ALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       306 -----a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                           +++++|.++..+|++++|+..|+++++++|+.
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence                 68999999999999999999999999999973

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.36  E-value=3.1e-12  Score=115.39  Aligned_cols=102  Identities=15%  Similarity=0.045  Sum_probs=85.4

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..+.+.|++++|+..|+++++++|. ++.++.++|.++..+|++++|+..++++++++|++..+++.+|.++
T Consensus       271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  349 (388)
T 1w3b_A          271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL  349 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            345667788888888888888888888888888 8888888888888888888888888888888888888888888888


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|++++|+..|+++++++|+.
T Consensus       350 ~~~g~~~~A~~~~~~a~~~~p~~  372 (388)
T 1w3b_A          350 QQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCC
Confidence            88888888888888888888763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.36  E-value=8.8e-13  Score=101.80  Aligned_cols=82  Identities=10%  Similarity=-0.029  Sum_probs=75.9

Q ss_pred             HHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          256 DCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       256 ~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      ..|.++++++|+ +..+++++|.++...|+|++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++++++|
T Consensus         5 ~~l~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSED-TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHH-HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            578899999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 019475          336 KKN  338 (340)
Q Consensus       336 ~~~  338 (340)
                      ...
T Consensus        84 ~~~   86 (142)
T 2xcb_A           84 NEP   86 (142)
T ss_dssp             TCT
T ss_pred             CCc
Confidence            753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=2.8e-12  Score=107.39  Aligned_cols=102  Identities=12%  Similarity=0.058  Sum_probs=97.4

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..++..|++++|+..|+++++.+|+ +..+++++|.++...|++++|+..++++++.+|++..+++.+|.++
T Consensus       125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            345777899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|++++|++.|+++++++|..
T Consensus       204 ~~~~~~~~A~~~~~~~~~~~p~~  226 (243)
T 2q7f_A          204 AYKENREKALEMLDKAIDIQPDH  226 (243)
T ss_dssp             HHTTCTTHHHHHHHHHHHHCTTC
T ss_pred             HHccCHHHHHHHHHHHHccCcch
Confidence            99999999999999999999874

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.36  E-value=2.1e-12  Score=112.32  Aligned_cols=92  Identities=12%  Similarity=0.062  Sum_probs=86.6

Q ss_pred             HhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHH-H
Q 019475          245 AFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEND-A  323 (340)
Q Consensus       245 ~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~-A  323 (340)
                      +...|++++|+..|+++++.+|+ ++.+++++|.++.++|++++|+..++++++++|+++.+++++|.++..+|++++ |
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            34568999999999999999999 999999999999999999999999999999999999999999999999999987 5


Q ss_pred             HHHHHHhhcccccc
Q 019475          324 RETLKDGTNLEAKK  337 (340)
Q Consensus       324 ~~~~~~al~l~~~~  337 (340)
                      .+.++++++++|+.
T Consensus       255 ~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          255 NRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCCC
Confidence            68889999999974

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.35  E-value=7.5e-12  Score=103.28  Aligned_cols=103  Identities=15%  Similarity=0.003  Sum_probs=87.0

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhc-CChHHHHHHHHhhhh--hCCCchHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN-DMPQEALGDAMQAQV--VSPDWPTALYLQ  310 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~--l~p~~~~a~~~~  310 (340)
                      ....+...|..+...|++++|+..|+++++.+|. +..++.++|.+|... |++++|+..++++++  .+|+...+++.+
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l  119 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK  119 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence            3556777888888888888888888888888888 888888888888888 888888888888888  667778888888


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.++..+|++++|+..|+++++++|..
T Consensus       120 ~~~~~~~~~~~~A~~~~~~~~~~~~~~  146 (225)
T 2vq2_A          120 GICSAKQGQFGLAEAYLKRSLAAQPQF  146 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            888888888888888888888887753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.35  E-value=3.5e-12  Score=115.04  Aligned_cols=101  Identities=17%  Similarity=0.166  Sum_probs=71.5

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ..+...|..+...|++++|+..|+++++++|+ ++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus       204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T 1w3b_A          204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            34556666666677777777777777777776 77777777777777777777777777777777777777777777777


Q ss_pred             hcCChHHHHHHHHHhhcccccc
Q 019475          316 SLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .+|++++|++.|+++++++|..
T Consensus       283 ~~g~~~~A~~~~~~al~~~p~~  304 (388)
T 1w3b_A          283 EKGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHHHHhhCccc
Confidence            7777777777777777776653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.35  E-value=7.9e-12  Score=110.61  Aligned_cols=102  Identities=15%  Similarity=0.183  Sum_probs=94.9

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh----hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .......|..+++.|++++|+..|+++++..|+ ++    .++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  312 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR  312 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            344567799999999999999999999999999 77    4577899999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.++..+|++++|++.|+++++++|+.
T Consensus       313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          313 AEAYLIEEMYDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999974

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.33  E-value=6.1e-12  Score=110.04  Aligned_cols=104  Identities=12%  Similarity=0.029  Sum_probs=98.8

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+..+|..++..|++++|+..|+++++.+|+ +..+++++|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            3456788899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +..+|++++|++.|+++++++|+..
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccH
Confidence            9999999999999999999988743

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.33  E-value=4.2e-12  Score=120.76  Aligned_cols=103  Identities=10%  Similarity=-0.004  Sum_probs=98.9

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..++..|++++|+..|+++++++|+ ++.+++++|.+|..+|++++|++.++++++++|++..+++.+|.+
T Consensus        56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  134 (568)
T 2vsy_A           56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW  134 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3557788999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhc---CChHHHHHHHHHhhcccccc
Q 019475          314 LFSL---GMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~---~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+   |++++|++.|+++++++|+.
T Consensus       135 ~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          135 RRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            9999   99999999999999999874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.33  E-value=8.6e-12  Score=109.08  Aligned_cols=102  Identities=13%  Similarity=0.140  Sum_probs=98.0

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..++..|++++|+..|+++++.+|+ ++.++.++|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3456788899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +..+|++++|++.|+++++++|.
T Consensus       250 ~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          250 YSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999987

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.32  E-value=7.8e-12  Score=105.53  Aligned_cols=101  Identities=12%  Similarity=0.012  Sum_probs=96.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +..+...|..++..|++++|+..|+++++.+|. +..+++++|.+|...|++++|+..++++++++|++..+++.+|.++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            567888999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhc--cccc
Q 019475          315 FSLGMENDARETLKDGTN--LEAK  336 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~--l~~~  336 (340)
                      ..+|++++|++.|+++++  .+|.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~  139 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPE  139 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTT
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcc
Confidence            999999999999999998  5543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.32  E-value=5.7e-12  Score=99.08  Aligned_cols=101  Identities=15%  Similarity=0.016  Sum_probs=92.0

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH--
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA--  311 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g--  311 (340)
                      ....+...|..++..|+|++|+..|+++++++|. ++.+++++|.++..+|++++|+..++++++++|++..++..++  
T Consensus        46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           46 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3567788999999999999999999999999999 9999999999999999999999999999999999999985554  


Q ss_pred             HHHHhcCChHHHHHHHHHhhcccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      ..+..+|++++|++.++++.++-+
T Consensus       125 ~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A          125 NKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccchHHHhc
Confidence            458899999999999999876644

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.32  E-value=6e-12  Score=110.22  Aligned_cols=102  Identities=6%  Similarity=-0.061  Sum_probs=80.0

Q ss_pred             HHhHHHhHhHHhhcC-CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAK-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g-~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ...+...|..++..| ++++|+..|+++++.+|. +..+|.++|.++..+|++++|+..+++++++.|++..+++.+|.+
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  168 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE  168 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            335667777777777 788888888888888887 778888888888888888888888888888888877888888888


Q ss_pred             HHhcCChHHHHHHHHHhhcccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+|++++|+..|+++++++|..
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~~~~  192 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIAPED  192 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCC
Confidence            888888888888888888777653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.31  E-value=8.1e-12  Score=94.23  Aligned_cols=85  Identities=11%  Similarity=0.008  Sum_probs=80.8

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..++..|++++|+..|+++++.+|. ++.+++++|.+|..+|++++|+..++++++++|++..+++.+|.+
T Consensus        49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  127 (133)
T 2lni_A           49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC  127 (133)
T ss_dssp             CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            4567888999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCC
Q 019475          314 LFSLGM  319 (340)
Q Consensus       314 ~~~~~~  319 (340)
                      +..+|+
T Consensus       128 ~~~~~~  133 (133)
T 2lni_A          128 MMAQYN  133 (133)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            998775

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.31  E-value=4.1e-12  Score=110.49  Aligned_cols=103  Identities=9%  Similarity=-0.186  Sum_probs=93.5

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC------hhHhhhhhHHHHhc-CChHHHHHHHHhhhhhCCCc---
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS------PTVYARRCLSYLMN-DMPQEALGDAMQAQVVSPDW---  303 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~al~l~p~~---  303 (340)
                      .+..+.+.|..+...|++++|+..|++|+++.+. .      +.++.++|.+|..+ |++++|+..|++|+++.|+.   
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~-~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH-RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            4667889999999999999999999999998775 3      56899999999996 99999999999999998864   


Q ss_pred             ---hHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          304 ---PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       304 ---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                         ..++.++|.++..+|+|++|+..|+++++++|..
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence               5689999999999999999999999999998764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.31  E-value=6.4e-12  Score=104.85  Aligned_cols=102  Identities=14%  Similarity=0.052  Sum_probs=92.6

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChh---HhhhhhHHHHh------------------cCChHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT---VYARRCLSYLM------------------NDMPQEALGDA  293 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~---~~~~~~~~~~~------------------~~~~~~A~~~~  293 (340)
                      ...+...|..+++.|+|++|+..|+++++.+|+ +..   +++++|.++..                  +|++++|+..|
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence            346788899999999999999999999999999 764   89999999986                  67999999999


Q ss_pred             HhhhhhCCCchHHH-----------------HHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          294 MQAQVVSPDWPTAL-----------------YLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       294 ~~al~l~p~~~~a~-----------------~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +++++.+|+...++                 +.+|.+|+..|++++|+..|+++++.+|+.
T Consensus       120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC
Confidence            99999999988765                 688999999999999999999999998874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=108.49  Aligned_cols=102  Identities=14%  Similarity=-0.015  Sum_probs=97.5

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..++..|++++|+..|+++++..|+ +..++.++|.+|..+|++++|+..++++++++|+++.+++.+|.+
T Consensus       124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  202 (330)
T 3hym_B          124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV  202 (330)
T ss_dssp             CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3456889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +..+|++++|+..|++++++.++
T Consensus       203 ~~~~~~~~~A~~~~~~a~~~~~~  225 (330)
T 3hym_B          203 AFQNGEWKTAEKWFLDALEKIKA  225 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcccHHHHHHHHHHHHHHhhh
Confidence            99999999999999999998765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.30  E-value=1.6e-11  Score=101.24  Aligned_cols=97  Identities=10%  Similarity=-0.002  Sum_probs=54.8

Q ss_pred             HHHhHhHHhhc-CCHHHHHHHHHhhhc--CCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          238 SKKHGDTAFRA-KDFSTAIDCYTQFID--GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       238 ~~~~g~~~~~~-g~~~~A~~~~~~ai~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +...|..++.. |++++|+..|+++++  ..|. +..+++++|.++..+|++++|+..++++++.+|++..+++.+|.++
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  157 (225)
T 2vq2_A           79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK  157 (225)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            34445555555 555555555555555  3344 4555555555555555555555555555555555555555555555


Q ss_pred             HhcCChHHHHHHHHHhhcccc
Q 019475          315 FSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~  335 (340)
                      ..+|++++|+..|+++++++|
T Consensus       158 ~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          158 MLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHHhCC
Confidence            555555555555555555554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.30  E-value=1.4e-12  Score=121.43  Aligned_cols=102  Identities=17%  Similarity=0.098  Sum_probs=92.1

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+...|..+++.|+|++|+..|++|++++|+ ++.+|+++|.+|..+|++++|+..+++|++++|++..++..+|.+
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3667889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             --HHhcCChHHHHHHHH-----------Hhhccccc
Q 019475          314 --LFSLGMENDARETLK-----------DGTNLEAK  336 (340)
Q Consensus       314 --~~~~~~~~~A~~~~~-----------~al~l~~~  336 (340)
                        +..+|++++|++.|+           ++++++|+
T Consensus       118 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1          118 NKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence              899999999999999           88888776

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.30  E-value=1.8e-11  Score=112.32  Aligned_cols=100  Identities=15%  Similarity=0.202  Sum_probs=94.3

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh----hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      .....|..++..|++++|+..|++++++.|+ ++    .++.++|.++.++|++++|+..++++++++|+++.+|+.+|.
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  337 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE  337 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4456699999999999999999999999999 74    489999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhhcccccc
Q 019475          313 CLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++..+|++++|+..|+++++++|+.
T Consensus       338 ~~~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          338 AYLIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcch
Confidence            9999999999999999999999974

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.29  E-value=2.1e-11  Score=104.01  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=83.8

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCch----------
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP----------  304 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~----------  304 (340)
                      ...+...|..++..|++++|+..|+++++++|. +..+++++|.+|..+|++++|+..++++++++|++.          
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  155 (275)
T 1xnf_A           77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE  155 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            345677788888888999999999999988888 888888999999999999999998888888888764          


Q ss_pred             ------------------------------------------------------------HHHHHHHHHHHhcCChHHHH
Q 019475          305 ------------------------------------------------------------TALYLQAACLFSLGMENDAR  324 (340)
Q Consensus       305 ------------------------------------------------------------~a~~~~g~~~~~~~~~~~A~  324 (340)
                                                                                  .+++.+|.++..+|++++|+
T Consensus       156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  235 (275)
T 1xnf_A          156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT  235 (275)
T ss_dssp             HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence                                                                        56677788888888888888


Q ss_pred             HHHHHhhccccc
Q 019475          325 ETLKDGTNLEAK  336 (340)
Q Consensus       325 ~~~~~al~l~~~  336 (340)
                      ..|+++++++|+
T Consensus       236 ~~~~~al~~~p~  247 (275)
T 1xnf_A          236 ALFKLAVANNVH  247 (275)
T ss_dssp             HHHHHHHTTCCT
T ss_pred             HHHHHHHhCCch
Confidence            888888887775

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.26  E-value=2.6e-11  Score=97.01  Aligned_cols=83  Identities=13%  Similarity=-0.016  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc--hHHHHHHHHHHHhcCChHHHHHH
Q 019475          249 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQAACLFSLGMENDARET  326 (340)
Q Consensus       249 g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g~~~~~~~~~~~A~~~  326 (340)
                      ++..+|+..|+++++.+|+ ++.+++++|.++..+|++++|+..++++++++|++  ..+++.+|.++..+|++++|+..
T Consensus        88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            3455689999999999999 99999999999999999999999999999999986  56999999999999999999999


Q ss_pred             HHHhhc
Q 019475          327 LKDGTN  332 (340)
Q Consensus       327 ~~~al~  332 (340)
                      |+++|.
T Consensus       167 y~~al~  172 (176)
T 2r5s_A          167 YRRQLY  172 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999985

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.25  E-value=5.1e-12  Score=112.27  Aligned_cols=100  Identities=15%  Similarity=0.027  Sum_probs=59.6

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH-HH
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC-LF  315 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~-~~  315 (340)
                      .+...|..+++.|+|++|+..|+++|+++|+ +..+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+ ..
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999 999999999999999999999999999999999999999999998 56


Q ss_pred             hcCChHHHHHHHHHhhcccccc
Q 019475          316 SLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+.+++|...|+++++.+|..
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCC
Confidence            6778899999999999999874

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.24  E-value=2.2e-11  Score=88.98  Aligned_cols=69  Identities=17%  Similarity=0.121  Sum_probs=66.7

Q ss_pred             ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          269 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++.+++++|.++..+|+|++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++|+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            578899999999999999999999999999999999999999999999999999999999999999874

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.24  E-value=3.8e-11  Score=104.33  Aligned_cols=103  Identities=12%  Similarity=-0.031  Sum_probs=89.6

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhh--HHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRC--LSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      ...+...|..+.+.|++++|+..|+++++.+|+ +.......+  ..+...|++++|+..|+++++.+|+++.+++.+|.
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~  208 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA  208 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            456777889999999999999999999999998 764433333  23335589999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhhccccccc
Q 019475          313 CLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ++..+|++++|+..|+++++++|+..
T Consensus       209 ~~~~~g~~~eA~~~l~~al~~~p~~~  234 (291)
T 3mkr_A          209 CHMAQGRWEAAEGVLQEALDKDSGHP  234 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.23  E-value=5.8e-11  Score=111.34  Aligned_cols=104  Identities=13%  Similarity=0.057  Sum_probs=95.1

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..++..|++++|+..|+++++.+|+ +..+++++|.+|..+|++++|+..++++++++|+++.+++.+|.+
T Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  387 (537)
T 3fp2_A          309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI  387 (537)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3556788899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +..+|++++|+..|+++++++|+..
T Consensus       388 ~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          388 LTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHhCCHHHHHHHHHHHHHcCCcch
Confidence            9999999999999999999988643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.23  E-value=2.2e-11  Score=112.66  Aligned_cols=91  Identities=14%  Similarity=0.154  Sum_probs=83.6

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+..+|..+++.|+|++|+..|++||+++|+ ++.+|+++|.+|..+|+|++|+.+|++|++++|++..++..+|.++
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            567889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHH
Q 019475          315 FSLGMENDARET  326 (340)
Q Consensus       315 ~~~~~~~~A~~~  326 (340)
                      ..++++++|...
T Consensus       396 ~~~~~~~~a~~~  407 (457)
T 1kt0_A          396 KKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.22  E-value=2.5e-11  Score=95.85  Aligned_cols=84  Identities=5%  Similarity=-0.149  Sum_probs=78.2

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ......+...|..++..|+|++|+..|+++++++|+ ++.+|+++|.+|..+|++++|+..|+++++++|++..+++++|
T Consensus        42 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           42 PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            345667899999999999999999999999999999 9999999999999999999999999999999999999999988


Q ss_pred             HHHHh
Q 019475          312 ACLFS  316 (340)
Q Consensus       312 ~~~~~  316 (340)
                      .+...
T Consensus       121 l~~~~  125 (164)
T 3sz7_A          121 LETTK  125 (164)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.21  E-value=3.9e-11  Score=89.88  Aligned_cols=87  Identities=14%  Similarity=0.029  Sum_probs=82.4

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..++..|++++|+..|.++++.+|+ ++.+++++|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  123 (131)
T 2vyi_A           45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA  123 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            3557788999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChH
Q 019475          314 LFSLGMEN  321 (340)
Q Consensus       314 ~~~~~~~~  321 (340)
                      +..+|+++
T Consensus       124 ~~~~~~~~  131 (131)
T 2vyi_A          124 ELKLREAP  131 (131)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHhcCC
Confidence            99999863

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.21  E-value=2.3e-11  Score=99.20  Aligned_cols=97  Identities=12%  Similarity=0.076  Sum_probs=84.0

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..++..|+|++|+..|+++++++|+ +..+++++|.+|..+|+|++|+..|+++++++|++..++..++.++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            456788899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHH-HHHHHhhc
Q 019475          315 FSLGMENDAR-ETLKDGTN  332 (340)
Q Consensus       315 ~~~~~~~~A~-~~~~~al~  332 (340)
                      ..+++++++. ..|++.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999988 55555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=6.7e-11  Score=112.07  Aligned_cols=108  Identities=4%  Similarity=-0.138  Sum_probs=99.2

Q ss_pred             hHHHHHHHhHHHhHhHHhhcCC----------HHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcC--ChHHHHHHHHhh
Q 019475          229 TSQMQETLNSKKHGDTAFRAKD----------FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND--MPQEALGDAMQA  296 (340)
Q Consensus       229 ~~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a  296 (340)
                      .-.+.....|..+|..+...|+          +++|+++|+++|+.+|+ ++.+|++|+.++.+++  ++++|++.++++
T Consensus        57 ~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~  135 (567)
T 1dce_A           57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARF  135 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence            3344556678888888888887          99999999999999999 9999999999999999  679999999999


Q ss_pred             hhhCCCchHHHHHHHHHHHhcC-ChHHHHHHHHHhhcccccc
Q 019475          297 QVVSPDWPTALYLQAACLFSLG-MENDARETLKDGTNLEAKK  337 (340)
Q Consensus       297 l~l~p~~~~a~~~~g~~~~~~~-~~~~A~~~~~~al~l~~~~  337 (340)
                      ++++|++..||+.+|.++..+| .+++|++++.+++++||+.
T Consensus       136 l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n  177 (567)
T 1dce_A          136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  177 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred             HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999 9999999999999999874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.20  E-value=5.2e-11  Score=88.46  Aligned_cols=86  Identities=9%  Similarity=-0.064  Sum_probs=75.6

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ......+...|..++..|+|++|+..|+++++++|+ ++.+++++|.+|..+|++++|+..+++++++.|+++.......
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            455678899999999999999999999999999999 9999999999999999999999999999999999988765444


Q ss_pred             HHHHhcC
Q 019475          312 ACLFSLG  318 (340)
Q Consensus       312 ~~~~~~~  318 (340)
                      .+....+
T Consensus       103 ai~~~~~  109 (117)
T 3k9i_A          103 AILFYAD  109 (117)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            4433333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.20  E-value=5.1e-11  Score=103.26  Aligned_cols=90  Identities=10%  Similarity=-0.039  Sum_probs=80.5

Q ss_pred             HhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc--hHHHHHHHHHHHhcCC
Q 019475          242 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQAACLFSLGM  319 (340)
Q Consensus       242 g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g~~~~~~~~  319 (340)
                      +..+.+.++.++|+..|+++++.+|+ ++.+++++|.+|..+|++++|+..++++++++|++  ..++.++|.++..+|+
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence            33445555666667777777888999 99999999999999999999999999999999999  8999999999999999


Q ss_pred             hHHHHHHHHHhhc
Q 019475          320 ENDARETLKDGTN  332 (340)
Q Consensus       320 ~~~A~~~~~~al~  332 (340)
                      .++|+..|++++.
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999999985

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.20  E-value=3.2e-11  Score=104.77  Aligned_cols=100  Identities=14%  Similarity=0.155  Sum_probs=87.7

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhc-------CCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc----
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFID-------GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----  303 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~-------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----  303 (340)
                      +..+...|..++..|+|++|+..|.+|++       ..+. ...+++|+|.+|.++|+|++|+..+++|+++.+..    
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF-DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            44678899999999999999999999994       2222 55689999999999999999999999999887544    


Q ss_pred             --hHHHHHHHHHHHhcCC-hHHHHHHHHHhhcccc
Q 019475          304 --PTALYLQAACLFSLGM-ENDARETLKDGTNLEA  335 (340)
Q Consensus       304 --~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~~  335 (340)
                        +.+|+++|.++..+|+ +++|++.|++|+++-.
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence              7899999999999995 6999999999998754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.19  E-value=1.6e-10  Score=100.49  Aligned_cols=114  Identities=7%  Similarity=-0.051  Sum_probs=102.3

Q ss_pred             hhhhhhhHHHHHHHhHHHhHhHHhhcC--CHHHHHHHHHhhhcCCCCCChhHhhhhhHHH----Hhc---CChHHHHHHH
Q 019475          223 LSFQMWTSQMQETLNSKKHGDTAFRAK--DFSTAIDCYTQFIDGGTMVSPTVYARRCLSY----LMN---DMPQEALGDA  293 (340)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~----~~~---~~~~~A~~~~  293 (340)
                      .......-.+.....+..+|..+...|  ++++++++++++|..+|+ ++.+|+.|+.++    ..+   +++++++..+
T Consensus        55 ~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~  133 (306)
T 3dra_A           55 ITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDIL  133 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHH
T ss_pred             HHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            333333444555668899999999988  999999999999999999 999999999999    777   8999999999


Q ss_pred             HhhhhhCCCchHHHHHHHHHHHhcCChH--HHHHHHHHhhcccccc
Q 019475          294 MQAQVVSPDWPTALYLQAACLFSLGMEN--DARETLKDGTNLEAKK  337 (340)
Q Consensus       294 ~~al~l~p~~~~a~~~~g~~~~~~~~~~--~A~~~~~~al~l~~~~  337 (340)
                      +++++++|++..+|+.++.++..+|+++  ++++.+.+++++||+.
T Consensus       134 ~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N  179 (306)
T 3dra_A          134 EAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN  179 (306)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999  9999999999999874

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.19  E-value=5.8e-11  Score=109.74  Aligned_cols=98  Identities=12%  Similarity=0.001  Sum_probs=52.0

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCC--------CCCChhHhhhhhHHHHhc--CChHHHHHHHHhhhhhCCCchHHH
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGG--------TMVSPTVYARRCLSYLMN--DMPQEALGDAMQAQVVSPDWPTAL  307 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~--------p~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~l~p~~~~a~  307 (340)
                      +.+.|..++..|+|++|+..|++++++.        +. .+.++.++|.++.+.  ++|++|+..|++|++++|+++.++
T Consensus        97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~  175 (472)
T 4g1t_A           97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT  175 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence            4445555555555555555555555432        12 344555555554443  245555555555555555555555


Q ss_pred             HHHHHHHH---hcCChHHHHHHHHHhhccccc
Q 019475          308 YLQAACLF---SLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       308 ~~~g~~~~---~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +.+|.+++   ..+++++|++.|++|++++|+
T Consensus       176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~  207 (472)
T 4g1t_A          176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD  207 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence            55555532   334555555555555555554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=3.7e-11  Score=102.54  Aligned_cols=103  Identities=11%  Similarity=-0.007  Sum_probs=95.3

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC--------CCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhh-----
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-----  299 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----  299 (340)
                      .....+...|..++..|++++|+..|.+++++        +|. ...++.++|.+|..+|++++|+..+++++++     
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  161 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD-VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL  161 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            44667888999999999999999999999987        466 7899999999999999999999999999999     


Q ss_pred             ---CCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          300 ---SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       300 ---~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                         .|....+++.+|.++..+|++++|+..|++++++.++
T Consensus       162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence               8888999999999999999999999999999998654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.19  E-value=8.3e-11  Score=85.62  Aligned_cols=72  Identities=13%  Similarity=0.063  Sum_probs=69.7

Q ss_pred             CCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          264 GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       264 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ++|+ ++.+++++|.++...|++++|+..++++++++|++..+++.+|.++..+|++++|++.|+++++++|+
T Consensus         1 l~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            1 MVDQ-NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCS-STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCC-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            4688 99999999999999999999999999999999999999999999999999999999999999999887

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.18  E-value=5.2e-11  Score=83.68  Aligned_cols=69  Identities=17%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          269 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++.+++++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|..
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            678999999999999999999999999999999999999999999999999999999999999999874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.18  E-value=9.2e-11  Score=102.62  Aligned_cols=84  Identities=10%  Similarity=-0.114  Sum_probs=56.7

Q ss_pred             HHHHHHHHhhhc-CCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchH-HHHHHHHHHHhcCChHHHHHHHHH
Q 019475          252 STAIDCYTQFID-GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT-ALYLQAACLFSLGMENDARETLKD  329 (340)
Q Consensus       252 ~~A~~~~~~ai~-~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~~g~~~~~~~~~~~A~~~~~~  329 (340)
                      ++|+..|++|++ ++|+ +..+|.++|.++..+|++++|...|+++++++|+++. +|+.+|.++..+|++++|+..|++
T Consensus        81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            666666666666 5666 6666666666666666666666666666666666665 666666666666666666666666


Q ss_pred             hhccccc
Q 019475          330 GTNLEAK  336 (340)
Q Consensus       330 al~l~~~  336 (340)
                      |++++|.
T Consensus       160 a~~~~p~  166 (308)
T 2ond_A          160 AREDART  166 (308)
T ss_dssp             HHTSTTC
T ss_pred             HHhcCCC
Confidence            6666553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.18  E-value=5.9e-11  Score=112.94  Aligned_cols=102  Identities=17%  Similarity=0.138  Sum_probs=89.2

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcC------CCCCC-hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG------GTMVS-PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  307 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~------~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  307 (340)
                      ...+...|..+.+.|++++|++.|+++++.      +|+ + ..+|.++|.+|.+.|++++|+..++++++++|+++.+|
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK-PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG-GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            345677888888899999999999999887      555 4 67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          308 YLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       308 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +.+|.+|..+|++++|++.|+++++++|+.
T Consensus       554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          554 TAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999998874

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.18  E-value=2.9e-11  Score=95.27  Aligned_cols=89  Identities=9%  Similarity=-0.047  Sum_probs=79.5

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCch-HHHHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-TALYLQA  311 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g  311 (340)
                      .....+...|..+++.|+|++|+..|+++|+++|+ ++.+|+++|.+|..+|+|++|+.+|++|++++|++. .....++
T Consensus        61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~  139 (162)
T 3rkv_A           61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK  139 (162)
T ss_dssp             THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34567889999999999999999999999999999 999999999999999999999999999999999999 5677777


Q ss_pred             HHHHhcCChHH
Q 019475          312 ACLFSLGMEND  322 (340)
Q Consensus       312 ~~~~~~~~~~~  322 (340)
                      .+...++++.+
T Consensus       140 ~~~~~~~~~~~  150 (162)
T 3rkv_A          140 IVTERRAEKKA  150 (162)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHH
Confidence            77766655443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.18  E-value=1e-10  Score=105.17  Aligned_cols=95  Identities=15%  Similarity=0.119  Sum_probs=89.2

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .......+...|..+++.|+|++|+..|++||+++|+ ++.+|+++|.+|..+|+|++|+.++++|++++|++..++..+
T Consensus       269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3445667889999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHH
Q 019475          311 AACLFSLGMENDARET  326 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~  326 (340)
                      +.++..++++++|.+.
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.18  E-value=5.2e-11  Score=101.57  Aligned_cols=100  Identities=10%  Similarity=-0.019  Sum_probs=92.8

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC--------CCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhh-----
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-----  299 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----  299 (340)
                      ..+..+...|..++..|++++|+..|.+++++        .|. ...++.++|.+|..+|++++|+..+++++++     
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            44667888999999999999999999999977        355 7889999999999999999999999999998     


Q ss_pred             ---CCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 019475          300 ---SPDWPTALYLQAACLFSLGMENDARETLKDGTNL  333 (340)
Q Consensus       300 ---~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  333 (340)
                         +|....+++.+|.++..+|++++|+..|++++++
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               5888999999999999999999999999999998

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=9e-11  Score=88.16  Aligned_cols=84  Identities=12%  Similarity=0.020  Sum_probs=78.5

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhC------CCchHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS------PDWPTA  306 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~------p~~~~a  306 (340)
                      .....+...|..+++.|+|++|+..|+++++++|+ ++.+|+++|.+|..+|++++|+..++++++++      |++..+
T Consensus        36 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~  114 (126)
T 3upv_A           36 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI  114 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHH
Confidence            34567899999999999999999999999999999 99999999999999999999999999999999      999999


Q ss_pred             HHHHHHHHHhc
Q 019475          307 LYLQAACLFSL  317 (340)
Q Consensus       307 ~~~~g~~~~~~  317 (340)
                      +..++.+...+
T Consensus       115 ~~~l~~~~~~l  125 (126)
T 3upv_A          115 DQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99998887654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.16  E-value=5e-11  Score=104.31  Aligned_cols=102  Identities=10%  Similarity=0.004  Sum_probs=89.9

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC-----ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc-----
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-----  303 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----  303 (340)
                      .+..+...|..+.. |++++|+..|++|+++.+..     ...++.++|.+|..+|+|++|+..|++++++.|++     
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT  193 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence            35677888988988 99999999999999987751     15789999999999999999999999999987654     


Q ss_pred             -hHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          304 -PTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       304 -~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                       ..+++.+|.++..+|++++|+..|++++ ++|..
T Consensus       194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence             3488899999999999999999999999 98863

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.15  E-value=2.9e-11  Score=93.66  Aligned_cols=73  Identities=15%  Similarity=-0.022  Sum_probs=65.2

Q ss_pred             HHHHHhHHHhHhHHhhcCCH----------HHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcC-----------ChHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDF----------STAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-----------MPQEAL  290 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~-----------~~~~A~  290 (340)
                      +..++.+...|..+...+++          ++|+..|++||+++|+ +..+|+|+|.+|..+|           +|++|+
T Consensus        33 P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~  111 (158)
T 1zu2_A           33 PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  111 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence            44566788889988887765          5999999999999999 9999999999999985           899999


Q ss_pred             HHHHhhhhhCCCchH
Q 019475          291 GDAMQAQVVSPDWPT  305 (340)
Q Consensus       291 ~~~~~al~l~p~~~~  305 (340)
                      ..|++|++++|++..
T Consensus       112 ~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A          112 QFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhCCCCHH
Confidence            999999999999753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.15  E-value=8.1e-11  Score=111.50  Aligned_cols=110  Identities=8%  Similarity=0.011  Sum_probs=100.0

Q ss_pred             hhHHHHHHHhHHHhHhHHhhcC--CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcC-ChHHHHHHHHhhhhhCCCch
Q 019475          228 WTSQMQETLNSKKHGDTAFRAK--DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWP  304 (340)
Q Consensus       228 ~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p~~~  304 (340)
                      ....++....|..++-.+.+.|  +|++|++.++++|+++|. |..+|++|+.+..++| .+++|+++++++|+++|++.
T Consensus       100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~  178 (567)
T 1dce_A          100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence            3344555667888888888889  779999999999999999 9999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHHHHhc--------------CChHHHHHHHHHhhccccccc
Q 019475          305 TALYLQAACLFSL--------------GMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       305 ~a~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .||+++|.++..+              +++++|++++++|++++|...
T Consensus       179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~  226 (567)
T 1dce_A          179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  226 (567)
T ss_dssp             HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence            9999999999986              668999999999999999853

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.15  E-value=1e-10  Score=101.54  Aligned_cols=101  Identities=14%  Similarity=0.129  Sum_probs=88.4

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhh---cCCCCCCh----hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC-----
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFI---DGGTMVSP----TVYARRCLSYLMNDMPQEALGDAMQAQVVSPD-----  302 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai---~~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-----  302 (340)
                      +..+...|..++..|+|++|+..|++|+   +..|+ +.    .+++|+|.+|..+|+|++|+..+++|+++.++     
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence            5577889999999999999999999999   44554 32    69999999999999999999999999988643     


Q ss_pred             -chHHHHHHHHHHHhcCChHHH-HHHHHHhhccccc
Q 019475          303 -WPTALYLQAACLFSLGMENDA-RETLKDGTNLEAK  336 (340)
Q Consensus       303 -~~~a~~~~g~~~~~~~~~~~A-~~~~~~al~l~~~  336 (340)
                       ...+|+++|.++..+|++++| ...|++|+++...
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~  269 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI  269 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence             378999999999999999999 7789999987543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.15  E-value=3.7e-11  Score=93.28  Aligned_cols=79  Identities=8%  Similarity=0.006  Sum_probs=71.0

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC-------CCCCChhHh----hhhhHHHHhcCChHHHHHHHHhhhhhCCC
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-------GTMVSPTVY----ARRCLSYLMNDMPQEALGDAMQAQVVSPD  302 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~-------~p~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~l~p~  302 (340)
                      .+..+.++|..+.+.|+|++|+.+|++||++       +|+ ++.+|    +|+|.++..+|+|++|+.+|++|++++|+
T Consensus        56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            4558999999999999999999999999999       999 99999    99999999999999999999999999998


Q ss_pred             chHHHHHHHHH
Q 019475          303 WPTALYLQAAC  313 (340)
Q Consensus       303 ~~~a~~~~g~~  313 (340)
                      +....-.+..+
T Consensus       135 d~~~~~~~~~~  145 (159)
T 2hr2_A          135 RKGETPGKERM  145 (159)
T ss_dssp             CCSCCTTHHHH
T ss_pred             cHHHHHHHHHH
Confidence            77655444333

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.14  E-value=4.2e-10  Score=97.60  Aligned_cols=98  Identities=9%  Similarity=0.034  Sum_probs=85.9

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC------hhHhhhhhHHHHhcCChHHHHHHHHhhh---hhCCCch----
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS------PTVYARRCLSYLMNDMPQEALGDAMQAQ---VVSPDWP----  304 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al---~l~p~~~----  304 (340)
                      ....|..+...|++++|+..|.+|++..+. .      ..+++++|.+|..+|+|++|+..+++|+   +..|++.    
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~  196 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCC-SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence            455777788899999999999999987655 3      5689999999999999999999999999   5566633    


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          305 TALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       305 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .+++++|.+|..+|+|++|+..|++|+++.++
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            69999999999999999999999999998754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.14  E-value=8.3e-11  Score=88.05  Aligned_cols=68  Identities=16%  Similarity=-0.057  Sum_probs=65.0

Q ss_pred             hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          270 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ...++++|.++...|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|..
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            34688999999999999999999999999999999999999999999999999999999999999974

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.14  E-value=1.6e-10  Score=107.65  Aligned_cols=102  Identities=13%  Similarity=0.020  Sum_probs=97.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..++..|++++|+..|+++++.+|. +..++.++|.+|..+|++++|+..++++++++|+++.+++.+|.++
T Consensus       304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  382 (514)
T 2gw1_A          304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL  382 (514)
T ss_dssp             THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence            456788899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|++++|+..|+++++++|+.
T Consensus       383 ~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          383 TDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHCCCHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999998875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.13  E-value=8.5e-11  Score=101.90  Aligned_cols=104  Identities=11%  Similarity=-0.038  Sum_probs=94.4

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC--------CCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhh----
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV----  299 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l----  299 (340)
                      ......+...|..++..|++++|+..|++++++        .|. ...+++++|.+|..+|++++|+..+++++++    
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  228 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER  228 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            445667888999999999999999999999987        666 7889999999999999999999999999974    


Q ss_pred             ---------------------------------------------CCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccc
Q 019475          300 ---------------------------------------------SPDWPTALYLQAACLFSLGMENDARETLKDGTNLE  334 (340)
Q Consensus       300 ---------------------------------------------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  334 (340)
                                                                   +|..+.+++.+|.+|..+|++++|++.|++++++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence                                                         57788899999999999999999999999999998


