Citrus Sinensis ID: 019522
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 340 | 2.2.26 [Sep-21-2011] | |||||||
| Q921Y4 | 450 | Major facilitator superfa | yes | no | 0.85 | 0.642 | 0.428 | 1e-55 | |
| Q6N075 | 450 | Major facilitator superfa | yes | no | 0.85 | 0.642 | 0.428 | 2e-54 | |
| Q0VC03 | 450 | Major facilitator superfa | yes | no | 0.85 | 0.642 | 0.424 | 6e-54 | |
| Q5R542 | 450 | Major facilitator superfa | yes | no | 0.85 | 0.642 | 0.421 | 4e-53 | |
| Q1KKV8 | 480 | Major facilitator superfa | N/A | no | 0.858 | 0.608 | 0.380 | 3e-52 | |
| Q6DG19 | 481 | Major facilitator superfa | yes | no | 0.891 | 0.629 | 0.367 | 2e-50 | |
| Q08B29 | 451 | Major facilitator superfa | N/A | no | 0.773 | 0.583 | 0.388 | 3e-46 | |
| Q28E13 | 452 | Major facilitator superfa | yes | no | 0.85 | 0.639 | 0.372 | 7e-43 |
| >sp|Q921Y4|MFSD5_MOUSE Major facilitator superfamily domain-containing protein 5 OS=Mus musculus GN=Mfsd5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 181/299 (60%), Gaps = 10/299 (3%)
Query: 6 YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
YL F L A LELS+ R ++ +F F+ ++ VY L +A DWLQ PY+Y
Sbjct: 6 YLSFVGLLASCLGLELSRCRARPPGRACSNPSFLQFQLDFYQVYFLALAADWLQAPYLYK 65
Query: 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
LY Y F +G+I L++ G S++LFG + SL D GRK++CV + LTY L CITK S
Sbjct: 66 LYQHYHFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCITKLSQ 125
Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
Y +L++GR LGG++T+LLFSAFE+W + EH +R F +W+ TF++A F N ++A+
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFW-NHVLAVA 184
Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
+G+ + LGPVAPF AA LA+ + L +W ENY + G
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALTGALALRNWGENY---DRQRAFSKTCAGGLR 241
Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
+ SD ++ LLG IQ+LFE ++ FVFLWTP L P+ P G +F++FM AS+LGSSL
Sbjct: 242 CLLSDRRVLLLGVIQALFESVIFIFVFLWTPVLDPHGA--PLGIVFSSFMAASLLGSSL 298
|
Mus musculus (taxid: 10090) |
| >sp|Q6N075|MFSD5_HUMAN Major facilitator superfamily domain-containing protein 5 OS=Homo sapiens GN=MFSD5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 181/299 (60%), Gaps = 10/299 (3%)
Query: 6 YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
YL F L A LELS+ R ++ +F F+ ++ VY L +A DWLQ PY+Y
Sbjct: 6 YLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65
Query: 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
LY Y F +G+I L++ G S++LFG + SL D GRK +CV + LTY L C+TK S
Sbjct: 66 LYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQ 125
Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
Y +L++GR LGG++T+LLFSAFE+W + EH +R F +W+ TF++A F N ++A++
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAF-WNHVLAVV 184
Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
+G+ + LGPVAPF AA LA+ + L +W ENY + G
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLR 241
Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
+ SD ++ LLG IQ+LFE ++ FVFLWTP L P+ P G IF++FM AS+LGSSL
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSFMAASLLGSSL 298
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Homo sapiens (taxid: 9606) |
| >sp|Q0VC03|MFSD5_BOVIN Major facilitator superfamily domain-containing protein 5 OS=Bos taurus GN=MFSD5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 180/299 (60%), Gaps = 10/299 (3%)
Query: 6 YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
YL F L A LELS+ R ++ +F F+ ++ VY L +A DWLQ PY+Y
Sbjct: 6 YLAFVVLLASCLGLELSRCRAKPSGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65
Query: 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
LY Y F + +I L++ G S++LFG + SL D GRK++CV + LTY L C+TK S
Sbjct: 66 LYQHYHFLEAQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCLTKLSR 125
Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
Y +L++GR LGG++T+LLFSAFE+W + EH +R F +W+ TF++A F N ++A+
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHLERHDFPTEWIPATFARAAF-WNHVLAVA 184
Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
+G+ + LGPVAPF AA LA+ + L +W ENY + G
Sbjct: 185 AGVAAEAVACWMGLGPVAPFVAAIPLLALAGALALHNWGENY---DRQRAFSRTCAGGLR 241
Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
+ SD ++ LLG IQ+LFE ++ FVFLWTP L P+ P G IF++FM AS+LGSSL
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSFMAASLLGSSL 298
|
Bos taurus (taxid: 9913) |
| >sp|Q5R542|MFSD5_PONAB Major facilitator superfamily domain-containing protein 5 OS=Pongo abelii GN=MFSD5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 180/299 (60%), Gaps = 10/299 (3%)
Query: 6 YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
YL F L A LELS+ R ++ +F + ++ VY L +A DWLQ PY+Y
Sbjct: 6 YLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRSQLDFYQVYFLALAADWLQAPYLYK 65
Query: 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
LY Y F +G+I L++ G S++LFG + SL D GRK +CV + LTY L C+TK S
Sbjct: 66 LYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQ 125
Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
Y +L++GR LGG++T+LLFSAFE+W + EH +R F +W+ TF++A F N ++A++
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPTEWIPATFARAAF-WNHVLAVV 184
Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
+G+ + LGPVAPF AA LA+ + L +W ENY + G
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLR 241
Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
+ SD ++ LLG IQ+LFE ++ FVFLWTP L P+ P G +F++FM AS+LGSSL
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIVFSSFMAASLLGSSL 298
|
Pongo abelii (taxid: 9601) |
| >sp|Q1KKV8|MFSD5_TAKRU Major facilitator superfamily domain-containing protein 5 OS=Takifugu rubripes GN=mfsd5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 173/321 (53%), Gaps = 29/321 (9%)
Query: 6 YLVFGALGAVVAALELSKTNKDRINTSSA----FNSFKNNYLLVYSLMMAGDWLQGPYVY 61
Y +L A+ LEL+ +S+A F F+ +L Y L + DWLQGPY+Y
Sbjct: 6 YFAVISLLALCVGLELTARRLTPPESSAAVNPAFRRFQATFLRAYLLALWADWLQGPYLY 65
Query: 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHS 121
LY Y F + +I L++ G S +LF G L+ GR+ C+ +CL+Y C+TK S
Sbjct: 66 KLYRHYSFLESQIAILYVCGLASCVLFAPFSGWLSQALGRRHMCIFFCLSYATCCLTKLS 125
Query: 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEHNK-RGFEQQWLSITFSKAIFLGNGLVAI 180
Y +L++GRILGG++TSLL + FESW V H + F ++W+ TF+KA +GL A+
Sbjct: 126 RDYFVLIVGRILGGLSTSLLTTTFESWYVHHHVEIHDFPKEWIPTTFTKAATWNHGL-AV 184
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD--PSESKDLL----- 233
+GL NLL + LGPVAPF A FLA +L+ W + + P K L
Sbjct: 185 GAGLVANLLAEWLHLGPVAPFLLAVPFLACCAWFVLTDWAKEEAEKSPEGIKQTLPLGTL 244
Query: 234 ----TQFRGAAV----------AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279
T A + SD+++ LLG +Q+LFE +Y F+FLWTP L P+
Sbjct: 245 NGGVTHLSARARFSRSCSDGLRCMLSDKRVMLLGGVQALFESVLYIFIFLWTPVLDPHGS 304
Query: 280 EIPHGFIFATFMLASMLGSSL 300
P G +F+ FM ASM+GS L
Sbjct: 305 --PLGIVFSCFMAASMVGSLL 323
|
Takifugu rubripes (taxid: 31033) |
| >sp|Q6DG19|MFSD5_DANRE Major facilitator superfamily domain-containing protein 5 OS=Danio rerio GN=mfsd5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 179/337 (53%), Gaps = 34/337 (10%)
Query: 6 YLVFGALGAVVAALE-------LSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGP 58
YL F L + ALE LS+ + + + AF F+ +L Y L + DWLQGP
Sbjct: 6 YLAFIVLAGLCVALEITARRLTLSQATQTAV-ANPAFQRFQKLFLKAYLLALWADWLQGP 64
Query: 59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT 118
Y+Y LY Y F + +I L++ G S +LF + G L GR++ C+ +CL Y + CIT
Sbjct: 65 YLYKLYRHYNFLESQIAILYVCGLASCVLFAPVAGWLPQFLGRRQTCLLFCLAYSVCCIT 124
Query: 119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGL 177
K S Y +L++GR+LGG++TSLL + FE+W V H + F ++W+ +TF K GL
Sbjct: 125 KLSQDYFMLILGRVLGGLSTSLLTTTFEAWYVHGHVDIHDFPKEWIPVTFGKVANWNYGL 184
Query: 178 VAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN------YGD------ 225
A+ +GL NL + LGPVAPF A LA +LS W + GD
Sbjct: 185 -AVGAGLVANLFAEWLGLGPVAPFLLAIPSLAACAWFVLSEWGQEDKQEGMNGDKNAPLL 243
Query: 226 -----PSESKDLLTQFRGAAV----AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP 276
P +F + V + SD ++ LLG +Q+LFE +Y FVFLWTP L P
Sbjct: 244 NSLNTPKLQLSARARFWRSCVDGLRCLLSDRRVMLLGGVQALFESVLYIFVFLWTPVLDP 303
Query: 277 NDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVE 313
+ P G +F++ M A+M GS+L RL +P R++
Sbjct: 304 HGP--PLGIVFSSLMAATMAGSTL-FRLATSAPYRLQ 337
|
Danio rerio (taxid: 7955) |
| >sp|Q08B29|MFSD5_XENLA Major facilitator superfamily domain-containing protein 5 OS=Xenopus laevis GN=mfsd5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/270 (38%), Positives = 160/270 (59%), Gaps = 7/270 (2%)
Query: 32 SSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTI 91
+ AF F+ ++ Y +A DWLQGPY+Y LY Y F +G+I +++ GFG+S+ G +
Sbjct: 37 NPAFRQFQYDFYRTYFPALAADWLQGPYLYKLYQHYHFLEGQIAIIYVCGFGASVFAGLV 96
Query: 92 VGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVA 151
L + GR+++C+ +CL S + K S +Y +LM GR+LGG ++SLLFS FE+W
Sbjct: 97 SVPLTSRLGRRKSCILFCLLLSASYLCKLSQEYFVLMTGRVLGGFSSSLLFSCFEAWYTH 156
Query: 152 EH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210
EH + F +WL TF++A NG +AI +G+ N+ + LGP +P A L +
Sbjct: 157 EHAEQHDFPAEWLPHTFTRAA-AWNGGIAIAAGITANVCAEWLGLGPASPSVLAVPLLVL 215
Query: 211 GMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLW 270
+V+++ W ENYG S + + + D ++ LLG IQ+LFE +Y F+FLW
Sbjct: 216 SVVLVIREWDENYGQTSSFRRVCGD---GLRCLLRDRRVLLLGTIQALFESVVYIFIFLW 272
Query: 271 TPALSPNDEEIPHGFIFATFMLASMLGSSL 300
TP L P++ P G F++FM AS +GSSL
Sbjct: 273 TPVLDPHNA--PLGIAFSSFMAASAVGSSL 300
|
Xenopus laevis (taxid: 8355) |
| >sp|Q28E13|MFSD5_XENTR Major facilitator superfamily domain-containing protein 5 OS=Xenopus tropicalis GN=mfsd5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 170/301 (56%), Gaps = 12/301 (3%)
Query: 6 YLVFGALGAVVAALELSKTNKDRINTSSA-----FNSFKNNYLLVYSLMMAGDWLQGPYV 60
Y V L A+ A LE S + +S+A F F+ ++ Y +A DWLQGPY+
Sbjct: 6 YFVLVGLIALWAVLEFSACHSKPSTSSNAVGNPAFRQFQYDFYRTYFPALAADWLQGPYL 65
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
Y LY Y F +G+I +++ GFG+S+ G + L + GR+++C+ +CL S + K
Sbjct: 66 YKLYQHYHFLEGQIAIIYVCGFGASVFAGLVSAPLTSRLGRRKSCILFCLLLSASYLCKL 125
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVA 179
S +Y +L+ GR+LGG ++SLLFS+FE+W EH + F +WL TF++A NG +A
Sbjct: 126 SQEYFVLITGRVLGGFSSSLLFSSFEAWYTHEHAEQHDFPAEWLPHTFTRAA-AWNGGIA 184
Query: 180 ILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGA 239
I +G+ N + LGP +P A L + + +++ W ENYG S + +
Sbjct: 185 IAAGVIANACAEWLGLGPASPSVLAVPLLVLSVALVIREWDENYGQTSSFRRVCGD---G 241
Query: 240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSS 299
+ D ++ LLG IQ+LFE +Y F+FLWTP L P++ P G F++FM AS GSS
Sbjct: 242 LRCLLRDRRVLLLGTIQALFESVVYIFIFLWTPVLDPHN--TPLGIAFSSFMAASAAGSS 299
Query: 300 L 300
L
Sbjct: 300 L 300
|
Xenopus tropicalis (taxid: 8364) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 340 | ||||||
| 255549256 | 460 | conserved hypothetical protein [Ricinus | 0.982 | 0.726 | 0.925 | 1e-180 | |
| 4469023 | 420 | putative protein [Arabidopsis thaliana] | 0.988 | 0.8 | 0.901 | 1e-180 | |
| 224120908 | 459 | predicted protein [Populus trichocarpa] | 0.982 | 0.727 | 0.919 | 1e-179 | |
| 449456403 | 459 | PREDICTED: major facilitator superfamily | 0.982 | 0.727 | 0.907 | 1e-178 | |
| 18417054 | 460 | major facilitator protein [Arabidopsis t | 0.985 | 0.728 | 0.901 | 1e-178 | |
| 225455290 | 460 | PREDICTED: major facilitator superfamily | 0.985 | 0.728 | 0.895 | 1e-178 | |
| 385137884 | 460 | major facilitator protein, partial [Arab | 0.985 | 0.728 | 0.901 | 1e-178 | |
| 297803322 | 460 | hypothetical protein ARALYDRAFT_913755 [ | 0.985 | 0.728 | 0.901 | 1e-178 | |
| 224132678 | 459 | predicted protein [Populus trichocarpa] | 0.982 | 0.727 | 0.904 | 1e-178 | |
| 356509214 | 459 | PREDICTED: major facilitator superfamily | 0.982 | 0.727 | 0.904 | 1e-176 |
| >gi|255549256|ref|XP_002515682.1| conserved hypothetical protein [Ricinus communis] gi|223545225|gb|EEF46734.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 309/334 (92%), Positives = 326/334 (97%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+FFY+VFG LGAVVAALELSKTNKDRINTS AFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MEVFFYMVFGGLGAVVAALELSKTNKDRINTSPAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
Y+LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC+TYC+TYILSCITKH
Sbjct: 61 YFLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQYK+LMIGR+LGGIATSLLFSAFESWLVAEHNKRGF+QQWLS+TFSKAIFLGNGL+AI
Sbjct: 121 SPQYKVLMIGRVLGGIATSLLFSAFESWLVAEHNKRGFDQQWLSLTFSKAIFLGNGLIAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
LSGLFGNLLVD+F+LGPVAPFDAAACFLAIGM II SSWTEN+GD SESKDLLTQFRGAA
Sbjct: 181 LSGLFGNLLVDTFALGPVAPFDAAACFLAIGMAIIFSSWTENFGDHSESKDLLTQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
+AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 MAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334
ASRLMA S PRVESYMQIVFVVSS+SL+LPI T+
Sbjct: 301 ASRLMAHSSPRVESYMQIVFVVSSISLMLPIATN 334
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4469023|emb|CAB38284.1| putative protein [Arabidopsis thaliana] gi|7269626|emb|CAB81422.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/336 (90%), Positives = 325/336 (96%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
++GLFGNLLVD+FSLGPVAPFDAAACFL IGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLTIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSVC 336
ASRL++RS P+VESYMQIVF+VS +LLLPI+ + C
Sbjct: 301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPILMTAC 336
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120908|ref|XP_002318449.1| predicted protein [Populus trichocarpa] gi|118483361|gb|ABK93582.1| unknown [Populus trichocarpa] gi|222859122|gb|EEE96669.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 307/334 (91%), Positives = 323/334 (96%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME F+YLVFGAL AVV +ELSKT KDRINTS AFNSFKNNYL+VYSLMMAGDWLQGPYV
Sbjct: 1 MEAFYYLVFGALSAVVLGIELSKTTKDRINTSPAFNSFKNNYLVVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
Y+LY+TYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGR+RACVTYC+TYILSCITKH
Sbjct: 61 YFLYTTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRRRACVTYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQY+ILMIGRILGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYRILMIGRILGGIATSLLFSSFESWLVAEHNKRGFEQQWLSLTFSKAIFLGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
LSGLFGNLLVD+F LGPVAPFDAAACFLAIGM II+SSW+ENYGDPSE+KDLL QFRGAA
Sbjct: 181 LSGLFGNLLVDTFQLGPVAPFDAAACFLAIGMAIIMSSWSENYGDPSENKDLLAQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334
ASRLMARS PRVESYMQIVFVVSS SLLLPIV+S
Sbjct: 301 ASRLMARSSPRVESYMQIVFVVSSASLLLPIVSS 334
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456403|ref|XP_004145939.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Cucumis sativus] gi|449497371|ref|XP_004160383.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/334 (90%), Positives = 325/334 (97%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+F++LVFGAL VV ALEL+KTNKDRINT SAFN+FKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MEIFYFLVFGALSLVVVALELTKTNKDRINTPSAFNAFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
YYLYS YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC+TYC+TYILSC+TKH
Sbjct: 61 YYLYSQYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCVTKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SP+YK+LM+GR+LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI
Sbjct: 121 SPEYKVLMLGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
++GLFGN+LVDS SLGPVAPFDAAACFLAIGM II+SSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNVLVDSLSLGPVAPFDAAACFLAIGMAIIMSSWTENYGDPSENKDLLTQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+E+IPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNNEDIPHGFIFATFMLASMLGSSL 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334
ASRLMAR+ P+VESYMQIVFVVSS SL+LPIVTS
Sbjct: 301 ASRLMARNTPKVESYMQIVFVVSSASLVLPIVTS 334
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18417054|ref|NP_567786.1| major facilitator protein [Arabidopsis thaliana] gi|13272473|gb|AAK17175.1|AF325107_1 putative protein [Arabidopsis thaliana] gi|16930439|gb|AAL31905.1|AF419573_1 AT4g27720/T29A15_210 [Arabidopsis thaliana] gi|15912261|gb|AAL08264.1| AT4g27720/T29A15_210 [Arabidopsis thaliana] gi|21536852|gb|AAM61184.1| putative transporter [Arabidopsis thaliana] gi|27764934|gb|AAO23588.1| At4g27720/T29A15_210 [Arabidopsis thaliana] gi|332659985|gb|AEE85385.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 302/335 (90%), Positives = 325/335 (97%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
++GLFGNLLVD+FSLGPVAPFDAAACFL IGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLTIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSV 335
ASRL++RS P+VESYMQIVF+VS +LLLPI+ ++
Sbjct: 301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPILMTL 335
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455290|ref|XP_002274807.1| PREDICTED: major facilitator superfamily domain-containing protein 5 [Vitis vinifera] gi|302143948|emb|CBI23053.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/335 (89%), Positives = 327/335 (97%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+F++LVFGAL AVVA +ELSK NKDR+NT++AFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MEVFYFLVFGALSAVVAVIELSKNNKDRVNTTTAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
Y+LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61 YFLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQY+ILM+GR+LGGIATSLLFSAFESWLVAEHNKRGFEQQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYRILMVGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSVTFSKAIFLGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
LSGLFGNLLVD+ SLGPVAPFDAAACFLA+GM +ILSSW+ENYGDPSE+KDLLTQF+GAA
Sbjct: 181 LSGLFGNLLVDNLSLGPVAPFDAAACFLAVGMAVILSSWSENYGDPSENKDLLTQFKGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+EEIPHGFIFATFMLASMLGSS+
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEEIPHGFIFATFMLASMLGSSV 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSV 335
ASRL+AR+ +VESYMQIVFV+SS SLLLPIVT++
Sbjct: 301 ASRLLARASLKVESYMQIVFVISSASLLLPIVTNI 335
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|385137884|gb|AFI41203.1| major facilitator protein, partial [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 302/335 (90%), Positives = 325/335 (97%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
++GLFGNLLVD+FSLGPVAPFDAAACFLAIGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSV 335
ASRL++RS P+VE YMQIVF+VS +LLLPI+ ++
Sbjct: 301 ASRLLSRSTPKVEGYMQIVFLVSGAALLLPILMTL 335
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803322|ref|XP_002869545.1| hypothetical protein ARALYDRAFT_913755 [Arabidopsis lyrata subsp. lyrata] gi|297315381|gb|EFH45804.1| hypothetical protein ARALYDRAFT_913755 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 302/335 (90%), Positives = 326/335 (97%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MEVFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