Q ss_pred             cc
Q 019475          335 AK  336 (340)
Q Consensus       335 ~~  336 (340)
                      |+
T Consensus       309 ~~  310 (311)
T 3nf1_A          309 KQ  310 (311)
T ss_dssp             C-
T ss_pred             hc
Confidence            75

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.13  E-value=8.6e-11  Score=91.33  Aligned_cols=98  Identities=11%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC-----ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc------hH
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW------PT  305 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~  305 (340)
                      .+...|..++..|++++|+..|++++++.+..     ...+++++|.++..+|++++|+..+++++++.+..      ..
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            45556666666667777777777666654430     14456666667777777777777777766666555      34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhccc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTNLE  334 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~l~  334 (340)
                      +++.+|.++..+|++++|++.|++++++-
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            56666666777777777777776666654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.12  E-value=1e-10  Score=84.33  Aligned_cols=84  Identities=11%  Similarity=0.084  Sum_probs=71.7

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc--hHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQA  311 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g  311 (340)
                      ....+...|..++..|+|++|+..|+++++++|+ ++.+|+++|.+|..+|++++|+..+++++++.|+.  ..+...+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~   84 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ   84 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence            4567888999999999999999999999999999 99999999999999999999999999999998754  33444445


Q ss_pred             HHHHhcC
Q 019475          312 ACLFSLG  318 (340)
Q Consensus       312 ~~~~~~~  318 (340)
                      ..+...+
T Consensus        85 ~~l~~~~   91 (100)
T 3ma5_A           85 DAKLKAE   91 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            5554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.12  E-value=1.4e-10  Score=105.00  Aligned_cols=102  Identities=14%  Similarity=0.098  Sum_probs=94.9

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh----hHhhhhhHHHHhcCChHHHHHHHHhhhhh------CCC
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----TVYARRCLSYLMNDMPQEALGDAMQAQVV------SPD  302 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~  302 (340)
                      ..+..+...|..++..|+|++|+..|++++++.|+ +.    .+++++|.+|..+|++++|+..+++++++      +|.
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            44667888999999999999999999999999999 76    58999999999999999999999999998      688


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          303 WPTALYLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       303 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      ...+++.+|.++..+|++++|+..|++++++.+
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  157 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR  157 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999843

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.12  E-value=1.7e-10  Score=109.86  Aligned_cols=95  Identities=12%  Similarity=-0.088  Sum_probs=48.9

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhc
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSL  317 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~  317 (340)
                      +...|..+.+.|++++|++.|+++++..|+ +..+|+++|.+|.+.|++++|++.|+++++++|+++.+|+.+|.++...
T Consensus       410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (597)
T 2xpi_A          410 WIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK  488 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            344444444455555555555555555554 4555555555555555555555555555555555555555555555555


Q ss_pred             CChHHHHHHHHHhhcc
Q 019475          318 GMENDARETLKDGTNL  333 (340)
Q Consensus       318 ~~~~~A~~~~~~al~l  333 (340)
                      |++++|++.|++++++
T Consensus       489 g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          489 SDMQTAINHFQNALLL  504 (597)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            5555555555555554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.12  E-value=1.9e-10  Score=100.36  Aligned_cols=101  Identities=14%  Similarity=0.119  Sum_probs=93.6

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC----hhHhhhhhHHHHhcCChHHHHHHHHhhhhh------CCCch
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS----PTVYARRCLSYLMNDMPQEALGDAMQAQVV------SPDWP  304 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~  304 (340)
                      ...+...|..++..|++++|+..|+++++..|. +    ..++.++|.+|..+|++++|+..+++++++      .|...
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            456788899999999999999999999999998 7    478999999999999999999999999988      56678


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          305 TALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       305 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .+++.+|.++..+|++++|+..|++++++.++
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.12  E-value=4.7e-10  Score=96.02  Aligned_cols=98  Identities=13%  Similarity=0.042  Sum_probs=85.1

Q ss_pred             HHHHhHHHhHhHHhh----cCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCCCch
Q 019475          233 QETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWP  304 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~  304 (340)
                      .....+...|..+..    .|++++|+..|+++++.  . ++.+++++|.+|..    .+++++|+..+++|++++  ++
T Consensus        36 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~  110 (273)
T 1ouv_A           36 KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA  110 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence            345567888888888    89999999999999887  3 68899999999999    999999999999998874  78


Q ss_pred             HHHHHHHHHHHh----cCChHHHHHHHHHhhcccc
Q 019475          305 TALYLQAACLFS----LGMENDARETLKDGTNLEA  335 (340)
Q Consensus       305 ~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~~  335 (340)
                      .+++.+|.+|..    .+++++|+..|++++++++
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~  145 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND  145 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence            999999999999    9999999999999998764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.12  E-value=8.3e-11  Score=102.92  Aligned_cols=103  Identities=10%  Similarity=-0.075  Sum_probs=90.6

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC-----ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc----
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----  303 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----  303 (340)
                      ..+..+...|..+...|+|++|+..|++|+++.+..     ...++.++|.+|.. |++++|+..|++|+++.|..    
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            335677888999999999999999999999875431     25689999999999 99999999999999998754    


Q ss_pred             --hHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          304 --PTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       304 --~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                        ..+++++|.+|..+|+|++|+..|++++++.++
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence              678999999999999999999999999998765

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.11  E-value=5e-11  Score=101.68  Aligned_cols=50  Identities=10%  Similarity=0.037  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHHHHHH-hCCCceecccCCCCeEEcCCCCeEEecccCcccC
Q 019475            3 WAMRLRVALYLAQALEYCS-SKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNS   55 (340)
Q Consensus         3 ~~~~~~i~~~i~~~l~~lH-~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~   55 (340)
                      +.+...++.||+.||.||| +.| |+||||||.|||++.  .++|+|||++...
T Consensus       169 ~~~~~~i~~qi~~~l~~lH~~~g-ivHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          169 ELDVEGIFNDVVENVKRLYQEAE-LVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTSC-EECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCC-EEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence            3467889999999999999 888 999999999999998  9999999998754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.11  E-value=1.8e-10  Score=103.81  Aligned_cols=104  Identities=15%  Similarity=0.123  Sum_probs=92.7

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC-----ChhHhhhhhHHHHhcCChHHHHHHHHhhhh-----hC-C
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-----SPTVYARRCLSYLMNDMPQEALGDAMQAQV-----VS-P  301 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----l~-p  301 (340)
                      ..+..+...|..+...|+|++|+..|.+|+++.+..     ...+++|+|.+|..+|++++|+..+++|++     -+ |
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence            345677888999999999999999999999876651     235899999999999999999999999999     46 8


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          302 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       302 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ..+.+++++|.++..+|++++|+..|++|+++.++
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999998544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.10  E-value=2.6e-10  Score=86.68  Aligned_cols=74  Identities=12%  Similarity=0.051  Sum_probs=68.9

Q ss_pred             cCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          263 DGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       263 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|. ++..++++|.++...|+|++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|..
T Consensus         3 ~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            3 HMKSP-SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             ---CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCccc-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence            35677 899999999999999999999999999999999999999999999999999999999999999999874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.10  E-value=4.4e-10  Score=98.29  Aligned_cols=96  Identities=14%  Similarity=0.013  Sum_probs=83.1

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHH-hcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL-MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      .+...|..+.+.|++++|+..|++|++.+|. +..+|...+.... .+|++++|+..|+++++++|+++.+|..+|..+.
T Consensus       136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  214 (308)
T 2ond_A          136 VYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            6778888888889999999999999998888 8888876666644 3799999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhhcc
Q 019475          316 SLGMENDARETLKDGTNL  333 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l  333 (340)
                      .+|++++|+..|++|++.
T Consensus       215 ~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          215 HLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHS
T ss_pred             HCCCHHHHHHHHHHHHhc
Confidence            999999999999999985

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.10  E-value=2.1e-10  Score=103.28  Aligned_cols=101  Identities=14%  Similarity=0.119  Sum_probs=93.4

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC----hhHhhhhhHHHHhcCChHHHHHHHHhhhhh------CCCch
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS----PTVYARRCLSYLMNDMPQEALGDAMQAQVV------SPDWP  304 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~  304 (340)
                      +..+...|..++..|+|++|+..|+++++..|. +    ..+++++|.+|..+|++++|+..+++++++      .|...
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            456788999999999999999999999999998 7    468999999999999999999999999988      56678


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          305 TALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       305 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .+++.+|.++..+|++++|+..|++++++.++
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999998775

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.10  E-value=2e-10  Score=99.66  Aligned_cols=100  Identities=8%  Similarity=-0.019  Sum_probs=85.3

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC-C----hhHhhhhhHHHHhcCChHHHHHHHHhhhhh-------CCCchH
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-S----PTVYARRCLSYLMNDMPQEALGDAMQAQVV-------SPDWPT  305 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~-~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------~p~~~~  305 (340)
                      +...|..++..|++++|+..|.+|+++.+.. +    ..+++++|.+|..+|+|++|+..+++|+++       .+....
T Consensus       118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  197 (293)
T 3u3w_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK  197 (293)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            3457888888999999999999999875541 1    337999999999999999999999999942       334556


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +++++|.+|..+|+|++|+..|++|+++.++.
T Consensus       198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999987653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.09  E-value=1.8e-10  Score=82.51  Aligned_cols=66  Identities=15%  Similarity=0.094  Sum_probs=62.9

Q ss_pred             hhhhhHHHHhcCChHHHHHHHHhhhhhCCCchH-HHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          273 YARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT-ALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       273 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .+++|.++...|+|++|+..|+++++++|+++. +++.+|.++..+|++++|++.|+++++++|+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            467899999999999999999999999999999 999999999999999999999999999999753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.09  E-value=4e-10  Score=96.14  Aligned_cols=100  Identities=12%  Similarity=-0.103  Sum_probs=89.1

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC-hhHhhhhhHHHHhcCChHHHHHHHHhhhhhC--CC-chHHHHHHHH
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS-PTVYARRCLSYLMNDMPQEALGDAMQAQVVS--PD-WPTALYLQAA  312 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~-~~~a~~~~g~  312 (340)
                      ....+|..+++.|+|++|+..|++++...+... ..+++++|.++..+|++++|+..|++++.-.  |. .+.+++++|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence            678889999999999999999999988632201 4589999999999999999999999998654  66 7789999999


Q ss_pred             HHHhcCChHHHHHHHHHhhccccc
Q 019475          313 CLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ++..+|+.++|...|++++..+|.
T Consensus       217 aL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999986

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.09  E-value=2.1e-10  Score=93.18  Aligned_cols=103  Identities=11%  Similarity=-0.071  Sum_probs=68.6

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC---CCC---CChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC--c-
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG---GTM---VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD--W-  303 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~---~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~-  303 (340)
                      ..+..+...|..+...|++++|+..|.+++++   .++   ....+++++|.++..+|++++|+..+++++++.+.  + 
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  143 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ  143 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence            34455667777777777777777777777766   221   13456777777777777777777777777765321  1 


Q ss_pred             ---hHHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          304 ---PTALYLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       304 ---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                         ..++..+|.++..+|++++|++.|++++++-.
T Consensus       144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence               22456777777777777777777777776643

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.08  E-value=2e-10  Score=103.42  Aligned_cols=94  Identities=14%  Similarity=0.124  Sum_probs=42.7

Q ss_pred             hHhHHhhcCCHHHHHHHHHhhhcC---CCC--CChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC-------chHHHH
Q 019475          241 HGDTAFRAKDFSTAIDCYTQFIDG---GTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD-------WPTALY  308 (340)
Q Consensus       241 ~g~~~~~~g~~~~A~~~~~~ai~~---~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-------~~~a~~  308 (340)
                      .|..++..|+|++|+..|++|+++   .++  ..+.+++++|.+|..+|++++|+..+++|+++.+.       ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            444444455555555555555443   111  02344444555555555555555555554444221       223444


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhccc
Q 019475          309 LQAACLFSLGMENDARETLKDGTNLE  334 (340)
Q Consensus       309 ~~g~~~~~~~~~~~A~~~~~~al~l~  334 (340)
                      .+|.++..+|++++|++.|++|+++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~  214 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMA  214 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            44444444444444444444444443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.07  E-value=2.3e-10  Score=105.66  Aligned_cols=102  Identities=10%  Similarity=-0.020  Sum_probs=89.3

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhc-------------------CChHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN-------------------DMPQEALGDAM  294 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~-------------------~~~~~A~~~~~  294 (340)
                      ....+...|..+...|++++|+..|++|++.+|+ ++.+++++|.+|...                   +.+++|+..++
T Consensus       246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  324 (472)
T 4g1t_A          246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK  324 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3456778899999999999999999999999999 999999999988653                   34678888999


Q ss_pred             hhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          295 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       295 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ++++++|++..+++.+|.++..+|++++|++.|+++|+++++
T Consensus       325 ~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~  366 (472)
T 4g1t_A          325 KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT  366 (472)
T ss_dssp             HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred             HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999988765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.07  E-value=3.2e-10  Score=98.66  Aligned_cols=89  Identities=13%  Similarity=0.009  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChH--HHHHHHHhhhhhCCCchHHHHHHHHHHHhcCC------h
Q 019475          249 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQ--EALGDAMQAQVVSPDWPTALYLQAACLFSLGM------E  320 (340)
Q Consensus       249 g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~------~  320 (340)
                      +++++++.+++++++.+|. |..+|+.|+.+..++|+++  ++++.++++++++|.+..||+.++.++..+++      +
T Consensus       124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence            7899999999999999999 9999999999999999998  99999999999999999999999999999998      9


Q ss_pred             HHHHHHHHHhhccccccc
Q 019475          321 NDARETLKDGTNLEAKKN  338 (340)
Q Consensus       321 ~~A~~~~~~al~l~~~~~  338 (340)
                      +++++.+++++++||.+.
T Consensus       203 ~eEl~~~~~aI~~~p~n~  220 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQNP  220 (306)
T ss_dssp             HHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHHHhCCCCc
Confidence            999999999999999753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.07  E-value=3.2e-11  Score=104.28  Aligned_cols=100  Identities=7%  Similarity=-0.064  Sum_probs=86.3

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchH--------
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT--------  305 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~--------  305 (340)
                      ....+..+|..+++.|+|++|+..|+++++++|+ +..+++++|.+|..+|++++|+..++++++++|++..        
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~  115 (281)
T 2c2l_A           37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS  115 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence            4567889999999999999999999999999999 9999999999999999999999999999999986521        


Q ss_pred             -----------------------HHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          306 -----------------------ALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       306 -----------------------a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                                             ....+|.  +..|++++|++.|++|++++|.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~  167 (281)
T 2c2l_A          116 ALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHED  167 (281)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccc
Confidence                                   1111222  2368999999999999999886

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.07  E-value=6e-10  Score=78.99  Aligned_cols=71  Identities=18%  Similarity=-0.020  Sum_probs=66.7

Q ss_pred             CCCCChhHhhhhhHHHHhcCC---hHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          265 GTMVSPTVYARRCLSYLMNDM---PQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       265 ~p~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +|+ ++.++..+|.+++..++   .++|...+++|++++|+++.+++.+|..++..|+|++|+..|+++++.+|.
T Consensus         2 ~p~-~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAV-TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCC-CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            578 99999999999987665   799999999999999999999999999999999999999999999999987

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.1e-09  Score=83.94  Aligned_cols=81  Identities=10%  Similarity=0.003  Sum_probs=76.1

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..++..|+|++|+..|+++++.+|+ +..+++++|.+|..+|++++|+..++++++++|++..++..++.+.
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            567888999999999999999999999999999 9999999999999999999999999999999999999998888775


Q ss_pred             Hh
Q 019475          315 FS  316 (340)
Q Consensus       315 ~~  316 (340)
                      ..
T Consensus       144 ~~  145 (148)
T 2dba_A          144 GP  145 (148)
T ss_dssp             CS
T ss_pred             hh
Confidence            44

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.06  E-value=3.2e-10  Score=88.06  Aligned_cols=105  Identities=10%  Similarity=0.020  Sum_probs=91.6

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCC-----CChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc---
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW---  303 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---  303 (340)
                      ...+..+...|..++..|++++|+..|++++++.+.     ....++.++|.+|..+|++++|+..+++++++.+..   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            345677888999999999999999999999976543     135689999999999999999999999999886553   


Q ss_pred             ---hHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          304 ---PTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       304 ---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                         ..+++.+|.++..+|++++|++.|++++++.++
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  121 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  121 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence               678999999999999999999999999987543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.05  E-value=4.1e-10  Score=97.57  Aligned_cols=101  Identities=10%  Similarity=-0.033  Sum_probs=91.8

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC--------CCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhC---
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG--------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS---  300 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~---  300 (340)
                      ...+..+...|..++..|++++|+..|++++++        .|. ...+++++|.+|..+|++++|+..+++++++.   
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  144 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            445667888999999999999999999999987        355 77899999999999999999999999999884   


Q ss_pred             -----CCchHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 019475          301 -----PDWPTALYLQAACLFSLGMENDARETLKDGTNL  333 (340)
Q Consensus       301 -----p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  333 (340)
                           |....+++.+|.++..+|++++|++.|++++++
T Consensus       145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 677889999999999999999999999999988

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.04  E-value=5.6e-10  Score=97.85  Aligned_cols=109  Identities=8%  Similarity=0.021  Sum_probs=98.1

Q ss_pred             hHHHHHHHhHHHhHhHHhhcC--CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCC-hHHHHHHHHhhhhhCCCchH
Q 019475          229 TSQMQETLNSKKHGDTAFRAK--DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPT  305 (340)
Q Consensus       229 ~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~  305 (340)
                      ...++....|..++..+...|  .+++++.+++++++.+|. |..+|++|+.+....|. ++++++.++++|+.+|.+..
T Consensus       102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S  180 (331)
T 3dss_A          102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  180 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence            334455667777888887777  499999999999999999 99999999999999999 69999999999999999999


Q ss_pred             HHHHHHHHHHhc--------------CChHHHHHHHHHhhccccccc
Q 019475          306 ALYLQAACLFSL--------------GMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       306 a~~~~g~~~~~~--------------~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ||+++|.++..+              +.++++++.+.+++.++|.+.
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~  227 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  227 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence            999999999988              579999999999999999864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.04  E-value=9.5e-10  Score=81.42  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..++..|++++|+..|+++++.+|. +..+++++|.+|..+|++++|+..++++++++|++..++..+|.++
T Consensus        43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            456778899999999999999999999999999 9999999999999999999999999999999999999999999998


Q ss_pred             HhcC
Q 019475          315 FSLG  318 (340)
Q Consensus       315 ~~~~  318 (340)
                      ..+|
T Consensus       122 ~~~g  125 (125)
T 1na0_A          122 QKQG  125 (125)
T ss_dssp             HHHC
T ss_pred             Hhcc
Confidence            8765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.03  E-value=1.5e-09  Score=95.54  Aligned_cols=116  Identities=8%  Similarity=-0.063  Sum_probs=101.2

Q ss_pred             chhhhhhhhHHHHHHHhHHHhHhHHhhcC-CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhc-C-ChHHHHHHHHhhh
Q 019475          221 NELSFQMWTSQMQETLNSKKHGDTAFRAK-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN-D-MPQEALGDAMQAQ  297 (340)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~al  297 (340)
                      .........-.+.....+..++..+...| .+++++..++++|..+|+ ++.+|+.|+.++..+ + +++++++.+++++
T Consensus        74 L~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           74 LELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            33334444444555667888998888888 599999999999999999 999999999999998 8 8999999999999


Q ss_pred             hhCCCchHHHHHHHHHHHhcCChH--------HHHHHHHHhhcccccc
Q 019475          298 VVSPDWPTALYLQAACLFSLGMEN--------DARETLKDGTNLEAKK  337 (340)
Q Consensus       298 ~l~p~~~~a~~~~g~~~~~~~~~~--------~A~~~~~~al~l~~~~  337 (340)
                      +++|++..||+.++.++..+|+++        ++++.++++++.||+.
T Consensus       153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N  200 (349)
T 3q7a_A          153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN  200 (349)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999998        9999999999999874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.03  E-value=8.4e-10  Score=102.34  Aligned_cols=106  Identities=8%  Similarity=-0.043  Sum_probs=88.8

Q ss_pred             hHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC-----CCC--CChhHhhhhhHHHHhcCChHHHHHHHHhhhhh--
Q 019475          229 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-----GTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV--  299 (340)
Q Consensus       229 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~-----~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--  299 (340)
                      ....+.+....+.+..+..+|+|++|+..|++++++     .|+  +-...++|+|.+|..+|+|++|+..+++++++  
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~  382 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM  382 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            334445566778888888999999999999999963     333  03467999999999999999999999999976  


Q ss_pred             ------CCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccc
Q 019475          300 ------SPDWPTALYLQAACLFSLGMENDARETLKDGTNLE  334 (340)
Q Consensus       300 ------~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  334 (340)
                            .|+-...++++|.+|..+|+|++|+..|++|+++-
T Consensus       383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          383 KLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                  34456689999999999999999999999999864

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.02  E-value=5.6e-10  Score=100.43  Aligned_cols=104  Identities=13%  Similarity=0.035  Sum_probs=93.0

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCC-----CChhHhhhhhHHHHhcCChHHHHHHHHhhhh-----hCCC
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQV-----VSPD  302 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----l~p~  302 (340)
                      ..+..+...|..+...|+|++|+..|.+|+++.+.     ....+++|+|.+|..+|++++|+..+++|++     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            34667788999999999999999999999986432     1356899999999999999999999999999     7888


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          303 WPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       303 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ...+++.+|.++..+|++++|+..|++++++-++
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.01  E-value=1.3e-09  Score=95.48  Aligned_cols=104  Identities=4%  Similarity=-0.130  Sum_probs=90.6

Q ss_pred             HHHHhHHHhHhHHhhcCC----------HHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCC--hHHHHHHHHhhhhhC
Q 019475          233 QETLNSKKHGDTAFRAKD----------FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM--PQEALGDAMQAQVVS  300 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~l~  300 (340)
                      .....+..++......|.          +.+++.+++++|..+|. ++.+|+.|+.++..+++  +++++..++++++++
T Consensus        62 ~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d  140 (331)
T 3dss_A           62 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD  140 (331)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC
Confidence            334456666666655444          78999999999999999 99999999999999994  899999999999999


Q ss_pred             CCchHHHHHHHHHHHhcCC-hHHHHHHHHHhhcccccc
Q 019475          301 PDWPTALYLQAACLFSLGM-ENDARETLKDGTNLEAKK  337 (340)
Q Consensus       301 p~~~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~~~~  337 (340)
                      |.+..||+.++.++..+|+ ++++++++.++++.||+.
T Consensus       141 prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N  178 (331)
T 3dss_A          141 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  178 (331)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999 599999999999999874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.00  E-value=1.7e-09  Score=79.19  Aligned_cols=81  Identities=10%  Similarity=-0.045  Sum_probs=75.8

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ....+...|..++..|++++|+..|+++++.+|. ++.+++++|.++..+|++++|+..++++++++|++..++..++.+
T Consensus        37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            3556788899999999999999999999999999 999999999999999999999999999999999999999999887


Q ss_pred             HH
Q 019475          314 LF  315 (340)
Q Consensus       314 ~~  315 (340)
                      ..
T Consensus       116 ~~  117 (118)
T 1elw_A          116 EA  117 (118)
T ss_dssp             HH
T ss_pred             hc
Confidence            53

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.98  E-value=2.2e-09  Score=91.78  Aligned_cols=98  Identities=20%  Similarity=0.122  Sum_probs=86.8

Q ss_pred             HHhHHHhHhHHhh----cCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCCCchHH
Q 019475          235 TLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTA  306 (340)
Q Consensus       235 ~~~~~~~g~~~~~----~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~a  306 (340)
                      ...+...|..+..    .+++++|+..|+++++.  . ++.+++++|.+|..    .+++++|+..++++++.+|  +.+
T Consensus       146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a  220 (273)
T 1ouv_A          146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--K-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGG  220 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHH
Confidence            4456677888887    89999999999999987  4 68899999999999    9999999999999999876  889


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHHHhhcccccc
Q 019475          307 LYLQAACLFS----LGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       307 ~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++.+|.+|..    .+++++|++.|++|++++|..
T Consensus       221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            9999999999    999999999999999998874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.98  E-value=2.2e-09  Score=88.58  Aligned_cols=95  Identities=15%  Similarity=-0.026  Sum_probs=73.2

Q ss_pred             HHhHHHhHhHHhhcC----CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCC--Cch
Q 019475          235 TLNSKKHGDTAFRAK----DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSP--DWP  304 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g----~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p--~~~  304 (340)
                      ...+...|..+.. +    ++++|+..|++|++  +. ++.+++++|.+|..    .+++++|+..+++|++..|  +++
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  125 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AG-SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV  125 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TT-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH
Confidence            4456667777766 5    78888888888855  45 77788888888877    7788888888888888877  458


Q ss_pred             HHHHHHHHHHHh----cCChHHHHHHHHHhhcc
Q 019475          305 TALYLQAACLFS----LGMENDARETLKDGTNL  333 (340)
Q Consensus       305 ~a~~~~g~~~~~----~~~~~~A~~~~~~al~l  333 (340)
                      .+++++|.+|..    .+++++|+..|++|+++
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            888888888888    77888888888888776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.97  E-value=2.9e-09  Score=93.72  Aligned_cols=89  Identities=10%  Similarity=-0.054  Sum_probs=84.2

Q ss_pred             cCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcC-ChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhc-C-ChHHHH
Q 019475          248 AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWPTALYLQAACLFSL-G-MENDAR  324 (340)
Q Consensus       248 ~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~-~-~~~~A~  324 (340)
                      .+..++|++.++++|.++|+ +..+|+.|+.++..+| .+++++..+++++..+|++..+|+.++.++..+ + ++++++
T Consensus        67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence            34557999999999999999 9999999999999999 599999999999999999999999999999998 8 999999


Q ss_pred             HHHHHhhcccccc
Q 019475          325 ETLKDGTNLEAKK  337 (340)
Q Consensus       325 ~~~~~al~l~~~~  337 (340)
                      +.+.++|++||+.
T Consensus       146 ~~~~k~L~~dpkN  158 (349)
T 3q7a_A          146 EYIHGSLLPDPKN  158 (349)
T ss_dssp             HHHHHHTSSCTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999999974

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.97  E-value=1.9e-09  Score=98.47  Aligned_cols=98  Identities=11%  Similarity=-0.062  Sum_probs=83.0

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhc-----CCCCCC---hhHhhhhhHHHHhcCChHHHHHHHHhhhhh--------C
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFID-----GGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVV--------S  300 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~-----~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------~  300 (340)
                      ...+.+......|+|++|+..|+++++     +.|+ +   +..+.|+|.+|..+|+|++|+..+++++++        .
T Consensus       300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  378 (433)
T 3qww_A          300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS  378 (433)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            445555666677999999999999996     3444 4   467999999999999999999999999976        4


Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          301 PDWPTALYLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       301 p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      |+-...++++|.+|..+|+|++|+..|++|+++-.
T Consensus       379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            55566899999999999999999999999998743

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.97  E-value=3e-09  Score=77.17  Aligned_cols=79  Identities=11%  Similarity=-0.029  Sum_probs=71.2

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCC-------CCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG-------TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA  306 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~-------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a  306 (340)
                      ++.+....|..++..|+|..|+..|++|++..       +. ...++.++|.||.++|++++|+..++++++++|++..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~-~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTID-KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCccc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            35678899999999999999999999999753       33 67899999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 019475          307 LYLQAAC  313 (340)
Q Consensus       307 ~~~~g~~  313 (340)
                      ..+++..
T Consensus        83 ~~n~~~~   89 (104)
T 2v5f_A           83 NGNLKYF   89 (104)
T ss_dssp             HHHHHHH
T ss_pred             HhhHHHH
Confidence            8888743

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.96  E-value=8.5e-10  Score=99.30  Aligned_cols=101  Identities=11%  Similarity=0.007  Sum_probs=72.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChh------HhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc-----
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT------VYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-----  303 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----  303 (340)
                      +..+...|..++..|++++|+..|++++++.+. ...      ++.++|.+|..+|++++|+..+++++++.|+.     
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  265 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV  265 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence            445666777777777777777777777766554 332      77777777777777777777777777776655     


Q ss_pred             -hHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          304 -PTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       304 -~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                       ..+++.+|.++..+|++++|+..|++++++.++
T Consensus       266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence             667777777777777777777777777776544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.95  E-value=9e-10  Score=99.72  Aligned_cols=102  Identities=13%  Similarity=0.035  Sum_probs=82.9

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChh------HhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc----
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPT------VYARRCLSYLMNDMPQEALGDAMQAQVVSPDW----  303 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----  303 (340)
                      .+..+...|..++..|++++|+..|++++++.+. ...      +++++|.+|..+|++++|+..+++++++.|+.    
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  300 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE  300 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            3446677888888888888888888888887765 433      78888888888888888888888888887754    


Q ss_pred             --hHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          304 --PTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       304 --~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                        ..+++.+|.++..+|++++|+..|++++++.++
T Consensus       301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence              678888888888888888888888888887654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.94  E-value=5.3e-09  Score=78.34  Aligned_cols=84  Identities=13%  Similarity=-0.014  Sum_probs=74.0

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC---hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      ..+...|..++..|+|++|+..|+++++.+|+ +   +.+++++|.+|..+|++++|+..++++++..|++..+...+..
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            46778899999999999999999999999999 8   8889999999999999999999999999999999988877776


Q ss_pred             HHHhcCCh
Q 019475          313 CLFSLGME  320 (340)
Q Consensus       313 ~~~~~~~~  320 (340)
                      +-...++.
T Consensus       119 l~~l~~~~  126 (129)
T 2xev_A          119 LQSIRLGQ  126 (129)
T ss_dssp             HHHHC---
T ss_pred             HHHHHhhh
Confidence            66555543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.94  E-value=4.3e-09  Score=86.76  Aligned_cols=100  Identities=11%  Similarity=-0.078  Sum_probs=89.2

Q ss_pred             HHhHHHhHhHHhh----cCCHHHHHHHHHhhhcCCC--CCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCCCch
Q 019475          235 TLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGT--MVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWP  304 (340)
Q Consensus       235 ~~~~~~~g~~~~~----~g~~~~A~~~~~~ai~~~p--~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~  304 (340)
                      ...+...|..+..    .+++++|+..|++|++..+  . ++.+++++|.+|..    .+++++|+..|++|+++ |.++
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~  162 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA-AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG  162 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH-HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH
Confidence            4466777888877    8899999999999999988  4 59999999999999    89999999999999999 7789


Q ss_pred             HHHHHHHHHHHhc-C-----ChHHHHHHHHHhhccccc
Q 019475          305 TALYLQAACLFSL-G-----MENDARETLKDGTNLEAK  336 (340)
Q Consensus       305 ~a~~~~g~~~~~~-~-----~~~~A~~~~~~al~l~~~  336 (340)
                      .+++++|.+|... |     ++++|+..|++|++....
T Consensus       163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            9999999999764 3     999999999999988654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.94  E-value=1.7e-09  Score=79.76  Aligned_cols=83  Identities=11%  Similarity=-0.034  Sum_probs=71.4

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc--hHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQAA  312 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g~  312 (340)
                      ...+...|..++..|++++|+..|+++++++|+ +..+|+++|.+|..+|++++|+..++++++++|+.  ..+...+..
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~   97 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQV   97 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            456788899999999999999999999999999 99999999999999999999999999999999854  344455555


Q ss_pred             HHHhcC
Q 019475          313 CLFSLG  318 (340)
Q Consensus       313 ~~~~~~  318 (340)
                      .+..++
T Consensus        98 ~l~~l~  103 (115)
T 2kat_A           98 FLRRLA  103 (115)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            554444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.92  E-value=2e-09  Score=87.33  Aligned_cols=101  Identities=12%  Similarity=0.031  Sum_probs=92.2

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhc------CCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhh---CC----
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFID------GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV---SP----  301 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l---~p----  301 (340)
                      +..+...|..++..|++++|+..|+++++      ..+. ...+++++|.+|..+|++++|+..+++++++   .+    
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA-EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            56677889999999999999999999998      8999 9999999999999999999999999999998   44    


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          302 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       302 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ....+++++|.++..+|++++|+..|++++++.++
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  139 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ  139 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            34668999999999999999999999999987543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.92  E-value=2.6e-09  Score=96.04  Aligned_cols=96  Identities=15%  Similarity=0.104  Sum_probs=45.8

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCC-----CChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC-------chH
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD-------WPT  305 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-------~~~  305 (340)
                      +..+|..++..|+|++|+..|++|+++.+.     ..+.+++++|.+|..+|++++|+..+++|+++.+.       ...
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            344455555555555555555555543221     02344555555555555555555555555544221       123


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTNL  333 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~l  333 (340)
                      +++++|.++..+|++++|++.|++|+++
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~  211 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALEL  211 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4445555555555555555555555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.91  E-value=2.8e-09  Score=81.67  Aligned_cols=87  Identities=8%  Similarity=-0.001  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcC---ChHHHHHHHHhhhhhC-C-CchHHHHHHHHHHHhcCChHHHH
Q 019475          250 DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVS-P-DWPTALYLQAACLFSLGMENDAR  324 (340)
Q Consensus       250 ~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~a~~~~g~~~~~~~~~~~A~  324 (340)
                      ....+.+.|.+.++.++. +..+.++.|.++.+.+   ++++++..++..++.+ | +..+++|++|.+++.+|+|++|.
T Consensus        13 ~l~~~~~~y~~e~~~~~~-~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            445677777777777776 8888888888888877   6668888888888887 6 56788888888888888888888


Q ss_pred             HHHHHhhcccccc
Q 019475          325 ETLKDGTNLEAKK  337 (340)
Q Consensus       325 ~~~~~al~l~~~~  337 (340)
                      +.++++|+++|..
T Consensus        92 ~y~~~lL~ieP~n  104 (152)
T 1pc2_A           92 KYVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHhcCCCC
Confidence            8888888888864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.88  E-value=1.9e-09  Score=93.96  Aligned_cols=98  Identities=11%  Similarity=0.014  Sum_probs=53.7

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh------hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc------h
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP------TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW------P  304 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~  304 (340)
                      .+...|..++..|++++|+..|++++++.+. ..      .++.++|.+|..+|++++|+..+++++++.++.      .
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            4455555555555555666555555554333 21      255555555555555555555555555554433      4


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          305 TALYLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       305 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      .+++.+|.++..+|++++|+..|++++++.+
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.88  E-value=4.8e-09  Score=95.83  Aligned_cols=99  Identities=12%  Similarity=0.028  Sum_probs=84.1

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcC-----CCCCC---hhHhhhhhHHHHhcCChHHHHHHHHhhhhh-------
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-----GTMVS---PTVYARRCLSYLMNDMPQEALGDAMQAQVV-------  299 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~-----~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------  299 (340)
                      +..+......+.++|+|++|+..|++++++     .|+ +   ...+.|+|.+|..+|+|++|+..+++++++       
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            445556666788899999999999999964     333 4   467999999999999999999999999966       


Q ss_pred             -CCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccc
Q 019475          300 -SPDWPTALYLQAACLFSLGMENDARETLKDGTNLE  334 (340)
Q Consensus       300 -~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  334 (340)
                       .|+-...++++|.+|..+|++++|+..|++|+++-
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence             34455689999999999999999999999999864

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.87  E-value=1.3e-08  Score=89.62  Aligned_cols=101  Identities=13%  Similarity=0.077  Sum_probs=81.0

Q ss_pred             HHhHHHhHhHHhhcC---CHHHHHHHHHhhhcCCCCCChhHhhhhhH---------------------------------
Q 019475          235 TLNSKKHGDTAFRAK---DFSTAIDCYTQFIDGGTMVSPTVYARRCL---------------------------------  278 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g---~~~~A~~~~~~ai~~~p~~~~~~~~~~~~---------------------------------  278 (340)
                      +..+.-+|..++..+   ++.+|+.+|++||+++|+ ++.+|..++.                                 
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            445566666665443   457888888888888887 7666654443                                 


Q ss_pred             -----------HHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          279 -----------SYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       279 -----------~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                                 ++...|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|++|+.++|..
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                       444479999999999999999986 6788999999999999999999999999999974

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.87  E-value=5.8e-09  Score=89.01  Aligned_cols=95  Identities=9%  Similarity=0.083  Sum_probs=84.8

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc--hHHHHHHHHHHH
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW--PTALYLQAACLF  315 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g~~~~  315 (340)
                      ....+..+...|+|++|.+.|+.++...|. +. +++.+|.++++.++|++|+..++++++..+..  ..+++++|.++.
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence            455677889999999999999999999998 78 99999999999999999999999998864332  458999999999


Q ss_pred             hcCChHHHHHHHHHhhccc
Q 019475          316 SLGMENDARETLKDGTNLE  334 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~  334 (340)
                      .+|++++|+..|++++.-.
T Consensus       183 ~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTST
T ss_pred             HCCCHHHHHHHHHHHhcCC
Confidence            9999999999999998543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.84  E-value=2.5e-08  Score=76.29  Aligned_cols=91  Identities=9%  Similarity=-0.080  Sum_probs=83.9

Q ss_pred             hHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh
Q 019475          241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  316 (340)
Q Consensus       241 ~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  316 (340)
                      .|..+...+..++|+..|++|.+.  . ++.+++++|.+|..    .+++++|+..|++|.+.  .++.+++++|.+|..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--N-SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            677777778899999999999987  5 89999999999999    89999999999999987  689999999999999


Q ss_pred             ----cCChHHHHHHHHHhhccccc
Q 019475          317 ----LGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       317 ----~~~~~~A~~~~~~al~l~~~  336 (340)
                          .+++++|+..|++|.+++..
T Consensus       106 G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A          106 GKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             CCCCCcCHHHHHHHHHHHHHCCCH
Confidence                99999999999999988654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.83  E-value=6.3e-09  Score=77.63  Aligned_cols=69  Identities=19%  Similarity=0.073  Sum_probs=66.1

Q ss_pred             ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          269 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .+..++++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            567899999999999999999999999999999999999999999999999999999999999998864

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.76  E-value=2.7e-08  Score=93.61  Aligned_cols=103  Identities=8%  Similarity=-0.134  Sum_probs=86.2

Q ss_pred             HHHHhHHHhHhHHhh-------cCCHH-------HHHHHHHhhhc-CCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhh
Q 019475          233 QETLNSKKHGDTAFR-------AKDFS-------TAIDCYTQFID-GGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQ  297 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~-------~g~~~-------~A~~~~~~ai~-~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  297 (340)
                      .....+...|..+.+       .|+++       +|+..|++|++ ++|+ +..+|.++|..+.+.|++++|...|++++
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~al  348 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLL  348 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            345567777777765       68876       89999999997 7898 99999999999999999999999999999


Q ss_pred             hhCCCch-HHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          298 VVSPDWP-TALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       298 ~l~p~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +++|+++ .+|...|.++..+|++++|.+.|++|++..|.
T Consensus       349 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          349 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             CccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            9999875 68888888888888888888888888877654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.72  E-value=2e-08  Score=89.77  Aligned_cols=98  Identities=17%  Similarity=0.097  Sum_probs=86.6

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCC--------CCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc-----h
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGG--------TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-----P  304 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~--------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----~  304 (340)
                      +...|..++..|++++|+..|++++++.        |. ...++.++|.+|..+|++++|...+++++.+.|..     .
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM-HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            5678889999999999999999999765        33 45678899999999999999999999999999863     4


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          305 TALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       305 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .+++.+|.++...|++++|...+++++++.+.
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGN  206 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            68899999999999999999999999988654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.69  E-value=6.2e-08  Score=86.56  Aligned_cols=98  Identities=10%  Similarity=0.078  Sum_probs=57.6

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcC------CCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhC--------CC
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDG------GTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS--------PD  302 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~  302 (340)
                      .+...|..++..|++++|+..|++++++      ... ...+++++|.++..+|++++|+..+++++++.        |.
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  133 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  133 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence            3444555566666666666666666532      234 45556666666666666666666666666553        23


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          303 WPTALYLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       303 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      ...++..+|.++..+|++++|...|++++++.+
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A          134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            344555666666666666666666666665544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.66  E-value=7.7e-08  Score=90.45  Aligned_cols=100  Identities=10%  Similarity=-0.029  Sum_probs=55.6

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh-hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH-
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC-  313 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~-  313 (340)
                      ..+...|..+.+.|++++|+..|++++++.|. ++ .+|.++|.++.++|++++|...|++|++..|.....+...|.+ 
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~  400 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  400 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            34555566666667777777777777777776 54 4666666655555555555555555555544444444433333 


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +..+|++++|...|+++++++|+
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~p~  423 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKYGD  423 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCChhHHHHHHHHHHHHCCC
Confidence            22345555555555555554443

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.64  E-value=1.5e-08  Score=90.40  Aligned_cols=50  Identities=18%  Similarity=0.252  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCC----------eEEecccCcccC
Q 019475            5 MRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGN----------PRLSSFGLMKNS   55 (340)
Q Consensus         5 ~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~----------~kl~Dfg~~~~~   55 (340)
                      ....++.||+.+|.+||+.| ||||||||.|||++.+|.          +.|+||+.+...
T Consensus       206 ~~~~l~~qll~~l~~lH~~g-IVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          206 DPASLYADLIALILRLAKHG-LIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT-EECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHHHHHCC-CcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccC
Confidence            34578899999999999999 999999999999988773          899999987653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.64  E-value=8.8e-08  Score=69.29  Aligned_cols=69  Identities=12%  Similarity=-0.133  Sum_probs=62.9

Q ss_pred             ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhC-------CCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          269 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVS-------PDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++.-.+.+|..++.+|+|..|+..+++|++..       +..+..+..+|.+++.+|++++|+..++++++++|..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            45677899999999999999999999999863       4567899999999999999999999999999999974

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.58  E-value=1.9e-07  Score=86.08  Aligned_cols=93  Identities=11%  Similarity=0.025  Sum_probs=51.3

Q ss_pred             hHHHhHhHHhhcC---CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhc----CChHHHHHHHHhhhhhCCCchHHHHH
Q 019475          237 NSKKHGDTAFRAK---DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN----DMPQEALGDAMQAQVVSPDWPTALYL  309 (340)
Q Consensus       237 ~~~~~g~~~~~~g---~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~  309 (340)
                      .+...|..+...|   ++++|+..|+++++..|. .+..++++|.+|...    +++++|+..|+++.   |+++.++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~  253 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS  253 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence            3444555555555   555555555555555555 555555555555444    45555555555555   555555555


Q ss_pred             HHHH-H--HhcCChHHHHHHHHHhhcc
Q 019475          310 QAAC-L--FSLGMENDARETLKDGTNL  333 (340)
Q Consensus       310 ~g~~-~--~~~~~~~~A~~~~~~al~l  333 (340)
                      +|.+ +  ...+++++|++.|++|++.
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence            5555 3  3455555555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.57  E-value=1.5e-07  Score=79.66  Aligned_cols=89  Identities=12%  Similarity=0.018  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHhhhcCCCC-CChhHhhhhhHHHHhc-----CChHHHHHHHHhhhhhCCCc-hHHHHHHHHHHHh-cCCh
Q 019475          249 KDFSTAIDCYTQFIDGGTM-VSPTVYARRCLSYLMN-----DMPQEALGDAMQAQVVSPDW-PTALYLQAACLFS-LGME  320 (340)
Q Consensus       249 g~~~~A~~~~~~ai~~~p~-~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~l~p~~-~~a~~~~g~~~~~-~~~~  320 (340)
                      +...+|...+++||+++|+ .+..+|..+|..|...     |+.++|.+.|++|++++|+. ..+++..|..|.. +|++
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            3567899999999999998 2356999999999996     99999999999999999975 9999999999988 5999


Q ss_pred             HHHHHHHHHhhcccccc
Q 019475          321 NDARETLKDGTNLEAKK  337 (340)
Q Consensus       321 ~~A~~~~~~al~l~~~~  337 (340)
                      ++|.+.+++|+..+|..
T Consensus       257 ~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          257 AGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHcCCCCC
Confidence            99999999999999983

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.57  E-value=3.2e-07  Score=85.36  Aligned_cols=95  Identities=11%  Similarity=-0.019  Sum_probs=83.3

Q ss_pred             HhHHHhHhHHhhcC---CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCCCchHHHH
Q 019475          236 LNSKKHGDTAFRAK---DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALY  308 (340)
Q Consensus       236 ~~~~~~g~~~~~~g---~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~  308 (340)
                      ..+...|..++..|   ++++|+..|+++++.  . ++.+++++|.+|..    .+++++|+..|++|++..  ++.+++
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~  403 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G-EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV  403 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence            35566777777655   899999999999987  5 78999999999999    899999999999998864  689999


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHhhcccc
Q 019475          309 LQAACLFS----LGMENDARETLKDGTNLEA  335 (340)
Q Consensus       309 ~~g~~~~~----~~~~~~A~~~~~~al~l~~  335 (340)
                      ++|.+|..    .+++++|+..|++|++.++
T Consensus       404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            99999998    8999999999999999984

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.54  E-value=1.3e-07  Score=87.62  Aligned_cols=100  Identities=10%  Similarity=-0.001  Sum_probs=84.6

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC-----CCC--CChhHhhhhhHHHHhcCChHHHHHHHHhhhhh-----C
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-----GTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-----S  300 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~-----~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~  300 (340)
                      ..+..+...|..+..+|+|++|+..|+++|++     -|+  +-+..++|+|.+|..+|+|++|+..+++|+++     -
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG  428 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG  428 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34556788899999999999999999999953     333  03567999999999999999999999999966     4


Q ss_pred             CCc---hHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 019475          301 PDW---PTALYLQAACLFSLGMENDARETLKDGTN  332 (340)
Q Consensus       301 p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~  332 (340)
                      |++   .+..-.++.++..+++|++|...|+++.+
T Consensus       429 ~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          429 PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555   44667899999999999999999999865

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.49  E-value=2.4e-07  Score=70.91  Aligned_cols=81  Identities=12%  Similarity=-0.029  Sum_probs=70.7

Q ss_pred             HHHhHHHhHhHHhhcC---CHHHHHHHHHhhhcCC-CCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHH
Q 019475          234 ETLNSKKHGDTAFRAK---DFSTAIDCYTQFIDGG-TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYL  309 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g---~~~~A~~~~~~ai~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  309 (340)
                      +....++.|-.+.+.+   +.+++|..++..++.+ |..+..++|++|..|+++|+|++|.+.++++++++|++.+|..-
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3456778888888877   7889999999999998 73278999999999999999999999999999999999999877


Q ss_pred             HHHHH
Q 019475          310 QAACL  314 (340)
Q Consensus       310 ~g~~~  314 (340)
                      +-.+-
T Consensus       111 k~~ie  115 (152)
T 1pc2_A          111 ERLID  115 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.49  E-value=2.8e-07  Score=65.08  Aligned_cols=70  Identities=7%  Similarity=-0.111  Sum_probs=61.9

Q ss_pred             HHhHHHhHhHHhhcCC---HHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchH
Q 019475          235 TLNSKKHGDTAFRAKD---FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPT  305 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~---~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~  305 (340)
                      ...+...|..++..++   ..+|...+++|++++|+ ++.+++.+|..++..|+|++|+..++++++.+|..+.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            4566777888865544   79999999999999999 9999999999999999999999999999999998433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.47  E-value=5.3e-07  Score=68.76  Aligned_cols=80  Identities=14%  Similarity=0.003  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh----cCChHHHH
Q 019475          249 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS----LGMENDAR  324 (340)
Q Consensus       249 g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~----~~~~~~A~  324 (340)
                      +++++|+..|+++.+.... .+.    +|.+|...+.+++|+..|++|.+.  .++.+++++|.+|..    .+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4789999999999998654 443    999999999999999999999987  689999999999999    99999999


Q ss_pred             HHHHHhhcccc
Q 019475          325 ETLKDGTNLEA  335 (340)
Q Consensus       325 ~~~~~al~l~~  335 (340)
                      +.|++|.+.+.
T Consensus        82 ~~~~~Aa~~g~   92 (138)
T 1klx_A           82 QYYSKACGLND   92 (138)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHcCCC
Confidence            99999987643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.46  E-value=1.1e-06  Score=81.63  Aligned_cols=97  Identities=13%  Similarity=-0.028  Sum_probs=85.1

Q ss_pred             HHHHhHHHhHhHHhh----cCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCCCch
Q 019475          233 QETLNSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWP  304 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~  304 (340)
                      .....+...|..++.    .+++++|+..|+++++.  . ++.+++++|.+|..    .+++++|+..|++|.+.  +++
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~  147 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRD  147 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence            345677888988888    89999999999999875  5 78899999999998    88999999999999775  579


Q ss_pred             HHHHHHHHHHHh----cCChHHHHHHHHHhhccc
Q 019475          305 TALYLQAACLFS----LGMENDARETLKDGTNLE  334 (340)
Q Consensus       305 ~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~  334 (340)
                      .+++.+|.+|..    .+++++|++.|+++++.+
T Consensus       148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~  181 (490)
T 2xm6_A          148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG  181 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            999999999988    889999999999998764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.33  E-value=2.6e-06  Score=78.47  Aligned_cols=93  Identities=10%  Similarity=-0.098  Sum_probs=59.8

Q ss_pred             HHhHHHhHhH-H--hhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcC-----ChHHHHHHHHhhhhhCCCchHH
Q 019475          235 TLNSKKHGDT-A--FRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND-----MPQEALGDAMQAQVVSPDWPTA  306 (340)
Q Consensus       235 ~~~~~~~g~~-~--~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~l~p~~~~a  306 (340)
                      ...+...|.. +  ...|++++|+..|++|++.  . ++.+++++|.+|. .|     ++++|+..|++|.   |.++.+
T Consensus       248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A  320 (452)
T 3e4b_A          248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA  320 (452)
T ss_dssp             THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence            3445555555 2  3466777777777777643  3 5667777777776 34     6777777777776   667777


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHHHhhccc
Q 019475          307 LYLQAACLFS----LGMENDARETLKDGTNLE  334 (340)
Q Consensus       307 ~~~~g~~~~~----~~~~~~A~~~~~~al~l~  334 (340)
                      ++++|.+|..    ..++++|+..|++|.+.+
T Consensus       321 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          321 DYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            7777766665    336777777777766543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.32  E-value=9.4e-07  Score=80.33  Aligned_cols=99  Identities=8%  Similarity=0.020  Sum_probs=80.5

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh-----------------hHhhhhhHHHHhcCChHHHHHHHHhhhhh
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-----------------TVYARRCLSYLMNDMPQEALGDAMQAQVV  299 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~al~l  299 (340)
                      ...++|..+++.|+|++|++.|.++++..|. ..                 .++.++|.+|..+|++++|++.+.+++.+
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~   84 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSS-QSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY   84 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCC-SSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-cchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4567888899999999999999999998887 33                 25788999999999999999999999988


Q ss_pred             CCCchHH------HHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          300 SPDWPTA------LYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       300 ~p~~~~a------~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .+...++      ...+|.++...|++++|+..|+++++...+
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  127 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR  127 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            7765543      345677777888888888888888776554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.25  E-value=1.7e-06  Score=87.52  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=72.8

Q ss_pred             HhHHhhcCCHHHHHHHHHhhh--------------------cCC--CCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhh
Q 019475          242 GDTAFRAKDFSTAIDCYTQFI--------------------DGG--TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVV  299 (340)
Q Consensus       242 g~~~~~~g~~~~A~~~~~~ai--------------------~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l  299 (340)
                      |..+...|.|++|...|+++-                    +..  .+ .+.+|+++|.++...|++++|+..|.+|   
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn-~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN-EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            566666666666666665542                    222  34 6889999999999999999999999887   


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          300 SPDWPTALYLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       300 ~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                        +++.+|++.|.++.++|+|++|++.|+.|.+.++
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Confidence              8999999999999999999999999999998774

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.24  E-value=2.3e-06  Score=63.09  Aligned_cols=86  Identities=7%  Similarity=-0.003  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHH---HHHHHHhhhhhC-C-CchHHHHHHHHHHHhcCChHHHHH
Q 019475          251 FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQE---ALGDAMQAQVVS-P-DWPTALYLQAACLFSLGMENDARE  325 (340)
Q Consensus       251 ~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~a~~~~g~~~~~~~~~~~A~~  325 (340)
                      ...+.+.|.+++..++. +..+.++.|.++.+..+...   +|..++..++-+ | ..-+.+|.+|..++++|+|++|.+
T Consensus        17 l~~~~~~y~~e~~~~~~-s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34555566666655555 67777777777777665554   777777766665 4 455677777777777777777777


Q ss_pred             HHHHhhcccccc
Q 019475          326 TLKDGTNLEAKK  337 (340)
Q Consensus       326 ~~~~al~l~~~~  337 (340)
                      .++..|+.+|..
T Consensus        96 ~~~~lL~~eP~n  107 (126)
T 1nzn_A           96 YVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHCTTC
T ss_pred             HHHHHHHhCCCC
Confidence            777777777754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.22  E-value=5.2e-06  Score=84.14  Aligned_cols=90  Identities=11%  Similarity=0.031  Sum_probs=73.2

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC------------
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD------------  302 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------------  302 (340)
                      ...|.+.|..+.+.|++++|+..|.+|     + ++..|.+.|.++.++|+|++|++.+.+|++..++            
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----d-D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----D-DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence            446789999999999999999999887     6 8999999999999999999999999988866533            


Q ss_pred             ---------------chHHHHHHHHHHHhcCChHHHHHHHHHh
Q 019475          303 ---------------WPTALYLQAACLFSLGMENDARETLKDG  330 (340)
Q Consensus       303 ---------------~~~a~~~~g~~~~~~~~~~~A~~~~~~a  330 (340)
                                     +...++..|..++..|+|++|...|.+|
T Consensus      1179 Kl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1179 KTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             hhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence                           2235566777777777777777777665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.20  E-value=7.1e-06  Score=63.16  Aligned_cols=94  Identities=15%  Similarity=0.036  Sum_probs=77.5

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC---------hhHhhhhhHHHHhcCChHHHHHHHHhhhhhC---C-
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---------PTVYARRCLSYLMNDMPQEALGDAMQAQVVS---P-  301 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~---p-  301 (340)
                      ...++++...++..|.|+.|+-..+.++.+..+ +         +.+++.+|.+++..++|..|...|++||.+.   + 
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            446788888999999999999999998865433 3         3488999999999999999999999987542   1 


Q ss_pred             ---------------------CchHHHHHHHHHHHhcCChHHHHHHHHH
Q 019475          302 ---------------------DWPTALYLQAACLFSLGMENDARETLKD  329 (340)
Q Consensus       302 ---------------------~~~~a~~~~g~~~~~~~~~~~A~~~~~~  329 (340)
                                           ...+..|+++.||.+++++++|+..++.
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                                 1226789999999999999999998775

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.18  E-value=4.7e-06  Score=75.32  Aligned_cols=93  Identities=16%  Similarity=0.111  Sum_probs=74.9

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+...|..+++.|+|++|++.|++|     . ++..|...+.++...|+++.|...... |...|++   ...+...
T Consensus       147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~  216 (449)
T 1b89_A          147 NVSNFGRLASTLVHLGEYQAAVDGARKA-----N-STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINY  216 (449)
T ss_dssp             HTTCHHHHHHHHHTTTCHHHHHHHHHHH-----T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHH
T ss_pred             HhhhHHHHHHHHHHhccHHHHHHHHHHc-----C-CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHH
Confidence            4567888889999999999999999998     4 688888888888888888888665553 4455554   4457788


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      |...|++++|+..|++++.+|+.
T Consensus       217 Yek~G~~eEai~lLe~aL~le~a  239 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLERA  239 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSTTC
T ss_pred             HHHCCCHHHHHHHHHHHhCCcHH
Confidence            99999999999999999998854

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.08  E-value=1.9e-05  Score=68.22  Aligned_cols=99  Identities=9%  Similarity=-0.041  Sum_probs=53.4

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCC-----CCChhHhhhhhHHHHhcC--ChHHHHHHHHhhhhhCCCc--hH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGT-----MVSPTVYARRCLSYLMND--MPQEALGDAMQAQVVSPDW--PT  305 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p-----~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~l~p~~--~~  305 (340)
                      .+.....+..+.+.|+.+.|.+.+++..+.+|     ++...++..-|.+.+..|  ++++|+..|+++....|++  +.
T Consensus       136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~  215 (310)
T 3mv2_B          136 TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQL  215 (310)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHH
Confidence            33444455555666666666666666666655     202222222233344444  6666666666666655552  22


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      .+++   ++.++|++++|.+.++++++++|+
T Consensus       216 lLln---~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          216 GLLN---LHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             HHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             HHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence            3333   666666666666666666666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.04  E-value=9.5e-06  Score=73.63  Aligned_cols=98  Identities=7%  Similarity=-0.007  Sum_probs=82.6

Q ss_pred             HHhHhHHhhcCCHHHHHHHHHhhhcCCCC-----CChhHhhhhhHHHHhcCChHHHHHHHHhhhhh------CCCchHHH
Q 019475          239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV------SPDWPTAL  307 (340)
Q Consensus       239 ~~~g~~~~~~g~~~~A~~~~~~ai~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~~a~  307 (340)
                      ...|..+...|++++|+..|++++...+.     ..+.++.++|.+|..+|+|++|+..+++++..      +|....++
T Consensus        99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  178 (434)
T 4b4t_Q           99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH  178 (434)
T ss_dssp             HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence            34456666789999999999999865332     14678999999999999999999999999866      45567799


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          308 YLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       308 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ..+|.++..+|+|++|...|++++.+.++
T Consensus       179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          179 LLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999987654

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.94  E-value=2.5e-06  Score=74.23  Aligned_cols=78  Identities=15%  Similarity=0.138  Sum_probs=49.6

Q ss_pred             ceecccCCCCeEEcC--CCCeEEecccCcccCCCCCCcccCCcc---CCcccccc-----CCC---------CCccchhh
Q 019475           26 ALYHDLNAYRILFDK--DGNPRLSSFGLMKNSRDGKSYSTNLAF---TPPEYMRT-----GRV---------TPESVVYS   86 (340)
Q Consensus        26 iih~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~~~~~~~~y---~aPE~~~~-----~~~---------~~~~Di~s   86 (340)
                      ++|+|++|.||+++.  .+.+.|+||+.+....+.........+   ..|+....     +..         ....+.|+
T Consensus       193 ~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~~~~~  272 (304)
T 3sg8_A          193 LIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWS  272 (304)
T ss_dssp             EECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             eEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence            799999999999998  456789999988765432111111111   22322110     001         11258999


Q ss_pred             HHHHHHHHHhCCCCCCc
Q 019475           87 FGTMLLDLLSGKHIPPS  103 (340)
Q Consensus        87 lG~~~~el~~g~~~~~~  103 (340)
                      +|.++|.+.+|..++..
T Consensus       273 l~~~~~~~~~g~~~~~~  289 (304)
T 3sg8_A          273 FEKIIYGKEYGYMDWYE  289 (304)
T ss_dssp             HHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHH
Confidence            99999999999865433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.92  E-value=2.1e-05  Score=67.90  Aligned_cols=81  Identities=11%  Similarity=0.006  Sum_probs=41.7

Q ss_pred             HHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCC--CchHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 019475          254 AIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP--DWPTALYLQAACLFSLGMENDARETLKDGT  331 (340)
Q Consensus       254 A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al  331 (340)
                      |+..+++.++..+. +..+++.+|.++...|++++|++.+.++|..+|  ++.+++...+.++..+|+.+.|.+.+++..
T Consensus        85 a~~~l~~l~~~~~~-~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQN-SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44455555544333 333344555555555555555555555555554  455555555555555555555555555554


Q ss_pred             cccc
Q 019475          332 NLEA  335 (340)
Q Consensus       332 ~l~~  335 (340)
                      +.+|
T Consensus       164 ~~~~  167 (310)
T 3mv2_B          164 NAIE  167 (310)
T ss_dssp             HHSC
T ss_pred             hcCc
Confidence            4444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.90  E-value=5.2e-05  Score=64.22  Aligned_cols=78  Identities=10%  Similarity=-0.013  Sum_probs=65.3

Q ss_pred             Hhhh-cCCCCCChhHhhhhhHHHHh---c--------CChHHHHHHHHhhhhhCCC--chHHHHHHHHHHHhc-----CC
Q 019475          259 TQFI-DGGTMVSPTVYARRCLSYLM---N--------DMPQEALGDAMQAQVVSPD--WPTALYLQAACLFSL-----GM  319 (340)
Q Consensus       259 ~~ai-~~~p~~~~~~~~~~~~~~~~---~--------~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~-----~~  319 (340)
                      .+++ +.+|+ +..+++..|.+...   .        +....|...+++|+++||+  +..+|..+|..|...     |+
T Consensus       141 ~~~l~~~~~~-dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd  219 (301)
T 3u64_A          141 HKVLSRCTRV-DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG  219 (301)
T ss_dssp             HHHHTTCCGG-GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred             HHHHHHcCcc-ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            3444 46777 89998888887654   2        2357899999999999999  666999999999996     99


Q ss_pred             hHHHHHHHHHhhcccccc
Q 019475          320 ENDARETLKDGTNLEAKK  337 (340)
Q Consensus       320 ~~~A~~~~~~al~l~~~~  337 (340)
                      .+.|.+.|++||+++|++
T Consensus       220 ~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          220 MEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            999999999999999964

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.82  E-value=1.8e-05  Score=71.49  Aligned_cols=80  Identities=14%  Similarity=0.034  Sum_probs=59.8

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ..+..-|+.++..|+|++|+..|+++         ..|..+|.|+.++|+|++|++.+++|     ++++.|-..+.++.
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             --------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            37888999999999999999999987         36889999999999999999999999     47899999999999


Q ss_pred             hcCChHHHHHHHHH
Q 019475          316 SLGMENDARETLKD  329 (340)
Q Consensus       316 ~~~~~~~A~~~~~~  329 (340)
                      ..|+++.|..+...
T Consensus       189 ~~~ef~lA~~~~l~  202 (449)
T 1b89_A          189 DGKEFRLAQMCGLH  202 (449)
T ss_dssp             HTTCHHHHHHTTTT
T ss_pred             HcCcHHHHHHHHHH
Confidence            99999999766553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.78  E-value=0.00011  Score=54.04  Aligned_cols=78  Identities=10%  Similarity=-0.074  Sum_probs=65.1

Q ss_pred             HhHHHhHhHHhhcCCHHH---HHHHHHhhhcCC-C-CCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFST---AIDCYTQFIDGG-T-MVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~---A~~~~~~ai~~~-p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      ...++.|-.+.+..+...   +|..++..+..+ | . .-...|.+|..++++|+|++|...++..|+++|+|.+|.--+
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            455666667776665555   999999999887 5 4 778999999999999999999999999999999999998776


Q ss_pred             HHHH
Q 019475          311 AACL  314 (340)
Q Consensus       311 g~~~  314 (340)
                      ..+-
T Consensus       115 ~~i~  118 (126)
T 1nzn_A          115 RLID  118 (126)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.75  E-value=3.9e-05  Score=69.96  Aligned_cols=85  Identities=12%  Similarity=-0.006  Sum_probs=66.2

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC-----CCC--CChhHhhhhhHHHHhcCChHHHHHHHHhhhhh-----C
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-----GTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-----S  300 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~-----~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~  300 (340)
                      ..+..+...|..+..+|+|++|+..|.++|++     -|+  +-+..++|+|.+|..+|+|++|+..+++|+++     -
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG  406 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG  406 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence            33556788889999999999999999999953     333  03467999999999999999999999999866     4


Q ss_pred             CCchH---HHHHHHHHHHhc
Q 019475          301 PDWPT---ALYLQAACLFSL  317 (340)
Q Consensus       301 p~~~~---a~~~~g~~~~~~  317 (340)
                      |+++.   .+.+++.++..+
T Consensus       407 ~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          407 REHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             TTSHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHH
Confidence            55544   556666666543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.71  E-value=5.2e-05  Score=69.10  Aligned_cols=73  Identities=10%  Similarity=0.038  Sum_probs=60.2

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC-----CCC--CChhHhhhhhHHHHhcCChHHHHHHHHhhhhh-----C
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG-----GTM--VSPTVYARRCLSYLMNDMPQEALGDAMQAQVV-----S  300 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~-----~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~  300 (340)
                      ..+..+...|..+..+|+|++|+..|+++|++     -|+  +-+..++|+|.+|..+|+|++|+..+++|+++     -
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG  417 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHG  417 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence            34556788999999999999999999999953     333  04567999999999999999999999999876     4


Q ss_pred             CCchH
Q 019475          301 PDWPT  305 (340)
Q Consensus       301 p~~~~  305 (340)
                      |+++.
T Consensus       418 ~~Hp~  422 (433)
T 3qww_A          418 KDHPY  422 (433)
T ss_dssp             TTCHH
T ss_pred             CCChH
Confidence            66654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.70  E-value=4.5e-05  Score=67.17  Aligned_cols=70  Identities=17%  Similarity=0.043  Sum_probs=60.1

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  307 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  307 (340)
                      ..+...|..++..|++++|+..+++|+.++|.  ..+|..+|.++...|++++|++.|++|+.++|....-+
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~  347 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY  347 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence            34445566667789999999999999999964  78889999999999999999999999999999876433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.53  E-value=0.0003  Score=51.93  Aligned_cols=80  Identities=5%  Similarity=-0.189  Sum_probs=58.4

Q ss_pred             HhHHHhHhHHhhcC---CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAK---DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       236 ~~~~~~g~~~~~~g---~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      ...++.|-.+.+..   +..++|..++..++..|...-..+|.+|..+.++|+|++|.+.++..+++.|+|.+|.--+..
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            45566666665543   456788888888877774256778888888888888888888888888888888887766655


Q ss_pred             HHH
Q 019475          313 CLF  315 (340)
Q Consensus       313 ~~~  315 (340)
                      +--
T Consensus       121 Ie~  123 (134)
T 3o48_A          121 VED  123 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.52  E-value=0.00077  Score=54.54  Aligned_cols=126  Identities=10%  Similarity=0.031  Sum_probs=79.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      |+.++++.++.|.+.+|.-+-. +. -..+=+.|..|++..+|.|.+.+ +.+.        .....+.+||... ...+
T Consensus        46 lsEEqaWALc~Qc~~~L~~~~~~~~-~~~~i~~~~~i~l~~dG~V~f~~-~~s~--------~~~~~~~~pe~~~-~~~t  114 (229)
T 2yle_A           46 INEEQAWAVCYQCCGSLRAAARRRQ-PRHRVRSAAQIRVWRDGAVTLAP-AADD--------AGEPPPVAGKLGY-SQCM  114 (229)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCSGGGEEEETTSCEEECC-C--------------------CCSS-SSSC
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhccc-CCceecCCcceEEecCCceeccc-cccc--------ccccCCCChhhcc-ccch
Confidence            5778999999999998876622 22 12334457899999999988764 2111        1123466888764 3445


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhccc---------------
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQS---------------  144 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~---------------  144 (340)
                      .+.=|||||+++|.-+--..+..                       .+...++++..||..|...               
T Consensus       115 e~~~IysLG~tLY~ALDygL~e~-----------------------eE~eLS~~LE~LL~~Mt~~~~d~~~~DeG~~~~~  171 (229)
T 2yle_A          115 ETEVIESLGIIIYKALDYGLKEN-----------------------EERELSPPLEQLIDHMANTVEADGSNDEGYEAAE  171 (229)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCTT-----------------------EEECCCHHHHHHHHHHTTCCC-------------
T ss_pred             HHHHHHHHHHHHHHHhhcCCCcc-----------------------cchhhCHHHHHHHHHHHhcccccccccccccccc
Confidence            67789999999999876553221                       1223456777888877654               


Q ss_pred             ----------CCCCCCCHHHHHHHHH
Q 019475          145 ----------EARERPNAKSLVISLM  160 (340)
Q Consensus       145 ----------~p~~Rps~~e~l~~l~  160 (340)
                                .+..|++..+|++.-.
T Consensus       172 eg~~d~~~~~~~~~~~sl~~Vi~~C~  197 (229)
T 2yle_A          172 EGLGDEDEKRKISAIRSYRDVMKLCA  197 (229)
T ss_dssp             -------CCSCCCCCCSHHHHHHHHH
T ss_pred             cccccccccccccCcCCHHHHHHHHH
Confidence                      3467788888887644

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.46  E-value=0.0017  Score=58.17  Aligned_cols=101  Identities=9%  Similarity=-0.006  Sum_probs=82.7

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC-------C--------------hhHhhhhhHHHHhcCChHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV-------S--------------PTVYARRCLSYLMNDMPQEAL  290 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~-------~--------------~~~~~~~~~~~~~~~~~~~A~  290 (340)
                      ......+..+|......|+..+|++.+++|+.+....       .              ..+...++.+++..|++.+|+
T Consensus       112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~  191 (388)
T 2ff4_A          112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            3344566677777778899999999999999875331       0              023445677888899999999


Q ss_pred             HHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhc
Q 019475          291 GDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTN  332 (340)
Q Consensus       291 ~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  332 (340)
                      ..+.+++..+|-+-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus       192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998643

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.46  E-value=0.00013  Score=64.85  Aligned_cols=54  Identities=9%  Similarity=0.028  Sum_probs=44.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhC---------------------------------------------------------C
Q 019475            2 KWAMRLRVALYLAQALEYCSSK---------------------------------------------------------G   24 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~---------------------------------------------------------~   24 (340)
                      +..++..++.+++..|..||+.                                                         .
T Consensus       137 ~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  216 (359)
T 3dxp_A          137 SPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLT  216 (359)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCC
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCc
Confidence            4567888999999999999972                                                         1


Q ss_pred             CceecccCCCCeEEcCCCC--eEEecccCcccC
Q 019475           25 RALYHDLNAYRILFDKDGN--PRLSSFGLMKNS   55 (340)
Q Consensus        25 ~iih~dlkp~Nil~~~~~~--~kl~Dfg~~~~~   55 (340)
                      .++|||+++.||+++.++.  +.|+||+.+...
T Consensus       217 ~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          217 SIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             EEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             eEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence            2899999999999997753  589999987643

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.44  E-value=0.00079  Score=50.34  Aligned_cols=79  Identities=5%  Similarity=-0.163  Sum_probs=52.0

Q ss_pred             HHhHHHhHhHHhhcC---CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAK---DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g---~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ....++.|-.+.+..   +-.++|..++..+...|...-...|.+|..++++|+|++|.+.++..|+++|+|.+|.--+.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            334556666665544   34567777777777666435567777777777777777777777777777777777665554


Q ss_pred             HH
Q 019475          312 AC  313 (340)
Q Consensus       312 ~~  313 (340)
                      .+
T Consensus       119 ~I  120 (144)
T 1y8m_A          119 MV  120 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.36  E-value=0.0001  Score=62.32  Aligned_cols=27  Identities=15%  Similarity=0.103  Sum_probs=23.5

Q ss_pred             ceecccCCCCeEEcCCCCeEEecccCc
Q 019475           26 ALYHDLNAYRILFDKDGNPRLSSFGLM   52 (340)
Q Consensus        26 iih~dlkp~Nil~~~~~~~kl~Dfg~~   52 (340)
                      ++|+|++|.||+++.++.+.|+||+.+
T Consensus       185 l~HgDl~~~Nil~~~~~~~~lIDwe~a  211 (263)
T 3tm0_A          185 FSHGDLGDSNIFVKDGKVSGFIDLGRS  211 (263)
T ss_dssp             EECSSCCTTSEEEETTEEEEECCCTTC
T ss_pred             EECCCCCcCcEEEECCcEEEEEEchhc
Confidence            899999999999987655679999875

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.36  E-value=0.00029  Score=52.02  Aligned_cols=86  Identities=8%  Similarity=-0.033  Sum_probs=69.7

Q ss_pred             HHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCC---hHHHHHHHHhhhhhCC-CchHHHHHHHHHHHhcCChHHHHHHH
Q 019475          252 STAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM---PQEALGDAMQAQVVSP-DWPTALYLQAACLFSLGMENDARETL  327 (340)
Q Consensus       252 ~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p-~~~~a~~~~g~~~~~~~~~~~A~~~~  327 (340)
                      ....+.|.+=+  .+.+.+..-++.|.++.+..+   ..++|..++..++..| ..-+.+|.+|..++++|+|++|.+..
T Consensus        24 ~~l~~qy~~E~--~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~  101 (134)
T 3o48_A           24 EILRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV  101 (134)
T ss_dssp             HHHHHHHHHTT--GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34445554433  344478899999988888764   5689999999999998 45779999999999999999999999


Q ss_pred             HHhhcccccccC
Q 019475          328 KDGTNLEAKKNK  339 (340)
Q Consensus       328 ~~al~l~~~~~~  339 (340)
                      +..|+.+|...|
T Consensus       102 d~lL~~eP~N~Q  113 (134)
T 3o48_A          102 DTLFEHERNNKQ  113 (134)
T ss_dssp             HHHHTTCTTCHH
T ss_pred             HHHHhhCCCCHH
Confidence            999999998544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.35  E-value=0.0015  Score=48.87  Aligned_cols=71  Identities=8%  Similarity=-0.001  Sum_probs=63.5

Q ss_pred             ChhHhhhhhHHHHhcCC---hHHHHHHHHhhhhhCC-CchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccccC
Q 019475          269 SPTVYARRCLSYLMNDM---PQEALGDAMQAQVVSP-DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKNK  339 (340)
Q Consensus       269 ~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p-~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~  339 (340)
                      .....++.|.++.+-.+   ..++|..++..+.-.| +.-+.+|.+|..++++|+|++|.+..+..|+.+|...|
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            78999999999998765   5689999999999998 56779999999999999999999999999999997543

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.19  E-value=0.0002  Score=60.25  Aligned_cols=28  Identities=11%  Similarity=0.058  Sum_probs=24.5

Q ss_pred             ceecccCCCCeEEcCCCCeEEecccCcc
Q 019475           26 ALYHDLNAYRILFDKDGNPRLSSFGLMK   53 (340)
Q Consensus        26 iih~dlkp~Nil~~~~~~~kl~Dfg~~~   53 (340)
                      ++|+|++|.||+++.++.+.|+|||.+.
T Consensus       186 l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          186 VTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             EECCCCCCCcEEEECCcEEEEEcchhcc
Confidence            8999999999999877666799999853

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.00  E-value=0.0018  Score=62.38  Aligned_cols=82  Identities=7%  Similarity=-0.053  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHH-HHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 019475          251 FSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEAL-GDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKD  329 (340)
Q Consensus       251 ~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~  329 (340)
                      .......|++||...|. ++.+|+..+..+...|+.++|. ..+++|+...|.....|+..+......|+++.|.+.|++
T Consensus       325 ~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            34567889999999999 9999999999999999999998 999999999999999999999999999999999999999


Q ss_pred             hhcc
Q 019475          330 GTNL  333 (340)
Q Consensus       330 al~l  333 (340)
                      +++.
T Consensus       404 ~l~~  407 (679)
T 4e6h_A          404 CIDR  407 (679)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9975

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.91  E-value=0.0044  Score=47.65  Aligned_cols=82  Identities=17%  Similarity=0.119  Sum_probs=61.4

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCC---CC---------------------CChhHhhhhhHHHHhcCChH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGG---TM---------------------VSPTVYARRCLSYLMNDMPQ  287 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~---p~---------------------~~~~~~~~~~~~~~~~~~~~  287 (340)
                      ......+.-.|+.+|..|+|..|+..|++||.+.   +.                     .+.++.|..|.||.++++++
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            3456678889999999999999999999997421   11                     02368899999999999999