++GLFGNLLVD+FSLGPVAPFDAAACFLAIGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+EEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEEIPHGFIFATFMLASMLGSSL 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSV 335
ASRL++RS P+VESYMQIVF+VS +LLLPI+ ++
Sbjct: 301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPILMTL 335
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132678|ref|XP_002321382.1| predicted protein [Populus trichocarpa] gi|222868378|gb|EEF05509.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 302/334 (90%), Positives = 322/334 (96%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME F+YLVF AL AVV +E+SKT KDRINTS AFNSFKNNYL+VYSLMMAGDWLQGPYV
Sbjct: 1 MEAFYYLVFAALSAVVFGVEISKTTKDRINTSPAFNSFKNNYLVVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
Y+LY+TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR+RACVTYC+TYILSCITKH
Sbjct: 61 YFLYTTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRRRACVTYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQY++LMIGR+LGGIATSLLFS+FESWLVAEHNKRGF+QQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYRVLMIGRVLGGIATSLLFSSFESWLVAEHNKRGFDQQWLSLTFSKAIFLGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
LSGLFGN LVD+F LGPVAPFDAAACFLAIGM +ILSSWTENYGDPSE+KDL+TQFRGAA
Sbjct: 181 LSGLFGNFLVDTFQLGPVAPFDAAACFLAIGMAVILSSWTENYGDPSENKDLITQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSS+
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSI 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334
ASRLMARS PRVESYMQIVF+VSS SLLLPIVTS
Sbjct: 301 ASRLMARSSPRVESYMQIVFIVSSASLLLPIVTS 334
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509214|ref|XP_003523346.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/334 (90%), Positives = 322/334 (96%)
Query: 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+FFY VFG L AVVA +ELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MELFFYTVFGGLAAVVAVMELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
YYLYSTYG+GKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61 YYLYSTYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQYK+LM+GRILGGIATSLLFSAFESWLVAEH KRGF+QQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYKVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFDQQWLSLTFSKAIFLGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
LSGLFGN+LVD+ +LGPVAPFDAA+CFLAIGM IILSSWTEN+GDPSE+KDLLTQFRGAA
Sbjct: 181 LSGLFGNVLVDTLALGPVAPFDAASCFLAIGMAIILSSWTENFGDPSENKDLLTQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334
ASRLM+RS RVESYMQIVF VSS +L+LPI+T+
Sbjct: 301 ASRLMSRSSLRVESYMQIVFAVSSAALMLPILTT 334
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 340 | ||||||
| TAIR|locus:2137707 | 460 | AT4G27720 [Arabidopsis thalian | 0.985 | 0.728 | 0.814 | 1.2e-147 | |
| TAIR|locus:2019429 | 462 | AT1G64650 [Arabidopsis thalian | 0.982 | 0.722 | 0.802 | 6.6e-145 | |
| TAIR|locus:2082971 | 460 | AT3G49310 [Arabidopsis thalian | 0.985 | 0.728 | 0.797 | 4.6e-144 | |
| WB|WBGene00021870 | 432 | Y54G2A.4 [Caenorhabditis elega | 0.870 | 0.685 | 0.495 | 2.6e-70 | |
| UNIPROTKB|Q6N075 | 450 | MFSD5 "Major facilitator super | 0.820 | 0.62 | 0.404 | 7e-54 | |
| MGI|MGI:2145901 | 450 | Mfsd5 "major facilitator super | 0.820 | 0.62 | 0.404 | 8.9e-54 | |
| UNIPROTKB|Q0VC03 | 450 | MFSD5 "Major facilitator super | 0.820 | 0.62 | 0.401 | 4.9e-53 | |
| ZFIN|ZDB-GENE-040718-468 | 481 | mfsd5 "major facilitator super | 0.579 | 0.409 | 0.4 | 6.8e-47 | |
| TAIR|locus:1005716655 | 449 | AT2G23093 "AT2G23093" [Arabido | 0.744 | 0.563 | 0.245 | 4.6e-18 | |
| CGD|CAL0001498 | 496 | HGT18 [Candida albicans (taxid | 0.482 | 0.330 | 0.313 | 8.5e-07 |
| TAIR|locus:2137707 AT4G27720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
Identities = 273/335 (81%), Positives = 292/335 (87%)
Query: 1 MEMFFYLVFXXXXXXXXXXELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+F+YLVF ELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
++GLFGNLLVD+FSLGPVAPFDAAACFL IGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLTIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXX 300
VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
Query: 301 XXXXXXXXPPRVESYMQIVFXXXXXXXXXPIVTSV 335
P+VESYMQIVF PI+ ++
Sbjct: 301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPILMTL 335
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| TAIR|locus:2019429 AT1G64650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 6.6e-145, P = 6.6e-145
Identities = 268/334 (80%), Positives = 290/334 (86%)
Query: 1 MEMFFYLVFXXXXXXXXXXELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+F+++VF ELSK+NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1 MEIFYFVVFGGLAAIVAGLELSKSNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA +TYC+TYILSCITKH
Sbjct: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRASITYCITYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQYK+LM+GR+LGGIATSLLFSAFESWLVAEHNKRGFEQQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSVTFSKAIFLGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
++GLFGN LVDS SLGPVAPFDAAACFLAIGM +I+SSW+ENYGDPSE+KDLLTQF+ AA
Sbjct: 181 IAGLFGNYLVDSLSLGPVAPFDAAACFLAIGMAVIISSWSENYGDPSENKDLLTQFKNAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXX 300
AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+E+IPHGFIFATF
Sbjct: 241 SAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEDIPHGFIFATFMLASMLGSSI 300
Query: 301 XXXXXXXXPPRVESYMQIVFXXXXXXXXXPIVTS 334
P+VESYMQIVF P+VTS
Sbjct: 301 ASRLLAHSSPKVESYMQIVFVISSAALMLPVVTS 334
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| TAIR|locus:2082971 AT3G49310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1408 (500.7 bits), Expect = 4.6e-144, P = 4.6e-144
Identities = 267/335 (79%), Positives = 288/335 (85%)
Query: 1 MEMFFYLVFXXXXXXXXXXELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
ME+F+YLVF ELSKTNKDRINTSS+FNSFKNNYLLV+S+MMAGDWLQGPYV
Sbjct: 1 MEVFYYLVFGVMAAVVAALELSKTNKDRINTSSSFNSFKNNYLLVFSIMMAGDWLQGPYV 60
Query: 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+ YILSCITKH
Sbjct: 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCIVYILSCITKH 120
Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
SPQYK+LM+GRILGGIATSLLFSAFESWL+AEHNKR FEQQWLS+TFSKA+FLGNGLVAI
Sbjct: 121 SPQYKVLMVGRILGGIATSLLFSAFESWLIAEHNKRNFEQQWLSLTFSKAVFLGNGLVAI 180
Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
LSGLFGNLLVD+FS GPVAPFDAAACFLAIGM IIL +W+EN+GDPS+SKDLLTQF+ AA
Sbjct: 181 LSGLFGNLLVDTFSFGPVAPFDAAACFLAIGMAIILGTWSENFGDPSDSKDLLTQFKVAA 240
Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXX 300
+AIASDEKIALLGAIQSLFE SMYTFVFLWTPALSPNDEEIPHGF+FATF
Sbjct: 241 IAIASDEKIALLGAIQSLFEASMYTFVFLWTPALSPNDEEIPHGFVFATFMLASMLGSSL 300
Query: 301 XXXXXXXXPPRVESYMQIVFXXXXXXXXXPIVTSV 335
RVE+YMQIVF PI TSV
Sbjct: 301 AARLMSRSSLRVENYMQIVFLVSAASLLLPITTSV 335
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| WB|WBGene00021870 Y54G2A.4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 151/305 (49%), Positives = 185/305 (60%)
Query: 30 NTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFG 89
N F SF+ YL+VY + +AGDWLQGP+VY LY +YG K +I LFIAGFGSS+LFG
Sbjct: 27 NDDPKFKSFQRTYLIVYMMAVAGDWLQGPHVYALYESYGMSKHQIEILFIAGFGSSLLFG 86
Query: 90 TIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWL 149
T +GS+ADK GR+ C+ Y + Y +CITKH +LMIGR LGGIATS+L+SAFESWL
Sbjct: 87 TFIGSIADKFGRRNNCLMYAILYGGACITKHFGNMPVLMIGRFLGGIATSILYSAFESWL 146
Query: 150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209
+ EHN RGF L FS A LGN L+AI+SG+ + + F G VAPFD A L
Sbjct: 147 IFEHNTRGFSDSLLGTVFSNAA-LGNSLIAIISGVAAQFVAERF--GFVAPFDLALSVLL 203
Query: 210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269
I VII+++W ENYG+ E + F+ A AI D + LG +QSLFEGSMYTFV
Sbjct: 204 IMAVIIMNTWPENYGN--EKAPVKESFQKATQAIREDPNVFCLGLVQSLFEGSMYTFVLE 261
Query: 270 WTPALS--PNDEEIPHGFIFATFXXXXXXXXXXXXXXXXXXPPRVESYMQIVFXXXXXXX 327
WTPALS D IPHG+IFA F P ES+M+ V
Sbjct: 262 WTPALSRAAGDVGIPHGYIFAAFMVATMIGSSVFKLLQQHERP--ESFMRYVLLLAAVCL 319
Query: 328 XXPIV 332
PIV
Sbjct: 320 SMPIV 324
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| UNIPROTKB|Q6N075 MFSD5 "Major facilitator superfamily domain-containing protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 117/289 (40%), Positives = 169/289 (58%)
Query: 6 YLVFXXXXXXXXXXELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
YL F ELS+ R ++ +F F+ ++ VY L +A DWLQ PY+Y
Sbjct: 6 YLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65
Query: 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
LY Y F +G+I L++ G S++LFG + SL D GRK +CV + LTY L C+TK S
Sbjct: 66 LYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQ 125
Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
Y +L++GR LGG++T+LLFSAFE+W + EH +R F +W+ TF++A F N ++A++
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFW-NHVLAVV 184
Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
+G+ + LGPVAPF AA LA+ + L +W ENY + G
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLR 241
Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 290
+ SD ++ LLG IQ+LFE ++ FVFLWTP L P+ P G IF++F
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSF 288
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| MGI|MGI:2145901 Mfsd5 "major facilitator superfamily domain containing 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 117/289 (40%), Positives = 169/289 (58%)
Query: 6 YLVFXXXXXXXXXXELSKTNK---DRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
YL F ELS+ R ++ +F F+ ++ VY L +A DWLQ PY+Y
Sbjct: 6 YLSFVGLLASCLGLELSRCRARPPGRACSNPSFLQFQLDFYQVYFLALAADWLQAPYLYK 65
Query: 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
LY Y F +G+I L++ G S++LFG + SL D GRK++CV + LTY L CITK S
Sbjct: 66 LYQHYHFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCITKLSQ 125
Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
Y +L++GR LGG++T+LLFSAFE+W + EH +R F +W+ TF++A F N ++A+
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFW-NHVLAVA 184
Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
+G+ + LGPVAPF AA LA+ + L +W ENY + G
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALTGALALRNWGENY---DRQRAFSKTCAGGLR 241
Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 290
+ SD ++ LLG IQ+LFE ++ FVFLWTP L P+ P G +F++F
Sbjct: 242 CLLSDRRVLLLGVIQALFESVIFIFVFLWTPVLDPHGA--PLGIVFSSF 288
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| UNIPROTKB|Q0VC03 MFSD5 "Major facilitator superfamily domain-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 116/289 (40%), Positives = 168/289 (58%)
Query: 6 YLVFXXXXXXXXXXELSKTN---KDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
YL F ELS+ R ++ +F F+ ++ VY L +A DWLQ PY+Y
Sbjct: 6 YLAFVVLLASCLGLELSRCRAKPSGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65
Query: 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
LY Y F + +I L++ G S++LFG + SL D GRK++CV + LTY L C+TK S
Sbjct: 66 LYQHYHFLEAQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCLTKLSR 125
Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
Y +L++GR LGG++T+LLFSAFE+W + EH +R F +W+ TF++A F N ++A+
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHLERHDFPTEWIPATFARAAFW-NHVLAVA 184
Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
+G+ + LGPVAPF AA LA+ + L +W ENY + G
Sbjct: 185 AGVAAEAVACWMGLGPVAPFVAAIPLLALAGALALHNWGENY---DRQRAFSRTCAGGLR 241
Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF 290
+ SD ++ LLG IQ+LFE ++ FVFLWTP L P+ P G IF++F
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSF 288
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| ZFIN|ZDB-GENE-040718-468 mfsd5 "major facilitator superfamily domain containing 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 80/200 (40%), Positives = 116/200 (58%)
Query: 21 LSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIA 80
LS+ + + + AF F+ +L Y L + DWLQGPY+Y LY Y F + +I L++
Sbjct: 28 LSQATQTAV-ANPAFQRFQKLFLKAYLLALWADWLQGPYLYKLYRHYNFLESQIAILYVC 86
Query: 81 GFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSL 140
G S +LF + G L GR++ C+ +CL Y + CITK S Y +L++GR+LGG++TSL
Sbjct: 87 GLASCVLFAPVAGWLPQFLGRRQTCLLFCLAYSVCCITKLSQDYFMLILGRVLGGLSTSL 146
Query: 141 LFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA 199
L + FE+W V H + F ++W+ +TF K GL A+ +GL NL + LGPVA
Sbjct: 147 LTTTFEAWYVHGHVDIHDFPKEWIPVTFGKVANWNYGL-AVGAGLVANLFAEWLGLGPVA 205
Query: 200 PFDAAACFLAIGMVIILSSW 219
PF A LA +LS W
Sbjct: 206 PFLLAIPSLAACAWFVLSEW 225
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| TAIR|locus:1005716655 AT2G23093 "AT2G23093" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 64/261 (24%), Positives = 118/261 (45%)
Query: 32 SSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTI 91
SS+F F+ +L +Y+L + L Y +TYG K + G+ ++++ G +
Sbjct: 48 SSSFARFQRWFLAIYTLSSVMEGLLSVYGELELTTYGLSKESMVFYLCVGYSTALVLGPV 107
Query: 92 VGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFS-AFESWLV 150
+G ++D G+K+ C+ YC+ +++ + K + +A L++S FE+WLV
Sbjct: 108 LGVVSDLIGQKKICLLYCVLHLIVGVWKRITMSPSAWFANVFLSLA-GLVYSFGFETWLV 166
Query: 151 AEHNKRGFEQQWLSITFSKAIFLGNGLVAILSG-LFGNLLVDSFSLGPVAPFDAAACFLA 209
EH K+ L+ TF FL + +++ G + N LV +A A+ L+
Sbjct: 167 VEHEKQSQRNDSLNETFWLMTFLESA--SLIGGQVLANWLVGENVQDGIALSATASLLLS 224
Query: 210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269
+ +I + + +D T F + D++I LG Q+ + S F L
Sbjct: 225 VVTIICIVQTAKEPLKTLPFRDYSTAFYAY---VLGDKRIWFLGTSQACLQFSTAVFWIL 281
Query: 270 WTPALSPNDEEIPHGFIFATF 290
W P + + E+ G I+ F
Sbjct: 282 WAPTIVADGREVNLGLIYPCF 302
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| CGD|CAL0001498 HGT18 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 58/185 (31%), Positives = 92/185 (49%)
Query: 73 EIGQLFIAGFGSSMLFGTI-VGSLADKQGRKRACVTYCLTYIL-SCITKHSPQYKILMIG 130
+IG L + F LFG+ VG LADK GRK+ + +CL YI+ S I S Y L++G
Sbjct: 73 QIG-LVTSIFSIGGLFGSFYVGHLADKYGRKKTSLLHCLLYIIGSTINGLSNTYASLLLG 131
Query: 131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSK-AIFLGNGLVAILSGLFGNLL 189
R + G+ SA + + E + L + ++ +I +G +LS + N
Sbjct: 132 RFICGLGAG---SALVITSIYINEVSPIETKGLLGSMNQFSINIGILFTQLLSLNWSNDN 188
Query: 190 VDSFSLGPVAPFDAAACFLAIGMVIILSS-------WTENYGDPSESKDLLTQFRGAAVA 242
+ L F AA F+A+ VI++SS W N GD +E+ +L + RG + +
Sbjct: 189 DWRWLL-----FMAA--FIAVANVIVVSSYLNESPVWLANQGDTAEAFTILHRLRGGSYS 241
Query: 243 IASDE 247
+A+DE
Sbjct: 242 VATDE 246
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00120258 | SubName- Full=Putative uncharacterized protein; (459 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 340 | |||
| pfam05631 | 354 | pfam05631, DUF791, Protein of unknown function (DU | 0.0 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.003 |
| >gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791) | Back alignment and domain information |
|---|
Score = 568 bits (1465), Expect = 0.0
Identities = 269/332 (81%), Positives = 292/332 (87%), Gaps = 1/332 (0%)
Query: 4 FFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYL 63
F+YLVFG L AVVA LEL K +KDR NT FNSFKNNYLLVYS+MMAGDWLQGPYVYYL
Sbjct: 1 FYYLVFGGLAAVVALLELYKRSKDRSNTDPKFNSFKNNYLLVYSMMMAGDWLQGPYVYYL 60
Query: 64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQ 123
YS+YGF KG+IG LFIAGFGSSMLFGTIVGSLADKQGRKRAC+TYC+ YILSCITKHSP
Sbjct: 61 YSSYGFSKGDIGILFIAGFGSSMLFGTIVGSLADKQGRKRACLTYCILYILSCITKHSPN 120
Query: 124 YKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSG 183
YK+LMIGR LGGIATSLLFSAFESWL+AEHNKRGF QWLS TFSKA FLGNGLVAI+SG
Sbjct: 121 YKVLMIGRFLGGIATSLLFSAFESWLIAEHNKRGFSDQWLSTTFSKAAFLGNGLVAIISG 180
Query: 184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAI 243
LF NLL D F GPVAPFDAAACFLAIGM IIL++W+ENYGDPS+ KDL QF+ AA AI
Sbjct: 181 LFANLLADRFGFGPVAPFDAAACFLAIGMAIILNTWSENYGDPSDKKDLKEQFKVAAQAI 240
Query: 244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASR 303
ASD + LG +QSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSS+A+R
Sbjct: 241 ASDPNVFCLGLVQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSVAAR 300
Query: 304 LMARSPPRVESYMQIVFVVSSVSLLLPIVTSV 335
L+ R RVESYMQIVF++S+V L LPIVTSV
Sbjct: 301 LLQRH-LRVESYMQIVFLLSAVCLSLPIVTSV 331
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This family consists of several eukaryotic proteins of unknown function. Length = 354 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 63/298 (21%), Positives = 102/298 (34%), Gaps = 9/298 (3%)
Query: 43 LLVYSLMMAGDWLQGP-YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR 101
L L G L GP YL G EIG L A L + G L+D+ GR
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGR 61
Query: 102 KRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQ 160
+R + L + L + + +L++ R+L G+ LF A + L+A+
Sbjct: 62 RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAA-LIADWFPPEERG 120
Query: 161 QWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT 220
+ L + + G GL A L L G LL F A LA + +L
Sbjct: 121 RALGL-----LSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRP 175
Query: 221 E-NYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279
P +++ A + D + LL A+ +L
Sbjct: 176 PPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLS 235
Query: 280 EIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSVCY 337
+ G + L +G L RL R R + ++ ++ + L + +
Sbjct: 236 ALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESS 293
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Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 4/178 (2%)
Query: 43 LLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK 102
L + L L P + L G + G + A L + G L+D+ GR+
Sbjct: 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR 64
Query: 103 RA-CVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWL--VAEHNKRGFE 159
R + L + S + + +L++GR L G+ L+ A + + +RG
Sbjct: 65 RVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRA 124
Query: 160 QQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILS 217
S F LG L +L+ G + L + A + ++++L+
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWL-FLILAILGLLLALLLLFLLRLLLLLA 181