Q ss_pred             HHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          288 EALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       288 ~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +||...+.. -..-..++....+|..|
T Consensus       140 ~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            999976653 22334566666666654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.58  E-value=0.0092  Score=57.46  Aligned_cols=97  Identities=7%  Similarity=-0.041  Sum_probs=76.4

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcC-CCCCChhHhhhhhHHHHhcC-ChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDG-GTMVSPTVYARRCLSYLMND-MPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~-~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      |...++-..+.|+.+.|...|.+|++. .+. ...+|...|..-.+.+ +++.|...|+++++..|+.+..+...+..+.
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI  515 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            444444445667888999999999887 333 5677777776666665 4899999999999999988888878888888


Q ss_pred             hcCChHHHHHHHHHhhcccc
Q 019475          316 SLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~~  335 (340)
                      ..|+.+.|...|++|++..+
T Consensus       516 ~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          516 YVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHTCHHHHHHHHHHHTTTSS
T ss_pred             hCCCHHHHHHHHHHHHHhcC
Confidence            88999999999999998776

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.48  E-value=0.012  Score=44.46  Aligned_cols=85  Identities=15%  Similarity=0.069  Sum_probs=70.6

Q ss_pred             HHHHHHHHhhhcCCCCCCh--------hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHH
Q 019475          252 STAIDCYTQFIDGGTMVSP--------TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDA  323 (340)
Q Consensus       252 ~~A~~~~~~ai~~~p~~~~--------~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A  323 (340)
                      +.-++.|++|+..-|. ..        -+|.+.|. +..+++.++|-+.|+.|+.+...+++.|...|..-..+|+...|
T Consensus        36 ~rlrd~YerAia~~Pp-~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kA  113 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPP-DKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKS  113 (161)
T ss_dssp             HHHHHHHHHHHHHSCG-GGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCc-cccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHH
Confidence            7888999999987775 32        23443443 35569999999999999999888999999999999999999999


Q ss_pred             HHHHHHhhccccccc
Q 019475          324 RETLKDGTNLEAKKN  338 (340)
Q Consensus       324 ~~~~~~al~l~~~~~  338 (340)
                      .+.+.+|+.+.|++.
T Consensus       114 RkILg~AiG~~~k~~  128 (161)
T 4h7y_A          114 KQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHHHHHHHHTTCBCH
T ss_pred             HHHHHHHhccCCCcH
Confidence            999999999998754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.0058  Score=59.09  Aligned_cols=59  Identities=15%  Similarity=0.019  Sum_probs=52.2

Q ss_pred             HhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHh
Q 019475          272 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG  330 (340)
Q Consensus       272 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a  330 (340)
                      ++.--+..++..|+|+-|+..+++|+.+-|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45555667777899999999999999999999999999999999999999999888766

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.16  E-value=0.0076  Score=52.63  Aligned_cols=30  Identities=7%  Similarity=0.066  Sum_probs=26.6

Q ss_pred             CCCceecccCCCCeEEcCCCCeEEecccCcc
Q 019475           23 KGRALYHDLNAYRILFDKDGNPRLSSFGLMK   53 (340)
Q Consensus        23 ~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~   53 (340)
                      .+ ++|+|+.+.||+++.++.+.|+||+.+.
T Consensus       222 ~~-l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PN-LCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CC-EECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             Cc-eecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            45 9999999999999888899999999753

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.01  Score=57.38  Aligned_cols=60  Identities=8%  Similarity=-0.073  Sum_probs=54.9

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhh
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA  296 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  296 (340)
                      .-+..++.=+..+|+|+.|+.+-++|+...|. +...|+.++.||.++|+|+.|+-..+-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            35667788788999999999999999999999 9999999999999999999999887766

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.72  E-value=0.035  Score=51.19  Aligned_cols=79  Identities=14%  Similarity=-0.025  Sum_probs=72.5

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  316 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  316 (340)
                      -+...|+.+.....+..|...|.+|+.+.|. +...|+.+|.+....|+.-+|+-+|-+++....-++.|.-++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5677888888888999999999999999999 999999999999999999999999999998887789999988888764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.53  E-value=0.13  Score=39.63  Aligned_cols=90  Identities=10%  Similarity=-0.006  Sum_probs=68.8

Q ss_pred             HhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhh--hh---------------CCC
Q 019475          240 KHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQ--VV---------------SPD  302 (340)
Q Consensus       240 ~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~l---------------~p~  302 (340)
                      -.+..++-.|+|..|+-.+.+.     + -....+-.+.||.++++|..|+...+..+  ++               +|.
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~l-----N-T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~  111 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHKL-----N-TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG  111 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTC-----C-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred             hhhhhhhhcchHhHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence            3456677889999888765432     3 45666668999999999999999999988  22               344


Q ss_pred             chHHH-HHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          303 WPTAL-YLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       303 ~~~a~-~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      +-+.+ ..+|..+.+.|+-+||+..|......++
T Consensus       112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence            44544 4569999999999999999998776654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.30  E-value=0.17  Score=46.76  Aligned_cols=94  Identities=14%  Similarity=0.065  Sum_probs=77.4

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhh--hCCCchHHHHHHHHHHH
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV--VSPDWPTALYLQAACLF  315 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~~g~~~~  315 (340)
                      +...-..+.+.|++++|++.|++..+..-..+...|..+=.+|.+.|+.++|.+.+++..+  +.|+ ...|..+-.++.
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~  186 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHh
Confidence            3344456778899999999999987643222588899999999999999999999998764  4665 678888999999


Q ss_pred             hcCChHHHHHHHHHhhc
Q 019475          316 SLGMENDARETLKDGTN  332 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~  332 (340)
                      ..|+.++|.+.|++.-+
T Consensus       187 ~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHH
Confidence            99999999999998654

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=95.27  E-value=0.025  Score=48.74  Aligned_cols=29  Identities=17%  Similarity=0.133  Sum_probs=24.4

Q ss_pred             ceecccCCCCeEEcC---CCCe-EEecccCccc
Q 019475           26 ALYHDLNAYRILFDK---DGNP-RLSSFGLMKN   54 (340)
Q Consensus        26 iih~dlkp~Nil~~~---~~~~-kl~Dfg~~~~   54 (340)
                      ++|+|++|.||+++.   ++.+ .|+||+.+..
T Consensus       192 ~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          192 LIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             EECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             eEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence            799999999999997   4565 7999997654

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=95.07  E-value=0.018  Score=52.10  Aligned_cols=32  Identities=9%  Similarity=0.140  Sum_probs=27.3

Q ss_pred             HhCCCceecccCCCCeEEcCCCCeEEecccCccc
Q 019475           21 SSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKN   54 (340)
Q Consensus        21 H~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~   54 (340)
                      +... ++|||++|.||+++.++ +.|+||+.+..
T Consensus       230 ~~~~-liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          230 RAQA-LIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             BCCE-EECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CCCe-EEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            4455 99999999999999776 99999998654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.89  E-value=0.11  Score=43.26  Aligned_cols=64  Identities=11%  Similarity=0.099  Sum_probs=58.9

Q ss_pred             HhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHH
Q 019475          242 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA  306 (340)
Q Consensus       242 g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a  306 (340)
                      ...+++.|+.++|++.....|+.+|. |+.....+-..+.-.|+|+.|+..++.+.+++|+....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            34678999999999999999999999 99999999999999999999999999999999986654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.76  E-value=0.083  Score=44.04  Aligned_cols=59  Identities=22%  Similarity=0.050  Sum_probs=56.2

Q ss_pred             HHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          278 LSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       278 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ...++.|+.++|++.+...++-+|.+......+-..|...|+++.|.+.++.+.+++|.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            35678899999999999999999999999999999999999999999999999999997

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.66  E-value=0.087  Score=48.52  Aligned_cols=62  Identities=10%  Similarity=-0.147  Sum_probs=56.0

Q ss_pred             HhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Q 019475          272 VYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNL  333 (340)
Q Consensus       272 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  333 (340)
                      .+..+|....-...+..|...|.+|+.+.|++..+|+.+|.+....|+.-+|+-.|-++|--
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            45567777777788899999999999999999999999999999999999999999998864

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.65  E-value=0.12  Score=46.13  Aligned_cols=92  Identities=9%  Similarity=-0.104  Sum_probs=72.7

Q ss_pred             HhHhHHhhcCCHHHHHHHHHhhhcCCCC-----CChhHhhhhhHHHHhcCChHHHHHHHHhhhhhC----CC---chHHH
Q 019475          240 KHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVS----PD---WPTAL  307 (340)
Q Consensus       240 ~~g~~~~~~g~~~~A~~~~~~ai~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~----p~---~~~a~  307 (340)
                      ..|..++..|+|.+|+..+++..+....     .-.++|..-..+|..++++.++-..+.+|....    ++   .+...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6788999999999999999988863222     134678888889999999999999999986543    21   22344


Q ss_pred             HHHHHHHH-hcCChHHHHHHHHHhh
Q 019475          308 YLQAACLF-SLGMENDARETLKDGT  331 (340)
Q Consensus       308 ~~~g~~~~-~~~~~~~A~~~~~~al  331 (340)
                      ..-|..+. ..++|.+|...|-.++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHH
Confidence            55688899 8999999999998886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-23
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-22
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-22
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-21
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-21
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-20
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-20
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-20
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	4e-20
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	6e-20
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	8e-20
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	9e-20
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-19
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-19
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-19
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	8e-19
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	9e-19
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-18
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-18
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-18
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-18
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	7e-18
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-18
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-17
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-17
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-17
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-17
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-16
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-15
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-15
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-15
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	5e-15
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-15
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	7e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-14
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-13
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-13
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-13
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-13
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	7e-13
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-13
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-12
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-12
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-12
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	4e-12
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-11
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-11
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-11
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-10
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-10
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	6e-10
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	7e-10
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	9e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-09
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-09
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-09
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-08
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-08
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-07
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	7e-06
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	9e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.003
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.004

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.3 bits (239), Expect = 1e-23
 Identities = 32/177 (18%), Positives = 73/177 (41%), Gaps = 10/177 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +   + L +A  ++ A+EY   K   ++ DL A   L  ++   +++ FGL +       
Sbjct: 112 VSAVVLLYMATQISSAMEYLEKKNF-IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY 170

Query: 61  YST-----NLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL 115
            +       + +T PE +   + + +S V++FG +L ++ +     P   +DL       
Sbjct: 171 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGM-SPYPGIDL---SQVY 226

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYV 172
            L++             ++  L   C Q    +RP+   +  +  ++ +E+ +   V
Sbjct: 227 ELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEV 283

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 5e-22
 Identities = 38/178 (21%), Positives = 78/178 (43%), Gaps = 18/178 (10%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL--MKNSRDG 58
            +    + +A   AQ ++Y  +K   ++ DL +  I   +D   ++  FGL  +K+   G
Sbjct: 101 FEMIKLIDIARQTAQGMDYLHAKSI-IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG 159

Query: 59  KSYSTNLAFTP----PEYMRT---GRVTPESVVYSFGTMLLDLLSGK----HIPPSHALD 107
                 L+ +     PE +R       + +S VY+FG +L +L++G+    +I     + 
Sbjct: 160 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII 219

Query: 108 LIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
            +  + +L    S +  +        + RL + CL+ +  ERP    ++ S+  L + 
Sbjct: 220 FMVGRGYLSPDLSKVRSNCPK----AMKRLMAECLKKKRDERPLFPQILASIELLARS 273

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (226), Expect = 6e-22
 Identities = 29/169 (17%), Positives = 67/169 (39%), Gaps = 10/169 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
                 L + L + + + Y       ++ DL A   L  ++   ++S FG+ +   D + 
Sbjct: 98  FAAETLLGMCLDVCEGMAYLEEAC-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 156

Query: 61  YSTN-----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL 115
            S+      + +  PE     R + +S V+SFG ++ ++ S   IP  +      +   +
Sbjct: 157 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN----RSNSEVV 212

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK 164
             + +    +      T + ++ + C +    +RP    L+  L  + +
Sbjct: 213 EDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE 261

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 2e-21
 Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
            +    L +   + +A+EY  SK   L+ DL A   L +  G  ++S FGL +   D + 
Sbjct: 97  FQTQQLLEMCKDVCEAMEYLESKQF-LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY 155

Query: 61  YSTN-----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL 115
            S+      + ++PPE +   + + +S +++FG ++ ++ S   +P         +    
Sbjct: 156 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYER----FTNSETA 211

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLM 160
             +   L  +  +    ++  +   C   +A ERP  K L+ +++
Sbjct: 212 EHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNIL 256

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 4e-21
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 11/176 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           ++    + +A  +A  + Y       ++ DL A  IL  ++   +++ FGL +   D + 
Sbjct: 110 LRLPQLVDMAAQIASGMAYVERMNY-VHRDLRAANILVGENLVCKVADFGLARLIEDNEY 168

Query: 61  YSTN-----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL 115
            +       + +T PE    GR T +S V+SFG +L +L +   +P    ++    +  L
Sbjct: 169 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN----REVL 224

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSY 171
             ++         +    L  L  +C + E  ERP  + L   L       E P Y
Sbjct: 225 DQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE-PQY 279

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 2e-20
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 12/166 (7%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNPRLSSFGLMKNSRDGK 59
           + +   L  A  +A+ +E+   K     H DL A  +L       ++  FGL ++     
Sbjct: 161 LTFEDLLCFAYQVAKGMEFLEFKS--CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDS 218

Query: 60  SYSTN------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
           +Y         + +  PE +  G  T +S V+S+G +L ++ S    P      +    N
Sbjct: 219 NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP---GIPVDAN 275

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
           F  L+ +  +         E+  +   C   ++R+RP+  +L   L
Sbjct: 276 FYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL 321

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 2e-20
 Identities = 27/173 (15%), Positives = 66/173 (38%), Gaps = 11/173 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +     L   + +A+ + Y   +   ++ DL A  +L     + +++ FGL K     + 
Sbjct: 108 IGSQYLLNWCVQIAKGMNYLEDRRL-VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK 166

Query: 61  YSTN------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
                     + +   E +     T +S V+S+G  + +L++    P     D I +   
Sbjct: 167 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPY----DGIPASEI 222

Query: 115 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAE 167
             +++             ++  +  +C   +A  RP  + L+I    + ++ +
Sbjct: 223 SSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQ 275

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 3e-20
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKN-SRDGK 59
           +     L+ +L + +A+EY       ++ DL A  +L  +D   ++S FGL K  S    
Sbjct: 100 LGGDCLLKFSLDVCEAMEYLEGNNF-VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD 158

Query: 60  SYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD 119
           +    + +T PE +R  + + +S V+SFG +L ++ S   +P       I  K+ +  ++
Sbjct: 159 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR----IPLKDVVPRVE 214

Query: 120 SALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK 164
              +    +     +  +   C   +A  RP+   L   L  ++ 
Sbjct: 215 KGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT 259

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 4e-20
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 21/168 (12%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH----DLNAYRILFDKDGNPRLSSFGLMKNSR 56
           +     LRV   L  AL+ C  +    +     DL    +  D   N +L  FGL +   
Sbjct: 106 LDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN 165

Query: 57  DGKSYSTNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKH----IPPSHALDL 108
              S++     TP    PE M       +S ++S G +L +L +                
Sbjct: 166 HDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGK 225

Query: 109 IRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           IR   F       +   +S+    EL  + +R L  +   RP+ + ++
Sbjct: 226 IREGKFR-----RIPYRYSD----ELNEIITRMLNLKDYHRPSVEEIL 264

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (213), Expect = 6e-20
 Identities = 33/173 (19%), Positives = 72/173 (41%), Gaps = 14/173 (8%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
                 + +   +A  ++Y +     ++ DL A  IL + +   ++S FGL +   D  S
Sbjct: 125 FTVIQLVGMLRGIAAGMKYLADMNY-VHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 183

Query: 61  YSTN---------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS 111
             T          + +T PE ++  + T  S V+S+G ++ +++S    P       + +
Sbjct: 184 DPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWD----MTN 239

Query: 112 KNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK 164
           ++ +  ++         D  + L +L   C Q +   RP    +V +L  + +
Sbjct: 240 QDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIR 292

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 8e-20
 Identities = 32/170 (18%), Positives = 69/170 (40%), Gaps = 8/170 (4%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +     L  A  +A+ ++Y S K   ++ DL A  IL  ++   +++ FGL +       
Sbjct: 124 LSSQQLLHFAADVARGMDYLSQKQF-IHRDLAARNILVGENYVAKIADFGLSRGQEVYVK 182

Query: 61  YSTN---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
            +     + +   E +     T  S V+S+G +L +++S    P       +        
Sbjct: 183 KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG----MTCAELYEK 238

Query: 118 MDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAE 167
           +          +   E+  L  +C + +  ERP+   +++SL  + +E +
Sbjct: 239 LPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK 288

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.1 bits (212), Expect = 9e-20
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 21/175 (12%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +  A +L +A  +A  + Y S +   ++ DL     L  ++   +++ FGL +N      
Sbjct: 137 LSCAEQLCIARQVAAGMAYLSERKF-VHRDLATRNCLVGENMVVKIADFGLSRNIYSADY 195

Query: 61  YSTN------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP-----PSHALDLI 109
           Y  +      + + PPE +   R T ES V+++G +L ++ S    P         +  +
Sbjct: 196 YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYV 255

Query: 110 RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQK 164
           R  N L   ++            EL  L   C      +RP+  S+   L  + +
Sbjct: 256 RDGNILACPENCPL---------ELYNLMRLCWSKLPADRPSFCSIHRILQRMCE 301

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 1e-19
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 9/158 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
                       LA AL YC SK   ++ D+    +L    G  +++ FG   ++   + 
Sbjct: 103 FDEQRTATYITELANALSYCHSKR-VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR 161

Query: 61  YSTN--LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLM 118
            +    L + PPE +       +  ++S G +  + L GK  PP  A             
Sbjct: 162 TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK--PPFEANTYQE----TYKR 215

Query: 119 DSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
            S +E  F +        L SR L+    +RP  + ++
Sbjct: 216 ISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVL 253

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 2e-19
 Identities = 32/174 (18%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
                 + +   +A  ++Y ++     + DL A  IL + +   ++S FGL +   D   
Sbjct: 107 FSVLQLVGMLRGIAAGMKYLANMNYV-HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE 165

Query: 61  YSTN-------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
            +         + +T PE +   + T  S V+SFG ++ ++++    P       + +  
Sbjct: 166 ATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWE----LSNHE 221

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAE 167
            +  ++         D  + + +L  +C Q E   RP    +V  L  L +  +
Sbjct: 222 VMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPD 275

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.2 bits (205), Expect = 6e-19
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +K    + +   ++  ++Y       ++ DL A  +L       ++S FGL K  R  ++
Sbjct: 104 VKDKNIIELVHQVSMGMKYLEESNF-VHRDLAARNVLLVTQHYAKISDFGLSKALRADEN 162

Query: 61  YSTN-------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
           Y          + +  PE +   + + +S V+SFG ++ +  S    P       ++   
Sbjct: 163 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG----MKGSE 218

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
              +++             E+  L + C   +   RP   ++ + L
Sbjct: 219 VTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL 264

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 8e-19
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 10/168 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +     +  +  +A+ +E+ +S+   ++ DL A  IL  +    ++  FGL ++      
Sbjct: 131 LTLEHLICYSFQVAKGMEFLASRK-CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 61  Y-STNLAFTPPEYM-----RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
           Y     A  P ++M          T +S V+SFG +L ++ S     P   + +   + F
Sbjct: 190 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA-SPYPGVKI--DEEF 246

Query: 115 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSL 162
              +         +    E+ +    C   E  +RP    LV  L +L
Sbjct: 247 CRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 294

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 9e-19
 Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 21/168 (12%)

Query: 3   WAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYS 62
            +  +++A  +A  + Y ++    ++ DL A   +  +D   ++  FG+ ++  +   Y 
Sbjct: 132 LSKMIQMAGEIADGMAYLNANKF-VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 190

Query: 63  TN------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP-----PSHALDLIRS 111
                   + +  PE ++ G  T  S V+SFG +L ++ +    P         L  +  
Sbjct: 191 KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME 250

Query: 112 KNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
              L   D+  +          L  L   C Q   + RP+   ++ S+
Sbjct: 251 GGLLDKPDNCPD---------MLFELMRMCWQYNPKMRPSFLEIISSI 289

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 1e-18
 Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 10/164 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +     L +A  +A+ + +   +   ++ DL A  IL     + +++ FGL +   D + 
Sbjct: 106 LTINKLLDMAAQIAEGMAFIEERNY-IHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 164

Query: 61  YSTN-----LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL 115
            +       + +T PE +  G  T +S V+SFG +L ++++   IP       + +   +
Sbjct: 165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG----MTNPEVI 220

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
             ++        ++   EL +L   C +    +RP    L   L
Sbjct: 221 QNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVL 264

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 1e-18
 Identities = 38/182 (20%), Positives = 80/182 (43%), Gaps = 13/182 (7%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
                 +   L +A+ +++ +SK   ++ DL A   + D+    +++ FGL ++  D + 
Sbjct: 127 PTVKDLIGFGLQVAKGMKFLASKKF-VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF 185

Query: 61  YSTN--------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK 112
            S +        + +   E ++T + T +S V+SFG +L +L++    PP   ++     
Sbjct: 186 DSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGA-PPYPDVNTFDIT 244

Query: 113 NFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEAEVPSYV 172
            +LL     L+  +  D    L  +  +C   +A  RP+   LV  + ++        YV
Sbjct: 245 VYLLQGRRLLQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYV 301

Query: 173 LL 174
            +
Sbjct: 302 HV 303

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (200), Expect = 3e-18
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 8/160 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILF-DKDGNPRLSSFGLMKNSRDG 58
           MK  +       + + L++  ++   + H DL    I      G+ ++   GL    R  
Sbjct: 109 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS 168

Query: 59  KSYST--NLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL 116
            + +      F  PE     +      VY+FG  +L++ + ++ P S   +   ++ +  
Sbjct: 169 FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEY-PYSECQN--AAQIYRR 224

Query: 117 LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
           +        F      E+  +   C++    ER + K L+
Sbjct: 225 VTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 264

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 3e-18
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 10/171 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +     L  +  +A+ + + +SK   ++ DL A  IL       ++  FGL ++ ++  +
Sbjct: 142 LDLEDLLSFSYQVAKGMAFLASKNC-IHRDLAARNILLTHGRITKICDFGLARDIKNDSN 200

Query: 61  Y-STNLAFTPPEYM-----RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
           Y     A  P ++M          T ES V+S+G  L +L S    P      +     F
Sbjct: 201 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG---MPVDSKF 257

Query: 115 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
             ++              E+  +   C  ++  +RP  K +V  +     E
Sbjct: 258 YKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 7e-18
 Identities = 26/205 (12%), Positives = 61/205 (29%), Gaps = 37/205 (18%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-------DLNAYRILFDKDGNPRLSSFGLMK 53
           +     +++AL  A  L +   +             DL +  IL  K+G   ++  GL  
Sbjct: 97  VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156

Query: 54  NSRDGKSY----STNLAFTP----PEYMRT------GRVTPESVVYSFGTMLLDLLSGKH 99
                         +   T     PE +              + +Y+ G +  ++     
Sbjct: 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCS 216

Query: 100 IPPSH---------------ALDLIRSKNFLLLMDSALEGHFSNDEGT-ELVRLASRCLQ 143
           I   H               +++ +R       +   +   + + E    + ++   C  
Sbjct: 217 IGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWY 276

Query: 144 SEARERPNAKSLVISLMSLQKEAEV 168
           +    R  A  +  +L  L ++  +
Sbjct: 277 ANGAARLTALRIKKTLSQLSQQEGI 301

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.4 bits (198), Expect = 7e-18
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 8/159 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           ++      V     Q L Y  S    ++ D+ A  IL  + G  +L  FG         S
Sbjct: 112 LQEVEIAAVTHGALQGLAYLHSHNM-IHRDVKAGNILLSEPGLVKLGDFGSASIMAPANS 170

Query: 61  YSTNLAFTPPEY---MRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
           +     +  PE    M  G+   +  V+S G   ++L   K    +              
Sbjct: 171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE 230

Query: 118 MDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
             +   GH+S             CLQ   ++RP ++ L+
Sbjct: 231 SPALQSGHWSE----YFRNFVDSCLQKIPQDRPTSEVLL 265

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 1e-17
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 40/195 (20%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +   +  +V++ + + L Y   K + ++ D+    IL +  G  +L  FG+     D  +
Sbjct: 101 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 160

Query: 61  YST--NLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKH-IPPSHALDLIRSKNFLLL 117
            S     ++  PE ++    + +S ++S G  L+++  G++ IPP  A +L       + 
Sbjct: 161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVE 220

Query: 118 MDSALEGHFSNDEGT-------------------------------------ELVRLASR 140
            D+A         G                                      E     ++
Sbjct: 221 GDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNK 280

Query: 141 CLQSEARERPNAKSL 155
           CL     ER + K L
Sbjct: 281 CLIKNPAERADLKQL 295

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 2e-17
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 20/175 (11%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +  A  +  A  L+ AL Y  SK   ++ D+ A  +L   +   +L  FGL +   D   
Sbjct: 105 LDLASLILYAYQLSTALAYLESKRF-VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY 163

Query: 61  YSTNLAFTPPEYM-----RTGRVTPESVVYSFGTMLLDLLSGKHIP-----PSHALDLIR 110
           Y  +    P ++M        R T  S V+ FG  + ++L     P      +  +  I 
Sbjct: 164 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIE 223

Query: 111 SKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKE 165
           +   L +  +             L  L ++C   +   RP    L   L ++ +E
Sbjct: 224 NGERLPMPPNCPP---------TLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 269

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 3e-17
 Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +  +    +   ++  ++Y   K   ++ DL A  +L       ++S FGL K      S
Sbjct: 106 IPVSNVAELLHQVSMGMKYLEEKNF-VHRDLAARNVLLVNRHYAKISDFGLSKALGADDS 164

Query: 61  YSTN-------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
           Y T        L +  PE +   + +  S V+S+G  + + LS    P       ++   
Sbjct: 165 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKK----MKGPE 220

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL----MSLQKEAEVP 169
            +  ++         +   EL  L S C   +  +RP+  ++   +     SL  + E  
Sbjct: 221 VMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGH 280

Query: 170 SY 171
            +
Sbjct: 281 HH 282

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 5e-17
 Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           M       V     QALE+  S    ++ D+ +  IL   DG+ +L+ FG        +S
Sbjct: 113 MDEGQIAAVCRECLQALEFLHSNQ-VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS 171

Query: 61  YSTNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL 116
             + +  TP    PE +      P+  ++S G M ++++ G+  PP    + +R+  +L+
Sbjct: 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE--PPYLNENPLRAL-YLI 228

Query: 117 LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
             +   E               +RCL  +  +R +AK L
Sbjct: 229 ATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL 267

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 3e-16
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 13/164 (7%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +  +    V      AL Y       ++ DL A  ILF  DG+ +L+ FG+   +     
Sbjct: 107 LTESQIQVVCKQTLDALNYLHDNK-IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ 165

Query: 61  YST----NLAFTPPEYMRT-----GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS 111
                     +  PE +            ++ V+S G  L+++   +  PP H L+ +R 
Sbjct: 166 RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIE--PPHHELNPMRV 223

Query: 112 KNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
               +           +   +       +CL+     R     L
Sbjct: 224 L-LKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQL 266

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 1e-15
 Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 21/175 (12%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
                  R A+ +A+ + Y  SK   ++ DL A  +L       ++  FGLM+       
Sbjct: 108 FLLGTLSRYAVQVAEGMGYLESKRF-IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDD 166

Query: 61  YSTN-------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP-----PSHALDL 108
           +           A+  PE ++T   +  S  + FG  L ++ +    P      S  L  
Sbjct: 167 HYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHK 226

Query: 109 IRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQ 163
           I  +   L            D   ++  +  +C   +  +RP   +L   L+  Q
Sbjct: 227 IDKEGERL--------PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 273

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 1e-15
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 11/162 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           M      R    L   + Y    G   + D+    +L D+  N ++S FGL    R    
Sbjct: 100 MPEPDAQRFFHQLMAGVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNR 158

Query: 61  YSTN------LAFTPPEYMRTGRVTPESV-VYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
                     L +  PE ++      E V V+S G +L  +L+G+      +        
Sbjct: 159 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ---E 215

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
           +    +     +      +  + L  + L      R     +
Sbjct: 216 YSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDI 257

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 72.4 bits (177), Expect = 4e-15
 Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 20/168 (11%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +      ++   L + +          + DL    IL D D N +L+ FG       G+ 
Sbjct: 107 LSEKETRKIMRALLEVICALHKLNIV-HRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK 165

Query: 61  YST---NLAFTPPEYMRTGRV------TPESVVYSFGTMLLDLLSGK----HIPPSHALD 107
                   ++  PE +             E  ++S G ++  LL+G     H      L 
Sbjct: 166 LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR 225

Query: 108 LIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
           +I S N+     S     +S+     +  L SR L  + ++R  A+  
Sbjct: 226 MIMSGNYQF--GSPEWDDYSD----TVKDLVSRFLVVQPQKRYTAEEA 267

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 5e-15
 Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +     +  A  +A+ +EY +SK   ++ DL A  +L  +D   +++ FGL ++      
Sbjct: 132 LSSKDLVSCAYQVARGMEYLASKKC-IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDY 190

Query: 61  Y-STNLAFTPPEYM-----RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
           Y  T     P ++M          T +S V+SFG +L ++ +     P   + +   +  
Sbjct: 191 YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGG-SPYPGVPV---EEL 246

Query: 115 LLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL 159
             L+         ++   EL  +   C  +   +RP  K LV  L
Sbjct: 247 FKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL 291

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 6e-15
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 11/158 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
              +     A  +   L++  SKG  +Y DL    IL DKDG+ +++ FG+ K +  G +
Sbjct: 100 FDLSRATFYAAEIILGLQFLHSKGI-VYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA 158

Query: 61  YSTNLAFT----PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL 116
            +     T     PE +   +       +SFG +L ++L G+   P H  D     + + 
Sbjct: 159 KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ--SPFHGQDEEELFHSIR 216

Query: 117 LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS 154
           + +             E   L  +    E  +R   + 
Sbjct: 217 MDNPFYPRWLEK----EAKDLLVKLFVREPEKRLGVRG 250

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 72.4 bits (177), Expect = 7e-15
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 12/162 (7%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF--DKDGNPRLSSFGLMKNSRDG 58
           M     +     + + L +       ++ DL    I+F   +    +L  FGL  +    
Sbjct: 121 MSEDEAVEYMRQVCKGLCHMHENN-YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK 179

Query: 59  KSYST---NLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKH-IPPSHALDLIRS-KN 113
           +S         F  PE      V   + ++S G +   LLSG       +  + +R+ K+
Sbjct: 180 QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKS 239

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
               MD +     S     +      + L ++   R      
Sbjct: 240 CDWNMDDSAFSGISE----DGKDFIRKLLLADPNTRMTIHQA 277

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 4e-14
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 12/162 (7%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPR--LSSFGLMKNSRDG 58
           +     +     + +AL++  S     + D+    I++    +    +  FG  +  + G
Sbjct: 99  LNEREIVSYVHQVCEALQFLHSHNIG-HFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG 157

Query: 59  KSYSTN---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK--N 113
            ++        +  PE  +   V+  + ++S GT++  LLSG +   +     I     N
Sbjct: 158 DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMN 217

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
                D       S     E +    R L  E + R  A   
Sbjct: 218 AEYTFDEEAFKEISI----EAMDFVDRLLVKERKSRMTASEA 255

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 68.9 bits (168), Expect = 1e-13
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 8/160 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD--KDGNPRLSSFGLMKNSRDG 58
           M  A  +       + L++       ++ D+    I+ +  K  + ++  FGL       
Sbjct: 124 MSEAEVINYMRQACEGLKHMHEHSI-VHLDIKPENIMCETKKASSVKIIDFGLATKLNPD 182

Query: 59  KS---YSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL 115
           +     +    F  PE +    V   + +++ G +   LLSG    P    D + +   +
Sbjct: 183 EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGL--SPFAGEDDLETLQNV 240

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
              D   +    +    E        LQ E R+R      
Sbjct: 241 KRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDA 280

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 1e-13
 Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 17/159 (10%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-GNPRLSSFGLMKNSRDG- 58
           ++  +       + +A+ +C + G  L+ D+    IL D + G  +L  FG     +D  
Sbjct: 107 LQEELARSFFWQVLEAVRHCHNCGV-LHRDIKDENILIDLNRGELKLIDFGSGALLKDTV 165

Query: 59  -KSYSTNLAFTPPEYMRTGRVTPESV-VYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL 116
              +     ++PPE++R  R    S  V+S G +L D++ G   P  H  ++IR + F  
Sbjct: 166 YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI-PFEHDEEIIRGQVF-- 222

Query: 117 LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
                    F     +E   L   CL     +RP  + +
Sbjct: 223 ---------FRQRVSSECQHLIRWCLALRPSDRPTFEEI 252

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 67.5 bits (164), Expect = 2e-13
 Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 11/171 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           M     + V     QAL +    G  ++ D+    I+       ++  FG+ +   D  +
Sbjct: 108 MTPKRAIEVIADACQALNFSHQNG-IIHRDVKPANIMISATNAVKVMDFGIARAIADSGN 166

Query: 61  YSTNL-------AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
             T          +  PE  R   V   S VYS G +L ++L+G+  PP      +    
Sbjct: 167 SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE--PPFTGDSPVSVAY 224

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-NAKSLVISLMSLQ 163
             +  D             +L  +  + L      R   A  +   L+ + 
Sbjct: 225 QHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 275

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.1 bits (163), Expect = 4e-13
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 7/153 (4%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
              A     A  +   LE+  ++   +Y DL    IL D+ G+ R+S  GL  +    K 
Sbjct: 104 FSEADMRFYAAEIILGLEHMHNRFV-VYRDLKPANILLDEHGHVRISDLGLACDFSKKKP 162

Query: 61  YSTN--LAFTPPEYMRTGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL 117
           +++     +  PE ++ G      +  +S G ML  LL G      H     + K+ +  
Sbjct: 163 HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT---KDKHEIDR 219

Query: 118 MDSALEGHFSNDEGTELVRLASRCLQSEARERP 150
           M   +     +    EL  L    LQ +   R 
Sbjct: 220 MTLTMAVELPDSFSPELRSLLEGLLQRDVNRRL 252

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (161), Expect = 7e-13
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 8/153 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-GK 59
               +    A  +  ALEY  SK   +Y DL    IL DK+G+ +++ FG  K   D   
Sbjct: 101 FPNPVAKFYAAEVCLALEYLHSKD-IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY 159

Query: 60  SYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD 119
           +      +  PE + T         +SFG ++ ++L+G    P +  + +++   +L  +
Sbjct: 160 TLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGY--TPFYDSNTMKTYEKILNAE 217

Query: 120 SALEGHFSNDEGTELVRLASRCLQSEARERPNA 152
                 F+     ++  L SR +  +  +R   
Sbjct: 218 LRFPPFFNE----DVKDLLSRLITRDLSQRLGN 246

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.8 bits (160), Expect = 8e-13
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 7/160 (4%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRA--LYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG 58
                  R+   +  A++Y    G         N      D+D    +S FGL K    G
Sbjct: 104 YTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPG 163

Query: 59  KSYST---NLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFL 115
              ST      +  PE +     +     +S G +   LL G   PP +  +  +    +
Sbjct: 164 SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY--PPFYDENDAKLFEQI 221

Query: 116 LLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
           L  +   +  + +D            ++ +  +R   +  
Sbjct: 222 LKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQA 261

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 1e-12
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 17/171 (9%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-- 58
                       +  ALEY   K   ++ DL    IL ++D + +++ FG  K       
Sbjct: 105 FDETCTRFYTAEIVSALEYLHGK-GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 163

Query: 59  ----KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
                S+     +  PE +        S +++ G ++  L++G   PP       R+ N 
Sbjct: 164 QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL--PP------FRAGNE 215

Query: 115 LLLMDSALEGHFSNDEGT--ELVRLASRCLQSEARERPNAKSLVISLMSLQ 163
            L+    ++  +   E    +   L  + L  +A +R   + +        
Sbjct: 216 YLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKA 266

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.5 bits (156), Expect = 2e-12
 Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 25/176 (14%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILF---DKDGNPRLSSFGLMKNSRD 57
                 L +A  +   +EY  SK   ++ D+     L     K     +  FGL K  RD
Sbjct: 100 FSLKTVLLLADQMISRIEYIHSKNF-IHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 158

Query: 58  GKSYSTN-----------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHAL 106
            +++                +           +    + S G +L+    G         
Sbjct: 159 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKA 218

Query: 107 DLIRSK------NFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV 156
              R K        +      L   + +    E     + C      ++P+   L 
Sbjct: 219 ATKRQKYERISEKKMSTPIEVLCKGYPS----EFATYLNFCRSLRFDDKPDYSYLR 270

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 2e-12
 Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 25/179 (13%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +       +   L + L++  S    ++ DL    IL    G  +L+ FGL +      +
Sbjct: 113 VPTETIKDMMFQLLRGLDFLHSHR-VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMA 171

Query: 61  YSTN---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHI----------------- 100
            ++    L +  PE +          ++S G +  ++   K +                 
Sbjct: 172 LTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI 231

Query: 101 ----PPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
                     D+   +       +     F  D       L  +CL     +R +A S 
Sbjct: 232 GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 4e-12
 Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 10/162 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPR----LSSFGLMKNSR 56
           +           +   + Y  S   A + DL    I+      P+    +  FGL     
Sbjct: 110 LTEEEATEFLKQILNGVYYLHSLQIA-HFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID 168

Query: 57  DGKSYSTNL---AFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN 113
            G  +        F  PE +    +  E+ ++S G +   LLSG             +  
Sbjct: 169 FGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLAN- 227

Query: 114 FLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL 155
            +  ++   E  + ++          R L  + ++R   +  
Sbjct: 228 -VSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDS 268

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 2e-11
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRD 57
                   +   + +A++Y  S   A + D+    +L+     +   +L+ FG  K +  
Sbjct: 108 FTEREASEIMKSIGEAIQYLHSINIA-HRDVKPENLLYTSKRPNAILKLTDFGFAKETTS 166

Query: 58  GKSYSTN---LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF 114
             S +T      +  PE +   +      ++S G ++  LL G   PP ++   +     
Sbjct: 167 HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGY--PPFYSNHGLAISPG 224

Query: 115 LLLMDSALEGHFSNDEGT----ELVRLASRCLQSEARERPNAKSL 155
           +       +  F N E +    E+  L    L++E  +R      
Sbjct: 225 MKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEF 269

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-11
 Identities = 31/182 (17%), Positives = 51/182 (28%), Gaps = 28/182 (15%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +  +      L   Q LEY        + DL    +L D++G  +L+ FGL K+      
Sbjct: 97  LTPSHIKAYMLMTLQGLEYLHQHWIL-HRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR 155

Query: 61  YSTNLAFT-----PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHI--------------- 100
             T+   T     P              +++ G +L +LL                    
Sbjct: 156 AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFE 215

Query: 101 ----PPSHALDLIRSKNFLLLMDSALE---GHFSNDEGTELVRLASRCLQSEARERPNAK 153
               P       + S    +   S       H  +  G +L+ L           R  A 
Sbjct: 216 TLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITAT 275

Query: 154 SL 155
             
Sbjct: 276 QA 277

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 60.6 bits (146), Expect = 5e-11
 Identities = 18/183 (9%), Positives = 40/183 (21%), Gaps = 19/183 (10%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-----DGNPRLSSFGLMKNS 55
                    A  +   ++    K   +Y D+     L  +          +  FG++K  
Sbjct: 98  FSVKTVAMAAKQMLARVQSIHEKS-LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY 156

Query: 56  RDGKSYSTN-----------LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSH 104
           RD  +                 +           +    + + G + +  L G       
Sbjct: 157 RDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL 216

Query: 105 ALDLIRSKNFLLLMDSALEGHFSNDEGT--ELVRLASRCLQSEARERPNAKSLVISLMSL 162
                + K   +              G   E  +             P+   L      +
Sbjct: 217 KAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV 276

Query: 163 QKE 165
            + 
Sbjct: 277 LER 279

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 34/188 (18%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +           + + L+Y  S    L+ DL    +L +   + ++  FGL + +     
Sbjct: 106 LSNDHICYFLYQILRGLKYIHSANV-LHRDLKPSNLLLNTTCDLKICDFGLARVADPDHD 164

Query: 61  YST-------NLAFTPPEYMRTGRVTPESV-VYSFGTMLLDLLSGKHIPPSHALDLIRSK 112
           ++           +  PE M   +   +S+ ++S G +L ++LS + I P        + 
Sbjct: 165 HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNH 224

Query: 113 NFLLLMDSALE-------------------------GHFSNDEGTELVRLASRCLQSEAR 147
              +L   + E                              +  ++ + L  + L     
Sbjct: 225 ILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPH 284

Query: 148 ERPNAKSL 155
           +R   +  
Sbjct: 285 KRIEVEQA 292

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 4e-10
 Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 28/182 (15%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +       +   + + L Y  + G   + DL    +  ++D   ++  FGL + +    +
Sbjct: 118 LGEDRIQFLVYQMLKGLRYIHAAGII-HRDLKPGNLAVNEDCELKILDFGLARQADSEMT 176

Query: 61  YSTNLAF--TPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHI------------------ 100
                 +   P   +   R T    ++S G ++ ++++GK +                  
Sbjct: 177 GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTG 236

Query: 101 -PPSHALDLIRSKNFLLLMDSALE------GHFSNDEGTELVRLASRCLQSEARERPNAK 153
            PP+  +  ++S      M    E           +     V L  + L  +A +R  A 
Sbjct: 237 TPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAG 296

Query: 154 SL 155
             
Sbjct: 297 EA 298

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 6e-10
 Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 11/158 (6%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
                       +  ALEY  S+   +Y D+    ++ DKDG+ +++ FGL K      +
Sbjct: 102 FTEERARFYGAEIVSALEYLHSRDV-VYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA 160

Query: 61  YSTNLAFTP----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLL 116
                  TP    PE +           +  G ++ +++ G+   P +  D  R    +L
Sbjct: 161 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR--LPFYNQDHERLFELIL 218

Query: 117 LMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS 154
           + +       S     E   L +  L+ + ++R     
Sbjct: 219 MEEIRFPRTLSP----EAKSLLAGLLKKDPKQRLGGGP 252

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 7e-10
 Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 30/184 (16%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +   +       L + L +C S+   L+ DL    +L +++G  +L++FGL +       
Sbjct: 98  LDPEIVKSFLFQLLKGLGFCHSRNV-LHRDLKPQNLLINRNGELKLANFGLARAFGIPVR 156

Query: 61  YSTNLAFT-----PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIP-------------- 101
             +    T     P         +    ++S G +  +L +                   
Sbjct: 157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIF 216

Query: 102 ----------PSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN 151
                           L   K + +   +    +           L    L+    +R +
Sbjct: 217 RLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRIS 276

Query: 152 AKSL 155
           A+  
Sbjct: 277 AEEA 280

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 9e-10
 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 29/183 (15%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           +   +       L Q L +C S  R L+ DL    +L + +G  +L+ FGL +       
Sbjct: 99  IPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR 157

Query: 61  YSTNLAFT-----PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHI-PPSHALDLIRS--K 112
             T+   T     P   +     +    ++S G +  ++++ + + P    +D +    +
Sbjct: 158 TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 217

Query: 113 NFLLLMDSALEGHFSNDE--------------------GTELVRLASRCLQSEARERPNA 152
                 +    G  S  +                      +   L S+ L  +  +R +A
Sbjct: 218 TLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISA 277

Query: 153 KSL 155
           K+ 
Sbjct: 278 KAA 280

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.4 bits (135), Expect = 2e-09
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD-GK 59
                    A  +    EY  S    +Y DL    +L D+ G  +++ FG  K  +    
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLD-LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW 196

Query: 60  SYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD 119
           +         PE + +         ++ G ++ ++ +G   PP  A   I+    ++   
Sbjct: 197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGY--PPFFADQPIQIYEKIVSGK 254

Query: 120 SALEGHFSNDEGTELVRLASRCLQSEARERPN 151
                HFS+    +L  L    LQ +  +R  
Sbjct: 255 VRFPSHFSS----DLKDLLRNLLQVDLTKRFG 282

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 55.3 bits (132), Expect = 2e-09
 Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 29/183 (15%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
           ++        L L   + YC  +   L+ DL    +L +++G  +++ FGL +       
Sbjct: 97  LESVTAKSFLLQLLNGIAYCHDRR-VLHRDLKPQNLLINREGELKIADFGLARAFGIPVR 155

Query: 61  YSTNLAFTP-----PEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPS------------ 103
             T+   T         M + + +    ++S G +  ++++G  + P             
Sbjct: 156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFR 215

Query: 104 -----------HALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA 152
                      +  +L +      + +      F        + L S+ L+ +  +R  A
Sbjct: 216 ILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITA 275

Query: 153 KSL 155
           K  
Sbjct: 276 KQA 278

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 35/184 (19%), Positives = 52/184 (28%), Gaps = 31/184 (16%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYH-DLNAYRILFDKDGNP-RLSSFGLMKNSRDG 58
           +           L ++L Y  S G  + H D+    +L D D    +L  FG  K    G
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFG--ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 176

Query: 59  KSYSTNLAFT----PPEYMRTGRVTPESVVYSFGTMLLDLLSGKHI----PPSHALDLI- 109
           +   + +       P         T    V+S G +L +LL G+ I         L  I 
Sbjct: 177 EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEII 236

Query: 110 ------------------RSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN 151
                                 F  +        F      E + L SR L+     R  
Sbjct: 237 KVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT 296

Query: 152 AKSL 155
               
Sbjct: 297 PLEA 300

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 13  LAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEY 72
           +  ALE+    G  +Y D+    IL D +G+  L+ FGL K     ++          EY
Sbjct: 138 IVLALEHLHKLG-IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEY 196

Query: 73  MRT-------GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGH 125
           M                  +S G ++ +LL+G    P        S+  +       E  
Sbjct: 197 MAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGA--SPFTVDGEKNSQAEISRRILKSEPP 254

Query: 126 FSNDEGTELVRLASRCLQSEARERPNA 152
           +  +       L  R L  + ++R   
Sbjct: 255 YPQEMSALAKDLIQRLLMKDPKKRLGC 281

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 36/190 (18%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKS 60
              +   RV   L   L Y       L+ D+ A  +L  +DG  +L+ FGL +     K+
Sbjct: 114 FTLSEIKRVMQMLLNGLYYIHRNK-ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKN 172

Query: 61  YSTN--------LAFTPPEYMRTGR-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRS 111
              N        L + PPE +   R   P   ++  G ++ ++ +   I   +      +
Sbjct: 173 SQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLA 232

Query: 112 KNFLLLMDSALEGHFSNDEGT--------------------------ELVRLASRCLQSE 145
               L      E   + D                               + L  + L  +
Sbjct: 233 LISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLD 292

Query: 146 ARERPNAKSL 155
             +R ++   
Sbjct: 293 PAQRIDSDDA 302

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 29/204 (14%), Positives = 63/204 (30%), Gaps = 49/204 (24%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNP------RLSSFGLMKN 54
           +      +++  L   L+Y   +   ++ D+    +L +   +P      +++  G    
Sbjct: 122 IPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACW 181

Query: 55  SRDGKSYS-TNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHI------------- 100
             +  + S     +  PE +        + ++S   ++ +L++G  +             
Sbjct: 182 YDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDD 241

Query: 101 ------------PPSHALDLIRSKNFLLLMDSALEG-----------------HFSNDEG 131
                        PS+ L   +           L                    FS DE 
Sbjct: 242 DHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEA 301

Query: 132 TELVRLASRCLQSEARERPNAKSL 155
            E+    S  LQ + R+R +A  L
Sbjct: 302 KEISDFLSPMLQLDPRKRADAGGL 325

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 7e-06
 Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 28/182 (15%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGL--MKNSRDG 58
           +       +   + + L+Y  S     + DL    +  ++D   ++  FGL    +    
Sbjct: 118 LTDDHVQFLIYQILRGLKYIHSADII-HRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 176

Query: 59  KSYSTNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKH------------------- 99
              +T     P   +          ++S G ++ +LL+G+                    
Sbjct: 177 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 236

Query: 100 IPPSHALDLIRS---KNFLLLMDSALEGHFSN---DEGTELVRLASRCLQSEARERPNAK 153
            P +  L  I S   +N++  +    + +F+N         V L  + L  ++ +R  A 
Sbjct: 237 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 296

Query: 154 SL 155
             
Sbjct: 297 QA 298

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 44.4 bits (104), Expect = 9e-06
 Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 38/192 (19%)

Query: 1   MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNP-RLSSFGLMKNSRDGK 59
           +           + +AL+YC S G   + D+  + ++ D +    RL  +GL +    G+
Sbjct: 126 LTDYDIRFYMYEILKALDYCHSMGIM-HRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ 184

Query: 60  SYS----TNLAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKH---------------- 99
            Y+    +     P   +          ++S G ML  ++  K                 
Sbjct: 185 EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIA 244

Query: 100 ----------------IPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQ 143
                           I      + I  ++     +  +     +    E +    + L+
Sbjct: 245 KVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLR 304

Query: 144 SEARERPNAKSL 155
            + + R  A+  
Sbjct: 305 YDHQSRLTAREA 316

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQV 298
           K+ G+  F  + +  A  CY + I    +     Y  R L YL    P++AL D  +A  
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 299 VSPDWPTALYLQAACLFSLGMENDARETLKDGTNLE 334
           +      A +    C   +   ++A   L+   +L 
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 20/135 (14%)

Query: 224 SFQMWTSQMQETLNSKKH-GDTAFRAKDFSTAIDCYTQFI--------------DGGTMV 268
           S++M T +  E     K  G   F+   +  A+  Y + +                    
Sbjct: 3   SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 62

Query: 269 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 328
               +    + YL      +A+    +A  +       LY +      +     A+   +
Sbjct: 63  LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 122

Query: 329 -----DGTNLEAKKN 338
                +  N  A+  
Sbjct: 123 KVLEVNPQNKAARLQ 137

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 20/135 (14%)

Query: 224 SFQMWTSQMQETLNSKKH-GDTAFRAKDFSTAIDCYTQFIDGGTMVS------------- 269
           S++M + +  E     K  G   F+   +  A+  Y + +      S             
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 270 -PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLK 328
               +    + +L       A+    +A  +  +    L  +     ++     AR   +
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 329 -----DGTNLEAKKN 338
                   N  AK  
Sbjct: 121 KVLQLYPNNKAAKTQ 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.98
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.98
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.98
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.98
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.98
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.98
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.98
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.97
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.97
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.97
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.97
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.97
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.86
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.84
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.81
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.8
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.78
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.74
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.72
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.71
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.67
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.61
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.56
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.53
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.49
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.46
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.44
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.43
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.41
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.39
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.35
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.35
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.31
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.27
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.24
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.23
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.21
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.21
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.15
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.13
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.05
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.98
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.97
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.88
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.85
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.68
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.68
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.47
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.35
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.35
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.35
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.23
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.19
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.11
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.08
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.85
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.7
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.16
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	92.73
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	92.16
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.16
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.04
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	89.83
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	89.37
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.44
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	87.31
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	85.36
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	84.14

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-39  Score=278.82  Aligned_cols=164  Identities=21%  Similarity=0.269  Sum_probs=128.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      ++|.+++.|+.||+.||+|||+++ ||||||||+|||++.++++||+|||+++.....      .+..||+.|+|||++.
T Consensus       101 ~~~~~~~~i~~qi~~gl~yLH~~~-ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~  179 (276)
T d1uwha_         101 FEMIKLIDIARQTAQGMDYLHAKS-IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIR  179 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC-EeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHh
Confidence            578999999999999999999999 999999999999999999999999999765432      3456899999999996


Q ss_pred             c---CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           75 T---GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        75 ~---~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      +   ..++.++|||||||++|||+||+.||........-......-.........+..+++++.+||.+||..||++|||
T Consensus       180 ~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt  259 (276)
T d1uwha_         180 MQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPL  259 (276)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             cccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcC
Confidence            4   3478899999999999999999999875422111111111111011111234566789999999999999999999


Q ss_pred             HHHHHHHHHhhhhh
Q 019475          152 AKSLVISLMSLQKE  165 (340)
Q Consensus       152 ~~e~l~~l~~~~~~  165 (340)
                      +.+++++|+.+.+.
T Consensus       260 ~~~il~~Le~l~~~  273 (276)
T d1uwha_         260 FPQILASIELLARS  273 (276)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988764

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-38  Score=274.57  Aligned_cols=159  Identities=19%  Similarity=0.272  Sum_probs=126.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC---------CcccCCccCCcc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK---------SYSTNLAFTPPE   71 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---------~~~~~~~y~aPE   71 (340)
                      ++|.+++.|+.||+.||.|||+++ |+||||||+|||++.++++||+|||+++......         ...+|+.|+|||
T Consensus       125 l~~~~~~~i~~qia~gl~yLH~~~-iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE  203 (299)
T d1jpaa_         125 FTVIQLVGMLRGIAAGMKYLADMN-YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPE  203 (299)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-CccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHH
Confidence            578999999999999999999999 9999999999999999999999999998654321         124688999999


Q ss_pred             ccccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           72 YMRTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        72 ~~~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                      ++.++.++.++|||||||++|||+| |..||......     .....+......+.+..+++.+.+||.+||+.||++||
T Consensus       204 ~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RP  278 (299)
T d1jpaa_         204 AIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ-----DVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRP  278 (299)
T ss_dssp             HHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSC
T ss_pred             HHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHCc
Confidence            9999999999999999999999998 78887664322     22233333344455667788999999999999999999


Q ss_pred             CHHHHHHHHHhhhhh
Q 019475          151 NAKSLVISLMSLQKE  165 (340)
Q Consensus       151 s~~e~l~~l~~~~~~  165 (340)
                      |+.++++.|+.+.+.
T Consensus       279 s~~ei~~~L~~~l~~  293 (299)
T d1jpaa_         279 KFGQIVNTLDKMIRN  293 (299)
T ss_dssp             CHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999887654

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-38  Score=271.79  Aligned_cols=160  Identities=20%  Similarity=0.276  Sum_probs=129.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      ++|.++++|+.||+.||.|||+++ |+||||||+||||+.++.+||+|||+++.....       ....||+.|+|||++
T Consensus       107 ~~~~~~~~i~~~i~~gl~~lH~~~-iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l  185 (283)
T d1mqba_         107 FSVLQLVGMLRGIAAGMKYLANMN-YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAI  185 (283)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHH
T ss_pred             ccHHHHHHHHHHHHHhhhhccccc-cccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHH
Confidence            578999999999999999999999 999999999999999999999999999865432       123568899999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .+..++.++|||||||++|||++|..|+.....    ...+...+....+.+.+..++..+.+||.+||+.+|++|||+.
T Consensus       186 ~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~  261 (283)
T d1mqba_         186 SYRKFTSASDVWSFGIVMWEVMTYGERPYWELS----NHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFA  261 (283)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             ccCCCCCcccccccHHHHHHHHhCCCCccccCC----HHHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHH
Confidence            999999999999999999999997666544321    1223334444455566777889999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      +|++.|+.+.+.
T Consensus       262 eil~~L~~l~~~  273 (283)
T d1mqba_         262 DIVSILDKLIRA  273 (283)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhC
Confidence            999999887764

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=276.50  Aligned_cols=160  Identities=21%  Similarity=0.312  Sum_probs=127.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |++.+++.|+.||+.||.|||+++ ||||||||+|||++.++++||+|||+++.....      ....||+.|+|||++.
T Consensus       131 l~~~~~~~~~~qi~~gl~ylH~~~-ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~  209 (299)
T d1ywna1         131 LTLEHLICYSFQVAKGMEFLASRK-CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF  209 (299)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-CcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhh
Confidence            478899999999999999999999 999999999999999999999999999854432      2346899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCC-CCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKH-IPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++|.. ||.....    ...+...+........+...++++.+||.+||+.||++|||+.
T Consensus       210 ~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~  285 (299)
T d1ywna1         210 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI----DEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS  285 (299)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC----SHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCCcccceeehHHHHHHHHhCCCCCCCCCCH----HHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            9999999999999999999999764 4543221    1122333334444456667788999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ++++||+.+.+.
T Consensus       286 eil~~L~~ilq~  297 (299)
T d1ywna1         286 ELVEHLGNLLQA  297 (299)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999999987543

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-38  Score=268.77  Aligned_cols=153  Identities=20%  Similarity=0.293  Sum_probs=129.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCccccccCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGRV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~~   78 (340)
                      |++.++..|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....  ....||+.|+|||++.+..+
T Consensus       103 l~e~~~~~i~~qi~~al~~lH~~~-ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~  181 (263)
T d2j4za1         103 FDEQRTATYITELANALSYCHSKR-VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMH  181 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeeeeeccccceecCCCCEeecccceeeecCCCcccccCCCCcccCHHHHcCCCC
Confidence            578899999999999999999999 999999999999999999999999999876544  34578999999999999999


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.++|||||||++|+|++|+.||........-    ..+..  ....+|...++++.+||.+||+.||++|||+.|+++|
T Consensus       182 ~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~----~~i~~--~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~h  255 (263)
T d2j4za1         182 DEKVDLWSLGVLCYEFLVGKPPFEANTYQETY----KRISR--VEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH  255 (263)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHH----HHHHT--TCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             CchhhhhhHhHHHHHHhcCCCCCCCCCHHHHH----HHHHc--CCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHcC
Confidence            99999999999999999999998765322211    11111  1223456678899999999999999999999999987


Q ss_pred             HH
Q 019475          159 LM  160 (340)
Q Consensus       159 l~  160 (340)
                      .+
T Consensus       256 p~  257 (263)
T d2j4za1         256 PW  257 (263)
T ss_dssp             HH
T ss_pred             cC
Confidence            53

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-38  Score=270.05  Aligned_cols=159  Identities=21%  Similarity=0.323  Sum_probs=132.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      |+|.++++|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+
T Consensus       106 l~~~~~~~i~~qi~~gl~~lH~~~-ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~  184 (272)
T d1qpca_         106 LTINKLLDMAAQIAEGMAFIEERN-YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINY  184 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-cccCccchhheeeecccceeeccccceEEccCCccccccccCCcccccChHHHhC
Confidence            588999999999999999999999 999999999999999999999999999876543     23467889999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ..++.++|||||||++|||+||..|+.....    .......+........|..+++++.+||.+||+.||++|||+++|
T Consensus       185 ~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~----~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei  260 (272)
T d1qpca_         185 GTFTIKSDVWSFGILLTEIVTHGRIPYPGMT----NPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL  260 (272)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTTCCSSTTCC----HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCchhhhhhhHHHHHHHHhCCCCCCCCCC----HHHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHH
Confidence            9999999999999999999997655543221    112222333344445566778899999999999999999999999


Q ss_pred             HHHHHhhhh
Q 019475          156 VISLMSLQK  164 (340)
Q Consensus       156 l~~l~~~~~  164 (340)
                      ++.|+....
T Consensus       261 ~~~L~~~ft  269 (272)
T d1qpca_         261 RSVLEDFFT  269 (272)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHhhhhhh
Confidence            999887644

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-38  Score=269.48  Aligned_cols=160  Identities=18%  Similarity=0.305  Sum_probs=124.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      ++|+.++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....     ....||+.|+|||++.+
T Consensus        98 ~~~~~~~~i~~qia~gl~~lH~~~-iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~  176 (263)
T d1sm2a_          98 FAAETLLGMCLDVCEGMAYLEEAC-VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF  176 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCTTCSGGGEEECGGGCEEECSCC------------------CTTSCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHhhhccc-eeecccchhheeecCCCCeEecccchheeccCCCceeecceecCcccCChHHhcC
Confidence            578899999999999999999999 999999999999999999999999999865433     22467899999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ..++.++|||||||++|||+|+..|+.....    .......+........|..+++++.+||.+||+.||++|||++++
T Consensus       177 ~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~----~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~i  252 (263)
T d1sm2a_         177 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRS----NSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRL  252 (263)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC----HHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCchhhhcchHHHHHHHHHCCCCCCCCCC----HHHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHHHH
Confidence            9999999999999999999996544433211    112222333334444566678899999999999999999999999


Q ss_pred             HHHHHhhhhh
Q 019475          156 VISLMSLQKE  165 (340)
Q Consensus       156 l~~l~~~~~~  165 (340)
                      +++|+++.+.
T Consensus       253 l~~L~~i~es  262 (263)
T d1sm2a_         253 LRQLAEIAES  262 (263)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999988653

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-38  Score=279.00  Aligned_cols=156  Identities=22%  Similarity=0.351  Sum_probs=132.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      |+|.+++.|+.||+.||.|||+++ ||||||||+|||++.++++||+|||+++......      +..||+.|+|||++.
T Consensus       161 l~~~~~~~i~~qi~~gl~yLH~~~-IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~  239 (325)
T d1rjba_         161 LTFEDLLCFAYQVAKGMEFLEFKS-CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLF  239 (325)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHc
Confidence            578899999999999999999999 9999999999999999999999999998654332      335689999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||+| |..||.+....    ..+..++......+.|..+++++.+||.+||+.||++|||++
T Consensus       240 ~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~----~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~  315 (325)
T d1rjba_         240 EGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD----ANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFP  315 (325)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS----HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCcceeccchhHHHHHHHhCCCCCCCCCCHH----HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHH
Confidence            9999999999999999999998 88888654221    223344444455556777889999999999999999999999


Q ss_pred             HHHHHHHh
Q 019475          154 SLVISLMS  161 (340)
Q Consensus       154 e~l~~l~~  161 (340)
                      ||+++|..
T Consensus       316 ei~~~L~~  323 (325)
T d1rjba_         316 NLTSFLGC  323 (325)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999864

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-38  Score=271.03  Aligned_cols=160  Identities=18%  Similarity=0.272  Sum_probs=134.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-----CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-----SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~y~aPE~~~~   75 (340)
                      +++..++.|+.||+.||.|||+++ |+||||||+|||++.++++||+|||+++......     ...|++.|+|||++.+
T Consensus       112 ~~~~~~~~i~~qi~~gL~yLH~~~-iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~  190 (287)
T d1opja_         112 VSAVVLLYMATQISSAMEYLEKKN-FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY  190 (287)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHCC-cccCccccCeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcC
Confidence            578899999999999999999999 9999999999999999999999999998765432     2246889999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      ..++.++|||||||++|||++|..||....    ......+.+......+.+..+++++.+||.+||+.||++|||+.++
T Consensus       191 ~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei  266 (287)
T d1opja_         191 NKFSIKSDVWAFGVLLWEIATYGMSPYPGI----DLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI  266 (287)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHTTSCCSSTTC----CHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCchhhhhhHHHHHHHHHhCCCCCCCcc----hHHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHH
Confidence            999999999999999999999776654432    1122334444455556677788999999999999999999999999


Q ss_pred             HHHHHhhhhh
Q 019475          156 VISLMSLQKE  165 (340)
Q Consensus       156 l~~l~~~~~~  165 (340)
                      ++.|+.+...
T Consensus       267 ~~~L~~~~~~  276 (287)
T d1opja_         267 HQAFETMFQE  276 (287)
T ss_dssp             HHHHHHTTSS
T ss_pred             HHHHHHHHHh
Confidence            9999876554

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.8e-38  Score=273.30  Aligned_cols=155  Identities=19%  Similarity=0.218  Sum_probs=130.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCCcccccc---CC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYMRT---GR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~---~~   77 (340)
                      |++.++..|+.||+.||.|||++| ||||||||+|||++.++.+||+|||+++.........||+.|+|||++.+   +.
T Consensus       112 l~e~~~~~i~~qi~~aL~yLH~~~-iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE~~~~~~~~~  190 (309)
T d1u5ra_         112 LQEVEIAAVTHGALQGLAYLHSHN-MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQ  190 (309)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHTTTTSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EeccCCCcceEEECCCCCEEEeecccccccCCCCccccCccccCHHHHhccCCCC
Confidence            578899999999999999999999 99999999999999999999999999998888888899999999999864   45


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVI  157 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~  157 (340)
                      ++.++|||||||++|||++|..||.......    .+..+.........+...++++.+||.+||+.||++|||++++++
T Consensus       191 y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~----~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         191 YDGKVDVWSLGITCIELAERKPPLFNMNAMS----ALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH----HHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             cCchhhhhhHHHHHHHHHHCCCCCCCCCHHH----HHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence            8899999999999999999999887643221    122222222222234456789999999999999999999999998


Q ss_pred             HHH
Q 019475          158 SLM  160 (340)
Q Consensus       158 ~l~  160 (340)
                      |.+
T Consensus       267 Hp~  269 (309)
T d1u5ra_         267 HRF  269 (309)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            743

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-37  Score=269.53  Aligned_cols=153  Identities=20%  Similarity=0.288  Sum_probs=127.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      |+..++..|+.||+.||.|||++| |+||||||+|||++.+|++||+|||+++.....    ....||+.|+|||++.+.
T Consensus       113 l~~~~~~~i~~qi~~aL~yLH~~~-iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~  191 (293)
T d1yhwa1         113 MDEGQIAAVCRECLQALEFLHSNQ-VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK  191 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CcccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCCccChhhhcCC
Confidence            567889999999999999999999 999999999999999999999999999876433    345789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc-cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS-ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      .++.++|||||||++|+|++|+.||........    ...+... ......+..+++++.+||.+||+.||++|||+.|+
T Consensus       192 ~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei  267 (293)
T d1yhwa1         192 AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA----LYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL  267 (293)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH----HHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             CCCchhceehHhHHHHHHhhCCCCCCCCCHHHH----HHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            999999999999999999999999876432211    1111111 12223455678899999999999999999999999


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      ++|
T Consensus       268 l~H  270 (293)
T d1yhwa1         268 LQH  270 (293)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            877

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=269.14  Aligned_cols=159  Identities=18%  Similarity=0.236  Sum_probs=134.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      |++.+++.|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....       ....||+.|+|||++
T Consensus       106 l~~~~~~~i~~qi~~gL~ylH~~~-iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~  184 (285)
T d1u59a_         106 IPVSNVAELLHQVSMGMKYLEEKN-FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI  184 (285)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHH
Confidence            578999999999999999999999 999999999999999999999999999865433       234578899999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .++.++.++|||||||++|||+| |+.||......     .+...+....+.+.|..+++++.+||.+||+.+|++|||+
T Consensus       185 ~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~-----~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~  259 (285)
T d1u59a_         185 NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP-----EVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDF  259 (285)
T ss_dssp             HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCH
T ss_pred             hCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhHCcCH
Confidence            99999999999999999999998 89888654322     2233333444455677888999999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q 019475          153 KSLVISLMSLQKE  165 (340)
Q Consensus       153 ~e~l~~l~~~~~~  165 (340)
                      .++++.|+.....
T Consensus       260 ~~i~~~L~~~~~~  272 (285)
T d1u59a_         260 LTVEQRMRACYYS  272 (285)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998776543

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-38  Score=269.54  Aligned_cols=153  Identities=20%  Similarity=0.284  Sum_probs=119.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC----CceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG----RALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEY   72 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~----~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~   72 (340)
                      |++.+++.|+.||+.||.|||+++    +||||||||+|||++.++.+||+|||+++.....    .+..||+.|+|||+
T Consensus       106 l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~  185 (269)
T d2java1         106 LDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQ  185 (269)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-----------CCCSCCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCHHH
Confidence            577899999999999999999864    3999999999999999999999999999876543    34578999999999


Q ss_pred             cccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           73 MRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        73 ~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +.+..++.++|||||||++|||++|+.||.......+     ...+........+...++++.+||.+||+.||++|||+
T Consensus       186 l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~-----~~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~  260 (269)
T d2java1         186 MNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKEL-----AGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSV  260 (269)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-----HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHH-----HHHHHcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCH
Confidence            9999999999999999999999999999876533222     11122222234556778899999999999999999999


Q ss_pred             HHHHHH
Q 019475          153 KSLVIS  158 (340)
Q Consensus       153 ~e~l~~  158 (340)
                      .|+++|
T Consensus       261 ~ell~h  266 (269)
T d2java1         261 EEILEN  266 (269)
T ss_dssp             HHHHTS
T ss_pred             HHHHhC
Confidence            999876

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=267.27  Aligned_cols=157  Identities=17%  Similarity=0.258  Sum_probs=132.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      |+|.+++.|+.||+.||.|||+++ ||||||||+|||++.++.+||+|||+++......       ...||+.|+|||++
T Consensus       104 l~~~~~~~i~~qi~~gl~ylH~~~-iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l  182 (277)
T d1xbba_         104 VKDKNIIELVHQVSMGMKYLEESN-FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECI  182 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhHHhCC-cccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhh
Confidence            588999999999999999999999 9999999999999999999999999998654332       23578999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|||++ |+.||.+....     .+...+....+.+.|..+++++.+||.+||+.||++|||+
T Consensus       183 ~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~-----~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~  257 (277)
T d1xbba_         183 NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS-----EVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGF  257 (277)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             cCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH-----HHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcCH
Confidence            99999999999999999999998 88888664322     2233333344455667788999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 019475          153 KSLVISLMSLQ  163 (340)
Q Consensus       153 ~e~l~~l~~~~  163 (340)
                      ++|++.|+...
T Consensus       258 ~~i~~~L~~~~  268 (277)
T d1xbba_         258 AAVELRLRNYY  268 (277)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhCHH
Confidence            99988876643

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=266.37  Aligned_cols=154  Identities=17%  Similarity=0.170  Sum_probs=124.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC------CCCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD------GKSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~   74 (340)
                      +++.++..|+.||+.||.|||++| |+||||||+|||++.++.+||+|||+++....      ..+.+||+.|+|||++.
T Consensus       100 l~e~~~~~i~~qi~~al~ylH~~~-IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~  178 (271)
T d1nvra_         100 MPEPDAQRFFHQLMAGVVYLHGIG-ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLK  178 (271)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-CccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhc
Confidence            578899999999999999999999 99999999999999999999999999986532      23457999999999998


Q ss_pred             cCCC-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRV-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..+ +.++|||||||++|||++|+.||........   ..................++++.+||.+||+.||++|||++
T Consensus       179 ~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~  255 (271)
T d1nvra_         179 RREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ---EYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIP  255 (271)
T ss_dssp             CSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSH---HHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHH---HHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            8776 5789999999999999999998865422111   11111111122222345678899999999999999999999


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      |+++|
T Consensus       256 eil~h  260 (271)
T d1nvra_         256 DIKKD  260 (271)
T ss_dssp             HHTTC
T ss_pred             HHhcC
Confidence            99876

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=271.22  Aligned_cols=159  Identities=16%  Similarity=0.262  Sum_probs=133.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC------CcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK------SYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~y~aPE~~~   74 (340)
                      +++.++++|+.||+.||.|||+++ ||||||||+|||++.++++||+|||+++......      ...||+.|+|||++.
T Consensus       108 ~~~~~~~~i~~qi~~gl~yLH~~~-iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~  186 (317)
T d1xkka_         108 IGSQYLLNWCVQIAKGMNYLEDRR-LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL  186 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-cccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHh
Confidence            578899999999999999999999 9999999999999999999999999998754332      235789999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++.++|||||||++|||+| |.+||....     ...+...+....+.+.|..+++++.+|+.+||..||++|||+.
T Consensus       187 ~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~-----~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~  261 (317)
T d1xkka_         187 HRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP-----ASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFR  261 (317)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC-----GGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC-----HHHHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhhCcCHH
Confidence            9999999999999999999998 666665432     2223334444444556677889999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      +++++|..+...
T Consensus       262 eil~~l~~~~~~  273 (317)
T d1xkka_         262 ELIIEFSKMARD  273 (317)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhC
Confidence            999999887654

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-37  Score=264.80  Aligned_cols=159  Identities=21%  Similarity=0.309  Sum_probs=124.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++.+++.++.||+.||.|||+++ ++||||||+||+++.++.+||+|||+++.....     ....||+.|+|||++.+
T Consensus       105 l~~~~~~~~~~qi~~gl~ylH~~~-iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~  183 (273)
T d1mp8a_         105 LDLASLILYAYQLSTALAYLESKR-FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINF  183 (273)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhhcccC-eeccccchhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhcc
Confidence            578899999999999999999999 999999999999999999999999999865432     23456889999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||++ |.+||......     .....+......+.+..+++++.+||.+||..||++|||+.+
T Consensus       184 ~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  258 (273)
T d1mp8a_         184 RRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN-----DVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTE  258 (273)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG-----GHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCccccccchHHHHHHHhcCCCCCCCCCHH-----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHH
Confidence            999999999999999999998 78777654222     222222233334566778899999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 019475          155 LVISLMSLQKE  165 (340)
Q Consensus       155 ~l~~l~~~~~~  165 (340)
                      |+++|..+.+.
T Consensus       259 i~~~L~~i~~~  269 (273)
T d1mp8a_         259 LKAQLSTILEE  269 (273)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-37  Score=262.02  Aligned_cols=154  Identities=17%  Similarity=0.263  Sum_probs=122.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCC-CceecccCCCCeEEc-CCCCeEEecccCcccCCCC--CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKG-RALYHDLNAYRILFD-KDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~-~iih~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..|+.||+.||.|||+++ +|+||||||+|||++ .++.+||+|||+++.....  .+..||+.|+|||++.+ 
T Consensus       109 ~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~-  187 (270)
T d1t4ha_         109 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-  187 (270)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCccccCHHHhCC-
Confidence            577889999999999999999986 499999999999996 5789999999999865543  34579999999999865 


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      +++.++|||||||++|||++|+.||........   ....+........++...++++.+||.+||+.||++|||+.|++
T Consensus       188 ~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell  264 (270)
T d1t4ha_         188 KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ---IYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL  264 (270)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH---HHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHH---HHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHh
Confidence            699999999999999999999999865321111   11111111111123334567899999999999999999999999


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      +|
T Consensus       265 ~H  266 (270)
T d1t4ha_         265 NH  266 (270)
T ss_dssp             TS
T ss_pred             CC
Confidence            87

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=258.49  Aligned_cols=155  Identities=22%  Similarity=0.328  Sum_probs=130.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      +++..+++|+.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....     ....+|+.|+|||++.+
T Consensus        97 ~~~~~~~~i~~qi~~gl~~LH~~~-iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~  175 (258)
T d1k2pa_          97 FQTQQLLEMCKDVCEAMEYLESKQ-FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMY  175 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-BCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhcC-cccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcC
Confidence            467899999999999999999999 999999999999999999999999999765433     23457889999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      ..++.++|||||||++|||+| |+.||.......     ....+........|...++++.+||.+||+.||++|||+++
T Consensus       176 ~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~-----~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~e  250 (258)
T d1k2pa_         176 SKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE-----TAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKI  250 (258)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH-----HHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             CCCCcceeecccchhhHhHHhcCCCCCCCCCHHH-----HHHHHHhCCCCCCcccccHHHHHHHHHHccCCHhHCcCHHH
Confidence            999999999999999999998 787776543322     22223333444566677889999999999999999999999


Q ss_pred             HHHHHHh
Q 019475          155 LVISLMS  161 (340)
Q Consensus       155 ~l~~l~~  161 (340)
                      ++++|..
T Consensus       251 il~~L~d  257 (258)
T d1k2pa_         251 LLSNILD  257 (258)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhC
Confidence            9999854