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 340 | |||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 100.0 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.96 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.95 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.94 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.93 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.93 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.93 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.93 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.93 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.93 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.92 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.92 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.92 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.91 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.91 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.91 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.91 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.91 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.91 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.91 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.9 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.9 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.9 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.9 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.89 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.89 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.89 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.89 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.89 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.89 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.89 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.89 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.88 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.88 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.88 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.88 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.88 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.87 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.87 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.87 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.86 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.86 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.86 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.85 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.85 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.84 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.84 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.83 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.83 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.82 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.81 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.81 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.81 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.8 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.8 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.8 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.8 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.77 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.76 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.76 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.75 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.74 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.74 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.74 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.73 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.72 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.72 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.7 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.7 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.68 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.67 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.66 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.66 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.65 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.65 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.64 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.63 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.61 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.61 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.58 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.58 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.58 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.55 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.54 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.49 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.49 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.44 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.44 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.4 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.39 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.39 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.37 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.37 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.36 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.36 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.35 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.35 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.34 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.34 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.33 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.32 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.32 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.29 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.29 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.25 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.25 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.23 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.22 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.21 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.19 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.19 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.19 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.18 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.16 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.16 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.16 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.15 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.14 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.14 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.13 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.12 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.11 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.11 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.11 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.11 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.1 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.09 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.09 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.08 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.08 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.07 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.05 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.05 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.05 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.04 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.03 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.02 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.01 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.0 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.96 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.96 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.95 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.95 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.94 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.94 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.93 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.92 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.92 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.92 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.92 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.92 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.9 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.9 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.89 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.87 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.86 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.86 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.85 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.83 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.82 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.82 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.82 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.81 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.8 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.79 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.77 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.75 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.75 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.74 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.73 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.7 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.68 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.67 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.66 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.64 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.64 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.61 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.61 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.6 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.59 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.57 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.57 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.56 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.45 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.44 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.4 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.37 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.36 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.32 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.3 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.29 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.29 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.21 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.06 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.98 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.9 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.77 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.73 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.68 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.58 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.4 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.36 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.17 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.15 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 96.97 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 96.83 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.81 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.79 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 96.71 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.68 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.59 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.33 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.17 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 96.09 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 95.8 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.71 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 95.69 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 95.66 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 95.19 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 95.01 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 93.92 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 93.55 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 90.97 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 90.53 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 89.57 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 89.37 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 88.86 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 88.64 | |
| PF13386 | 199 | DsbD_2: Cytochrome C biogenesis protein transmembr | 88.02 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 87.31 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 86.6 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 86.47 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 86.22 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 85.97 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 84.45 | |
| PRK11469 | 188 | hypothetical protein; Provisional | 83.85 |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=253.34 Aligned_cols=330 Identities=63% Similarity=1.076 Sum_probs=293.9
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCcCCCCcccccchhhHHHHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHh
Q 019522 4 FFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFG 83 (340)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 83 (340)
||+..+.++++++..+++.++++++..+++.+++.|+..+.++.+....||+++|+...+++++|+++.|++.++..++.
T Consensus 1 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~f~~Fqr~yl~vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~ 80 (354)
T PF05631_consen 1 FYYLVFGVLAAVCAALELSKRTKDRASTNPAFRRFQRKYLLVYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFA 80 (354)
T ss_pred CchhHHHHHHHHHHHHheecccccccccChHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57889999999999999998888888788889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccccccchHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccchhhHHH
Q 019522 84 SSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWL 163 (340)
Q Consensus 84 ~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~ 163 (340)
.+.+.+++.|.++||+|||+.-+..+++.++++++-..++++.++++|++.|++.+..+....+|++.|+++|+....+.
T Consensus 81 Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L 160 (354)
T PF05631_consen 81 SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWL 160 (354)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999988888999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHH
Q 019522 164 SITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAI 243 (340)
Q Consensus 164 ~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (340)
...+......++.+-++.++.+++.+.+..+.+...||.....+..++..++...|+|+.++.+++.+..++.++..+.+
T Consensus 161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i 240 (354)
T PF05631_consen 161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAI 240 (354)
T ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHH
Confidence 88887666678888889999999999888777778899999888888888887889998876555555556667777888
Q ss_pred hhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 019522 244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVS 323 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 323 (340)
++||+.+.+.....++...+|.++..|.|....++.+.+.|.+++.++.+.++|+.+..++..|- .|....+.....++
T Consensus 241 ~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~-~~~e~~l~~v~~~a 319 (354)
T PF05631_consen 241 LSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS-LRPESLLRYVFAVA 319 (354)
T ss_pred HcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988766677789999999999999999998776654 45556777888888
Q ss_pred HHHHHHHHHhh
Q 019522 324 SVSLLLPIVTS 334 (340)
Q Consensus 324 ~~~~~~~~~~~ 334 (340)
++++.++.+.+
T Consensus 320 a~~l~~pv~~~ 330 (354)
T PF05631_consen 320 AVSLAIPVVTH 330 (354)
T ss_pred HHHHHHHHHHh
Confidence 88888887764
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=227.42 Aligned_cols=334 Identities=90% Similarity=1.431 Sum_probs=306.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhhccCCcCCCCcccccchhhHHHHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHH
Q 019522 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIA 80 (340)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 80 (340)
||-|++.++.++.+++.++|+.+.+++..+.+..+++++...+.+..+.+..||.++|+..++++++|....|+|.++..
T Consensus 1 MevfyylvFggl~a~vagLELSk~nkdRintsssFnsFknnyllVyslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfia 80 (454)
T KOG4332|consen 1 MEVFYYLVFGGLAAVVAGLELSKCNKDRINTSSSFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIA 80 (454)
T ss_pred CeeeehHHHHHHHHHHHHhhhhhcccccccCchhHHHHhhhHHHHHHHHHhhhhhcCceeeeeehhcCccCCccceeeec
Confidence 78899999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchh
Q 019522 81 GFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFE 159 (340)
Q Consensus 81 ~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~ 159 (340)
++...++++.+.|.++||-|||+.-+.-++.+.++++.-.+|++-.++++|.+-|++.+..+....+|+++|+ ++|++.
T Consensus 81 GfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe 160 (454)
T KOG4332|consen 81 GFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE 160 (454)
T ss_pred ccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh
Confidence 9999999999999999999999999888888888888889999999999999999999999999999999998 799999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHH
Q 019522 160 QQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGA 239 (340)
Q Consensus 160 ~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (340)
..|....++-....|+.+-+++++..++.+.+..+.+...+|...+.+..++..+....|.|+.+++.++++...+.+..
T Consensus 161 qqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf~ga 240 (454)
T KOG4332|consen 161 QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQFKGA 240 (454)
T ss_pred HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhHh
Confidence 99999999999999999999999999999999999999999998888877777777788999988888887777777777
Q ss_pred HHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHH
Q 019522 240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIV 319 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 319 (340)
.+.+..|+++.++.....++...+|.++..|.|....+..+.+.+.+++.+.++.++|+-+..++..|-..|....+.+.
T Consensus 241 a~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqiv 320 (454)
T KOG4332|consen 241 ARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIV 320 (454)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHH
Confidence 78889999999999999999999999999999999988888888999999999999999999999888777766677778
Q ss_pred HHHHHHHHHHHHHhh
Q 019522 320 FVVSSVSLLLPIVTS 334 (340)
Q Consensus 320 ~~~~~~~~~~~~~~~ 334 (340)
+.+....+.++.+..
T Consensus 321 f~vs~a~l~Lpilt~ 335 (454)
T KOG4332|consen 321 FLVSIAALLLPILTS 335 (454)
T ss_pred HHHHHHHHHHHHHHh
Confidence 887777777776554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=199.71 Aligned_cols=257 Identities=19% Similarity=0.289 Sum_probs=192.1
Q ss_pred HHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHH
Q 019522 52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG 130 (340)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~ 130 (340)
.+....+.+|++.+|+|+|..+.|++.+.+..+..+++|+...+.||+.||++++....++.++. ++++++||+.+++.