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-37  Score=263.33  Aligned_cols=160  Identities=23%  Similarity=0.326  Sum_probs=128.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~   75 (340)
                      |+|.+++.|+.||+.||+|||+++ |+||||||+||||+.++++||+|||+++.....     ....+|+.|+|||++.+
T Consensus       110 l~~~~~~~i~~~i~~gl~~LH~~~-ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~  188 (285)
T d1fmka3         110 LRLPQLVDMAAQIASGMAYVERMN-YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY  188 (285)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhh-eecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHHHhC
Confidence            689999999999999999999999 999999999999999999999999999865433     23467899999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSL  155 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  155 (340)
                      +.++.++|||||||++|||++|..|+......    ......+......+.+..+++++.+||.+||+.||++|||+++|
T Consensus       189 ~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i  264 (285)
T d1fmka3         189 GRFTIKSDVWSFGILLTELTTKGRVPYPGMVN----REVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYL  264 (285)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCcHHhhhcchHHHHHHHhCCCCCCCCCCH----HHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhHCcCHHHH
Confidence            99999999999999999999976665443211    11222233334445667788899999999999999999999999


Q ss_pred             HHHHHhhhhh
Q 019475          156 VISLMSLQKE  165 (340)
Q Consensus       156 l~~l~~~~~~  165 (340)
                      ++.|+.....
T Consensus       265 ~~~L~~~~~~  274 (285)
T d1fmka3         265 QAFLEDYFTS  274 (285)
T ss_dssp             HHHHHTTTSC
T ss_pred             HHHHhhhhcC
Confidence            9988775443

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-37  Score=265.28  Aligned_cols=153  Identities=18%  Similarity=0.217  Sum_probs=125.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCC----CCCcccCCccCCccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD----GKSYSTNLAFTPPEYMR--   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~--   74 (340)
                      |++.++..|+.||+.||.|||+++ |+||||||+|||++.+|.+||+|||+++....    ..+..||+.|+|||++.  
T Consensus       107 l~e~~~~~i~~qi~~gL~ylH~~~-ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~  185 (288)
T d2jfla1         107 LTESQIQVVCKQTLDALNYLHDNK-IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCE  185 (288)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-EEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhc
Confidence            578899999999999999999999 99999999999999999999999999876442    24567999999999984  


Q ss_pred             ---cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc-ccCCCCchhHHHHHHHHHHhcccCCCCCC
Q 019475           75 ---TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA-LEGHFSNDEGTELVRLASRCLQSEARERP  150 (340)
Q Consensus        75 ---~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  150 (340)
                         +..++.++|||||||++|||++|+.||.......    ....+.... .....+...++++.+||.+||+.||++||
T Consensus       186 ~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~----~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~  261 (288)
T d2jfla1         186 TSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMR----VLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARW  261 (288)
T ss_dssp             STTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGG----HHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSC
T ss_pred             ccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHH----HHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCc
Confidence               4557899999999999999999999886642211    112222211 11223456778999999999999999999


Q ss_pred             CHHHHHHH
Q 019475          151 NAKSLVIS  158 (340)
Q Consensus       151 s~~e~l~~  158 (340)
                      |+.|+++|
T Consensus       262 t~~ell~h  269 (288)
T d2jfla1         262 TTSQLLQH  269 (288)
T ss_dssp             CHHHHTTS
T ss_pred             CHHHHhcC
Confidence            99999876

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-37  Score=269.46  Aligned_cols=159  Identities=19%  Similarity=0.330  Sum_probs=123.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhC-CCceecccCCCCeEEcCCCCeEEecccCcccCCC--CCCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSK-GRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRD--GKSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~-~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~--~~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..++.||+.||.|||++ + |+||||||+|||++.+|++||+|||+++....  ..+.+||+.|+|||++.+..
T Consensus       101 l~~~~~~~~~~qil~aL~yLH~~~~-IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~  179 (322)
T d1s9ja_         101 IPEQILGKVSIAVIKGLTYLREKHK-IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTH  179 (322)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHC-CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCC-EEccccCHHHeeECCCCCEEEeeCCCccccCCCccccccCCccccCchHHcCCC
Confidence            57888999999999999999975 7 99999999999999999999999999986432  34568999999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh----------------------------------hhHhhh---c
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN----------------------------------FLLLMD---S  120 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~----------------------------------~~~~~~---~  120 (340)
                      ++.++||||+||++|||++|+.||............                                  ..+...   .
T Consensus       180 y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (322)
T d1s9ja_         180 YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVN  259 (322)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhc
Confidence            999999999999999999999998764221110000                                  000000   0


Q ss_pred             cccCCCC-chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Q 019475          121 ALEGHFS-NDEGTELVRLASRCLQSEARERPNAKSLVISLM  160 (340)
Q Consensus       121 ~~~~~~~-~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~  160 (340)
                      ......+ ...+.++.+||.+||..||.+|||++|+++|..
T Consensus       260 ~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf  300 (322)
T d1s9ja_         260 EPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAF  300 (322)
T ss_dssp             SCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred             cCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHh
Confidence            0001111 134678999999999999999999999999844

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.5e-37  Score=266.58  Aligned_cols=157  Identities=21%  Similarity=0.265  Sum_probs=129.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |+|.+++.|+.||+.||+|||+++ +|||||||+|||++.++++||+|||+++.....      .+..+++.|+|||++.
T Consensus       137 l~~~~~~~i~~qi~~gl~ylH~~~-ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~  215 (301)
T d1lufa_         137 LSCAEQLCIARQVAAGMAYLSERK-FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF  215 (301)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhcccCC-eEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHc
Confidence            578899999999999999999999 999999999999999999999999998754322      2346788999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCC-CCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKH-IPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||++|.. ||......     .....+........+..+++++.+||.+||+.+|++|||+.
T Consensus       216 ~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~-----e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~  290 (301)
T d1lufa_         216 YNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHE-----EVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFC  290 (301)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCChhhhhccchhhHHHHHccCCCCCCCCCHH-----HHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHH
Confidence            9999999999999999999999964 45443222     11222222333445667788999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 019475          154 SLVISLMSLQ  163 (340)
Q Consensus       154 e~l~~l~~~~  163 (340)
                      +|++.|+++.
T Consensus       291 ev~~~L~~i~  300 (301)
T d1lufa_         291 SIHRILQRMC  300 (301)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=257.47  Aligned_cols=158  Identities=22%  Similarity=0.358  Sum_probs=127.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      ++|.++++|+.||+.||.|||+++ |+||||||+|||++.++.+|++|||+++..... ....++..|+|||++.+..++
T Consensus       100 l~~~~~~~i~~~i~~al~ylH~~~-ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~~t  178 (262)
T d1byga_         100 LGGDCLLKFSLDVCEAMEYLEGNN-FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFS  178 (262)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCC
T ss_pred             CCHHHHHHHHHHHHhhccccccCc-eeccccchHhheecCCCCEeecccccceecCCCCccccccccCCChHHHhCCCCC
Confidence            588999999999999999999999 999999999999999999999999999875544 345678899999999999999


Q ss_pred             CccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475           80 PESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +++|||||||++|||+| |.+||....     ...+...+......+.+...++++.+||.+||+.||.+|||+.+++++
T Consensus       179 ~~sDIwSfG~il~el~t~~~~p~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~  253 (262)
T d1byga_         179 TKSDVWSFGILLWEIYSFGRVPYPRIP-----LKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ  253 (262)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSCTTSC-----GGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hHHHHHhHHHHHHHHHHCCCCCCCCCC-----HHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            99999999999999998 566554432     222233333444556677788899999999999999999999999999


Q ss_pred             HHhhhh
Q 019475          159 LMSLQK  164 (340)
Q Consensus       159 l~~~~~  164 (340)
                      |+.+..
T Consensus       254 L~~i~~  259 (262)
T d1byga_         254 LEHIKT  259 (262)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988754

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-36  Score=263.54  Aligned_cols=153  Identities=15%  Similarity=0.215  Sum_probs=117.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc---CCCCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD---KDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~---~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      |++.++..|+.||+.||.|||+++ |+||||||+|||+.   .++.+||+|||+++.....   .+..||+.|+|||++.
T Consensus       104 l~e~~~~~~~~qi~~al~ylH~~~-iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~  182 (307)
T d1a06a_         104 YTERDASRLIFQVLDAVKYLHDLG-IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLA  182 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEESSSSTTCCEEECCC------------------CTTSCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhce-eeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHc
Confidence            578899999999999999999999 99999999999995   5789999999999866543   3457999999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--cccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +..++.++|||||||++|+|++|+.||.........    ..+...  ......+...++++.+||.+||+.||++|||+
T Consensus       183 ~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~  258 (307)
T d1a06a_         183 QKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLF----EQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTC  258 (307)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH----HHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             CCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHH----HHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCH
Confidence            999999999999999999999999998765333221    112221  12223345677899999999999999999999


Q ss_pred             HHHHHH
Q 019475          153 KSLVIS  158 (340)
Q Consensus       153 ~e~l~~  158 (340)
                      .|+++|
T Consensus       259 ~eil~h  264 (307)
T d1a06a_         259 EQALQH  264 (307)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            999987

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=262.68  Aligned_cols=153  Identities=19%  Similarity=0.218  Sum_probs=126.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |++.++..++.||+.||.|||+++ ||||||||+|||++.+|.+||+|||+++.....      .+..||+.|+|||++.
T Consensus       105 l~e~~~~~~~~qi~~al~ylH~~~-iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~  183 (288)
T d1uu3a_         105 FDETCTRFYTAEIVSALEYLHGKG-IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT  183 (288)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcccc-EEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceeec
Confidence            577889999999999999999999 999999999999999999999999999875432      2457999999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKS  154 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  154 (340)
                      +..++.++|||||||++|||++|..||.........    ..+...  ...+|...++++.+||.+||+.||++|||++|
T Consensus       184 ~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~----~~i~~~--~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e  257 (288)
T d1uu3a_         184 EKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIF----QKIIKL--EYDFPEKFFPKARDLVEKLLVLDATKRLGCEE  257 (288)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHTT--CCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGG
T ss_pred             cCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHH----HHHHcC--CCCCCccCCHHHHHHHHHHccCCHhHCcCHHH
Confidence            999999999999999999999999998765322211    112211  12345667889999999999999999999999


Q ss_pred             HHHHHH
Q 019475          155 LVISLM  160 (340)
Q Consensus       155 ~l~~l~  160 (340)
                      ++.+.+
T Consensus       258 ~~~~~~  263 (288)
T d1uu3a_         258 MEGYGP  263 (288)
T ss_dssp             GTCHHH
T ss_pred             HcCCHH
Confidence            876644

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-36  Score=260.54  Aligned_cols=159  Identities=22%  Similarity=0.334  Sum_probs=134.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |++.+++.++.||+.||.|||+++ ||||||||+|||++.++.+||+|||+++.....      ....+++.|+|||.+.
T Consensus       132 l~~~~~~~~~~qi~~al~ylH~~~-ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~  210 (299)
T d1fgka_         132 LSSKDLVSCAYQVARGMEYLASKK-CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF  210 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhCC-EEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhc
Confidence            578999999999999999999999 999999999999999999999999998865432      2346788999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++.++|||||||++|||++ |.+||......     .....+........+..+++++.+||.+||+.||++|||+.
T Consensus       211 ~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~-----~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~  285 (299)
T d1fgka_         211 DRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE-----ELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK  285 (299)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-----HHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHH-----HHHHHHHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHH
Confidence            9999999999999999999998 56666544322     22333444455566777888999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ||++.|+++...
T Consensus       286 eil~~L~~i~a~  297 (299)
T d1fgka_         286 QLVEDLDRIVAL  297 (299)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999887543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-36  Score=258.14  Aligned_cols=157  Identities=19%  Similarity=0.271  Sum_probs=130.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC-------CcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK-------SYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-------~~~~~~~y~aPE~~   73 (340)
                      |++..++.++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++......       ...++..|+|||++
T Consensus       108 l~~~~~~~~~~qi~~gl~ylH~~~-iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  186 (273)
T d1u46a_         108 FLLGTLSRYAVQVAEGMGYLESKR-FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESL  186 (273)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhCC-EeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHH
Confidence            578999999999999999999999 9999999999999999999999999998765432       23467889999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHh-CCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLS-GKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      .+..++.++|||||||++|||+| |..||........    ...+.......+.+..++..+.+||.+||..||++|||+
T Consensus       187 ~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~  262 (273)
T d1u46a_         187 KTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQI----LHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTF  262 (273)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH----HHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHH----HHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCH
Confidence            99999999999999999999998 7888865433222    222333334445566778899999999999999999999


Q ss_pred             HHHHHHHHhh
Q 019475          153 KSLVISLMSL  162 (340)
Q Consensus       153 ~e~l~~l~~~  162 (340)
                      .+|++.|.+.
T Consensus       263 ~ei~~~L~~~  272 (273)
T d1u46a_         263 VALRDFLLEA  272 (273)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999888764

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.2e-36  Score=264.18  Aligned_cols=152  Identities=16%  Similarity=0.212  Sum_probs=128.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      |++.++..|+.||+.||.|||+++ ||||||||+|||++.+|++||+|||+++..... .+..||+.|+|||++.+..++
T Consensus       138 l~e~~~~~i~~qi~~aL~yLH~~~-iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~  216 (350)
T d1rdqe_         138 FSEPHARFYAAQIVLTFEYLHSLD-LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYN  216 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EecCcCCHHHcccCCCCCEEeeeceeeeecccccccccCccccCCHHHHcCCCCC
Confidence            567889999999999999999999 999999999999999999999999999876544 456799999999999999999


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NAKS  154 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~~e  154 (340)
                      .++|||||||++|||++|+.||.+......    ...+...  ....+...++++.+||.+||..||.+|+     |+++
T Consensus       217 ~~~DiwSlGvilyemltG~~Pf~~~~~~~~----~~~i~~~--~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~e  290 (350)
T d1rdqe_         217 KAVDWWALGVLIYEMAAGYPPFFADQPIQI----YEKIVSG--KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVND  290 (350)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHHC--CCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHH
T ss_pred             ccccccchhHHHHHHHhCCCCCCCcCHHHH----HHHHhcC--CCCCCccCCHHHHHHHHHHhhhCHHhccccccccHHH
Confidence            999999999999999999999876532221    1122221  1234556788999999999999999994     8999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      +++|-
T Consensus       291 ll~Hp  295 (350)
T d1rdqe_         291 IKNHK  295 (350)
T ss_dssp             HHTSG
T ss_pred             HHcCc
Confidence            99873

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=260.03  Aligned_cols=152  Identities=19%  Similarity=0.329  Sum_probs=128.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++.+.+..++.||+.||+|||++| ||||||||+|||++.+|++||+|||+++.....    .+.+||+.|+|||++.+.
T Consensus       102 ~~e~~~~~~~~qil~al~ylH~~~-iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~  180 (337)
T d1o6la_         102 FTEERARFYGAEIVSALEYLHSRD-VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDN  180 (337)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSS
T ss_pred             CcHHHHHHHHHHHhhhhhhhhhcC-ccccccCHHHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhhhccCC
Confidence            466788899999999999999999 999999999999999999999999999865432    345789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----  151 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----  151 (340)
                      .++.++|||||||++|||++|++||.......+..    .+...  ...+|...++++.+||.+||+.||.+|++     
T Consensus       181 ~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~----~i~~~--~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~  254 (337)
T d1o6la_         181 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFE----LILME--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSD  254 (337)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH----HHHHC--CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTT
T ss_pred             CCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHH----HHhcC--CCCCCccCCHHHHHHHHhhccCCchhhccccccc
Confidence            99999999999999999999999988764432221    11111  22456677889999999999999999994     


Q ss_pred             HHHHHHHH
Q 019475          152 AKSLVISL  159 (340)
Q Consensus       152 ~~e~l~~l  159 (340)
                      +.++++|-
T Consensus       255 ~~eil~Hp  262 (337)
T d1o6la_         255 AKEVMEHR  262 (337)
T ss_dssp             HHHHHTSG
T ss_pred             HHHHHcCc
Confidence            89998874

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=259.80  Aligned_cols=160  Identities=19%  Similarity=0.241  Sum_probs=132.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      |+|.++++++.||+.||.|||+++ |+||||||+|||++.++.+||+|||+++.....   ....||..|+|||.+.+..
T Consensus       124 l~~~~~~~~~~qia~gl~~lH~~~-iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~  202 (309)
T d1fvra_         124 LSSQQLLHFAADVARGMDYLSQKQ-FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV  202 (309)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCE
T ss_pred             CCHHHHHHHHHHHHHHHHhhhcCC-ccccccccceEEEcCCCceEEccccccccccccccccceecCCcccchHHhccCC
Confidence            578999999999999999999999 999999999999999999999999999865533   2346789999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCC-CCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKH-IPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      ++.++|||||||++|||++|.. ||.....     ..+...+......+.+..+++++.+||.+||+.||++|||+.+|+
T Consensus       203 ~~~~sDvwSfGvil~ell~~~~~p~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil  277 (309)
T d1fvra_         203 YTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL  277 (309)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCccceeehhHHHHHHHHhcCCCCCCCCCH-----HHHHHHHHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence            9999999999999999999765 4443321     222233333344456667889999999999999999999999999


Q ss_pred             HHHHhhhhhc
Q 019475          157 ISLMSLQKEA  166 (340)
Q Consensus       157 ~~l~~~~~~~  166 (340)
                      ++|+.+.+..
T Consensus       278 ~~L~~i~~~~  287 (309)
T d1fvra_         278 VSLNRMLEER  287 (309)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhcC
Confidence            9999987643

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-35  Score=258.27  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=128.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCCCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGRVT   79 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~   79 (340)
                      +++..+..++.||+.||.|||++| ||||||||+|||++.+|.+||+|||+++..... .+..||+.|+|||++.+..++
T Consensus       101 ~~~~~~~~~~~qi~~al~~lH~~~-iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~  179 (316)
T d1fota_         101 FPNPVAKFYAAEVCLALEYLHSKD-IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYN  179 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBC
T ss_pred             ccccHHHHHHHHHHHhhhhhccCc-EEccccCchheeEcCCCCEEEecCccceEeccccccccCcccccCHHHHcCCCCC
Confidence            356778889999999999999999 999999999999999999999999999876544 456899999999999999999


Q ss_pred             CccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC-----CHHH
Q 019475           80 PESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP-----NAKS  154 (340)
Q Consensus        80 ~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----s~~e  154 (340)
                      .++|||||||++|+|++|+.||.........    ..+...  ...++...++++.+++.+||..||.+|+     |+++
T Consensus       180 ~~~DiwSlGvilyemltG~~Pf~~~~~~~~~----~~i~~~--~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~  253 (316)
T d1fota_         180 KSIDWWSFGILIYEMLAGYTPFYDSNTMKTY----EKILNA--ELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTED  253 (316)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCTTCCSSHHHHH----HHHHHC--CCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHH
T ss_pred             chhhccccchhHHHHHhCCCCCCCcCHHHHH----HHHHcC--CCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHH
Confidence            9999999999999999999998765332221    122221  1234566778899999999999999996     8999


Q ss_pred             HHHHH
Q 019475          155 LVISL  159 (340)
Q Consensus       155 ~l~~l  159 (340)
                      +++|.
T Consensus       254 il~Hp  258 (316)
T d1fota_         254 VKNHP  258 (316)
T ss_dssp             HHTSG
T ss_pred             HHcCc
Confidence            99873

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=258.36  Aligned_cols=159  Identities=19%  Similarity=0.265  Sum_probs=130.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCcccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~   73 (340)
                      ++.++++++.|++.||.|||+.+ |+||||||+|||++.++.+||+|||+++.....        ....||+.|+|||.+
T Consensus       128 ~~~~~~~i~~qia~gL~~lH~~~-iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  206 (311)
T d1r0pa_         128 TVKDLIGFGLQVAKGMKFLASKK-FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESL  206 (311)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhhcccC-cccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHH
Confidence            57789999999999999999999 999999999999999999999999999865432        123578899999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      .++.++.++||||||+++|||++|..||......    ......+....+...|..+++++.+||.+||+.||++|||+.
T Consensus       207 ~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~----~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~  282 (311)
T d1r0pa_         207 QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT----FDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFS  282 (311)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCSCC----------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCH----HHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCcCHH
Confidence            9999999999999999999999988777654211    112222222233345566778999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ||+++|+++...
T Consensus       283 ei~~~L~~i~~~  294 (311)
T d1r0pa_         283 ELVSRISAIFST  294 (311)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=258.04  Aligned_cols=157  Identities=18%  Similarity=0.181  Sum_probs=125.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..++.||+.||+|||+++ ||||||||+|||++.++.+||+|||+++.....   ....||+.|+|||++.+.+
T Consensus       113 ~~~~~~~~~~~qi~~aL~yLH~~~-ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~  191 (305)
T d1blxa_         113 VPTETIKDMMFQLLRGLDFLHSHR-VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS  191 (305)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-EEecCCCccEEEEcCCCCeeecchhhhhhhcccccCCCcccChhhcCcchhcCCC
Confidence            467888999999999999999999 999999999999999999999999998765433   4567899999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh--------------c-------cccCCCCchhHHHHHH
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD--------------S-------ALEGHFSNDEGTELVR  136 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~--------------~-------~~~~~~~~~~~~~~~~  136 (340)
                      ++.++||||+||++|||++|+.||........-.........              .       ..........++.+.+
T Consensus       192 y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~d  271 (305)
T d1blxa_         192 YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKD  271 (305)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHH
T ss_pred             CChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHH
Confidence            999999999999999999999998765322211111000000              0       0001123345678999


Q ss_pred             HHHHhcccCCCCCCCHHHHHHH
Q 019475          137 LASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       137 li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ||.+||+.||++|||+.|+++|
T Consensus       272 li~~mL~~dP~~R~sa~e~L~H  293 (305)
T d1blxa_         272 LLLKCLTFNPAKRISAYSALSH  293 (305)
T ss_dssp             HHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHHHCcCChhHCcCHHHHhcC
Confidence            9999999999999999999987

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.1e-35  Score=263.69  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=127.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEc--CCCCeEEecccCcccCCCCC---CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFD--KDGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~--~~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~   75 (340)
                      |++.++..|+.||+.||.|||++| ||||||||+|||++  .++.+||+|||+++......   +..||+.|+|||++.+
T Consensus       124 l~e~~~~~i~~qi~~aL~ylH~~~-iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~  202 (352)
T d1koba_         124 MSEAEVINYMRQACEGLKHMHEHS-IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDR  202 (352)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-eeecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccCHHHHcC
Confidence            577899999999999999999999 99999999999998  67899999999998876543   3478999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--cccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--ALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..++.++|||||||++|+|++|+.||.+......    +..+...  .+........++++.+||.+||+.||.+|||+.
T Consensus       203 ~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~  278 (352)
T d1koba_         203 EPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLET----LQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVH  278 (352)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH----HHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHH----HHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHH
Confidence            9999999999999999999999999876532221    1112111  122233456778999999999999999999999


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      |+++|
T Consensus       279 eil~H  283 (352)
T d1koba_         279 DALEH  283 (352)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            99987

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.2e-35  Score=263.37  Aligned_cols=153  Identities=15%  Similarity=0.122  Sum_probs=125.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC--CCCeEEecccCcccCCCCC---CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK--DGNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~--~~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~   75 (340)
                      |++.++..|+.||+.||.|||++| ||||||||+|||++.  ++.+||+|||+++......   +..||+.|+|||++.+
T Consensus       121 l~e~~~~~i~~qi~~aL~ylH~~~-iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~  199 (350)
T d1koaa2         121 MSEDEAVEYMRQVCKGLCHMHENN-YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEG  199 (350)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC-CeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccCHHHHcC
Confidence            578899999999999999999999 999999999999964  5789999999998766543   3578999999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..++.++|||||||++|+|++|+.||.+......    +..+.....  .......+++++.+||.+||..||++|||+.
T Consensus       200 ~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~  275 (350)
T d1koaa2         200 KPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET----LRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIH  275 (350)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             CCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHH----HHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHH
Confidence            9999999999999999999999999876532221    111211111  1112235678899999999999999999999


Q ss_pred             HHHHH
Q 019475          154 SLVIS  158 (340)
Q Consensus       154 e~l~~  158 (340)
                      |+++|
T Consensus       276 eil~h  280 (350)
T d1koaa2         276 QALEH  280 (350)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            99987

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=260.62  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=124.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC---CCCeEEecccCcccCCCC---CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~---~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~   74 (340)
                      |++.++..|+.||+.||.|||++| |+||||||+|||++.   .+.+||+|||+++.....   ....||+.|+|||++.
T Consensus       108 l~e~~~~~i~~qi~~al~ylH~~~-iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~  186 (335)
T d2ozaa1         108 FTEREASEIMKSIGEAIQYLHSIN-IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLG  186 (335)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcC-CccccccccccccccccccccccccccceeeeccCCCccccccCCcccCCcHHHc
Confidence            467889999999999999999999 999999999999985   467999999999865543   3457899999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccC--CCCchhHHHHHHHHHHhcccCCCCCCCH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEG--HFSNDEGTELVRLASRCLQSEARERPNA  152 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rps~  152 (340)
                      +..++.++|||||||++|+|++|+.||.+.............+.......  ......++++.+||.+||+.||++|||+
T Consensus       187 ~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~  266 (335)
T d2ozaa1         187 PEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI  266 (335)
T ss_dssp             GGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             CCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCH
Confidence            99999999999999999999999999876422111111111111111111  1112456789999999999999999999


Q ss_pred             HHHHHHHH
Q 019475          153 KSLVISLM  160 (340)
Q Consensus       153 ~e~l~~l~  160 (340)
                      .|+++|-+
T Consensus       267 ~eil~hp~  274 (335)
T d2ozaa1         267 TEFMNHPW  274 (335)
T ss_dssp             HHHHHSHH
T ss_pred             HHHHcCHH
Confidence            99998844

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-35  Score=261.78  Aligned_cols=155  Identities=21%  Similarity=0.233  Sum_probs=126.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--CCcccCCccCCcccccc-CC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRT-GR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~-~~   77 (340)
                      +++.++..|+.||+.||.|||+++ ||||||||+|||++.+|.+||+|||+++.....  ....||+.|+|||++.+ ..
T Consensus       104 ~~e~~~~~~~~qi~~aL~ylH~~~-iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~  182 (364)
T d1omwa3         104 FSEADMRFYAAEIILGLEHMHNRF-VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVA  182 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECSSSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCC-ccceeeccceeEEcCCCcEEEeeeceeeecCCCcccccccccccchhHHhhcCCC
Confidence            466788999999999999999999 999999999999999999999999999876544  44579999999999975 56


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCC-----H
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPN-----A  152 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps-----~  152 (340)
                      ++.++|||||||++|||++|+.||.........  .+.... .......+...++++.+||.+||+.||++|||     +
T Consensus       183 ~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~--~~~~~~-~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a  259 (364)
T d1omwa3         183 YDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH--EIDRMT-LTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGA  259 (364)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHH--HHHHHS-SSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTH
T ss_pred             CCcccchhHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHhc-ccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCH
Confidence            899999999999999999999998764221110  111111 11223345667889999999999999999999     7


Q ss_pred             HHHHHHH
Q 019475          153 KSLVISL  159 (340)
Q Consensus       153 ~e~l~~l  159 (340)
                      +++++|-
T Consensus       260 ~eil~Hp  266 (364)
T d1omwa3         260 QEVKESP  266 (364)
T ss_dssp             HHHHTSG
T ss_pred             HHHHcCc
Confidence            9999874

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.3e-35  Score=252.47  Aligned_cols=158  Identities=18%  Similarity=0.262  Sum_probs=124.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      |++.+++.|+.||+.||.|||++| |+||||||+|||++.++.++++|||.+......       ....||+.|+|||++
T Consensus       108 l~~~~~~~i~~qi~~al~~lH~~~-iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  186 (277)
T d1o6ya_         108 MTPKRAIEVIADACQALNFSHQNG-IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA  186 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-ccCccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHH
Confidence            578899999999999999999999 999999999999999999999999998754322       344689999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCCCC-
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARERP-  150 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-  150 (340)
                      .+..++.++|||||||++|+|+||+.||.........    ...+...  .........++++.+||.+||+.||.+|| 
T Consensus       187 ~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~  262 (277)
T d1o6ya_         187 RGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA----YQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQ  262 (277)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH----HHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCS
T ss_pred             cCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHH----HHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHh
Confidence            9999999999999999999999999998765332221    1111111  11123345678899999999999999999 


Q ss_pred             CHHHHHHHHHhhh
Q 019475          151 NAKSLVISLMSLQ  163 (340)
Q Consensus       151 s~~e~l~~l~~~~  163 (340)
                      |++++++.|.++.
T Consensus       263 sa~~l~~~l~r~~  275 (277)
T d1o6ya_         263 TAAEMRADLVRVH  275 (277)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8999998887764

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=254.04  Aligned_cols=145  Identities=21%  Similarity=0.384  Sum_probs=122.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC-CCeEEecccCcccCCCC--CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD-GNPRLSSFGLMKNSRDG--KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~-~~~kl~Dfg~~~~~~~~--~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++.++..|+.||+.||.|||+++ |+||||||+|||++.+ +.+||+|||+++.....  .+..||+.|+|||++.+..
T Consensus       107 l~e~~~~~~~~qi~~al~~lH~~~-iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~  185 (273)
T d1xwsa_         107 LQEELARSFFWQVLEAVRHCHNCG-VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHR  185 (273)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CccccCcccceEEecCCCeEEECccccceecccccccccccCCCcCCHHHHcCCC
Confidence            578889999999999999999999 9999999999999854 78999999999865543  4567999999999998776


Q ss_pred             C-CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHH
Q 019475           78 V-TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLV  156 (340)
Q Consensus        78 ~-~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l  156 (340)
                      + +.++|||||||++|||++|+.||.....          +...  ...++...++++.+||.+||+.||++|||++|++
T Consensus       186 ~~~~~~DiwSlGvilyell~g~~Pf~~~~~----------i~~~--~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil  253 (273)
T d1xwsa_         186 YHGRSAAVWSLGILLYDMVCGDIPFEHDEE----------IIRG--QVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQ  253 (273)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHSSCSCCSHHH----------HHHC--CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCcccccccceeeehhHhhCCCCCCCchH----------Hhhc--ccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHh
Confidence            5 5679999999999999999998865321          1111  1234456678999999999999999999999999


Q ss_pred             HH
Q 019475          157 IS  158 (340)
Q Consensus       157 ~~  158 (340)
                      +|
T Consensus       254 ~h  255 (273)
T d1xwsa_         254 NH  255 (273)
T ss_dssp             TS
T ss_pred             cC
Confidence            87

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=252.50  Aligned_cols=157  Identities=19%  Similarity=0.180  Sum_probs=122.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..|+.||+.||+|||++| |+||||||+|||++.++.+||+|||+++.....    ...+||+.|+|||++.+.
T Consensus        97 l~~~~~~~~~~qil~aL~~lH~~~-iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  175 (299)
T d1ua2a_          97 LTPSHIKAYMLMTLQGLEYLHQHW-ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGA  175 (299)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHhhccc-eecccCCcceEEecCCCccccccCccccccCCCcccccceecChhhccHHHHccC
Confidence            466788999999999999999999 999999999999999999999999999865543    345789999999998755


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc--------------cccCC--------CCchhHHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS--------------ALEGH--------FSNDEGTE  133 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~--------~~~~~~~~  133 (340)
                       .++.++|||||||++|||++|.+||........-.........+              .....        .....+++
T Consensus       176 ~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  255 (299)
T d1ua2a_         176 RMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDD  255 (299)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHH
T ss_pred             CCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHH
Confidence             57999999999999999999998887653221111110000000              00000        01234678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.+||.+||+.||++|||+.|+++|
T Consensus       256 ~~dll~~~L~~dP~~R~sa~e~L~H  280 (299)
T d1ua2a_         256 LLDLIQGLFLFNPCARITATQALKM  280 (299)
T ss_dssp             HHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHccCChhhCcCHHHHhCC
Confidence            9999999999999999999999987

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-35  Score=255.31  Aligned_cols=160  Identities=20%  Similarity=0.327  Sum_probs=133.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      |++.+++.|+.||+.||.|||+++ +|||||||+||+++.++.+|++|||.++.....      ....||+.|+|||++.
T Consensus       142 l~~~~~~~~~~qi~~gl~~LH~~~-ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  220 (311)
T d1t46a_         142 LDLEDLLSFSYQVAKGMAFLASKN-CIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF  220 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhc
Confidence            578899999999999999999999 999999999999999999999999999865543      2345789999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCCCC-CCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGKHI-PPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ++.++.++|||||||++|||+|+..| +.....    ...+..++....+...+...++.+.+||.+||+.||++|||+.
T Consensus       221 ~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~  296 (311)
T d1t46a_         221 NCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV----DSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFK  296 (311)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS----SHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCcccccchHHHHHHHHhCCCCCCCCCCH----HHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCHH
Confidence            99999999999999999999995544 433211    1223344445555556667788999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 019475          154 SLVISLMSLQKE  165 (340)
Q Consensus       154 e~l~~l~~~~~~  165 (340)
                      ++++.|++...+
T Consensus       297 ~il~~L~~~i~~  308 (311)
T d1t46a_         297 QIVQLIEKQISE  308 (311)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999999876554

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-35  Score=254.02  Aligned_cols=158  Identities=17%  Similarity=0.225  Sum_probs=129.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC------CCcccCCccCCccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG------KSYSTNLAFTPPEYMR   74 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~   74 (340)
                      ++|..+++|+.|++.||.|||+++ |+||||||+|||++.++++||+|||+++.....      ....+|+.|++||.+.
T Consensus       130 ~~~~~~~~i~~~ia~gl~~LH~~~-ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~  208 (308)
T d1p4oa_         130 PSLSKMIQMAGEIADGMAYLNANK-FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK  208 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCC-eeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHc
Confidence            477899999999999999999999 999999999999999999999999999865432      2335789999999999


Q ss_pred             cCCCCCccchhhHHHHHHHHHhCC-CCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           75 TGRVTPESVVYSFGTMLLDLLSGK-HIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        75 ~~~~~~~~Di~slG~~~~el~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      +..++.++|||||||++|||+||. +|+......     .....+........+..+++.+.+||.+||+.+|++|||+.
T Consensus       209 ~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~-----~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~  283 (308)
T d1p4oa_         209 DGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNE-----QVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFL  283 (308)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHH-----HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCCcccccccHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCHH
Confidence            999999999999999999999996 444433221     11222222233445667788999999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 019475          154 SLVISLMSLQK  164 (340)
Q Consensus       154 e~l~~l~~~~~  164 (340)
                      +|+++|++...
T Consensus       284 ~il~~L~~~~~  294 (308)
T d1p4oa_         284 EIISSIKEEME  294 (308)
T ss_dssp             HHHHHHGGGSC
T ss_pred             HHHHHHHHhcC
Confidence            99999876533

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.4e-34  Score=248.37  Aligned_cols=153  Identities=19%  Similarity=0.224  Sum_probs=126.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCcccccc--
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT--   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~--   75 (340)
                      |++.++..++.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....   ....||+.|++||.+.+  
T Consensus       107 l~e~~~~~~~~qi~~al~~lH~~~-ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~  185 (277)
T d1phka_         107 LSEKETRKIMRALLEVICALHKLN-IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSM  185 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-CcccccccceEEEcCCCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccc
Confidence            578999999999999999999999 999999999999999999999999999876643   34578999999999863  


Q ss_pred             ----CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcc--ccCCCCchhHHHHHHHHHHhcccCCCCC
Q 019475           76 ----GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSA--LEGHFSNDEGTELVRLASRCLQSEARER  149 (340)
Q Consensus        76 ----~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~R  149 (340)
                          ..++.++||||+||++|+|++|+.||.........    ..+....  .........++++.+|+.+||+.||++|
T Consensus       186 ~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~----~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R  261 (277)
T d1phka_         186 NDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLML----RMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKR  261 (277)
T ss_dssp             CTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGS
T ss_pred             cccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHH----HHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHC
Confidence                34688999999999999999999998775432221    1122221  2222334678899999999999999999


Q ss_pred             CCHHHHHHH
Q 019475          150 PNAKSLVIS  158 (340)
Q Consensus       150 ps~~e~l~~  158 (340)
                      ||+.|+++|
T Consensus       262 ~s~~eil~h  270 (277)
T d1phka_         262 YTAEEALAH  270 (277)
T ss_dssp             CCHHHHTTS
T ss_pred             cCHHHHHcC
Confidence            999999876

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-35  Score=252.51  Aligned_cols=153  Identities=16%  Similarity=0.162  Sum_probs=124.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC----CeEEecccCcccCCCC---CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG----NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~----~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~   73 (340)
                      |++.++..++.||+.||.|||+++ |+||||||+|||++.++    .+|++|||+++.....   .+..+|+.|+|||++
T Consensus       110 l~~~~~~~~~~qi~~al~yLH~~~-ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~  188 (293)
T d1jksa_         110 LTEEEATEFLKQILNGVYYLHSLQ-IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIV  188 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhhhhcc-eeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccCHHHH
Confidence            578899999999999999999999 99999999999998776    5999999999876543   345789999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc--cCCCCchhHHHHHHHHHHhcccCCCCCCC
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL--EGHFSNDEGTELVRLASRCLQSEARERPN  151 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps  151 (340)
                      .+..++.++|||||||++|||++|+.||.+......    ...+.....  ....+...+.++.+||.+||..||++|||
T Consensus       189 ~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  264 (293)
T d1jksa_         189 NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET----LANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMT  264 (293)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH----HHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCC
T ss_pred             cCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHH----HHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcC
Confidence            999999999999999999999999999876532221    111111111  11112345678999999999999999999


Q ss_pred             HHHHHHH
Q 019475          152 AKSLVIS  158 (340)
Q Consensus       152 ~~e~l~~  158 (340)
                      ++++++|
T Consensus       265 ~~eil~h  271 (293)
T d1jksa_         265 IQDSLQH  271 (293)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9999987

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=253.70  Aligned_cols=151  Identities=20%  Similarity=0.308  Sum_probs=126.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      ++..++..++.||+.||.|||+++ |+||||||+|||++.++++||+|||+++.....    ....||+.|+|||++.+.
T Consensus       100 ~~e~~~~~~~~qi~~al~ylH~~~-iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  178 (320)
T d1xjda_         100 FDLSRATFYAAEIILGLQFLHSKG-IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQ  178 (320)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC-eeeccCcccceeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCC
Confidence            467789999999999999999999 999999999999999999999999999865432    345789999999999999