T Consensus 28 tEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~a 107 (394)
T COG2814 28 TEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLA 107 (394)
T ss_pred HHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34444677999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
|++.|+..|..++...+ +..+. ++|++..+......+ ++..+|..+|..+++. |+||..|+..+.+
T Consensus 108 R~~~g~a~G~f~~i~~~-~a~~lvpp~~~~~Aiaiv~~G~t----lA~v~GvPLGt~ig~~------~GWR~~F~~ia~l 176 (394)
T COG2814 108 RALAGLAHGVFWSIAAA-LAARLVPPGKRGRALALVFTGLT----LATVLGVPLGTFLGQL------FGWRATFLAIAVL 176 (394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHcCccchhhHHHHHHHHHH----HHHHHhccHHHHHHHH------hhHHHHHHHHHHH
Confidence 99999999999988755 65543 777775555544444 3333444444444444 5566889998888
Q ss_pred HHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---h
Q 019522 208 LAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---G 284 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 284 (340)
.++.........|+++.++++..+ . ++..+.+|+|+.+.......+.....+.. .+|...++++..|.+. +
T Consensus 177 ~ll~~~~~~~~lP~~~~~~~~~~~-~----~~~~~~l~~p~v~~~l~~t~l~~~g~F~~-ftYi~P~L~~v~g~s~~~vs 250 (394)
T COG2814 177 ALLALLLLWKLLPPSEISGSLPGP-L----RTLLRLLRRPGVLLGLLATFLFMTGHFAL-YTYIRPFLESVAGFSVSAVS 250 (394)
T ss_pred HHHHHHHHHHhCCCccCCCCCCcc-h----hHHHHHhcCchHHHHHHHHHHHHcchhhh-HHhHHHHHHHccCCCHhHHH
Confidence 888887776666711111111111 1 12235688999998877777777777774 7788888888877766 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHH
Q 019522 285 FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL 328 (340)
Q Consensus 285 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 328 (340)
.....+++++++|+.+.|++.|| +.|+ .+.....+..+...
T Consensus 251 ~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~--~l~~~~~l~a~~~l 291 (394)
T COG2814 251 LVLLAFGIAGFIGNLLGGRLADR-GPRR--ALIAALLLLALALL 291 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhccc-cchh--HHHHHHHHHHHHHH
Confidence 66788899999999999999999 6663 44444333333333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=205.07 Aligned_cols=265 Identities=15% Similarity=0.208 Sum_probs=173.3
Q ss_pred hhhHHHHHHHHHHHHHhhh---hHH-HHHHHHhhC---CChhh---hHHHHHHHHhhhhhhhhhhhhccccccchHHHHH
Q 019522 38 FKNNYLLVYSLMMAGDWLQ---GPY-VYYLYSTYG---FGKGE---IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT 107 (340)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~g---~s~~~---~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~ 107 (340)
+++..+....+....+++| .++ .|.+.++++ .++.+ .+..++..+++..+++++.|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4444555666667777777 233 778888874 45554 3455667777777899999999999999999999
Q ss_pred HHHHHHHHh-hhhccchHH--------HHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhh
Q 019522 108 YCLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGN 175 (340)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~ 175 (340)
+..+++++. ++++++++. .+++.|+++|++.|..++...+ ++.|. ++|++..+.... +...|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~~p~~~rg~~~~~~~~----~~~~G~ 173 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT-YMSEVAVEGRKGFYASFQYV----TLIGGQ 173 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH-HHHHhCCCCcccHHHHHHHH----HHHHHH
Confidence 999999988 778888764 6889999999999999998866 88886 566664433333 333344
Q ss_pred hHHHHHHHhhhhhhhc--ccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHH
Q 019522 176 GLVAILSGLFGNLLVD--SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLG 253 (340)
Q Consensus 176 ~ig~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (340)
.++..+...+...+.+ ...|+||.+|.+.++..++..++. ...||+++.+++ + ++.+.+.++++|+|+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~-~~~~e~~~~~~~--~--~~~~~~~~~l~~~~~~~~~~ 248 (432)
T PRK10406 174 LLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLR-RQLDETSQQETR--A--LKEAGSLKGLWRNRRAFIMV 248 (432)
T ss_pred HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHH-hcCCCCchHHHh--h--hcccccHHHHHhhHHHHHHH
Confidence 3444433333322111 123677788988777666554333 334443221111 1 11122355677888877665
Q ss_pred HHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 254 AIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
....+.....++....|.|.|+++..|.+. +.......+...++..+.|+++||++||+
T Consensus 249 ~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~ 310 (432)
T PRK10406 249 LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 554444333344457899999877666654 34445556667788888999999999985
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-25 Score=197.18 Aligned_cols=267 Identities=17% Similarity=0.139 Sum_probs=177.5
Q ss_pred chhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHH
Q 019522 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (340)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (340)
|.+|+.....++....+.++ +...|.+.+|+|+++.+.|++.+..+++..+++++.|+++||+|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 44566666666676677766 34488899999999999999999999999999999999999999999999999999
Q ss_pred HHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 019522 113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (340)
Q Consensus 113 ~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 188 (340)
+++. ++++++|++.+++.|+++|++.+...+.... ++.|+ ++|++..+...... .+|..+++.+++.+...
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~rg~~~~~~~~~~----~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILL-YLTFWFPAYFRARANALFMIAM----PVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhC
Confidence 9988 7789999999999999999999998887755 67775 45666444443333 33333444443333211
Q ss_pred --hhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCC----ccchHHH-HHH---------------------HHHH
Q 019522 189 --LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP----SESKDLL-TQF---------------------RGAA 240 (340)
Q Consensus 189 --l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~---------------------~~~~ 240 (340)
+.+ .++||..|.+.++..++...+.....+|++++. +++++.. +.. ++.+
T Consensus 159 ~~~~~--~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (412)
T TIGR02332 159 DGLMA--LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSML 236 (412)
T ss_pred CCCCC--ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Confidence 011 245667777766655544444433444443221 1110000 000 0111
Q ss_pred HHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccC-CCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN-DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+.+ ++|.++.......+.... +.....|.|.++++ +.+.+. +.......++.+++.++.|+++||+++|+
T Consensus 237 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~ 310 (412)
T TIGR02332 237 REI-FTPAIMLYTLAYFCLTNT-LSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK 310 (412)
T ss_pred HHh-cChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence 222 245565554444444443 44458899999976 334432 45567778889999999999999998775
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=190.67 Aligned_cols=267 Identities=15% Similarity=0.134 Sum_probs=202.0
Q ss_pred ccccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHH
Q 019522 33 SAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY 108 (340)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~ 108 (340)
+.++++|++++...++......+. .-..|.+.+|.++|.+|+|.+.+..++...++..+.|.++||.+.|+.+..+
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 456777788887777777766655 2338999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHh
Q 019522 109 CLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGL 184 (340)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~ 184 (340)
+++.++.. +.+++++.+.+.+..+++|..+|..+|.+.. .++.+ ++||...+..+...+ +|.++.+.+..+
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shN----iGGal~~~~~~l 175 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHN----IGGALAPLVALL 175 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhh----cccchHHHHHHH
Confidence 99999988 8899999999999999999999999999877 77765 778885544444444 444444444321
Q ss_pred hhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCC----------CccchH-H-------HHHHHHHHHHHhhc
Q 019522 185 FGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD----------PSESKD-L-------LTQFRGAAVAIASD 246 (340)
Q Consensus 185 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~-------~~~~~~~~~~~~~~ 246 (340)
.+...+. .||..|+..+++.++..++.....++++++ +++.+. . ....+.-.+.+++|
T Consensus 176 --a~~~~~~--~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~N 251 (448)
T COG2271 176 --AFFAFHG--GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKN 251 (448)
T ss_pred --HHHHhcc--chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcC
Confidence 4444433 455778888887777666655333322110 011110 0 00111234568999
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCC
Q 019522 247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP 309 (340)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g 309 (340)
|.+|.+++...+.+..-+. +..|.|.|+.|..|.+. +...+.+-.++++|++++||++||.-
T Consensus 252 k~iW~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklf 316 (448)
T COG2271 252 KLIWLLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLF 316 (448)
T ss_pred hHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999998888888 59999999988888776 46778888999999999999999984
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=192.92 Aligned_cols=237 Identities=15% Similarity=0.177 Sum_probs=165.1
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.+++|.+.+|+|.|++++|++.+...+...+.+++.|+++||+|||+++..+..+.++++ .+++++|++.+++.|+++|
T Consensus 29 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G 108 (390)
T PRK03545 29 VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA 108 (390)
T ss_pred HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 466899999999999999999999988888889999999999999999999999999988 7889999999999999999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+...+ ++.|. ++|++..+...... . +|..+++.++..+.++.+|+ ..|++.+++.++..
T Consensus 109 ~~~~~~~~~~~~-~i~~~~~~~~r~~~~g~~~~~~----~----~g~~ig~~l~~~l~~~~gw~--~~f~~~~~~~~l~~ 177 (390)
T PRK03545 109 FAHAIFWSITAS-LAIRVAPAGKKAQALSLLATGT----A----LAMVLGLPLGRVIGQYLGWR--TTFLAIGGGALITL 177 (390)
T ss_pred HHHHHHHHHHHH-HHHHhCChhhhhhHHHHHHHHH----H----HHHHHHhhHHHHHHHHhcHH--HHHHHHHHHHHHHH
Confidence 999888777766 65554 56777544443333 3 44444444444444444554 66777666555544
Q ss_pred HHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHH
Q 019522 213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT 289 (340)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 289 (340)
.......|+++++++ +.. ++.++.+|+|+++.......+.....+. ...+.+.+.++..|.+. +.....
T Consensus 178 ~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~~~~~~~ 249 (390)
T PRK03545 178 LLLIKLLPLLPSEHS---GSL----KSLPLLFRRPALVSLYLLTVVVVTAHFT-AYSYIEPFVQQVAGLSENFATLLLLL 249 (390)
T ss_pred HHHHHhCCCCCCCCc---chH----HHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 443333343322111 111 2234567888776544443333333333 35666777666555544 455566
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCc
Q 019522 290 FMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 290 ~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
..++.++++++.+++.||+++|+
T Consensus 250 ~~~~~~~g~~~~g~l~dr~~~~~ 272 (390)
T PRK03545 250 FGGAGIIGSVLFSRLGNRHPSGF 272 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhH
Confidence 77889999999999999998774
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=194.33 Aligned_cols=260 Identities=12% Similarity=0.126 Sum_probs=169.6
Q ss_pred hhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh---hccchHHHHHHHH
Q 019522 56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMIGR 131 (340)
Q Consensus 56 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~---~~~~~~~~l~~~r 131 (340)
..+..|.+++++|.|+.+.|+..+...++..+.+++.|++.||+|||+++..+..+++++. ++ .++++++.+++.|
T Consensus 45 ~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r 124 (438)
T PRK10133 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGL 124 (438)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3677999999999999999999999999999999999999999999999999999999987 53 4688999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhh------------h-c-ccC
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL------------V-D-SFS 194 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l------------~-~-~~~ 194 (340)
+++|+|.+...+..++ ++.|. ++|+...+..+..++ +|..+|+.+++.+.... . + ..+
T Consensus 125 ~l~G~g~g~~~~~~~~-~v~~~~~~~~~~~~~s~~~~~~~----~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~ 199 (438)
T PRK10133 125 FIIAAGLGCLETAANP-FVTVLGPESSGHFRLNLAQTFNS----FGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSA 199 (438)
T ss_pred HHHHHHHHHHHhhHHH-HHHHhCChhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHH
Confidence 9999999999888877 65554 333333444444444 34444444443322100 0 0 012
Q ss_pred C------CcchhhhhHH-HHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHH
Q 019522 195 L------GPVAPFDAAA-CFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFV 267 (340)
Q Consensus 195 ~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (340)
| +|+.+|+... +..++..+....+.||.++++++ ++..++..+..++++|+|+++...+...+.....+. .
T Consensus 200 w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~ 277 (438)
T PRK10133 200 YKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTA-C 277 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-cccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHH-H
Confidence 3 3555665333 33323333322344442221111 111111223345678888877655544444444443 3
Q ss_pred Hhhccccc-cCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHH
Q 019522 268 FLWTPALS-PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSS 324 (340)
Q Consensus 268 ~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 324 (340)
..|.+.|. ++..|.++ +.....+.++.+++++..+++.||+++|+ .+.....++.
T Consensus 278 ~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~--~l~~~~~~~~ 336 (438)
T PRK10133 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAM 336 (438)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHH
Confidence 56777774 55667766 45667788899999999999999999884 4444443333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=194.02 Aligned_cols=267 Identities=18% Similarity=0.131 Sum_probs=162.9
Q ss_pred hhHHHHHHHHHHHHHhhhh----HHHHH-HHHhh--CCChhhhHHHH-----HHHHhhhhhhhhhhhhccccccchHHHH
Q 019522 39 KNNYLLVYSLMMAGDWLQG----PYVYY-LYSTY--GFGKGEIGQLF-----IAGFGSSMLFGTIVGSLADKQGRKRACV 106 (340)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~--g~s~~~~g~~~-----~~~~~~~~~~~~~~G~l~Dr~Grr~~l~ 106 (340)
+++.....++....+++|. ...|. +.+++ +.++. .+.+. ...++...+++++.|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 3456667777788888882 23443 34455 66665 35442 3455556677888999999999999999
Q ss_pred HHHHHHHHHh-hhhccchHH--------HHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhh
Q 019522 107 TYCLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLG 174 (340)
Q Consensus 107 ~~~~~~~~~~-~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g 174 (340)
.+.+++++++ ++++++++. .+++.|+++|++.|..++.... ++.|. ++|++..+...... .+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~p~~~rg~~~~~~~~g~----~~G 173 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL-LAVESAPKNKKAFYSSGVQVGY----GVG 173 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH-HHHHhCCCCCCcHHHHHHHHHH----HHH
Confidence 9999999988 889999987 5888999999999999888755 88886 55555333333322 233
Q ss_pred hhHHHHHHHhhhhhhh--cccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHH--HHHHHHHHHHHhhchhHH
Q 019522 175 NGLVAILSGLFGNLLV--DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDL--LTQFRGAAVAIASDEKIA 250 (340)
Q Consensus 175 ~~ig~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 250 (340)
..++..+...+...+. +...|+||.+|.+.++..++..... ...||+++..+++++. .++..+..+.++|+|+.+
T Consensus 174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~-~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (438)
T PRK09952 174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVR-NGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAF 252 (438)
T ss_pred HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHH-HhCCCChhHHHHHhhcccccccCCHHHHHHHchHHH
Confidence 3233222222221111 0123677788887776654433322 3334432111110000 000001123456777776
Q ss_pred HHHHHHHHhhhhHHHHHHhhccccccCCCCchhhH---HHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 251 LLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGF---IFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.......+.....++....|.|.|.++..+.+... ..........++.++.|+++||++||+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~ 317 (438)
T PRK09952 253 LKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR 317 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 65544344333334445788898887777766642 333445667788889999999999985
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=191.25 Aligned_cols=268 Identities=15% Similarity=0.087 Sum_probs=172.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHH
Q 019522 35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (340)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~ 110 (340)
+++++|+.+..+.+....++++ .+..|.+.+++|.++.+.+++.+...++..+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4456677777777777777666 466899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 111 ~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
+.+++. +++++++++.+++.|++.|++.+...+...+ ++.|. ++|++..++...... +|..+++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~l~ 156 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAA-YVIESWPKHLRNKASGLLISGYA--------VGAVVAAQVY 156 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHH-HHHHhCChhhhhHHHHHHHHHHH--------HHHHHHHHHH
Confidence 998887 7788999999999999999999998887766 76665 556664444433333 3444444444
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccch---HHHHHHHH---H---HHH------------Hhh
Q 019522 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK---DLLTQFRG---A---AVA------------IAS 245 (340)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~---~~~------------~~~ 245 (340)
..+.+..+.+|+..+.+.+...++..... ...||+++.+++++ +..+..++ . .+. ..+
T Consensus 157 ~~l~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (405)
T TIGR00891 157 SLVVPVWGDGWRALFFISILPIIFALWLR-KNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGK 235 (405)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHH-HhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhh
Confidence 44444344345666766555444443333 34454322111110 00000000 0 000 001
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
++......................+.|.|.++..+.+. +.......++.++++++.+++.||+++|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~ 305 (405)
T TIGR00891 236 RWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK 305 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 11111111111111222222345677888776666554 35556678889999999999999999985
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-25 Score=199.11 Aligned_cols=269 Identities=18% Similarity=0.071 Sum_probs=177.5
Q ss_pred cccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHH
Q 019522 34 AFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC 109 (340)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~ 109 (340)
...|..+..+..+++.......+ ++..|.+.+|+|+++.+.|++.+...++..+.+++.|+++||+|||+++..+.