Q ss_pred             CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCCCHH-HH
Q 019475           77 RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERPNAK-SL  155 (340)
Q Consensus        77 ~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~-e~  155 (340)
                      .++.++|||||||++|+|++|+.||.+........    .+...  ...+|..+++++.+||.+||..||.+|||+. ++
T Consensus       179 ~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~----~i~~~--~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l  252 (320)
T d1xjda_         179 KYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFH----SIRMD--NPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDI  252 (320)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH----HHHHC--CCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCG
T ss_pred             CCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHH----HHHcC--CCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHH
Confidence            99999999999999999999999997654332211    11111  2244566788999999999999999999985 78


Q ss_pred             HHH
Q 019475          156 VIS  158 (340)
Q Consensus       156 l~~  158 (340)
                      ++|
T Consensus       253 ~~h  255 (320)
T d1xjda_         253 RQH  255 (320)
T ss_dssp             GGS
T ss_pred             HhC
Confidence            765

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-34  Score=250.79  Aligned_cols=165  Identities=15%  Similarity=0.206  Sum_probs=125.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHh--------CCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSS--------KGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~--------~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~   64 (340)
                      ++|.++++++.|++.||.|+|+        ++ ||||||||+||||+.++.+||+|||+++.....        ....||
T Consensus        97 l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~-IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt  175 (303)
T d1vjya_          97 VTVEGMIKLALSTASGLAHLHMEIVGTQGKPA-IAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGT  175 (303)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE-EECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCC-eeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecc
Confidence            5799999999999999999997        46 999999999999999999999999999865332        235689


Q ss_pred             CccCCccccccCC------CCCccchhhHHHHHHHHHhCCCCCCcchhHH----------hhhhhh-hHhhhccccCCCC
Q 019475           65 LAFTPPEYMRTGR------VTPESVVYSFGTMLLDLLSGKHIPPSHALDL----------IRSKNF-LLLMDSALEGHFS  127 (340)
Q Consensus        65 ~~y~aPE~~~~~~------~~~~~Di~slG~~~~el~~g~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~  127 (340)
                      +.|+|||++.+..      ++.++|||||||++|||+||..|+.......          ...... ........+...+
T Consensus       176 ~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  255 (303)
T d1vjya_         176 KRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP  255 (303)
T ss_dssp             GGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCC
T ss_pred             cCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCC
Confidence            9999999987542      5678999999999999999987653311000          000011 1111222222222


Q ss_pred             -----chhHHHHHHHHHHhcccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          128 -----NDEGTELVRLASRCLQSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       128 -----~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                           ......+.+|+.+||+.||++|||+.||+++|+++....
T Consensus       256 ~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~  299 (303)
T d1vjya_         256 NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  299 (303)
T ss_dssp             GGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHhc
Confidence                 234567999999999999999999999999999887664

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.1e-34  Score=248.04  Aligned_cols=164  Identities=16%  Similarity=0.123  Sum_probs=126.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC---CCCeEEecccCcccCCCC-----------CCcccCCc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK---DGNPRLSSFGLMKNSRDG-----------KSYSTNLA   66 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~---~~~~kl~Dfg~~~~~~~~-----------~~~~~~~~   66 (340)
                      +++.+++.++.|++.||+|||++| ||||||||+|||++.   +..+||+|||+++.....           .+..||+.
T Consensus       100 ~~~~~~~~~~~qi~~~l~~lH~~~-iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~  178 (299)
T d1ckia_         100 FSLKTVLLLADQMISRIEYIHSKN-FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTAR  178 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSS
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHCC-eeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCcc
Confidence            578899999999999999999999 999999999999864   457999999999865432           34478999


Q ss_pred             cCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhh--hhhHhhhccccCCCCchhHHHHHHHHHHhccc
Q 019475           67 FTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSK--NFLLLMDSALEGHFSNDEGTELVRLASRCLQS  144 (340)
Q Consensus        67 y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  144 (340)
                      |+|||++.+..++.++|||||||++|||++|+.||...........  .................+++++.+||.+||..
T Consensus       179 y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~  258 (299)
T d1ckia_         179 YASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSL  258 (299)
T ss_dssp             SCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHS
T ss_pred             ccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999865432211111  00010000001112334567899999999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhhh
Q 019475          145 EARERPNAKSLVISLMSLQKE  165 (340)
Q Consensus       145 ~p~~Rps~~e~l~~l~~~~~~  165 (340)
                      +|++||++.++.+.|+.+...
T Consensus       259 ~p~~RP~~~~i~~~l~~~~~~  279 (299)
T d1ckia_         259 RFDDKPDYSYLRQLFRNLFHR  279 (299)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHH
T ss_pred             ChhHCcCHHHHHHHHHHHHHH
Confidence            999999999998888776544

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=246.03  Aligned_cols=157  Identities=18%  Similarity=0.257  Sum_probs=122.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      |++.++..++.||+.||.|||++| ||||||||+|||++.++.+||+|||.++.....    ....||+.|+|||++...
T Consensus        99 l~e~~~~~~~~qil~~L~yLH~~~-IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~  177 (298)
T d1gz8a_          99 IPLPLIKSYLFQLLQGLAFCHSHR-VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC  177 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCC-EEccccCchheeecccCcceeccCCcceeccCCcccceeecccceeeehhhhccc
Confidence            578899999999999999999999 999999999999999999999999999765432    344789999999988766


Q ss_pred             C-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh------------ccccCC-----------CCchhHH
Q 019475           77 R-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD------------SALEGH-----------FSNDEGT  132 (340)
Q Consensus        77 ~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----------~~~~~~~  132 (340)
                      . ++.++|||||||++|+|++|+.||.+......-.........            ......           .....++
T Consensus       178 ~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  257 (298)
T d1gz8a_         178 KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE  257 (298)
T ss_dssp             SSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCH
T ss_pred             cCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCH
Confidence            5 578999999999999999999998764322111110000000            000000           0113457


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ++.+|+.+||+.||++|||+.|+++|
T Consensus       258 ~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         258 DGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhCC
Confidence            89999999999999999999999987

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.6e-33  Score=248.22  Aligned_cols=158  Identities=22%  Similarity=0.216  Sum_probs=123.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCC---CCcccCCccCCcccccc-
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRT-   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~-   75 (340)
                      |++.++..|+.||+.||+|||++| |+||||||+|||++.++ .+||+|||+++.....   .+..||..|+|||.+.+ 
T Consensus       119 l~~~~~~~i~~qil~aL~yLH~~~-IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~  197 (350)
T d1q5ka_         119 LPVIYVKLYMYQLFRSLAYIHSFG-ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGA  197 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC-CcccCCCcceEEEecCCCceeEecccchhhccCCcccccccccccccChHHhhcc
Confidence            578889999999999999999999 99999999999999775 8999999999875443   45578999999998875 


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh-----------hHhhhc----cc--------cCCCCchhHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF-----------LLLMDS----AL--------EGHFSNDEGT  132 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~-----------~~~~~~----~~--------~~~~~~~~~~  132 (340)
                      ..++.++||||+||++|||++|..||........-...+           ......    ..        ........++
T Consensus       198 ~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  277 (350)
T d1q5ka_         198 TDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPP  277 (350)
T ss_dssp             SSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCH
T ss_pred             cCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCH
Confidence            468999999999999999999999987653221111000           000000    00        0011234567


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      ++.+||.+||..||++|||+.|+++|-
T Consensus       278 ~~~dLl~~mL~~dP~~R~ta~e~L~Hp  304 (350)
T d1q5ka_         278 EAIALCSRLLEYTPTARLTPLEACAHS  304 (350)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhcCH
Confidence            899999999999999999999999873

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.98  E-value=2.7e-33  Score=242.32  Aligned_cols=157  Identities=17%  Similarity=0.285  Sum_probs=120.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC----CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~   76 (340)
                      |+..++..|+.||+.||+|||+++ ||||||||+|||++.++.+|++|||.+......    ....+++.|++||.+.+.
T Consensus        97 l~~~~~~~i~~qi~~~L~~LH~~~-IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~  175 (286)
T d1ob3a_          97 LESVTAKSFLLQLLNGIAYCHDRR-VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGS  175 (286)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTC
T ss_pred             cchhhhHHHHHHHHHHHHHhccCc-EEecCCCCceeeEcCCCCEEecccccceecccCccccceecccchhhhHHHHhCC
Confidence            577899999999999999999999 999999999999999999999999998765433    344688999999998765


Q ss_pred             -CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh----------------c-------cccCCCCchhHH
Q 019475           77 -RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD----------------S-------ALEGHFSNDEGT  132 (340)
Q Consensus        77 -~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~----------------~-------~~~~~~~~~~~~  132 (340)
                       .++.++|||||||++|||++|+.||........-.........                .       ..........++
T Consensus       176 ~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  255 (286)
T d1ob3a_         176 KKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDE  255 (286)
T ss_dssp             CSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCH
T ss_pred             CCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCH
Confidence             4689999999999999999999998654321111100000000                0       000112334567


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          133 ELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       133 ~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      .+.+||.+||+.||++|||++|+++|
T Consensus       256 ~~~dli~~~L~~dP~~R~s~~ell~H  281 (286)
T d1ob3a_         256 SGIDLLSKMLKLDPNQRITAKQALEH  281 (286)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhcC
Confidence            89999999999999999999999976

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.1e-34  Score=248.61  Aligned_cols=155  Identities=17%  Similarity=0.226  Sum_probs=125.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCC--CCeEEecccCcccCCCCC---CcccCCccCCcccccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKD--GNPRLSSFGLMKNSRDGK---SYSTNLAFTPPEYMRT   75 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~~---~~~~~~~y~aPE~~~~   75 (340)
                      |++.++..|+.||+.||.|||++| |+||||||+|||++.+  +.+||+|||+++......   ...+|+.|++||.+.+
T Consensus        99 l~e~~~~~i~~qi~~al~yLH~~~-iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~  177 (321)
T d1tkia_          99 LNEREIVSYVHQVCEALQFLHSHN-IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQH  177 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-CCcccccccceeecCCCceEEEEcccchhhccccCCcccccccccccccchhccC
Confidence            578899999999999999999999 9999999999999854  479999999998765543   3467899999999999


Q ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhcccc--CCCCchhHHHHHHHHHHhcccCCCCCCCHH
Q 019475           76 GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALE--GHFSNDEGTELVRLASRCLQSEARERPNAK  153 (340)
Q Consensus        76 ~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  153 (340)
                      ..++.++|||||||++|+|++|..||........    ...+......  .......++++.+||.+||..||++|||+.
T Consensus       178 ~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~----~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~  253 (321)
T d1tkia_         178 DVVSTATDMWSLGTLVYVLLSGINPFLAETNQQI----IENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTAS  253 (321)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH----HHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHH----HHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHH
Confidence            9999999999999999999999999877543222    1122211111  111124567899999999999999999999


Q ss_pred             HHHHHHH
Q 019475          154 SLVISLM  160 (340)
Q Consensus       154 e~l~~l~  160 (340)
                      |+++|-+
T Consensus       254 eil~hp~  260 (321)
T d1tkia_         254 EALQHPW  260 (321)
T ss_dssp             HHHHSHH
T ss_pred             HHhcCHh
Confidence            9999854

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.98  E-value=5.8e-33  Score=240.79  Aligned_cols=165  Identities=12%  Similarity=0.070  Sum_probs=128.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcC-----CCCeEEecccCcccCCC-----------CCCcccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDK-----DGNPRLSSFGLMKNSRD-----------GKSYSTN   64 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~-----~~~~kl~Dfg~~~~~~~-----------~~~~~~~   64 (340)
                      +++.+++.++.|++.||.|||++| ||||||||+|||++.     ++.+||+|||+++....           ..+..||
T Consensus        98 ~~~~~~~~i~~q~~~~l~~lH~~g-iiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT  176 (293)
T d1csna_          98 FSVKTVAMAAKQMLARVQSIHEKS-LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGT  176 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTT-EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHCC-ceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEc
Confidence            467889999999999999999999 999999999999974     57899999999986432           1245689


Q ss_pred             CccCCccccccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHh--hhhhhhHhhhccccCCCCchhHHHHHHHHHHhc
Q 019475           65 LAFTPPEYMRTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLI--RSKNFLLLMDSALEGHFSNDEGTELVRLASRCL  142 (340)
Q Consensus        65 ~~y~aPE~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  142 (340)
                      +.|+|||++.+..++.++|||||||++|||++|..||........  ....+...............+++++.+++..|+
T Consensus       177 ~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~  256 (293)
T d1csna_         177 ARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYAR  256 (293)
T ss_dssp             TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             hhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999864321100  001111111111111122345678999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhhhhhc
Q 019475          143 QSEARERPNAKSLVISLMSLQKEA  166 (340)
Q Consensus       143 ~~~p~~Rps~~e~l~~l~~~~~~~  166 (340)
                      ..+|++||+++.+.+.|..+....
T Consensus       257 ~~~~~~rP~y~~l~~~l~~~~~~~  280 (293)
T d1csna_         257 NLAFDATPDYDYLQGLFSKVLERL  280 (293)
T ss_dssp             HCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCcccCcCHHHHHHHHHHHHHHc
Confidence            999999999999998888876554

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.2e-32  Score=244.63  Aligned_cols=157  Identities=15%  Similarity=0.226  Sum_probs=124.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccC-CC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTG-RV   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~-~~   78 (340)
                      |++..+..++.||+.||.|||++| |+||||||+|||++.++.+|++|||+++..... ....+|+.|+|||++.+. .+
T Consensus       118 l~~~~~~~~~~qi~~aL~~LH~~~-IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~  196 (346)
T d1cm8a_         118 LGEDRIQFLVYQMLKGLRYIHAAG-IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRY  196 (346)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCC-CcccccCcchhhcccccccccccccceeccCCccccccccccccCHHHHcCCCCC
Confidence            578899999999999999999999 999999999999999999999999999876654 456789999999998764 46


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhh----------------------hhHhhhcccc---CCCCchhHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKN----------------------FLLLMDSALE---GHFSNDEGTE  133 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~---~~~~~~~~~~  133 (340)
                      +.++||||+||++|+|++|+.||........-...                      ..........   .......++.
T Consensus       197 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  276 (346)
T d1cm8a_         197 TQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPL  276 (346)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHH
T ss_pred             CccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHH
Confidence            89999999999999999999988664211110000                      0000000000   0122345678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.+||.+||..||.+|||+.|+++|
T Consensus       277 ~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         277 AVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHCcCChhHCcCHHHHhcC
Confidence            9999999999999999999999987

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=7.6e-33  Score=245.64  Aligned_cols=157  Identities=17%  Similarity=0.244  Sum_probs=121.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-------CCcccCCccCCcccc
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~y~aPE~~   73 (340)
                      |++..+..++.||+.||+|||++| ||||||||+|||++.++.+||+|||+++.....       ...+||+.|+|||++
T Consensus       106 l~~~~i~~i~~qil~al~yLH~~~-iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l  184 (345)
T d1pmea_         106 LSNDHICYFLYQILRGLKYIHSAN-VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIM  184 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHh
Confidence            578899999999999999999999 999999999999999999999999998765432       344689999999998


Q ss_pred             cc-CCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhh------------------ccccCC-------CC
Q 019475           74 RT-GRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMD------------------SALEGH-------FS  127 (340)
Q Consensus        74 ~~-~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~-------~~  127 (340)
                      .. ..++.++||||+||++|+|++|+.||..................                  ......       ..
T Consensus       185 ~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (345)
T d1pmea_         185 LNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLF  264 (345)
T ss_dssp             TTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHC
T ss_pred             hcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhC
Confidence            54 45788999999999999999999998664321111110000000                  000000       11


Q ss_pred             chhHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          128 NDEGTELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       128 ~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      ...+.++.+|+.+||+.||.+|||+.++++|
T Consensus       265 ~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         265 PNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             TTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            2345679999999999999999999999987

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.6e-32  Score=241.05  Aligned_cols=156  Identities=17%  Similarity=0.196  Sum_probs=119.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC--------CCcccCCccCCcccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG--------KSYSTNLAFTPPEYM   73 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~y~aPE~~   73 (340)
                      +..++..|+.||+.||.|||++| |+||||||+|||++.++.+||+|||+++.....        .+..||+.|+|||++
T Consensus       115 ~~~~~~~i~~qil~~l~~lH~~~-ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~  193 (318)
T d3blha1         115 TLSEIKRVMQMLLNGLYYIHRNK-ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL  193 (318)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT-EECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhccCC-EEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHH
Confidence            56778899999999999999999 999999999999999999999999999755422        334689999999998


Q ss_pred             ccC-CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccc---c---------------CCCCc------
Q 019475           74 RTG-RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSAL---E---------------GHFSN------  128 (340)
Q Consensus        74 ~~~-~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~------  128 (340)
                      .+. .++.++|||||||++|||++|+.||.+......... +........   .               .....      
T Consensus       194 ~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (318)
T d3blha1         194 LGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL-ISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRL  272 (318)
T ss_dssp             TTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH-HHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHH
T ss_pred             cCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHH-HHHhcCCCChhhccccchhhhhhhhcccccccccchhhh
Confidence            765 589999999999999999999998865432211111 111110000   0               00000      


Q ss_pred             ---hhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          129 ---DEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       129 ---~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                         ..++.+.+||.+||+.||++|||+.|+++|-
T Consensus       273 ~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hp  306 (318)
T d3blha1         273 KAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD  306 (318)
T ss_dssp             HHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSG
T ss_pred             ccccCCHHHHHHHHHHCcCChhHCcCHHHHHcCh
Confidence               1135678999999999999999999999884

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.97  E-value=5.4e-32  Score=238.72  Aligned_cols=158  Identities=16%  Similarity=0.176  Sum_probs=121.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCC-CeEEecccCcccCCCC---CCcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDG-NPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~-~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~   76 (340)
                      |+..++..++.||+.||.|||++| |+||||||+|||++.++ .+||+|||+++.....   ....+|+.|+|||.+.+.
T Consensus       126 l~e~~i~~i~~qil~aL~~LH~~g-IvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~  204 (328)
T d3bqca1         126 LTDYDIRFYMYEILKALDYCHSMG-IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDY  204 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcc-cccccccccceEEcCCCCeeeecccccceeccCCCcccccccCccccCcccccCC
Confidence            567889999999999999999999 99999999999998765 5899999999876543   445789999999998765


Q ss_pred             C-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHh------------------------hh--------cccc
Q 019475           77 R-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL------------------------MD--------SALE  123 (340)
Q Consensus        77 ~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~------------------------~~--------~~~~  123 (340)
                      . ++.++||||+||++|+|++|+.||............+...                        ..        ....
T Consensus       205 ~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (328)
T d3bqca1         205 QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVH  284 (328)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCC
T ss_pred             CCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhccc
Confidence            4 7999999999999999999998886532111000000000                        00        0001


Q ss_pred             CCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          124 GHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       124 ~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      .......++++.+||.+||..||++|||++|+++|-
T Consensus       285 ~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp  320 (328)
T d3bqca1         285 SENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHP  320 (328)
T ss_dssp             TTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             ccccccCCHHHHHHHHHHccCChhHCcCHHHHhcCc
Confidence            111223567899999999999999999999999873

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-32  Score=236.13  Aligned_cols=155  Identities=19%  Similarity=0.263  Sum_probs=122.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-----CCcccCCccCCccccccC
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-----KSYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~   76 (340)
                      +......++.||+.||.|||+++ |+||||||+|||++.+|.+||+|||+++.....     .+..|++.|++||.+.+.
T Consensus       127 ~e~~~~~~~~Qi~~al~~lH~~~-ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~  205 (322)
T d1vzoa_         127 TEHEVQIYVGEIVLALEHLHKLG-IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGG  205 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHhhcCC-EEeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcC
Confidence            45677889999999999999999 999999999999999999999999999865432     345689999999999764


Q ss_pred             --CCCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhccccCCCCchhHHHHHHHHHHhcccCCCCCC----
Q 019475           77 --RVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDSALEGHFSNDEGTELVRLASRCLQSEARERP----  150 (340)
Q Consensus        77 --~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp----  150 (340)
                        .++.++|||||||++|+|++|+.||.................  ......+...++++.+||.+||+.||.+||    
T Consensus       206 ~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~--~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~  283 (322)
T d1vzoa_         206 DSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRIL--KSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGP  283 (322)
T ss_dssp             C---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHH--HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSST
T ss_pred             CcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcc--cCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCc
Confidence              467899999999999999999999866532211111111111  122334566788999999999999999999    


Q ss_pred             -CHHHHHHHH
Q 019475          151 -NAKSLVISL  159 (340)
Q Consensus       151 -s~~e~l~~l  159 (340)
                       |++|+++|.
T Consensus       284 ~t~~eil~Hp  293 (322)
T d1vzoa_         284 RDADEIKEHL  293 (322)
T ss_dssp             TTHHHHHTSG
T ss_pred             ccHHHHHcCH
Confidence             589998863

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-31  Score=230.56  Aligned_cols=157  Identities=16%  Similarity=0.208  Sum_probs=120.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCC----CcccCCccCCccccccC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGK----SYSTNLAFTPPEYMRTG   76 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~   76 (340)
                      +++.++..++.|++.||+|||+++ |+||||||+|||++.++.+||+|||.++......    ...++..|+|||++.+.
T Consensus        98 ~~~~~~~~~~~q~~~aL~~lH~~~-IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~  176 (292)
T d1unla_          98 LDPEIVKSFLFQLLKGLGFCHSRN-VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA  176 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-EECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTC
T ss_pred             cchhHHHHHHHHHHHHHHHhhcCC-EeeecccCcccccccCCceeeeecchhhcccCCCccceeeccccchhhhhHhccC
Confidence            467788999999999999999999 9999999999999999999999999998765432    33567889999998766


Q ss_pred             C-CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHhhhc------------------------cccCCCCchhH
Q 019475           77 R-VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLLMDS------------------------ALEGHFSNDEG  131 (340)
Q Consensus        77 ~-~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~  131 (340)
                      . ++.++|||||||++|||++|+.||............+......                        ..........+
T Consensus       177 ~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  256 (292)
T d1unla_         177 KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLN  256 (292)
T ss_dssp             SCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCC
T ss_pred             CCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCC
Confidence            5 6899999999999999999998865432111100111000000                        00011233456


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 019475          132 TELVRLASRCLQSEARERPNAKSLVIS  158 (340)
Q Consensus       132 ~~~~~li~~cl~~~p~~Rps~~e~l~~  158 (340)
                      +.+.+||.+||+.||.+|||++|+++|
T Consensus       257 ~~~~dll~~mL~~dP~~R~sa~e~L~H  283 (292)
T d1unla_         257 ATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            789999999999999999999999887

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-31  Score=237.42  Aligned_cols=158  Identities=14%  Similarity=0.177  Sum_probs=117.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC---CCcccCCccCCccccccCC
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG---KSYSTNLAFTPPEYMRTGR   77 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~   77 (340)
                      +++..+..++.||+.||.|||++| |+||||||+|||++.++.+|++|||+++.....   ....+|+.|+|||++.+..
T Consensus       116 ~~~~~i~~~~~qil~gl~~LH~~g-iiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~  194 (355)
T d2b1pa1         116 LDHERMSYLLYQMLCGIKHLHSAG-IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  194 (355)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCSCCCGGGEEECTTCCEEECCCCC---------------CCTTCCHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhcc-cccccCCccccccccccceeeechhhhhccccccccccccccccccChhhhcCCC
Confidence            577889999999999999999999 999999999999999999999999998765543   3456899999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhh------------------hHhhhc---------------cccC
Q 019475           78 VTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNF------------------LLLMDS---------------ALEG  124 (340)
Q Consensus        78 ~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~------------------~~~~~~---------------~~~~  124 (340)
                      +++++||||+||++|+|++|+.||.+...........                  ......               ....
T Consensus       195 ~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (355)
T d2b1pa1         195 YKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFP  274 (355)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSC
T ss_pred             CCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccccccccccccccccc
Confidence            9999999999999999999999886543221111000                  000000               0000


Q ss_pred             C---CCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          125 H---FSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       125 ~---~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      .   .....++++.+||.+||..||++|||++|+++|-
T Consensus       275 ~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hp  312 (355)
T d2b1pa1         275 ADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHP  312 (355)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTST
T ss_pred             ccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCc
Confidence            0   0123567899999999999999999999999884

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-31  Score=236.89  Aligned_cols=158  Identities=17%  Similarity=0.222  Sum_probs=119.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCC-CCcccCCccCCccccccCC-C
Q 019475            1 MKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDG-KSYSTNLAFTPPEYMRTGR-V   78 (340)
Q Consensus         1 l~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~-~   78 (340)
                      |++.++..|+.||+.||.|||++| |+||||||+|||++.+|.+|++|||++...... .+..|++.|+|||++.+.. +
T Consensus       118 l~e~~~~~i~~qil~aL~~LH~~g-iiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~  196 (348)
T d2gfsa1         118 LTDDHVQFLIYQILRGLKYIHSAD-IIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHY  196 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCGGGEEECTTCCEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCC-CcccccCCccccccccccccccccchhcccCcccccccccccccCchhhcCCccC
Confidence            577899999999999999999999 999999999999999999999999998765433 4557889999999877654 6


Q ss_pred             CCccchhhHHHHHHHHHhCCCCCCcchhHHhhhhhhhHh-------------------hhccccC-C-----CCchhHHH
Q 019475           79 TPESVVYSFGTMLLDLLSGKHIPPSHALDLIRSKNFLLL-------------------MDSALEG-H-----FSNDEGTE  133 (340)
Q Consensus        79 ~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~-~-----~~~~~~~~  133 (340)
                      +.++|||||||++|+|++|+.||.+..............                   ....... .     .....+++
T Consensus       197 ~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  276 (348)
T d2gfsa1         197 NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPL  276 (348)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHH
T ss_pred             CcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHH
Confidence            889999999999999999999987643221111110000                   0000000 0     01234678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          134 LVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       134 ~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                      +.+||.+||..||++|||+.|+++|-
T Consensus       277 ~~dli~~mL~~dP~~R~ta~elL~Hp  302 (348)
T d2gfsa1         277 AVDLLEKMLVLDSDKRITAAQALAHA  302 (348)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred             HHHHHHHHCcCChhhCcCHHHHhcCH
Confidence            99999999999999999999999873

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.3e-30  Score=229.01  Aligned_cols=157  Identities=17%  Similarity=0.228  Sum_probs=119.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHh-CCCceecccCCCCeEEcCCCC------eEEecccCcccCCCC-CCcccCCccCCcccc
Q 019475            2 KWAMRLRVALYLAQALEYCSS-KGRALYHDLNAYRILFDKDGN------PRLSSFGLMKNSRDG-KSYSTNLAFTPPEYM   73 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~-~~~iih~dlkp~Nil~~~~~~------~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~   73 (340)
                      +...+..++.||+.||.|||+ .| |+||||||+|||++.++.      ++++|||.+...... ....||+.|+|||++
T Consensus       123 ~~~~i~~i~~qil~al~~lh~~~~-IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~  201 (362)
T d1q8ya_         123 PLIYVKQISKQLLLGLDYMHRRCG-IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVL  201 (362)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTC-EECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhcC-cccccCChhHeeeeccCcccccceeeEeecccccccccccccccccccccChhhc
Confidence            567888999999999999998 77 999999999999986654      899999998865543 455789999999999


Q ss_pred             ccCCCCCccchhhHHHHHHHHHhCCCCCCcchhHHhh-h----hhh------------------hHhhhc----------
Q 019475           74 RTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIR-S----KNF------------------LLLMDS----------  120 (340)
Q Consensus        74 ~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~-~----~~~------------------~~~~~~----------  120 (340)
                      .+..++.++||||+||++++|++|+.||......... .    ...                  ......          
T Consensus       202 ~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (362)
T d1q8ya_         202 LGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKL  281 (362)
T ss_dssp             HTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCC
T ss_pred             cccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccc
Confidence            9999999999999999999999999988543110000 0    000                  000000          


Q ss_pred             ---------cccCCCCchhHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 019475          121 ---------ALEGHFSNDEGTELVRLASRCLQSEARERPNAKSLVISL  159 (340)
Q Consensus       121 ---------~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  159 (340)
                               ..........++++.+||.+||..||.+|||+.|+++|-
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp  329 (362)
T d1q8ya_         282 KFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHP  329 (362)
T ss_dssp             CBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCG
T ss_pred             cCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence                     001123345678899999999999999999999999873

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-22  Score=148.96  Aligned_cols=104  Identities=24%  Similarity=0.383  Sum_probs=100.4

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..++++|+.+++.|+|++|+..|+++|+.+|+ ++.+|+++|.+|.++|++++|+.+|+++++++|+++.+|+++|.+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~   80 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   80 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHH
Confidence            3567889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +..+|++++|+.+|+++++++|+.+
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          81 LEFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999854

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=9.8e-22  Score=159.73  Aligned_cols=103  Identities=21%  Similarity=0.408  Sum_probs=99.8

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +..++++|+.+++.|+|++|+..|++||+++|. ++.+|+|+|.||.++|+|++|+.+|++|++++|+++.+|+++|.+|
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            567899999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhccccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      ..+|+|++|+..|++|++++|...
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999998743

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.2e-21  Score=148.68  Aligned_cols=106  Identities=25%  Similarity=0.370  Sum_probs=102.2

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      ....+..++.+|+.+++.|+|++|+..|+++|+++|+ ++.+|+++|.+|+.+|++++|+.+|++|++++|+++.+|+++
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH
Confidence            3466788999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          311 AACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |.++..+|++++|+.+|+++++++|..
T Consensus        85 g~~~~~~g~~~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          85 AASNMALGKFRAALRDYETVVKVKPHD  111 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.81  E-value=8.9e-20  Score=141.65  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=99.3

Q ss_pred             HHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC---------------hhHhhhhhHHHHhcCChHHHHHHHH
Q 019475          230 SQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS---------------PTVYARRCLSYLMNDMPQEALGDAM  294 (340)
Q Consensus       230 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~  294 (340)
                      .....+..+.++|+.+|+.|+|.+|+..|++||+..+...               ..+|.|+|.||.++|+|++|+.+|+
T Consensus        12 e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~   91 (153)
T d2fbna1          12 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS   91 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence            3556688999999999999999999999999998776521               2478999999999999999999999


Q ss_pred             hhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          295 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       295 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +||+++|+++++|+++|.+|..+|++++|+.+|+++++++|+.
T Consensus        92 ~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1          92 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             ccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999974

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.4e-19  Score=141.67  Aligned_cols=107  Identities=11%  Similarity=0.097  Sum_probs=99.0

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC--------------ChhHhhhhhHHHHhcCChHHHHHHHHhh
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--------------SPTVYARRCLSYLMNDMPQEALGDAMQA  296 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a  296 (340)
                      ....+..+.++|+.+|+.|+|++|+..|++||+..|..              ...+|.|+|.||+++|+|++|+.++++|
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            45567889999999999999999999999999987762              1357899999999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          297 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       297 l~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      |+++|+++.+|+++|.+|..+|+|++|+.+|++|+++||+.
T Consensus        89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999974

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.78  E-value=7.1e-19  Score=138.73  Aligned_cols=107  Identities=12%  Similarity=0.163  Sum_probs=97.8

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC--------------ChhHhhhhhHHHHhcCChHHHHHHHHhh
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV--------------SPTVYARRCLSYLMNDMPQEALGDAMQA  296 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a  296 (340)
                      ....+..+.++|+.+|+.|+|.+|+..|++||...+..              ...+|.|+|.||.++|+|.+|+.+|++|
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            44668889999999999999999999999999754441              2356899999999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          297 QVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       297 l~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++++|++..+|+++|.+|..+|+|++|+.+|++++++||+.
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999974

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.6e-19  Score=133.80  Aligned_cols=102  Identities=18%  Similarity=0.159  Sum_probs=95.7

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCch-------HH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWP-------TA  306 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-------~a  306 (340)
                      .+..+++.|+.++..|+|++|+.+|+++|+++|+ ++.+++|+|.||.++|+|++|+.+|++|++++|++.       .+
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            4678899999999999999999999999999999 999999999999999999999999999999999875       47


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          307 LYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       307 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      |+++|.++..++++++|+..|++++.+++.
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            788899999999999999999999988764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.5e-18  Score=136.94  Aligned_cols=106  Identities=20%  Similarity=0.215  Sum_probs=97.2

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcC----------------CCCCChhHhhhhhHHHHhcCChHHHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDG----------------GTMVSPTVYARRCLSYLMNDMPQEALGDAM  294 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~----------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  294 (340)
                      ....+..+...|+.++..|+|.+|+..|++||++                +|. +..+|.|||.||.++|+|++|+.+|+
T Consensus        23 ~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~Ai~~~~  101 (169)
T d1ihga1          23 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-ALSCVLNIGACKLKMSDWQGAVDSCL  101 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChh-hHHHHHHHHHHHHhhcccchhhhhhh
Confidence            3344667889999999999999999999999853                455 67789999999999999999999999


Q ss_pred             hhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          295 QAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       295 ~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +||+++|+++.+|+++|.+|..+|++++|+++|++|++++|+.
T Consensus       102 ~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1         102 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999974

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.74  E-value=4.3e-18  Score=124.64  Aligned_cols=95  Identities=13%  Similarity=0.042  Sum_probs=91.8

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ......|..+++.|++.+|+..|+++|+.+|+ ++.+|+++|.++.++|++++|+.++++|++++|++..+++.+|.+|.
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            44577899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhh
Q 019475          316 SLGMENDARETLKDGT  331 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al  331 (340)
                      .+|++++|++.|+++|
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.6e-17  Score=139.63  Aligned_cols=105  Identities=11%  Similarity=-0.021  Sum_probs=100.9

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ...+..+..+|..+++.|+|++|+..|++||+++|+ ++.+|+++|.+|..+|++++|+.+|+++++++|+++.+++++|
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            345778899999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHhhcccccc
Q 019475          312 ACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       312 ~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .++..+|++++|++.|+++++++|+.
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999874

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3e-17  Score=132.10  Aligned_cols=99  Identities=14%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      ++..+.++|..++..|+|++|++.|+++   .|. ++.+|+|+|.+|..+|+|++|+.+|++||+++|+++.+|+++|.+
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~-~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            3556778999999999999999999974   455 789999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +..+|+|++|+++|++|++..+.
T Consensus        80 ~~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          80 YYQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HHhhccHHHHHHHHHHHHHhCcc
Confidence            99999999999999999987554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.67  E-value=4.8e-17  Score=126.42  Aligned_cols=105  Identities=16%  Similarity=0.107  Sum_probs=93.2

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC------------hhHhhhhhHHHHhcCChHHHHHHHHhhhhh
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS------------PTVYARRCLSYLMNDMPQEALGDAMQAQVV  299 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~l  299 (340)
                      ...+..++.+|+.++..|+|++|+..|++||+++|+ .            +.+|+|+|.+|.++|+|++|+.++++++++
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~-~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChh-hhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            344566778899999999999999999999998886 3            368999999999999999999999999987


Q ss_pred             CCC-----------chHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          300 SPD-----------WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       300 ~p~-----------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .|+           ...+|+++|.+|..+|++++|++.|++|++++|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            553           35589999999999999999999999999998874

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.9e-17  Score=121.00  Aligned_cols=99  Identities=8%  Similarity=-0.013  Sum_probs=89.7

Q ss_pred             HHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcC---ChHHHHHHHHhhhhhCCCc--hHHHHHHHHH
Q 019475          239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMND---MPQEALGDAMQAQVVSPDW--PTALYLQAAC  313 (340)
Q Consensus       239 ~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~l~p~~--~~a~~~~g~~  313 (340)
                      ...++.++..+++++|++.|++++.++|+ ++.+++|+|.++++.+   ++++|+..+++++..+|+.  ..++|++|.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            35667888999999999999999999999 9999999999998754   5668999999999999865  4599999999


Q ss_pred             HHhcCChHHHHHHHHHhhccccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      |+.+|+|++|++.|+++|+++|...
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCH
Confidence            9999999999999999999999853

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.7e-16  Score=124.46  Aligned_cols=102  Identities=18%  Similarity=0.099  Sum_probs=94.5

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc------------
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW------------  303 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------------  303 (340)
                      ..+...|..++..|+|++|++.|++||+++|+ ++.+|+++|.+|.++|+|++|+.+|++|+...|.+            
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            35789999999999999999999999999999 99999999999999999999999999999876543            


Q ss_pred             ----hHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          304 ----PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       304 ----~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                          .+.++++|.++..+|++++|++.|++|++++|...
T Consensus       116 ~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence                46899999999999999999999999999988743

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=1.4e-16  Score=121.94  Aligned_cols=94  Identities=14%  Similarity=0.075  Sum_probs=85.0

Q ss_pred             hHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhc----------CChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          243 DTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMN----------DMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       243 ~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      ..+-+.+.|++|+..|++|++++|+ ++.+++++|.++..+          +++++|+..|++|++++|+++.+|+++|.
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   83 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence            3445667899999999999999999 999999999999865          55689999999999999999999999999


Q ss_pred             HHHhcCC-----------hHHHHHHHHHhhcccccc
Q 019475          313 CLFSLGM-----------ENDARETLKDGTNLEAKK  337 (340)
Q Consensus       313 ~~~~~~~-----------~~~A~~~~~~al~l~~~~  337 (340)
                      +|..+|+           |++|+++|++|++++|+.
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence            9988764           799999999999999973

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.2e-15  Score=130.58  Aligned_cols=101  Identities=16%  Similarity=0.211  Sum_probs=97.2

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ..+...|..+...|++++|+..|++++..+|+ ++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|.
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  251 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  251 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            45677899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhhcccccc
Q 019475          316 SLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .+|++++|++.|++||+++|+.
T Consensus       252 ~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         252 NLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HCCCHHHHHHHHHHHHHhCCcC
Confidence            9999999999999999999974

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.9e-15  Score=128.42  Aligned_cols=114  Identities=8%  Similarity=-0.036  Sum_probs=101.8