T Consensus 22 ~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~ 101 (467)
T PRK09556 22 MWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLL 101 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHH
Confidence 34444555555666666555555 45589999999999999999999999989999999999999999999998888
Q ss_pred HHHHHHh-hhh-----ccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHH
Q 019522 110 LTYILSC-ITK-----HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAI 180 (340)
Q Consensus 110 ~~~~~~~-~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~ 180 (340)
++.++.. ..+ .+++++.+++.|+++|++.+...+...+ ++.|+ ++|++..++.....+ +|..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~i~~~~~~~~rg~a~gi~~~~~~--------lG~~ 172 (467)
T PRK09556 102 ILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYS-TITRWTPRRKRGRFLGFWNISHN--------LGGA 172 (467)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHH-HHHHHcCccceeeeEEeeecccc--------hhhh
Confidence 8776654 333 4689999999999999999998888766 77776 567886555444333 3333
Q ss_pred HHHhhhhhhhccc-CCCcchhhhhHHHHHHHHHHHHh---cccccccCCCc------cc---hHH---HHH--HHHH-HH
Q 019522 181 LSGLFGNLLVDSF-SLGPVAPFDAAACFLAIGMVIIL---SSWTENYGDPS------ES---KDL---LTQ--FRGA-AV 241 (340)
Q Consensus 181 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~---~~~---~~~--~~~~-~~ 241 (340)
+++.+..++.+.. +..|+..|...+++.++..+... +..||+.+..+ +. ++. .++ ..+. .+
T Consensus 173 l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (467)
T PRK09556 173 GAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVE 252 (467)
T ss_pred HHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHH
Confidence 3333333333221 11244556554444433322222 22232211000 00 000 000 0111 22
Q ss_pred HHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
..+|+|.++...+...+.....+. ...|.|.|+++.+|.+.. .......++.+++.++.|+++||+++|+
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~ 325 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYIVRIG-IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR 325 (467)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 367889888877766665555555 588999999887777653 4455667889999999999999999885
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=193.14 Aligned_cols=269 Identities=17% Similarity=0.235 Sum_probs=172.5
Q ss_pred hhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHH-HH-----HHhhhhhhhhhhhhccccccchHHHHH
Q 019522 38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLF-IA-----GFGSSMLFGTIVGSLADKQGRKRACVT 107 (340)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~-~~-----~~~~~~~~~~~~G~l~Dr~Grr~~l~~ 107 (340)
.|++......+..+.+.+| .+..|.+.+|++.++.+.+.+. +. .++...+++++.|+++||+|||+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 3445666777778888888 4559999999999888765432 22 223234567889999999999999999
Q ss_pred HHHHHHHHh-hhhccchHH--------HHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhh
Q 019522 108 YCLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGN 175 (340)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~ 175 (340)
+..+.+++. +++++++++ .+++.|+++|++.+...+.... ++.|. ++|++..++.....+.+..+|.
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSV-YLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHH-HHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 999999988 888888876 4688999999999988887755 77775 6778866666666665555555
Q ss_pred hHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHH
Q 019522 176 GLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAI 255 (340)
Q Consensus 176 ~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (340)
.+|..+.+.+.+...+. ++||.+|++......+. .......||+++..++ +..++.++..+...++++.+.....
T Consensus 171 ~~g~~l~~~~~~~~~~~--~gWr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAE--WGWRIPFLIGCLIVPFI-FLIRRSLEETEEFLAR--KHRPSMREIFRSLAANWRIVLAGML 245 (434)
T ss_pred HHHHHHHHhCCHHHHhc--cchHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHh--hhccccccHHHHHHHhHHHHHHHHH
Confidence 55555544444333333 45667777654333222 2221222222110000 0000111122334455555544444
Q ss_pred HHHhhhhHHHHHHhhccccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 256 QSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
..+.....+.....|.|.|+++..|.+.. .......++++++.++.|+++||++||+
T Consensus 246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~ 305 (434)
T PRK15075 246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP 305 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 33334444555688899999876666543 4445567788899999999999999985
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=195.13 Aligned_cols=267 Identities=21% Similarity=0.227 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhh----hHH--HHHHHHhhhhhhhhhhhhccccccchHHHHHHH
Q 019522 40 NNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGE----IGQ--LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC 109 (340)
Q Consensus 40 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~----~g~--~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~ 109 (340)
++.+....+..+.+++| ....|.+.++++.+.++ ++. .++..+++..+++++.|+++||+|||+++..+.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34556667777888888 23478888888643322 222 246677778889999999999999999999999
Q ss_pred HHHHHHh-hhhccchHHH--------HHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhH
Q 019522 110 LTYILSC-ITKHSPQYKI--------LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGL 177 (340)
Q Consensus 110 ~~~~~~~-~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~i 177 (340)
++++++. ++++++|+.. +++.|+++|++.|..++.... ++.|+ ++|++..++...... .|..+
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~-~~~e~~p~~~Rg~~~~~~~~~~~----~G~~l 169 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASI-FVAEYSPDRKRGFMGSWLDFGSI----AGFVL 169 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHH-HHHHhCCCCCCcHHHHHHHHHHH----HHHHH
Confidence 9999988 8899999864 889999999999999998866 88886 667775554444333 33334
Q ss_pred HHHHHHhhhhhhhc--ccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHH----H----HHHHHHHHHHhh-c
Q 019522 178 VAILSGLFGNLLVD--SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDL----L----TQFRGAAVAIAS-D 246 (340)
Q Consensus 178 g~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~-~ 246 (340)
|..+...+...+.+ ...|+||++|++.++..++..++. ...||++...+++++. . ++.+.+.+++++ +
T Consensus 170 g~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (490)
T PRK10642 170 GAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLR-HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKH 248 (490)
T ss_pred HHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHH-HcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHh
Confidence 44333333322211 124677788888766555444333 3445532110000000 0 000112233333 3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
++.+.......+.....++....|.|.|+++..+.+.. .......++..++.++.|+++||+|||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 317 (490)
T PRK10642 249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP 317 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34333333333333344544678999998766665542 3345556778889999999999999995
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=187.39 Aligned_cols=235 Identities=17% Similarity=0.231 Sum_probs=161.3
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.+.+|.+.+++|+++++.|+..+...+...+++++.|+++||+|||+++..+.++.+++. ++.+++|++.+++.|+++|
T Consensus 40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 119 (394)
T PRK10213 40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLG 119 (394)
T ss_pred HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 467899999999999999999999999899999999999999999999999999999988 7788899999999999999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+...+ ++.|. ++|++..+......+ +|..+++.++..+.++.+ |+..|++.+.+.++..
T Consensus 120 ~~~g~~~~~~~~-~i~~~~~~~~~~~a~~~~~~~~~--------~g~~ig~~l~~~l~~~~g--w~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 120 LALGGFWAMSAS-LTMRLVPPRTVPKALSVIFGAVS--------IALVIAAPLGSFLGELIG--WRNVFNAAAVMGVLCI 188 (394)
T ss_pred HhhHHHHHHHHH-HHHHHcCHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHH
Confidence 999998887766 76665 455554444333333 444444555555544445 4566766665555444
Q ss_pred HHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhc-cccccCCCCchh---hHHHH
Q 019522 213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT-PALSPNDEEIPH---GFIFA 288 (340)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~ 288 (340)
.......||++++++++ . ++..+.+|+|+++.......+.....+.. ..+. |.|.+ +.|.++ +....
T Consensus 189 l~~~~~~p~~~~~~~~~---~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~-~~g~s~~~~g~~~~ 259 (394)
T PRK10213 189 FWIIKSLPSLPGEPSHQ---K----QNTFRLLQRPGVMAGMIAIFMSFAGQFAF-FTYIRPVYMN-LAGFGVDGLTLVLL 259 (394)
T ss_pred HHHHHHCCCCCcccccc---h----hHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hcCCChhHHHHHHH
Confidence 44333345432211111 1 12235678888877544444434333333 4454 55553 345444 45566
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC
Q 019522 289 TFMLASMLGSSLASRLMARSPPR 311 (340)
Q Consensus 289 ~~~~~~~~~~~~~g~l~dr~g~~ 311 (340)
...++.+++.++.+++.||.+++
T Consensus 260 ~~~~~~iig~~~~~~l~~r~~~~ 282 (394)
T PRK10213 260 SFGIASFVGTSLSSFILKRSVKL 282 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccchh
Confidence 67788999999999999995433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=191.93 Aligned_cols=243 Identities=12% Similarity=0.007 Sum_probs=159.8
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.++.|.+.+++|+|++++|++.+...++..+.+++.|+++||+|||+++..+.++.+++. ++++++|++.+++.|++.|
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 102 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLAS 102 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577999999999999999999999999999999999999999999999999999999988 7889999999999999999
Q ss_pred HHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
++.+..++...+ .+.|+ ++|++..+..... ..+|..+++.+...+.+..+ ||..|.+.+++.++...
T Consensus 103 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~ 171 (377)
T TIGR00890 103 AGVGIAYGIALN-TAVKWFPDKRGLASGIIIGG--------YGLGSFILSPLITSVINLEG--VPAAFIYMGIIFLLVIV 171 (377)
T ss_pred HHHHHHHHhHHH-HHHHHcCcccHHHHHHHHHh--------cchhHhHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHH
Confidence 999987766655 55553 5566643333332 22444444444444444344 55667766655544443
Q ss_pred HHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHH
Q 019522 214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF 290 (340)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 290 (340)
......++++++++++++..++.+...++.+|+|+.+.......+....... ...+.+.|.++ .+.+. +......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (377)
T TIGR00890 172 LGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLL-LIGLYKPYGQS-LGLSDGFLVLAVSIS 249 (377)
T ss_pred HHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 3322222211111100000011112334567787777654444333333322 23444555443 33333 3556677
Q ss_pred HHHHHHHHHHHHHHHhhCCCCc
Q 019522 291 MLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 291 ~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.++.+++++..+++.||++||+
T Consensus 250 ~~~~~~~~~~~g~l~dr~g~~~ 271 (377)
T TIGR00890 250 SIFNGGGRPFLGALSDKIGRQK 271 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 8889999999999999999884
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=192.17 Aligned_cols=272 Identities=17% Similarity=0.078 Sum_probs=180.6
Q ss_pred hHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHH
Q 019522 40 NNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS 115 (340)
Q Consensus 40 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~ 115 (340)
|..+....+..+....| ...+|.+.+|+|.+.++.+++.+.+.++.....++.|+++||+|||+++..+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44555555555665666 34489999999999999999999999888888899999999999999999999999998
Q ss_pred h-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhcc---ccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 019522 116 C-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAE---HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD 191 (340)
Q Consensus 116 ~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~---~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~ 191 (340)
. ++++++|++.++++|+++|++.+...+.....+..+ .++|++..+......+ +|..++|.+++.+.+
T Consensus 85 ~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~--------~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 85 SLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGS--------GGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhc
Confidence 8 889999999999999999999998877665523232 2556664444333333 555566666666666
Q ss_pred ccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHH-------------H----------------------
Q 019522 192 SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQ-------------F---------------------- 236 (340)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~---------------------- 236 (340)
+.+|| +.|++...+.++...+.....|+++++++++.+.... .
T Consensus 157 ~~gwr--~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (495)
T PRK14995 157 HFYWG--SVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL 234 (495)
T ss_pred cCChH--HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 56655 5676665555554444433444432222111110000 0
Q ss_pred ------HHH--------HHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHH
Q 019522 237 ------RGA--------AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSS 299 (340)
Q Consensus 237 ------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 299 (340)
..+ ..+++|+|.+........+.....+. ...+.|.|+++..|.++ +.......++..++.+
T Consensus 235 ~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~ 313 (495)
T PRK14995 235 LLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVG-FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGP 313 (495)
T ss_pred HHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 01356666665544444443333333 36678888887766665 4566667788899999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHH
Q 019522 300 LASRLMARSPPRVESYMQIVFVVSS 324 (340)
Q Consensus 300 ~~g~l~dr~g~~~~~~~~~~~~~~~ 324 (340)
+.|++.||+|+|+ .+..+..+..
T Consensus 314 ~~g~l~~r~g~~~--~~~~g~~~~~ 336 (495)
T PRK14995 314 IAGILVSRLGLRL--VATGGMALSA 336 (495)
T ss_pred HHHHHHHHcCchH--HHHHHHHHHH
Confidence 9999999999874 4444444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=187.89 Aligned_cols=245 Identities=14% Similarity=0.094 Sum_probs=171.8
Q ss_pred hhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHH
Q 019522 54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI 132 (340)
Q Consensus 54 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~ 132 (340)
....|..|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+..+.+++. +..++++++.+.+.|+
T Consensus 22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRF 101 (385)
T ss_pred HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 333677999999999999999999999999899999999999999999999999999998888 7788899999999999
Q ss_pred HHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHH
Q 019522 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 209 (340)
+.|++.+...+...+ ++.|. ++|++..+....... +|..+++.+++.+.++.+ |+..+...+....
T Consensus 102 l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~ 170 (385)
T TIGR00710 102 VQAFGASAGSVISQA-LVRDIYPGEELSRIYSILMPVLA--------LAPAVAPLLGGYILVWLS--WHAIFAFLSLAGI 170 (385)
T ss_pred HHHcchhHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHH
Confidence 999999988887766 77775 445554444333333 333444444444444444 4466666555554
Q ss_pred HHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHH
Q 019522 210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFI 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 286 (340)
+.........||++++++++ ..++..+..++.+|+|+++.......+.....+. ...+.|.+.++..+.++ +..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~ 247 (385)
T TIGR00710 171 LLSALIFFILPETLPYEARI--QISTYFETFLLLLKSKMFWGYALIYGASFGGFFA-FFSGAPFVYIDIMGVSPSVFGLL 247 (385)
T ss_pred HHHHHHHHhCCCCCCCcccC--CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHcChHHHHHHcCCCHHHHHHH
Confidence 44444433445443332221 1122233455678888888766555554444444 46677877766666555 355
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 287 FATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 287 ~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.....++.++++++.+++.||+++|+
T Consensus 248 ~~~~~~~~~~~~~~~g~l~~~~~~~~ 273 (385)
T TIGR00710 248 FALNIIAMIFGGFLNGRFIKKWGAKS 273 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 56677888999999999999999885
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=184.89 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc
Q 019522 43 LLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS 121 (340)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~ 121 (340)
+...++....++...+.+|.+.++++.++.++|++.+...++..+.+++.|+++||+|||+++..+..+.+++. +..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 84 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV 84 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666777888999999999999999999999999999999999999999999999998887766 55565
Q ss_pred c-----hHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 019522 122 P-----QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF 193 (340)
Q Consensus 122 ~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~ 193 (340)
+ +++.+++.|++.|++.+...+...+ ++.|. ++|++..++.....+ +|..+++.++..+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~g~~l~~~l~~~~ 155 (365)
T TIGR00900 85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQA-MLPDLVPEEQLTQANSLSQAVRS--------LFYIVGPGIGGLMYATL 155 (365)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHhHHHHHHH--------HHHHHHHHHHHHHHHHh
Confidence 5 8999999999999999998888766 77775 455564444444333 33344444444444444
Q ss_pred CCCcchhhhhHHHHHHHHHHHHh-cccccccCCCccc-h-HHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhh
Q 019522 194 SLGPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSES-K-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLW 270 (340)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (340)
+|+ ..++..++..++...... .+.||++++++++ + +..++.++..+..+|+|+++.......+...........+
T Consensus 156 g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (365)
T TIGR00900 156 GIK--WAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVAL 233 (365)
T ss_pred hHH--HHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 556665554444333332 2223322211111 1 2223334455677888888776555555444444433367
Q ss_pred ccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 271 TPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 271 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.|.|.++..+.+. +.......++.+++.++.+++.||.++|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (365)
T TIGR00900 234 FPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA 278 (365)
T ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Confidence 7888776455444 45566678888999999999999998884
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-24 Score=188.12 Aligned_cols=236 Identities=16% Similarity=0.178 Sum_probs=161.7
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.|..|.+.+|+|+|.++.|++.+...++..+.+++.|+++||+|||+++..+..+.+++. .+++++|++.+++.|+++|
T Consensus 29 ~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~G 108 (393)
T PRK09705 29 GPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGG 108 (393)
T ss_pred chhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999 8899999999999999999
Q ss_pred HHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc-CCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+.... ++.|+ ++|++.. +.+..+...|..+|+.+++.+.+ +. +|+ ..+...+...++..
T Consensus 109 ig~~~~~~~~~~-~~~~~~~~~~~~~~----g~~~~~~~~g~~~g~~~~~~l~~----~~~~w~--~~~~~~~~~~~~~~ 177 (393)
T PRK09705 109 VGIGIIQAVMPS-VIKRRFQQRTPLVM----GLWSAALMGGGGLGAAITPWLVQ----HSETWY--QTLAWWALPAVVAL 177 (393)
T ss_pred hHHHHHhhhhhH-HHHHHccccchhHH----HHHHHHHHHHHHHHHHHHHHHHH----hcCCHH--HHHHHHHHHHHHHH
Confidence 999998777655 66665 4555533 33343444455555555554433 22 455 43333222222222
Q ss_pred HHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHH
Q 019522 213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT 289 (340)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 289 (340)
.......++ +++++++++ ....+.+++|+.+.......+... .+.....|.|.|.++ .+.+. +.....
T Consensus 178 ~~~~~~~~~-~~~~~~~~~------~~~~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~ 248 (393)
T PRK09705 178 FAWWWQSAR-EVASSHKTT------TTPVRVVFTPRAWTLGVYFGLING-GYASLIAWLPAFYIE-IGASAQYSGSLLAL 248 (393)
T ss_pred HHHHHHhcC-CCccccCCC------cCCcccccCHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-cCCChhhhhHHHHH
Confidence 222111111 111111110 011234567777665554444433 344457888988866 45544 456677
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCc
Q 019522 290 FMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 290 ~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
..++++++++..+++.||.++|+
T Consensus 249 ~~i~~i~g~~~~g~l~~r~~~~~ 271 (393)
T PRK09705 249 MTLGQAAGALLMPAMARHQDRRK 271 (393)
T ss_pred HHHHHHHHHHHHHHHHhhccchH
Confidence 78899999999999999999884
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=184.18 Aligned_cols=240 Identities=15% Similarity=0.113 Sum_probs=155.5
Q ss_pred hhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHhhh-hccchHHHHHHHHHHH
Q 019522 56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT-KHSPQYKILMIGRILG 134 (340)
Q Consensus 56 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~-~~~~~~~~l~~~r~l~ 134 (340)
..|.+|.+.+|+|+|++|.|++.+...++..+++++.|+++||+|||+++..+......+... ...+|+..+++.|+++
T Consensus 10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 89 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLA 89 (368)
T ss_pred HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 367899999999999999999999999989999999999999999998876655544444333 3337899999999999
Q ss_pred HHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHH
Q 019522 135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (340)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 211 (340)
|++.+.. +.... .++|+ ++|++..+....... +|..+++.++..+.++.+ ||..|.+.+++.++.
T Consensus 90 G~g~~~~-~~~~~-~~~~~~~~~~r~~a~~~~~~~~~--------lG~~l~~~~~~~l~~~~g--Wr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 90 ALGQPFL-LNAFA-PAASQIREERRDLVISLLSFAMY--------LGIIFALAAGLKIYTAGG--LQLLIIPIAAVAAAG 157 (368)
T ss_pred HhHhHHH-HHHHH-HHHHHcCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHH
Confidence 9999864 33334 44554 566664444333333 444555555555554444 556677766555554
Q ss_pred HHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhhHHHHHHH
Q 019522 212 MVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFM 291 (340)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (340)
.++.....||+++++++..+. ++..++.++++|||.++.......+.....+. ..+|.|.|+++. +.+.. ......
T Consensus 158 ~~~~~~~lp~~p~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~wlp~~L~~~-g~s~~-~~~~~~ 233 (368)
T TIGR00903 158 IILVLAALPALPFQAAEGFGF-KDAVKEFGALAGRKDLWIIGAILGFGVALFDN-LAIWLEAALRPA-GLEDI-AGDAVA 233 (368)
T ss_pred HHHHHHHcCCCCCCCCCCcch-HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC-CCChH-HHHHHH
Confidence 444444555543222211111 11123456788999999887777776666666 489999999653 44432 222223
Q ss_pred HHHHHHHHHHHHHHhhCCCC
Q 019522 292 LASMLGSSLASRLMARSPPR 311 (340)
Q Consensus 292 ~~~~~~~~~~g~l~dr~g~~ 311 (340)
+....+.+..++++||..||
T Consensus 234 l~~~~g~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 234 LAILAGLIGVAVIPDRVARA 253 (368)
T ss_pred HHHHHHHHHHHHhhHHhhhh
Confidence 33334444557888887654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=187.56 Aligned_cols=265 Identities=19% Similarity=0.197 Sum_probs=172.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHH
Q 019522 35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (340)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~ 110 (340)
.++++|..+..++...+.++++ .+..|.+.+++|.++++.|++.+...++..+++++.|+++||+|||+++..+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 3456777777777777777776 455899999999999999999999999899999999999999999999999998
Q ss_pred HHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 111 ~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
+..++. ++.++++++.+++.|++.|++.+...+...+ ++.|. ++|++..+..... .. +|..+++.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~----~~----~g~~~~~~~~ 159 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIA-LTSEAVGPRLRGTAVSLMYCG----VP----FGGALASVIG 159 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHH----HH----HHHHHHHHHH
Confidence 888877 7788899999999999999999988887766 77775 4566644443332 22 4445555544
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCcc--chHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHH
Q 019522 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSE--SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY 264 (340)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (340)
..+.+..+ |+..+++.+++.++.........||+++++++ +++..++..+...+..++++.........+ ....+
T Consensus 160 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 236 (406)
T PRK11551 160 VLAAGDAA--WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFF-TLIVL 236 (406)
T ss_pred HHHccccC--HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHH-HHHHH
Confidence 44444444 55667665554444333332333443221111 011111111111111112222222222222 22233
Q ss_pred HHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 265 TFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.....|.|.+.++. |.+. +.......++.++++++.|++.||+++|+
T Consensus 237 ~~~~~~~p~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 286 (406)
T PRK11551 237 YFLLNWLPSLLVGQ-GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR 286 (406)
T ss_pred HHHHHHHHHHHHhC-CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33467788887653 4443 46667778889999999999999999885
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=185.89 Aligned_cols=262 Identities=16% Similarity=0.193 Sum_probs=172.1
Q ss_pred hhhHHHHHHHHHHHHHhh----hhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHH
Q 019522 38 FKNNYLLVYSLMMAGDWL----QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI 113 (340)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~ 113 (340)
..+.......+..+...+ ..|.+|.+.+++|.|+.+.++..+...++..+..++.|+++||+||||++..+....+
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 89 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 334444444444443332 2577888999999999999999999999888999999999999999999999999988
Q ss_pred HHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 019522 114 LSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL 189 (340)
Q Consensus 114 ~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l 189 (340)
++. ...++++++.+++.|+++|++.+...+...+ .+.|. ++|.+..+.... . ..++..+++.++..+
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~----~----~~~~~~~g~~i~~~l 160 (406)
T PRK15402 90 LTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYA-AIQESFEEADAIKITALMAN----V----ALLAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHH-HHHHHhChhHHHHHHHHHHH----H----HHHHHHHHHHHHHHH
Confidence 887 7788899999999999999998887776655 66654 222232222111 1 223445555555555
Q ss_pred hcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHh
Q 019522 190 VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269 (340)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (340)
.++.+|+ ..+++.++..++.........||++++++++. ..++..++.+..++||+++.......+....... ...
T Consensus 161 ~~~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 236 (406)
T PRK15402 161 IHVLPWR--GMFVLFAALAALSFFGLWRAMPETAGRVGEKL-SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLA-WIA 236 (406)
T ss_pred HHccCcc--HHHHHHHHHHHHHHHHHHHhCCCCCccccccc-cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-HHH
Confidence 5555555 55666555555444443334455433222211 1233344556788999888766655444433333 355
Q ss_pred hccccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 270 WTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 270 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+.|.+.++..+.++. .......++.+++.++.+++.||+++|+
T Consensus 237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~ 282 (406)
T PRK15402 237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS 282 (406)
T ss_pred HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 567777665566553 3334455678889999999999998874
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=190.36 Aligned_cols=260 Identities=10% Similarity=0.034 Sum_probs=171.2
Q ss_pred hhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHH
Q 019522 38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI 113 (340)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~ 113 (340)
.++......++..+..+++ .+.+|.+.+++|+|+.+.|++.+...++..+++++.|+++||+|||+++..+.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 3444444444444444443 456899999999999999999999999999999999999999999999999999999
Q ss_pred HHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 019522 114 LSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL 189 (340)
Q Consensus 114 ~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l 189 (340)
++. +.+++++++.+++.|++.|++.+...+.... ++.|+ ++|++..+......+ +|..+++.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~-~~~~~~~~~~rg~~~~~~~~~~~--------~g~~~~~~~~~~l 170 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAK-LLTAWYSRTERGGWWAIWNTAHN--------VGGALIPLVVGAI 170 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHH-HHHHhCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 988 7788999999999999999999988777766 66665 456664444433333 4444444444454
Q ss_pred hcccCCCcchhhhhHHHHHHHHHHHHhcccccccCC---C------ccch---HHHH----HHHHHH-HHHhhchhHHHH
Q 019522 190 VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD---P------SESK---DLLT----QFRGAA-VAIASDEKIALL 252 (340)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~---~~~~----~~~~~~-~~~~~~~~~~~~ 252 (340)
.+..+ |+..|.+.+++.++..+......+|++++ + ++++ +..+ +.++.. ...+++|+++..
T Consensus 171 ~~~~g--w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (434)
T PRK11663 171 ALHYG--WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLL 248 (434)
T ss_pred HHccc--HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHH
Confidence 44444 55667665554433322221222221110 0 0000 0000 011111 125667887776
Q ss_pred HHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCC
Q 019522 253 GAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP 309 (340)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g 309 (340)
.....+.... +.....|.|.|+++..|.+. +.......+++.+++++.|++.||+.
T Consensus 249 ~~~~~~~~~~-~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~ 307 (434)
T PRK11663 249 SFSYVLVYVV-RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF 307 (434)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 5544443333 33457899999876666655 35556678889999999999999983
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=185.21 Aligned_cols=252 Identities=15% Similarity=0.108 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc
Q 019522 42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH 120 (340)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~ 120 (340)
+....+.....+....|.+|.+.+|+|.++++.|++.+...++..+++++.|+++||+|||+++..+..+.+++. ++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~ 87 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL 87 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555788999999999999999999999999999999999999999999999999999999988 8889
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCc
Q 019522 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP 197 (340)
Q Consensus 121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~ 197 (340)
++|++.+++.|++.|++.+...+.... ++.|. ++|++..+. .. .+..++..+++.++..+.+..+ |
T Consensus 88 ~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~----~~~~~g~~~g~~l~~~l~~~~g--w 156 (382)
T PRK10091 88 SSSYLMLAIGRLVSGFPHGAFFGVGAI-VLSKIIKPGKVTAAVAG----MV----SGMTVANLLGIPLGTYLSQEFS--W 156 (382)
T ss_pred hCcHHHHHHHHHHHHhhhHHHHHHHHH-HHHHhCChHHhhHHHHH----HH----HHHHHHHHHhccHHHHHhhhcc--H
Confidence 999999999999999999887766544 66655 334442222 22 2333555555555555554444 5
Q ss_pred chhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccC
Q 019522 198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN 277 (340)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (340)
|+.|.+.++..++..+......||.++++++ +.. +.. +.+|+++.+.......+.....+. ...+.+.+.++
T Consensus 157 r~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 228 (382)
T PRK10091 157 RYTFLLIAVFNIAVLASIYFWVPDIRDEAKG--GLR----EQF-HFLRSPAPWLIFAATMFGNAGVFA-WFSYIKPYMMF 228 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCccccc--CHH----HHH-HHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5667776665554444333344553322111 111 111 345666666543333333323332 24455666655
Q ss_pred CCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 278 DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 278 ~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
..|.++ +.......++.++++++.+++.||+++|+
T Consensus 229 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~ 266 (382)
T PRK10091 229 ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR 266 (382)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh
Confidence 555544 35567778889999999999999999884
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=189.55 Aligned_cols=247 Identities=15% Similarity=0.103 Sum_probs=163.1
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.|+.|.+.+++|++.++.+++.+...++..++.++.|+++||+|||+++..+.++.+++. +.+++++++.+++.|++.|
T Consensus 56 ~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G 135 (476)
T PLN00028 56 APLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIG 135 (476)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 577899999999999999998888888788888999999999999999999998888887 7788999999999999999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc---cCCCcchhhhhHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---FSLGPVAPFDAAACFLA 209 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~ 209 (340)
++.+... .... +++|. ++|+...+......+ +|..+++.+.+.+...+.+. ...+||..|.+.+++.+
T Consensus 136 ~~~~~~~-~~~~-~i~~~~~~~~rg~a~g~~~~~~~----~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l 209 (476)
T PLN00028 136 FSLATFV-SCQY-WMSTMFNGKIVGTANGIAAGWGN----LGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHI 209 (476)
T ss_pred HHHHhhH-HHHH-HHHHhcChhheeHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence 9887653 3333 56665 567775554443333 34445555554443332221 01245577777666555
Q ss_pred HHHHHHhcccccccCCCc--cch----HHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh
Q 019522 210 IGMVIILSSWTENYGDPS--ESK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH 283 (340)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (340)
+..+... ..++++++.+ +.+ ...++..+..++.+++++++.+.+...+.....+. ...+.|.|+.+..|.+.
T Consensus 210 ~~~l~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~ 287 (476)
T PLN00028 210 IMGILVL-TLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELT-MDNIIAEYFYDRFGLSL 287 (476)
T ss_pred HHHHHHH-HHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHhHHHHHHHHhcCCCH
Confidence 4443332 2222211110 000 00011122344567788887765554443333333 46788888876666655
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 019522 284 ---GFIFATFMLASMLGSSLASRLMARSPPR 311 (340)
Q Consensus 284 ---~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 311 (340)
+.......+++++++++.|+++||+++|
T Consensus 288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 288 ETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 3555667788999999999999999865
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-23 Score=185.59 Aligned_cols=263 Identities=15% Similarity=0.138 Sum_probs=171.9
Q ss_pred chhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHH
Q 019522 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (340)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (340)
+.+++.+..+.+....++++ .+..|.+.+++|+|+.+.+.+.+...++..+++++.|+++||+|||+++..+.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 45555555666666666666 35588899999999999999999999989999999999999999999999999999
Q ss_pred HHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 019522 113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (340)
Q Consensus 113 ~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 188 (340)
+++. ..+++++++.+++.|+++|++.+...+.... ++.|. ++|++..+.... +..+|..+++.+...
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~-~~~~~~~~~~r~~~~~~~~~--------~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACAST-YAVESWPKHLKSKASAFLVS--------GFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhCCHhHhhHhhhHHHH--------HHhHHHHHHHHHHHH
Confidence 9988 7888999999999999999999988887766 77765 556664433332 333555555555555
Q ss_pred hhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCC-----ccc---hHHHHHHHHHHHHHhhchhHHHHHHHHHH--
Q 019522 189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP-----SES---KDLLTQFRGAAVAIASDEKIALLGAIQSL-- 258 (340)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 258 (340)
+.+..+|+ ..+++.....++..... ...||+++.+ ++. ++..+..+...++.+|+|++.........