Q ss_pred             hhhhhhhHHHHHHHhHHHhHhHHhhcC-CHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCC
Q 019475          223 LSFQMWTSQMQETLNSKKHGDTAFRAK-DFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSP  301 (340)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p  301 (340)
                      .......-.+.....+..+|..+...| ++++|+..|+++|+.+|+ +..+|++||.++.++|++++|+.+++++++++|
T Consensus        65 ~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp  143 (315)
T d2h6fa1          65 LTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA  143 (315)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhh
Confidence            333333345566778899999988876 599999999999999999 999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          302 DWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       302 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++..+|+++|.++..+|++++|+++|+++|++||+.
T Consensus       144 ~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         144 KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            999999999999999999999999999999999974

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.8e-15  Score=128.47  Aligned_cols=102  Identities=14%  Similarity=-0.040  Sum_probs=95.5

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCC-hHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-PQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+.+...|..+.+++.+++|+..|++||+++|+ +..+|++||.++..+|+ +++|+.+++++++++|++..+|+++|.+
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence            445556678888899999999999999999999 99999999999999874 9999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHhhcccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +..+|++++|++.|++++++||+.
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcc
Confidence            999999999999999999999984

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-14  Score=125.23  Aligned_cols=101  Identities=15%  Similarity=0.119  Sum_probs=97.0

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ...+++|..+++.|++++|+..|+++|+.+|+ ++.+|+++|.+|..+|++++|+..|++|++++|++..+++.+|.+|.
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence            34568899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhhcccccc
Q 019475          316 SLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       316 ~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      .+|++++|++.|++++.++|+.
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTT
T ss_pred             ccccccccccchhhHHHhccch
Confidence            9999999999999999998874

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.7e-15  Score=103.24  Aligned_cols=85  Identities=12%  Similarity=-0.010  Sum_probs=76.2

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC------ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHH
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV------SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTAL  307 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  307 (340)
                      +++++++.|..+++.|+|.+|+..|++|+++.|..      .+.++.|+|.+|.++|+|++|+..+++||+++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            36778999999999999999999999999876541      367899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 019475          308 YLQAACLFSLG  318 (340)
Q Consensus       308 ~~~g~~~~~~~  318 (340)
                      ++++.+...++
T Consensus        84 ~Nl~~~~~~l~   94 (95)
T d1tjca_          84 GNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99988776553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-14  Score=125.71  Aligned_cols=98  Identities=13%  Similarity=0.008  Sum_probs=94.3

Q ss_pred             HHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcC
Q 019475          239 KKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG  318 (340)
Q Consensus       239 ~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~  318 (340)
                      ++.|+.+++.|+|++|+..|+++++.+|+ ++.+++++|.+|..+|+|++|+..++++++++|+++.+++.+|.+|..+|
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence            46789999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhhcccccc
Q 019475          319 MENDARETLKDGTNLEAKK  337 (340)
Q Consensus       319 ~~~~A~~~~~~al~l~~~~  337 (340)
                      ++++|+..|..+++.++..
T Consensus        82 ~~~~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDF  100 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             ccccccccccccccccccc
Confidence            9999999999999988763

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-13  Score=121.07  Aligned_cols=102  Identities=15%  Similarity=0.045  Sum_probs=96.2

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ...+...|..+...|++.+|+..|++++...|. +..++..+|.++..+|++++|+..++++++++|+++.+++++|.+|
T Consensus       271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  349 (388)
T d1w3ba_         271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL  349 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            456778889999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ..+|++++|++.|++|++++|+.
T Consensus       350 ~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         350 QQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999974

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.44  E-value=1.4e-14  Score=116.10  Aligned_cols=81  Identities=14%  Similarity=0.103  Sum_probs=60.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCceecccCCCCeEEcCCCCeEEecccCcccCCCCCCcccCCccCC------cccccc
Q 019475            2 KWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSFGLMKNSRDGKSYSTNLAFTP------PEYMRT   75 (340)
Q Consensus         2 ~~~~~~~i~~~i~~~l~~lH~~~~iih~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~a------PE~~~~   75 (340)
                      +......++.|++.+|.|||++| |+||||||+|||+++++ ++|+|||.+.........    .|..      .+. ..
T Consensus       101 ~~~~~~~i~~ql~~~l~~lH~~g-iiHrDiKP~NILv~~~~-~~liDFG~a~~~~~~~~~----~~l~rd~~~~~~~-f~  173 (191)
T d1zara2         101 RVENPDEVLDMILEEVAKFYHRG-IVHGDLSQYNVLVSEEG-IWIIDFPQSVEVGEEGWR----EILERDVRNIITY-FS  173 (191)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTT-EECSCCSTTSEEEETTE-EEECCCTTCEETTSTTHH----HHHHHHHHHHHHH-HH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhCC-EEEccCChhheeeeCCC-EEEEECCCcccCCCCCcH----HHHHHHHHHHHHH-Hc
Confidence            34556789999999999999999 99999999999999655 899999998765433211    1111      111 13


Q ss_pred             CCCCCccchhhHHH
Q 019475           76 GRVTPESVVYSFGT   89 (340)
Q Consensus        76 ~~~~~~~Di~slG~   89 (340)
                      ..|+.++|+||..-
T Consensus       174 r~y~~~~d~~s~~~  187 (191)
T d1zara2         174 RTYRTEKDINSAID  187 (191)
T ss_dssp             HHHCCCCCHHHHHH
T ss_pred             CCCCCcccHHHHHH
Confidence            56788999999654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=1.1e-12  Score=103.52  Aligned_cols=98  Identities=9%  Similarity=0.009  Sum_probs=90.8

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh----------------------hHhhhhhHHHHhcCChHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP----------------------TVYARRCLSYLMNDMPQEA  289 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~----------------------~~~~~~~~~~~~~~~~~~A  289 (340)
                      ....+.+...|..++..|++++|+..|++|+.+.+. +.                      .++.+++.++.++|++++|
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG-~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRG-PVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-STTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            344667889999999999999999999999999875 31                      4689999999999999999


Q ss_pred             HHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHh
Q 019475          290 LGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDG  330 (340)
Q Consensus       290 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~a  330 (340)
                      +.+++++++++|.+..+|..++.+|..+|++++|++.|+++
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=5.6e-13  Score=104.35  Aligned_cols=92  Identities=14%  Similarity=0.106  Sum_probs=85.1

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQA  311 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  311 (340)
                      ...+..+..+|..+++.|+|++|+..|++||+++|+ ++.+|+++|.+|..+|+|++|+.+|++|++++|++..++..++
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            344566788999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHH
Q 019475          312 ACLFSLGMENDAR  324 (340)
Q Consensus       312 ~~~~~~~~~~~A~  324 (340)
                      .+...+..+.++.
T Consensus       153 ~~~~~l~~~~~~~  165 (169)
T d1ihga1         153 KVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9998887777764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6e-13  Score=97.46  Aligned_cols=86  Identities=9%  Similarity=-0.051  Sum_probs=79.6

Q ss_pred             hHHHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHH
Q 019475          229 TSQMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALY  308 (340)
Q Consensus       229 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  308 (340)
                      ...+.....+...|..++..|+|++|+..|+++|+++|+ ++.+|+++|.++..+|+|++|+.+++++++++|+++.++.
T Consensus        31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  109 (117)
T d1elwa_          31 KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE  109 (117)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             hcCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            334555678899999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 019475          309 LQAACLF  315 (340)
Q Consensus       309 ~~g~~~~  315 (340)
                      .++.+..
T Consensus       110 ~l~~l~~  116 (117)
T d1elwa_         110 GLQNMEA  116 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9988753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=2.2e-13  Score=113.78  Aligned_cols=89  Identities=17%  Similarity=0.145  Sum_probs=81.1

Q ss_pred             cCCHHHHHHHHHhhhcCC----CCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHH
Q 019475          248 AKDFSTAIDCYTQFIDGG----TMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDA  323 (340)
Q Consensus       248 ~g~~~~A~~~~~~ai~~~----p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A  323 (340)
                      .++++.|+..+++++...    +. .+.+|+++|.+|.++|+|++|+.+|++|++++|+++.+|+++|.++..+|++++|
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~-~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDE-RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence            446778888888988643    33 6789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccc
Q 019475          324 RETLKDGTNLEAKK  337 (340)
Q Consensus       324 ~~~~~~al~l~~~~  337 (340)
                      +..|+++++++|+.
T Consensus        91 ~~~~~~al~~~p~~  104 (259)
T d1xnfa_          91 YEAFDSVLELDPTY  104 (259)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             hhhhhHHHHHHhhh
Confidence            99999999999974

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-12  Score=101.23  Aligned_cols=98  Identities=14%  Similarity=0.090  Sum_probs=86.9

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  316 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  316 (340)
                      .+...|..+++.|+|++|+..++++|+++|+ ++.+|+++|.+|..+|+|++|+.+|++|++++|++..+...++.++..
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999 999999999999999999999999999999999999999999999988


Q ss_pred             cCChHHHHHH-----HHHhhcccc
Q 019475          317 LGMENDARET-----LKDGTNLEA  335 (340)
Q Consensus       317 ~~~~~~A~~~-----~~~al~l~~  335 (340)
                      ++++.+....     |++..+-|+
T Consensus       143 ~~~~~~~e~~~~~~~f~~~~~~~~  166 (170)
T d1p5qa1         143 IRRQLAREKKLYANMFERLAEEEN  166 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchh
Confidence            8877766543     555444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.35  E-value=2.6e-12  Score=100.37  Aligned_cols=89  Identities=15%  Similarity=0.144  Sum_probs=82.2

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      +..+.++|..+++.|+|.+|+..++++|+++|+ +..+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+.
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            335667899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHH
Q 019475          315 FSLGMENDAR  324 (340)
Q Consensus       315 ~~~~~~~~A~  324 (340)
                      ..++.+.+..
T Consensus       143 ~~~~~~~e~~  152 (168)
T d1kt1a1         143 KKAKEHNERD  152 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhHHHHH
Confidence            8888776543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.4e-12  Score=98.04  Aligned_cols=98  Identities=16%  Similarity=0.044  Sum_probs=86.4

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .+.....+...|..++..|++++|+..|+++|+++|+ +..+|+++|.+|..+|+|++|+.+++++++++|++..++..+
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          40 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4455678899999999999999999999999999999 999999999999999999999999999999999999999888


Q ss_pred             HHHH--HhcCChHHHHHHHHH
Q 019475          311 AACL--FSLGMENDARETLKD  329 (340)
Q Consensus       311 g~~~--~~~~~~~~A~~~~~~  329 (340)
                      +.+.  ...+.+++|+.....
T Consensus       119 ~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_         119 QECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcHH
Confidence            7764  455557777655433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.27  E-value=6.4e-12  Score=96.46  Aligned_cols=83  Identities=13%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ..+.++|..+++.|+|++|+..|++||+++|. +..+|+++|.+|..+|+|++|+.+|+++++++|++..+...++.+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35667899999999999999999999999999 99999999999999999999999999999999999999999998877


Q ss_pred             hcCC
Q 019475          316 SLGM  319 (340)
Q Consensus       316 ~~~~  319 (340)
                      .+++
T Consensus       147 kl~~  150 (153)
T d2fbna1         147 KLKE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.2e-12  Score=92.80  Aligned_cols=69  Identities=19%  Similarity=0.073  Sum_probs=65.6

Q ss_pred             hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          270 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      +..+-++|.+++..|+|++|+..|+++|+++|+++.+++++|.+|..+|+|++|+.+|++|++++|+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~   72 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence            456788999999999999999999999999999999999999999999999999999999999999754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=2.1e-12  Score=103.59  Aligned_cols=95  Identities=6%  Similarity=-0.064  Sum_probs=78.7

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      .+..+..+..+|..+++.|+|++|+..|++||+++|+ +..+|+++|.+|..+|+|++|+.++++|++++|++...+...
T Consensus        34 ~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~  112 (201)
T d2c2la1          34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD  112 (201)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred             CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            3455678899999999999999999999999999999 999999999999999999999999999999999766655555


Q ss_pred             HHHHHhcCChHHHHHH
Q 019475          311 AACLFSLGMENDARET  326 (340)
Q Consensus       311 g~~~~~~~~~~~A~~~  326 (340)
                      +..+...++...+...
T Consensus       113 ~~~~l~~~~~~~~~~~  128 (201)
T d2c2la1         113 IPSALRIAKKKRWNSI  128 (201)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHH
Confidence            5444444444444333

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.2e-11  Score=86.76  Aligned_cols=70  Identities=10%  Similarity=-0.137  Sum_probs=63.5

Q ss_pred             ChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc-------hHHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          269 SPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-------PTALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      .+.-.+++|.++.++|+|.+|+..|++|+++.|.+       ..+++++|.++..+|++++|++.|+++|+++|+.+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            45667899999999999999999999999986643       67899999999999999999999999999999853

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.21  E-value=1.6e-11  Score=88.82  Aligned_cols=68  Identities=16%  Similarity=-0.057  Sum_probs=65.0

Q ss_pred             hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          270 PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ...++++|.++.+.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|++|++++|..
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            35578899999999999999999999999999999999999999999999999999999999999974

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.5e-11  Score=90.29  Aligned_cols=86  Identities=10%  Similarity=-0.041  Sum_probs=74.5

Q ss_pred             HHHHHhHHHhHhHHhh---cCCHHHHHHHHHhhhcCCCCCC--hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHH
Q 019475          232 MQETLNSKKHGDTAFR---AKDFSTAIDCYTQFIDGGTMVS--PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTA  306 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~---~g~~~~A~~~~~~ai~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a  306 (340)
                      ......+++.|..+++   .+++++|+..|++++..+|. +  ..+++++|.+|.++|+|++|+.+|+++++++|++..|
T Consensus        30 p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~-~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          30 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            3445678889999886   45677899999999999887 4  4589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 019475          307 LYLQAACLFSLG  318 (340)
Q Consensus       307 ~~~~g~~~~~~~  318 (340)
                      ...++.+..+++
T Consensus       109 ~~l~~~I~~~~~  120 (122)
T d1nzna_         109 KELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999998876543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=1.8e-11  Score=92.96  Aligned_cols=92  Identities=13%  Similarity=-0.042  Sum_probs=77.9

Q ss_pred             HHHHHHhHHHhHhHHhh----------cCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCC-----------hHHH
Q 019475          231 QMQETLNSKKHGDTAFR----------AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDM-----------PQEA  289 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~----------~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~-----------~~~A  289 (340)
                      .+..+..+...|..++.          .+.+++|+..|++||+++|+ ++.+|+++|.+|..+|+           |++|
T Consensus        27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A  105 (145)
T d1zu2a1          27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA  105 (145)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHh
Confidence            34445667777777763          45668999999999999999 99999999999988764           7999


Q ss_pred             HHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHH
Q 019475          290 LGDAMQAQVVSPDWPTALYLQAACLFSLGMENDA  323 (340)
Q Consensus       290 ~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A  323 (340)
                      ++.|++|++++|++..++..++.+....+.+.++
T Consensus       106 ~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         106 TQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998777666665

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.05  E-value=2.5e-10  Score=95.26  Aligned_cols=77  Identities=9%  Similarity=0.037  Sum_probs=67.2

Q ss_pred             hHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcC
Q 019475          241 HGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLG  318 (340)
Q Consensus       241 ~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~  318 (340)
                      ++..+++.|++++|+..|+++|+.+|+ ++.++.++|.+|...|++++|+..++++++++|++..++..++.++...+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~   78 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ   78 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            466789999999999999999999999 99999999999999999999999999999998887776665555554433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.2e-11  Score=109.13  Aligned_cols=101  Identities=9%  Similarity=-0.125  Sum_probs=65.5

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHH
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAA  312 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  312 (340)
                      .....+...|..+.+.|++.+|+..|.+++..+|.   .++.++|.++...|+|++|+.+|++|++++|+++.+|+++|.
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~  194 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ---HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI  194 (497)
T ss_dssp             -------------------------CCHHHHHHHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            34456677788888888889999888888876554   577788999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhhccccc
Q 019475          313 CLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       313 ~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      ++...|++.+|+..|.+||.++|.
T Consensus       195 ~~~~~~~~~~A~~~y~ral~~~~~  218 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCCC
Confidence            999999999999999999888775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=7.5e-10  Score=95.75  Aligned_cols=99  Identities=12%  Similarity=0.049  Sum_probs=53.8

Q ss_pred             hHHHhHhHHhhcC--CHHHHHHHHHhhhcCCCCCChhHh-hhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHH
Q 019475          237 NSKKHGDTAFRAK--DFSTAIDCYTQFIDGGTMVSPTVY-ARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAAC  313 (340)
Q Consensus       237 ~~~~~g~~~~~~g--~~~~A~~~~~~ai~~~p~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  313 (340)
                      .+..+|..+...+  ++++|+..+.++++.+|. +..++ +.+|.++...+++++|+..++++++++|++..+|+++|.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~  187 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3344444443332  355555555555555555 54443 3445555555555555555555555555555555555555


Q ss_pred             HHhcCChHHHHHHHHHhhccccc
Q 019475          314 LFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       314 ~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +..+|++++|+..+++++++.|+
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~~~~  210 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENVLLK  210 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHhHHH
Confidence            55555555555555555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=3.5e-10  Score=96.03  Aligned_cols=103  Identities=11%  Similarity=-0.018  Sum_probs=88.4

Q ss_pred             HHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCC-----CChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCc-----
Q 019475          234 ETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTM-----VSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDW-----  303 (340)
Q Consensus       234 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----  303 (340)
                      .++.+.+.|+.+...|+|++|+..|.+|+++...     .-+.+|.++|.||.++|++++|+..+++++++.++.     
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            3556778888889999999999999999986322     145789999999999999999999999999987665     


Q ss_pred             -hHHHHHHHHHHHh-cCChHHHHHHHHHhhccccc
Q 019475          304 -PTALYLQAACLFS-LGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       304 -~~a~~~~g~~~~~-~~~~~~A~~~~~~al~l~~~  336 (340)
                       ..++.++|.++.. +|++++|++.|++|+++.+.
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence             5688899998865 79999999999999998765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=3.5e-10  Score=97.89  Aligned_cols=96  Identities=9%  Similarity=-0.008  Sum_probs=89.8

Q ss_pred             HhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChH
Q 019475          242 GDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMEN  321 (340)
Q Consensus       242 g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~  321 (340)
                      ...+...+.+.+|+..|.+++..+|. +...+.++|.++...+++.+|+..+.+++..+|++..+++.+|.++..+|+++
T Consensus       215 ~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  293 (334)
T d1dcea1         215 VQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK  293 (334)
T ss_dssp             HHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH
T ss_pred             HHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHH
Confidence            33456667888999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccc
Q 019475          322 DARETLKDGTNLEAKKN  338 (340)
Q Consensus       322 ~A~~~~~~al~l~~~~~  338 (340)
                      +|+++|++|+++||.+.
T Consensus       294 eA~~~~~~ai~ldP~~~  310 (334)
T d1dcea1         294 ETLQYFSTLKAVDPMRA  310 (334)
T ss_dssp             HHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHCcccH
Confidence            99999999999999754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=2.2e-09  Score=90.97  Aligned_cols=104  Identities=9%  Similarity=-0.189  Sum_probs=89.9

Q ss_pred             HHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC------hhHhhhhhHHHHh-cCChHHHHHHHHhhhhhCCC---
Q 019475          233 QETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS------PTVYARRCLSYLM-NDMPQEALGDAMQAQVVSPD---  302 (340)
Q Consensus       233 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~------~~~~~~~~~~~~~-~~~~~~A~~~~~~al~l~p~---  302 (340)
                      ..+..+.+.|+.+.+.|++++|+..|++++++.+. .      ..++.++|.+|.. +|++++|+..+++|+++.+.   
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH-RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhh-cccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            34567888999999999999999999999988666 3      5789999998865 69999999999999987432   


Q ss_pred             ---chHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          303 ---WPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       303 ---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                         ...++.++|.++..+|+|++|+..|+++++..++.
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence               35578999999999999999999999999987764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=5.6e-09  Score=89.55  Aligned_cols=105  Identities=12%  Similarity=-0.016  Sum_probs=90.9

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCC-----hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCC---
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVS-----PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPD---  302 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---  302 (340)
                      ....++...-+|..++..|++++|+..|+++++..|+ +     ..++.++|.+|..+|++++|+..+++++++.|.   
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~   86 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   86 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            3344555566799999999999999999999999998 5     358899999999999999999999999987654   


Q ss_pred             ---chHHHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          303 ---WPTALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       303 ---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                         ...+++.+|.++...|++..|...|.+++++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~  123 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE  123 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence               3457889999999999999999999999987654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.3e-08  Score=92.82  Aligned_cols=83  Identities=13%  Similarity=-0.062  Sum_probs=78.3

Q ss_pred             HhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHH
Q 019475          236 LNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLF  315 (340)
Q Consensus       236 ~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  315 (340)
                      ..+...|..+...|+|++|+..|.+|++++|+ +..+|+++|.+|...|++.+|+.+|.+|+.++|.++.|+.+++.++.
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            46778899999999999999999999999999 99999999999999999999999999999999999999999999987


Q ss_pred             hcCC
Q 019475          316 SLGM  319 (340)
Q Consensus       316 ~~~~  319 (340)
                      ...+
T Consensus       232 ~~~~  235 (497)
T d1ya0a1         232 KALE  235 (497)
T ss_dssp             HHTT
T ss_pred             Hhhh
Confidence            6543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.68  E-value=1.3e-08  Score=77.68  Aligned_cols=67  Identities=16%  Similarity=0.071  Sum_probs=59.1

Q ss_pred             hhHhhhh--hHHHHhcCChHHHHHHHHhhhhhCCCch------------HHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 019475          270 PTVYARR--CLSYLMNDMPQEALGDAMQAQVVSPDWP------------TALYLQAACLFSLGMENDARETLKDGTNLEA  335 (340)
Q Consensus       270 ~~~~~~~--~~~~~~~~~~~~A~~~~~~al~l~p~~~------------~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~  335 (340)
                      +.+|.++  |..++..|+|++|+..|++||++.|+.+            .+|.++|.+|..+|+|++|+.+|++++++.+
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4455555  7788899999999999999999998754            5899999999999999999999999999877


Q ss_pred             c
Q 019475          336 K  336 (340)
Q Consensus       336 ~  336 (340)
                      +
T Consensus        87 ~   87 (156)
T d2hr2a1          87 R   87 (156)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=2.7e-08  Score=85.16  Aligned_cols=102  Identities=13%  Similarity=0.005  Sum_probs=88.8

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCC---ChhHhhhhhHHHHhcCChHHHHHHHHhhh------hhCCCchH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMV---SPTVYARRCLSYLMNDMPQEALGDAMQAQ------VVSPDWPT  305 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al------~l~p~~~~  305 (340)
                      ...+...|..+...|++++|+..|.++++..+..   ....+.++|.+|..+|++++|+..+++++      ...|+...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  292 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR  292 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence            3455677888889999999999999999988762   24567889999999999999999999997      44577888


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  336 (340)
                      +++.+|.+|..+|++++|++.|++|+++.++
T Consensus       293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999998654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=1.9e-07  Score=66.72  Aligned_cols=77  Identities=5%  Similarity=-0.185  Sum_probs=62.7

Q ss_pred             HHhHhHHhh---cCCHHHHHHHHHhhhcCCCCCC-hhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH
Q 019475          239 KKHGDTAFR---AKDFSTAIDCYTQFIDGGTMVS-PTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL  314 (340)
Q Consensus       239 ~~~g~~~~~---~g~~~~A~~~~~~ai~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  314 (340)
                      ++.|-.+.+   ..+.++||..++++++.+|. + ..++|++|.+|.++|+|++|...++++|+++|++..|...+-.+-
T Consensus        39 F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          39 FNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            444444443   34678999999999998887 5 489999999999999999999999999999999999987776654


Q ss_pred             Hh
Q 019475          315 FS  316 (340)
Q Consensus       315 ~~  316 (340)
                      ..
T Consensus       118 ~~  119 (124)
T d2pqrb1         118 DK  119 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=6.5e-07  Score=63.90  Aligned_cols=73  Identities=8%  Similarity=0.004  Sum_probs=63.7

Q ss_pred             CCCChhHhhhhhHHHHhc---CChHHHHHHHHhhhhhCCCch-HHHHHHHHHHHhcCChHHHHHHHHHhhccccccc
Q 019475          266 TMVSPTVYARRCLSYLMN---DMPQEALGDAMQAQVVSPDWP-TALYLQAACLFSLGMENDARETLKDGTNLEAKKN  338 (340)
Q Consensus       266 p~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~  338 (340)
                      |.+.....++.|.++.+-   .+.++||..++.+++.+|.+. .++|.+|.+|+.+|+|++|...++++|+++|...
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            433577889999988875   456799999999999999764 7999999999999999999999999999999854

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.35  E-value=3.6e-07  Score=75.68  Aligned_cols=61  Identities=21%  Similarity=0.032  Sum_probs=57.4

Q ss_pred             hHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHHHHHHHHhhcccccc
Q 019475          277 CLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       277 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      +.-.++.|++++|+..++++++.+|+++.++..+|.+|..+|++++|++.|+++++++|+.
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~   63 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   63 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Confidence            3456788999999999999999999999999999999999999999999999999999974

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.2e-06  Score=74.11  Aligned_cols=98  Identities=13%  Similarity=0.014  Sum_probs=84.5

Q ss_pred             HHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHH-hcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh
Q 019475          238 SKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYL-MNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS  316 (340)
Q Consensus       238 ~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  316 (340)
                      +...++...+.|+++.|...|.++++..|. +...|.+.|.... ..|+.+.|...|++++...|+++..|...+..+..
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~  215 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            455666677788899999999999999998 8888888887644 46889999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHhhccccc
Q 019475          317 LGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       317 ~~~~~~A~~~~~~al~l~~~  336 (340)
                      .|+++.|...|++|++..|.
T Consensus       216 ~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         216 LNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             TCCHHHHHHHHHHHHHSSSS
T ss_pred             cCChHHHHHHHHHHHHhCCC
Confidence            99999999999999987653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=1.6e-06  Score=67.31  Aligned_cols=67  Identities=13%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhh-------hhhCCC
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQA-------QVVSPD  302 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-------l~l~p~  302 (340)
                      ...+...+..+...|+|++|+..++++++++|. +..+|.+++.+|..+|++.+|++.|+++       +.++|.
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            456778899999999999999999999999999 9999999999999999999999999998       567776

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.19  E-value=7.4e-06  Score=67.32  Aligned_cols=97  Identities=14%  Similarity=0.116  Sum_probs=84.9

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCCCchHHHHHH
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALYLQ  310 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~  310 (340)
                      ...+...|..++.+|+|++|+++|++|.+.  . +..+++++|.+|..    ..++..|...++++....  ++.+.+.+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--K-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            356888999999999999999999999875  5 78999999999998    779999999999987655  88999999


Q ss_pred             HHHHHh----cCChHHHHHHHHHhhccccc
Q 019475          311 AACLFS----LGMENDARETLKDGTNLEAK  336 (340)
Q Consensus       311 g~~~~~----~~~~~~A~~~~~~al~l~~~  336 (340)
                      |.++..    ..+.+.|...|+.+.+.++.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            998875    57899999999999877654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=7.7e-06  Score=69.02  Aligned_cols=100  Identities=9%  Similarity=-0.059  Sum_probs=88.4

Q ss_pred             hHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCCh-hHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHH-
Q 019475          237 NSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSP-TVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACL-  314 (340)
Q Consensus       237 ~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~-  314 (340)
                      -+...+......|++++|...|+++|+..|. +. .+|...+....+.|++++|...|+++++..|.....|...|... 
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~-~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~  179 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3455566677889999999999999999998 54 57899999999999999999999999999999999999999875 


Q ss_pred             HhcCChHHHHHHHHHhhcccccc
Q 019475          315 FSLGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       315 ~~~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ...|+.+.|...|+++++.+|..
T Consensus       180 ~~~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         180 YCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HhccCHHHHHHHHHHHHHhhhhh
Confidence            45789999999999999988764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.08  E-value=1.5e-05  Score=58.36  Aligned_cols=85  Identities=9%  Similarity=-0.056  Sum_probs=74.5

Q ss_pred             hcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh----cC
Q 019475          247 RAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS----LG  318 (340)
Q Consensus       247 ~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~----~~  318 (340)
                      ...++++|+..|+++.+.  . ++.+.+++|..|..    ..++++|+..|+++.+.  .++.+.+++|.+|..    ..
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g-~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--N-SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred             cccCHHHHHHHHhhhhcc--c-chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCC
Confidence            346899999999999875  5 78999999999987    57899999999999886  479999999999987    57


Q ss_pred             ChHHHHHHHHHhhccccc
Q 019475          319 MENDARETLKDGTNLEAK  336 (340)
Q Consensus       319 ~~~~A~~~~~~al~l~~~  336 (340)
                      ++++|+..|++|.++...
T Consensus       110 d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         110 NEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHCCCH
Confidence            999999999999987654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.85  E-value=3.5e-05  Score=63.11  Aligned_cols=96  Identities=21%  Similarity=0.133  Sum_probs=80.2

Q ss_pred             hHHHhHhHHhh----cCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHh----cCChHHHHHHHHhhhhhCCCchHHHH
Q 019475          237 NSKKHGDTAFR----AKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLM----NDMPQEALGDAMQAQVVSPDWPTALY  308 (340)
Q Consensus       237 ~~~~~g~~~~~----~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~  308 (340)
                      .+...|..+..    ..+...+...++.+.+.  . ++.+.+++|.+|..    .+++++|+..|+++.+..  ++.+++
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g-~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~  218 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACDL--K-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCF  218 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhccccc--c-ccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHH
Confidence            34455655654    56788999999999864  5 79999999999998    679999999999998884  799999


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHhhcccccc
Q 019475          309 LQAACLFS----LGMENDARETLKDGTNLEAKK  337 (340)
Q Consensus       309 ~~g~~~~~----~~~~~~A~~~~~~al~l~~~~  337 (340)
                      ++|.+|..    .+++++|+++|++|.+++.+.
T Consensus       219 ~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         219 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            99999986    558999999999999887653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.70  E-value=6.1e-05  Score=54.87  Aligned_cols=80  Identities=11%  Similarity=-0.048  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHh----cCChHHHH
Q 019475          249 KDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFS----LGMENDAR  324 (340)
Q Consensus       249 g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~----~~~~~~A~  324 (340)
                      .|+++|+..|+++.+..   ++.+.++++.  ....++++|+..++++.+.  +++.+.+.+|..|..    ..++++|+
T Consensus         7 kd~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            47899999999999873   5666666664  4567899999999999875  589999999999886    56899999


Q ss_pred             HHHHHhhcccc
Q 019475          325 ETLKDGTNLEA  335 (340)
Q Consensus       325 ~~~~~al~l~~  335 (340)
                      +.|+++.+.+.
T Consensus        80 ~~~~~aa~~g~   90 (133)
T d1klxa_          80 QYYSKACGLND   90 (133)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHhhhhccCc
Confidence            99999987654

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.16  E-value=0.0056  Score=50.96  Aligned_cols=28  Identities=21%  Similarity=0.172  Sum_probs=25.3

Q ss_pred             ceecccCCCCeEEcCCCCeEEecccCcc
Q 019475           26 ALYHDLNAYRILFDKDGNPRLSSFGLMK   53 (340)
Q Consensus        26 iih~dlkp~Nil~~~~~~~kl~Dfg~~~   53 (340)
                      +||+|+.+.||+++.+...-|.||+.+.
T Consensus       185 iIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         185 VIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCcchhhhhcccccceeEecccccc
Confidence            9999999999999988777899999753

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.73  E-value=0.02  Score=45.79  Aligned_cols=28  Identities=14%  Similarity=0.087  Sum_probs=24.3

Q ss_pred             ceecccCCCCeEEcCCCCeEEecccCcc
Q 019475           26 ALYHDLNAYRILFDKDGNPRLSSFGLMK   53 (340)
Q Consensus        26 iih~dlkp~Nil~~~~~~~kl~Dfg~~~   53 (340)
                      ++|+|+.|.||+++.++.+-|+||+.+.
T Consensus       185 l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         185 FSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             EECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EEEeeccCcceeecCCceEEEeechhcc
Confidence            7899999999999977666799999754

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=92.16  E-value=0.02  Score=45.59  Aligned_cols=28  Identities=11%  Similarity=0.058  Sum_probs=24.5

Q ss_pred             ceecccCCCCeEEcCCCCeEEecccCcc
Q 019475           26 ALYHDLNAYRILFDKDGNPRLSSFGLMK   53 (340)
Q Consensus        26 iih~dlkp~Nil~~~~~~~kl~Dfg~~~   53 (340)
                      ++|+|+.|.||+++.+..+-|+||+.+.
T Consensus       177 liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         177 VTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             EEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            7999999999999987667899999753

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.16  E-value=0.12  Score=32.42  Aligned_cols=27  Identities=19%  Similarity=0.150  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhc
Q 019475          306 ALYLQAACLFSLGMENDARETLKDGTN  332 (340)
Q Consensus       306 a~~~~g~~~~~~~~~~~A~~~~~~al~  332 (340)
                      -+-+++..+...|+|+||++++++|.+
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556666666666666666666543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.04  E-value=0.19  Score=33.00  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=27.8

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhc
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFID  263 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~  263 (340)
                      ....+..+..+|..+-..|+|++|+.+|.+||+
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345577888899999999999999999999875

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=89.83  E-value=0.066  Score=45.74  Aligned_cols=27  Identities=11%  Similarity=0.076  Sum_probs=23.6

Q ss_pred             ceecccCCCCeEEcCCCCeEEecccCcc
Q 019475           26 ALYHDLNAYRILFDKDGNPRLSSFGLMK   53 (340)
Q Consensus        26 iih~dlkp~Nil~~~~~~~kl~Dfg~~~   53 (340)
                      ++|||+.|.|||++.++ ++|+||..+.
T Consensus       225 LiHGDl~~gNIlv~~~~-~~vID~E~a~  251 (392)
T d2pula1         225 LIHGDLHTGSIFASEHE-TKVIDPEFAF  251 (392)
T ss_dssp             EECSCCCGGGEEECSSC-EEECCCTTCE
T ss_pred             eeccCCcCCceeEcCCc-eEEechhhcc
Confidence            89999999999998764 8999998754

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=89.37  E-value=0.15  Score=42.14  Aligned_cols=27  Identities=26%  Similarity=0.324  Sum_probs=22.3

Q ss_pred             ceecccCCCCeEEcCCCCeEEecccCccc
Q 019475           26 ALYHDLNAYRILFDKDGNPRLSSFGLMKN   54 (340)
Q Consensus        26 iih~dlkp~Nil~~~~~~~kl~Dfg~~~~   54 (340)
                      +||+|+.+.|||++++  ..++||+-+..
T Consensus       194 liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         194 RLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             ECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             eecCCCCcccEEEeCC--ceEEechhccc
Confidence            8999999999999743  46899997653

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.44  E-value=0.25  Score=30.96  Aligned_cols=29  Identities=17%  Similarity=0.344  Sum_probs=22.9

Q ss_pred             HHhHHHhHhHHhhcCCHHHHHHHHHhhhc
Q 019475          235 TLNSKKHGDTAFRAKDFSTAIDCYTQFID  263 (340)
Q Consensus       235 ~~~~~~~g~~~~~~g~~~~A~~~~~~ai~  263 (340)
                      +-..-.++..+.+.|+|++||+++++|..
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33456778888999999999999887763

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=0.19  Score=31.62  Aligned_cols=33  Identities=12%  Similarity=0.341  Sum_probs=27.4

Q ss_pred             HHHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhc
Q 019475          231 QMQETLNSKKHGDTAFRAKDFSTAIDCYTQFID  263 (340)
Q Consensus       231 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~  263 (340)
                      ....+..+..+|...-..|+|.+|+.+|.+|++
T Consensus         7 ~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~   39 (77)
T d1wr0a1           7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ   39 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445677888888888899999999999988885

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=85.36  E-value=2.1  Score=36.53  Aligned_cols=87  Identities=15%  Similarity=0.034  Sum_probs=63.1

Q ss_pred             HHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChHHHHHHHHhhhhhCCCchHHHHHHHHHHHhcCChHHH
Q 019475          244 TAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPDWPTALYLQAACLFSLGMENDA  323 (340)
Q Consensus       244 ~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~~~~~~A  323 (340)
                      .++..+....|...+........+  ....-.++...+..+++..+...+...-.-....+.+.|.+|.++..+|+.++|
T Consensus       261 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A  338 (450)
T d1qsaa1         261 RLMGNDVTDEQAKWRDDAIMRSQS--TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEA  338 (450)
T ss_dssp             TSCSTTCCHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCchHHHHHHHHhhcccccc--hHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhH
Confidence            344567778888877777665444  443333444456678999998888765433334578999999999999999999


Q ss_pred             HHHHHHhhc
Q 019475          324 RETLKDGTN  332 (340)
Q Consensus       324 ~~~~~~al~  332 (340)
                      ...|+.+..
T Consensus       339 ~~~~~~~a~  347 (450)
T d1qsaa1         339 KEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998764

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.14  E-value=0.36  Score=42.38  Aligned_cols=55  Identities=2%  Similarity=0.004  Sum_probs=46.2

Q ss_pred             HHHHHhHHHhHhHHhhcCCHHHHHHHHHhhhcCCCCCChhHhhhhhHHHHhcCChH
Q 019475          232 MQETLNSKKHGDTAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQ  287 (340)
Q Consensus       232 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ai~~~p~~~~~~~~~~~~~~~~~~~~~  287 (340)
                      +..++.+.+++..++.+|+|+.|.+..+.++..+|+ |..+..-++.+|..+|.-.
T Consensus       427 ~GG~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~-~~~ar~l~a~~~~~l~~~~  481 (505)
T d2cfua2         427 MGGAERLLEQARASYARGEYRWVVEVVNRLVFAEPD-NRAARELQADALEQLGYQA  481 (505)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhC
Confidence            334668889999999999999999999999999999 9998888888887765433