T Consensus 165 l~~~~~w~--~~f~i~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (426)
T PRK12307 165 FAEAYGWR--AAFFVGLLPVLLVIYIR-ARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLF 241 (426)
T ss_pred HcccCCHH--HHHHHHHHHHHHHHHHH-HHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHH
Confidence 55555554 55655443333322222 2233322100 000 00001111234566777766543222111
Q ss_pred hhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 259 FEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
...........+.|.|.++. +.++ +.......++.++++++.+++.||+++|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 242 SIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK 297 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 11122222356778777653 4444 34556677889999999999999999885
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=185.11 Aligned_cols=256 Identities=12% Similarity=0.075 Sum_probs=165.6
Q ss_pred hhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHH
Q 019522 39 KNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL 114 (340)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~ 114 (340)
+++....+++..+.++.+ ++.+|.+.+++|+|+++.+++.+...++..++.++.|++.||+|||+++..+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444455544443 4668999999999999999999999998889999999999999999999999999888
Q ss_pred Hh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 019522 115 SC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV 190 (340)
Q Consensus 115 ~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~ 190 (340)
+. +.+++++++.+++.|+++|++.+...+...+ ++.|. ++|+...+..... .. ++..+++.+...+.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~----~~----~g~~~~~~~~~~l~ 155 (394)
T PRK03699 85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTF-LITHVYEGKQRGSRLLFTDSF----FS----MAGMIFPIIAAYLL 155 (394)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhH-HhhhhcccchHHHHHHHHHHH----HH----HHHHHHHHHHHHHH
Confidence 87 7788999999999999999999988776655 66665 3344432222222 22 33444444444433
Q ss_pred cccCCCcchhhhhHHHHHHHHHHHHh-cccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHh
Q 019522 191 DSFSLGPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269 (340)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (340)
+. .++||..|...+.+.++..++.. .+.|+.++++++++ .+. .+ ...+++++.......+.....+ ....
T Consensus 156 ~~-~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~----~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ 226 (394)
T PRK03699 156 AR-SIEWYWVYACIGLVYVAIFILTLFSEFPALGKHAPKAD--KPV----AK-EKWGIGVLFLAIAALLYILAQL-TFIS 226 (394)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHHhcCCccccccCcccc--Ccc----cc-ccCChHHHHHHHHHHHHHHHHH-HHHH
Confidence 21 13455667665555444433332 22232111111110 000 00 1123445544444333333333 3578
Q ss_pred hccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 270 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
|.|.|.++..+.+. +.......++..+++++.+++.||+++|+
T Consensus 227 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 272 (394)
T PRK03699 227 WVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR 272 (394)
T ss_pred HHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 99999977767655 35556677889999999999999999985
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=184.50 Aligned_cols=248 Identities=15% Similarity=0.142 Sum_probs=171.3
Q ss_pred HhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHH
Q 019522 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR 131 (340)
Q Consensus 53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r 131 (340)
..+..|.+|.+.+++|+|+++.+.+.+...++..++.++.|+++||+|||+.+..+.++.+++. .+.++++++.+.+.|
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 86 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMR 86 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3445688999999999999999999999999899999999999999999999999999999888 778889999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHH
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (340)
++.|++.+...+...+ ++.|. ++|++..+..... .. +|..+++.++..+.+..+ |+..+.+.+.+.
T Consensus 87 ~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~----~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~ 155 (377)
T PRK11102 87 FLHGLAAAAASVVINA-LMRDMFPKEEFSRMMSFVTLV----MT----IAPLLAPIIGGWLLVWFS--WHAIFWVLALAA 155 (377)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHcC--hHHHHHHHHHHH
Confidence 9999999988777766 66665 4556644433322 22 444444444444444444 456676666555
Q ss_pred HHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hH
Q 019522 209 AIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF 285 (340)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 285 (340)
.+.........+|+++++++++...++..++.++.+++|+.+.......+.....+. ...+.|.+..+..+.++ +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~ 234 (377)
T PRK11102 156 ILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFS-FLTAGPFVYIELNGVSPQNFGY 234 (377)
T ss_pred HHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHcCHHHHHHHhCCCHHHHHH
Confidence 554444433444433222221111222233455677888877665554444444433 35566766665555544 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 286 IFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 286 ~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
......++.+++.+..+++.||+|+|+
T Consensus 235 ~~~~~~~~~~~~~~~~g~l~~r~g~~~ 261 (377)
T PRK11102 235 YFALNIVFLFVMTIINSRFVRRVGALN 261 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 666778889999999999999999885
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=181.77 Aligned_cols=258 Identities=16% Similarity=0.176 Sum_probs=166.0
Q ss_pred HHHHHHHHhhh-hHHHHH-HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccc
Q 019522 46 YSLMMAGDWLQ-GPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP 122 (340)
Q Consensus 46 ~~~~~~~~~~~-~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~ 122 (340)
..+.....++. .|..|. +.+++|+|+.+.+++.+...++..+.+++.|+++||+|||+.+..+.++..++. ++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~ 88 (366)
T TIGR00886 9 GFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV 88 (366)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444433 677885 889999999999999999999999999999999999999999999999999988 778888
Q ss_pred -hHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc------c
Q 019522 123 -QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD------S 192 (340)
Q Consensus 123 -~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~------~ 192 (340)
+++.+++.|+++|++.+.. +...+ ++.|. ++|++..+......+ +|..+++.+++.+.....+ +
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~-~~~~~-~~~~~~~~~~r~~~~~~~~~~~~----~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 89 QSYSVLLLLRLFIGIAGGSF-ASCMP-WISFFFPKKIQGTALGLAAGWGN----MGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hhHHHHHHHHHHHHHhchhh-HhHHH-HHHHhcCHhhhhHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999986544 44545 66665 556665554444444 4444555555554443222 2
Q ss_pred cCCCcchhh-hhHHHHHHHHHHHHhcccccccCCC-ccchHHH--------HHHHHHHHHHhhchhHHHHHHHHHHhhhh
Q 019522 193 FSLGPVAPF-DAAACFLAIGMVIILSSWTENYGDP-SESKDLL--------TQFRGAAVAIASDEKIALLGAIQSLFEGS 262 (340)
Q Consensus 193 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (340)
.+|+| .+ ...++...+...+.....+|+++++ ++++... ++..+...+.+++|+++.......+....
T Consensus 163 ~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (366)
T TIGR00886 163 LAWGW--AFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGS 240 (366)
T ss_pred ccccc--hhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 24554 45 2222222222222212222221111 1110000 00111344567788877765554444444
Q ss_pred HHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 263 MYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.+. ...+.|.|.++..+.++ +.......+.+++++++.+++.||+++|+
T Consensus 241 ~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 292 (366)
T TIGR00886 241 FLG-VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR 292 (366)
T ss_pred HHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch
Confidence 444 47788888877766555 34556667788899999999999999985
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=180.36 Aligned_cols=244 Identities=14% Similarity=0.127 Sum_probs=163.3
Q ss_pred hhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHH
Q 019522 54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI 132 (340)
Q Consensus 54 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~ 132 (340)
....+.+|.+.+++|.|+.+.++..+...++..++.++.|+++||+|||+.+..+.+...++. ....+++++.+++.|+
T Consensus 20 ~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 99 (392)
T PRK10473 20 DMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRF 99 (392)
T ss_pred HHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 334577999999999999999999999998888889999999999999999999999998888 7778899999999999
Q ss_pred HHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHH
Q 019522 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 209 (340)
++|++.+...+...+ ++.|. ++|++..+...... . ++..+++.++..+.+..+ |+..+.+.+....
T Consensus 100 l~g~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~----~----i~~~~~~~i~~~l~~~~g--~~~~~~~~~~~~~ 168 (392)
T PRK10473 100 LQGIGAGCCYVVAFA-ILRDTLDDRRRAKVLSLLNGIT----C----IIPVLAPVLGHLIMLKFP--WQSLFYTMAAMGI 168 (392)
T ss_pred HHHhhhhHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHhCcC--hHHHHHHHHHHHH
Confidence 999998888776655 66664 45555433333222 2 344444444444444444 4466666655544
Q ss_pred HHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHH
Q 019522 210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFI 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 286 (340)
+...+.....+|++++++++++ +..+..++.+|+++++.......+....... ...+.|.+.++..|.++ +..
T Consensus 169 i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~ 244 (392)
T PRK10473 169 LVLLLSLFILKETRPARAPAAS---SKPRENSESLLNRFFLSRLVITTLSVTVILT-FVNTSPVLLMEQMGFSRGEYAII 244 (392)
T ss_pred HHHHHHHHHcCCCCCcccCCcc---chHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-HHHhCHHHHHHHcCCCHHHHHHH
Confidence 4444333334444332211111 1112234557777766544443333333333 34556766666556554 345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 287 FATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 287 ~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.....++.+++.+..+++.||+++|+
T Consensus 245 ~~~~~~~~i~~~~~~~~l~~r~g~~~ 270 (392)
T PRK10473 245 MALTAGVSMTVSFSTPFALGIFKPRT 270 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 56677888999999999999999884
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=178.92 Aligned_cols=267 Identities=13% Similarity=0.165 Sum_probs=168.9
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHH
Q 019522 33 SAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (340)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (340)
...+|.........+.....++...+++|.+.+|+|.|+++.|++.+...++..+++++.|+++||+||||++..+..+.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~ 88 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLW 88 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 34444444555555666666666677777888999999999999999999989999999999999999999999999988
Q ss_pred HHHh-hh---hc-cchHHHHHHHHHHHHHHhhhhhhhhhhhhhcc---ccccchhhHHHHHHHHHHHHhhhhHHH-HHHH
Q 019522 113 ILSC-IT---KH-SPQYKILMIGRILGGIATSLLFSAFESWLVAE---HNKRGFEQQWLSITFSKAIFLGNGLVA-ILSG 183 (340)
Q Consensus 113 ~~~~-~~---~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~---~~~r~~~~~~~~~~~~~~~~~g~~ig~-~~~~ 183 (340)
+++. ++ ++ .++++.+++.|++.|++.+...+...+ .+.+ .++|++..+......+ +|. .+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~--------~g~~~~g~ 159 (402)
T TIGR00897 89 CVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLV-WVVYNTKQDNLSSAVGWFWAVYS--------IGIGVFGS 159 (402)
T ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHH-HHHHhCCHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 8865 33 23 357888889999999998877665544 4434 2667775555544433 232 2344
Q ss_pred hhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhccccccc-CCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhh
Q 019522 184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENY-GDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGS 262 (340)
Q Consensus 184 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (340)
.++..+.+..+|+ ..++.......+.........++.+ ++++++++..++..+..+.++|+|+++.......+....
T Consensus 160 ~~~~~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (402)
T TIGR00897 160 YYSSYAIPAFGEM--NTLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIG 237 (402)
T ss_pred HHHHhcccccchH--HHHHHHHHHHHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 4444444444543 2222221111111111111112111 111111111222233455678899888766554444444
Q ss_pred HHHHHHhhccccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 263 MYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.+. ...|.|.|.++ .|.+.. .......+++.++.+..|++.||+++|+
T Consensus 238 ~~~-~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 288 (402)
T TIGR00897 238 LFG-FAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN 288 (402)
T ss_pred HHH-HHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 444 57788988755 455543 4445667889999999999999999875
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=183.55 Aligned_cols=255 Identities=25% Similarity=0.340 Sum_probs=170.3
Q ss_pred HHHHHHHHhhhhHHHH-HHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccch
Q 019522 46 YSLMMAGDWLQGPYVY-YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ 123 (340)
Q Consensus 46 ~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~ 123 (340)
.++.........+..| .+.+++|.|+.+++++.+...+...+.+++.|+++||+|||+++..+.++.+++. +..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 84 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASN 84 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhh
Confidence 3444444555577788 8889999999999999999999999999999999999999999999999999985 5556577
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchh
Q 019522 124 YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP 200 (340)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~ 200 (340)
.+.+++.|++.|++.+...+...+ ++.|. ++|++..+......+ +|..+++.++..+.+..+ |+..
T Consensus 85 ~~~~~~~~~l~g~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~--------~g~~~g~~l~~~l~~~~~--~~~~ 153 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSGFFSPASNA-LIADWFPPEERGRAFGILSAGFS--------LGSILGPLLGGFLISYFG--WRWA 153 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCTCCHHHHHHHHHHHHH--------HHHHHHHHHHHHCCCHCH--HCCH
T ss_pred HHHHhhhccccccccccccccccc-cccccchhhhhhhccccccchhh--------hhhhcccchhhhhhhccc--cccc
Confidence 779999999999999999888877 77776 456664444433333 455555555555554444 5566
Q ss_pred hhhHHHHHHHHHHHHhcccccccCCC--ccchHH----HHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcccc
Q 019522 201 FDAAACFLAIGMVIILSSWTENYGDP--SESKDL----LTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (340)
|++.+++.++..++.....+++++++ +++++. .++..+..+.++++|.++.. ....+.....+.....+.|.|
T Consensus 154 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 154 FLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWIL-LIAFFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhh-hhhhhHHHHHHHHhhcccchh
Confidence 87777777666554222222222111 111111 11111124566677766522 223333333344457888888
Q ss_pred ccCCCCch-h---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 275 SPNDEEIP-H---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 275 ~~~~~~~~-~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.++..+.+ . +.......+.+.++.++.+++.||+++++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR 274 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 77766666 3 34466777888888999999999999875
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=178.89 Aligned_cols=241 Identities=15% Similarity=0.142 Sum_probs=163.4
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.|.+|.+.+++|.+.++.++..+...++..+++++.|+++||+|||+++..+..+.+++. ++.+++|++.+++.|+++|
T Consensus 36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G 115 (413)
T PRK15403 36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQG 115 (413)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999888 7888999999999999999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+.... ++.|. +++++..+.. +.... +++.+++.++..+.++. +|+..|++.++..++..
T Consensus 116 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~g~~lg~~l~~~~--gw~~~f~~~~~~~~i~~ 184 (413)
T PRK15403 116 TSICFIATVGYV-TVQEAFGQTKGIKLMAII----TSIVL----VAPIIGPLSGAALMHFV--HWKVLFAIIAVMGLIAF 184 (413)
T ss_pred HHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Confidence 998765444433 55554 2333432222 22233 34444444444444433 45577877766655555
Q ss_pred HHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhh---HHHHH
Q 019522 213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFAT 289 (340)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 289 (340)
+......||++++++++ ...++..++.+.++|||+++.......+.....+. ...+.|.+.++..|.++. .....
T Consensus 185 ~~~~~~lp~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~gl~~~~ 262 (413)
T PRK15403 185 VGLLLAMPETVKRGAVP-FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMS-WVAVSPVILIDAGGMTTSQFAWTQVP 262 (413)
T ss_pred HHHHHhCCCCccccCCC-CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHhcCCCHHHHHHHHHH
Confidence 44434556654322221 11223334566788999999876665555544444 466789888887777664 33334
Q ss_pred HHHHHHHHHHHHHHHHhhCCC
Q 019522 290 FMLASMLGSSLASRLMARSPP 310 (340)
Q Consensus 290 ~~~~~~~~~~~~g~l~dr~g~ 310 (340)
...+..++..+.+++.+|..+
T Consensus 263 ~~~~~~i~~~l~~~~~~~~~~ 283 (413)
T PRK15403 263 VFGAVIVANAIVARFVKDPTE 283 (413)
T ss_pred HHHHHHHHHHHHHHHhccCCc
Confidence 456666777777776644433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=189.80 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=111.8
Q ss_pred ccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHH
Q 019522 35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (340)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~ 110 (340)
..+.+|.++.++.+..+.++++ ++.+|.+.+++|++..+.+++.+..+++..++++++|+++||+|||++++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4567777777777777777775 455889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHH
Q 019522 111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFS 168 (340)
Q Consensus 111 ~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~ 168 (340)
+.+++. +++++++++.+++.|++.|++.+...+.... ++.|. ++|+...++......
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~-~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS-YFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHH
Confidence 988877 7788999999999999999999999888766 88876 556665555544444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=186.51 Aligned_cols=244 Identities=16% Similarity=0.192 Sum_probs=167.5
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.+.+|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+++..+.++..++. ++++++|++.+++.|+++|
T Consensus 22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 101 (485)
T TIGR00711 22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQG 101 (485)
T ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999999999999999999988 8889999999999999999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+...+ ++.|. ++|++..+.. ... ..+|..+++.+++++.++.+|+ +.|++...+.++..
T Consensus 102 ~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~----~~~----~~~g~~~g~~~~~~l~~~~~w~--~~f~~~~~~~~~~~ 170 (485)
T TIGR00711 102 FGGGPLIPLSFS-TLLNIYPPEKRGRAMAIW----GLT----VLVAPALGPTLGGWIIENYHWR--WIFLINVPIGIIVV 170 (485)
T ss_pred hhhhhHHHHHHH-HHHHHCCHHHHHHHHHHH----HHH----HHHHhhhhhccHhHhccCcCce--ehhhhhhHHHHHHH
Confidence 999988887766 77765 4555533333 222 2355555566666666656665 45655544443333
Q ss_pred HHHhcccccccCCCccchHHH----------------------------------------------HHHHH----HHHH
Q 019522 213 VIILSSWTENYGDPSESKDLL----------------------------------------------TQFRG----AAVA 242 (340)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~----~~~~ 242 (340)
.......||++++++++.+.. ++.++ ...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (485)
T TIGR00711 171 VVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLR 250 (485)
T ss_pred HHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHH
Confidence 333223333222111110000 00000 0123
Q ss_pred HhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 243 IASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.+|+|+++.......+.....+. ...+.|.|.++..+.++ +.......++.+++.++.+++.||+++|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 322 (485)
T TIGR00711 251 LFKYRNFTIGCVYMSLLGLGLYG-SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK 322 (485)
T ss_pred HHcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH
Confidence 56677776665554444444444 46778888887767665 45556677889999999999999999884
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=178.65 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=157.7
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.|.+|.+.+++|+|+++.|++.+...++..+.+++.|+++||+|||+++..+.+...++. .. ..++++.+++.|++.|
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 98 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIG 98 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999998887777 44 7788899999999999
Q ss_pred HHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
++.+...+.... ++.|. ++|++..+. .+.+..+|..+++.+++.+. +..+++|+..|...+...++...
T Consensus 99 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~g~~i~~~~~~~l~----~~~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 99 VGIAIINVLLPS-LIKRDFPQRVGLMTGL----YSMALMGGAALAAAATVPLA----QHSGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHhccchH-HHHHhCcchhhHHHHH----HHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHH
Confidence 999887666544 55554 445553333 33333344444444444333 33333466666554443333322
Q ss_pred HHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHH
Q 019522 214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF 290 (340)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 290 (340)
.. .++.+++++++++.. +...++.+|+|+.+.......+.....+. ...|.|.|.++ .+.+. +...+..
T Consensus 170 ~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~-~g~~~~~~g~~~~~~ 241 (355)
T TIGR00896 170 AW---IPQVRRRVAANQTTT---RLTPVRIWRSPLAWQVTVFFGLQSGLYYS-LIGWLPAILIS-HGASAATAGSLLALM 241 (355)
T ss_pred HH---hhhhccccCCCCCCC---CCCCchhhcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 22 122111111111000 01233567778777655544443333333 47788988865 35544 4566777
Q ss_pred HHHHHHHHHHHHHHHhhCCCCc
Q 019522 291 MLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 291 ~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.++.+++++..|++.||+++|+
T Consensus 242 ~~~~i~~~~~~g~l~dr~~~~~ 263 (355)
T TIGR00896 242 QLAQAASALLIPALARRVKDQR 263 (355)
T ss_pred HHHHHHHHHhHHHHHhhhccch
Confidence 8889999999999999996554
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-22 Score=175.31 Aligned_cols=256 Identities=18% Similarity=0.159 Sum_probs=152.2
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhhHHHHH-HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHH
Q 019522 33 SAFNSFKNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (340)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (340)
.+.++..+......+......++..|.+|. +.+|+|.|+.++|++.+...+...+.+++.|+++||+||||++..+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~ 90 (392)
T PRK12382 11 SSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLA 90 (392)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHH
Confidence 333444444444444445555666788886 5679999999999999999999999999999999999999999998877
Q ss_pred HHHHh-h---hhc-----cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHH
Q 019522 112 YILSC-I---TKH-----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVA 179 (340)
Q Consensus 112 ~~~~~-~---~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~ 179 (340)
..++. . ... .++++.+++.|+++|++.+...+...+ ++.|. ++|++..++.+...+ .|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~a~~~~~~~~~----~g~---- 161 (392)
T PRK12382 91 CGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALT-WGLGLVGPKHSGKVMSWNGMAMY----GAL---- 161 (392)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCccccchhhhHHHHHHH----HHH----
Confidence 66543 1 111 357889999999999999988776655 54443 667775554433333 333
Q ss_pred HHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 019522 180 ILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLF 259 (340)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (340)
.+++.++..+.+..+| +..+.+.....++..... ++.||+++++++++ +.++..+..++ +.... .+
T Consensus 162 ~~g~~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~-----~l- 227 (392)
T PRK12382 162 AAGAPLGLLLHSHFGF--AALALTTMVLPLLAWAFN-GTVRKVPAHAGERP----SLWSVVGLIWK-PGLGL-----AL- 227 (392)
T ss_pred HHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHHH-HhccCCCCCcccCc----hHHHHHHHHHH-hHHHH-----HH-
Confidence 3444444444444454 454544433333333222 33333322211111 11111111111 11111 11
Q ss_pred hhhHHHHHHhhccccccCCCCch-hhHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 260 EGSMYTFVFLWTPALSPNDEEIP-HGFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
....+.....+.|.|.++. +.+ .+.......++.+++++..+++.||+++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 280 (392)
T PRK12382 228 QGVGFAVIGTFVSLYFASK-GWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK 280 (392)
T ss_pred HHHHHhHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 1122222345566665543 222 344555667778889999999999999885
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-22 Score=174.77 Aligned_cols=259 Identities=13% Similarity=0.061 Sum_probs=168.8
Q ss_pred HHHHHHHHhhh-hHHHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc-
Q 019522 46 YSLMMAGDWLQ-GPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS- 121 (340)
Q Consensus 46 ~~~~~~~~~~~-~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~- 121 (340)
.+...+..++. +|..+.+.+ ++|+|++|.+++.+...+.+.+..++.|++.||+|.|+++..+.++.++.+ ..+++
T Consensus 42 ~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~ 121 (462)
T PRK15034 42 CLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV 121 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544 576777766 899999999999999999899998999999999999999999999998877 66665
Q ss_pred ----chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhh-hhccc
Q 019522 122 ----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL-LVDSF 193 (340)
Q Consensus 122 ----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~-l~~~~ 193 (340)
++++.+++.|++.|++ +..++.... .++++ ++||+..++.....+ .|..++..+.|.+... +.+..
T Consensus 122 ~~~~~s~~~lli~r~l~Gig-g~~f~~~~~-~vs~wfp~~~rG~A~Gi~~g~G~----~G~~l~~~l~p~~i~~~l~~~~ 195 (462)
T PRK15034 122 QNPNTPFGIFIVIALLCGFA-GANFASSMG-NISFFFPKAKQGSALGINGGLGN----LGVSVMQLVAPLVIFVPVFAFL 195 (462)
T ss_pred cccCCCHHHHHHHHHHHHHH-HHhHHHHHH-HHHHHCCHhHhHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998 666677666 66665 567776666544444 3444444444443311 11112
Q ss_pred CC-----------CcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhh
Q 019522 194 SL-----------GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGS 262 (340)
Q Consensus 194 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (340)
+| .|+....+..++.++..++.....++.+ ++++ .. ++..+.+|+|+.|.+++...+....
T Consensus 196 G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~-~~~~---~~----~~~~~vlk~~~~Wllslly~~tFG~ 267 (462)
T PRK15034 196 GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA-SSRA---SI----ADQLPVLQRLHLWLLSLLYLATFGS 267 (462)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cccc---CH----HHHHHHhCCCchhHHHHHHHHHHHH
Confidence 22 1333333333333333333322222211 1111 11 2234578999999988877665555
Q ss_pred HHHHHHhhccccccCCCCchhh-HHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 019522 263 MYTFVFLWTPALSPNDEEIPHG-FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV 321 (340)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 321 (340)
... ...+.|.|.++.++.... ....+..+...+.++++|+++||+|+++ ++.....
T Consensus 268 fvg-~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~--vl~~~~i 324 (462)
T PRK15034 268 FIG-FSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR--VTLINFI 324 (462)
T ss_pred HHH-HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH--HHHHHHH
Confidence 544 477899988776633222 2233345678888999999999999984 4444443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=175.35 Aligned_cols=270 Identities=9% Similarity=0.046 Sum_probs=176.0
Q ss_pred HHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh---ccchHH
Q 019522 50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK---HSPQYK 125 (340)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~---~~~~~~ 125 (340)
.+.++...|.+|.+++++|+|+.+.|++.+..+++..+.+++.|++.||+|||+++..+..+.+++. +.. ..++++
T Consensus 16 G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~ 95 (410)
T TIGR00885 16 GFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYT 95 (410)
T ss_pred HHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3444555799999999999999999999999999999999999999999999999999999999987 532 346899
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc----------
Q 019522 126 ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---------- 192 (340)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~---------- 192 (340)
.+++.|++.|+|.+...+..++ ++.+. ++|+++.+..+..++ +|..+|+.+++.+.....+.
T Consensus 96 ~~l~~~~l~G~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~ 170 (410)
T TIGR00885 96 LFLVGLFILTAGLGFLETAANP-YILVMGPESTATRRLNLAQSFNP----FGSIIGMVVAQQLILSNLPHQSQDVLDKLS 170 (410)
T ss_pred HHHHHHHHHHhhHHHHHhhhhH-HHHHHCCHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCccchhhhhhhcC
Confidence 9999999999999999887766 55443 455665555555554 44445555544442211000
Q ss_pred ----------cCCCcchhhhhHHHHHHHHHHHHh-cccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhh
Q 019522 193 ----------FSLGPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEG 261 (340)
Q Consensus 193 ----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (340)
...+||.+|.+.+.+.++..+... .+.|+.+++++++ ++.+++.++++|+|+++......++...
T Consensus 171 ~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~f~yvg 246 (410)
T TIGR00885 171 PEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQ----ISFSASLSRLARIRHYREGVIAQFFYVG 246 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc----ccchhhHHHHHhChhHHHHHHHHHHHHH
Confidence 012366778776665554433332 2334322111111 1112233466788888776555555444
Q ss_pred hHHHHHHhhccccccCC-CCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHH
Q 019522 262 SMYTFVFLWTPALSPND-EEIPHG---FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPI 331 (340)
Q Consensus 262 ~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 331 (340)
.... ..++.+.|.++. .+.+.+ ...........+|+++.+++.||+++|+ .+......+.+++.+..
T Consensus 247 ~e~~-~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~--~l~i~~~~~~~~~ll~~ 317 (410)
T TIGR00885 247 VQIM-CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK--VLMAYAIIGMALCLGSI 317 (410)
T ss_pred HHHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHHH
Confidence 4333 467788887643 233332 2344455678899999999999998884 45455444444444433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=179.62 Aligned_cols=244 Identities=18% Similarity=0.174 Sum_probs=169.1
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.+..|.+.+++|.++.+.+++.+...++..+..++.|+++||+|||+++..+.++.+++. +.+++++++.+++.|++.|
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 93 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG 93 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 455788999999999999999999999999999999999999999999999999998887 7788899999999999999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+.... ++.|. ++|++..+......+ +|..+++.+...+.+..+|+ ..|...++..++..
T Consensus 94 ~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~--------~g~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 94 AAEAPFFPGIIL-IVASWFPASERATAVSIFNSAQG--------LGGIIGGPLVGWILIHFSWQ--WAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHhhhhHHHH-HHHHhCCHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHHHhCCch--HHHHHHHHHHHHHH
Confidence 999998887766 77775 456664444333333 44455555555544445555 66666555544444
Q ss_pred HHHhcccccccCCCc---cchHHH--HH-------------HHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcccc
Q 019522 213 VIILSSWTENYGDPS---ESKDLL--TQ-------------FRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (340)
Q Consensus 213 ~~~~~~~~~~~~~~~---~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (340)
.......+|++++++ ++++.. ++ ..+..++.+|+|+++.......+...... ....+.|.|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 241 (399)
T TIGR00893 163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLG-FFLTWFPTY 241 (399)
T ss_pred HHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence 333222333222111 110000 00 01123456778888776555554444444 357788988
Q ss_pred ccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 275 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.++..+.+. +.......++.+++.++.+++.||+++|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 877666654 45566778888999999999999999884
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-22 Score=174.63 Aligned_cols=255 Identities=18% Similarity=0.156 Sum_probs=156.6
Q ss_pred HHHHHHHHHhhhhHHHHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHH-HHHHHHHHh-hhhcc
Q 019522 45 VYSLMMAGDWLQGPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT-YCLTYILSC-ITKHS 121 (340)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~-~~~~~~~~~-~~~~~ 121 (340)
..++.....+...|++|.+ .+++|.|+.++|++.+...+.+.+.+++.|+++||+||||.+.. +.....++. +.+++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 4455555566667887764 57899999999999999988899999999999999999987665 445555565 77888
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchh
Q 019522 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP 200 (340)
Q Consensus 122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~ 200 (340)
++++.+++.|++.|.+.+...|...+ +..|. +++++...........+.. +|..+++.++..+.+..+ |+..
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~ig~~~~~~l~~~~~--~~~~ 157 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFA-LAREHADRTGREAVMFSSVMRAQIS----LAWVIGPPLAFWLALGFG--FTVM 157 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHhhhcchhhHHHHHHHHHHHh----HHHHHhhhHHHHHHHhcc--cHHH
Confidence 99999999999998877777776655 55554 3333321111122222223 444555555555554444 5567
Q ss_pred hhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCC
Q 019522 201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE 280 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (340)
|++.+...++..+......||.+++++++++ . .+.++.+++++.+.......+.... ......+.|.|.++..+
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 231 (375)
T TIGR00899 158 FLTAALAFVLCGVLVWLFLPSYPRGAPGALT-R----LEVRGLLASRDTRLLFVACTLMWGC-NILYIINMPLLIIHELG 231 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCcccccC-c----chhhhhhcCcchHHHHHHHHHHHHH-HHHHHhhhHHHHHHHcC
Confidence 7776665554444433334443222111111 0 1122345566555443333332222 22235567777766656
Q ss_pred chhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 281 IPHG---FIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 281 ~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.++. ...........++.++.+++.||+++|+
T Consensus 232 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 266 (375)
T TIGR00899 232 LPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR 266 (375)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence 5553 3334444556778889999999999885
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=175.12 Aligned_cols=245 Identities=16% Similarity=0.051 Sum_probs=148.0
Q ss_pred HHHHHHHHHhhhhHHHHH-HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc--
Q 019522 45 VYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-- 120 (340)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~-- 120 (340)
..++.....++..|.+|. +.+++|.|+.+.|++.+...+...+.+++.|+++||+||||++..+.++.+++. .+.+
T Consensus 23 ~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~ 102 (399)
T PRK05122 23 FTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAG 102 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhh
Confidence 334444555666788886 567899999999999999999999999999999999999999999998887754 3322
Q ss_pred -c-----chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 019522 121 -S-----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD 191 (340)
Q Consensus 121 -~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~ 191 (340)
. .++..+++.|+++|++.+...+...+ ++.|. ++|++..++.....+ .|..+++.++..+.+
T Consensus 103 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~--------~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 103 LLAAWPVLSLLLLLLGRLLLGIGESLAGTGSIL-WGIGRVGALHTGRVISWNGIATY--------GALAIGAPLGVLLYH 173 (399)
T ss_pred hhhccchhHHHHHHHHHHHHHhhHHhhcchHHH-HHHhhcChhhhccchhhhhhhhh--------HHHHHHHHHHHHHHH
Confidence 2 25668899999999999998887655 54443 666664444333332 333444444444444
Q ss_pred ccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhc
Q 019522 192 SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT 271 (340)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (340)
..+| +..+.+......+..... ...|+++++++++. +.++..+..+++ .....+ ....+.....+.
T Consensus 174 ~~g~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~ 239 (399)
T PRK05122 174 WGGL--AGLGLLIMLLALLGLLLA-RPRPAVPPVKGERL----PFRRVLGRVWPY------GMGLAL-ASIGFGTIATFI 239 (399)
T ss_pred cccH--HHHHHHHHHHHHHHHHHH-hcCCCCCCCCccch----hHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHH
Confidence 4454 455555544444333333 23333222111111 111111111111 111111 112222234556
Q ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 272 PALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
|.|.++....+.+.......++.+++++..+++.||+++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 280 (399)
T PRK05122 240 TLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLR 280 (399)
T ss_pred HHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 66554432122345556677888899999999999999874
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=173.32 Aligned_cols=266 Identities=18% Similarity=0.208 Sum_probs=158.4
Q ss_pred cccccchhhHHHHHHHHHHHHHhhhhHHHHH-HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHH-HHH
Q 019522 32 SSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-TYC 109 (340)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~-~~~ 109 (340)
-+.++...+.+++..++......+..|.+|. +.+++|.|++++|.+.+.....+.+.+++.|..+||+||||.++ .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~ 89 (393)
T PRK15011 10 AKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCC 89 (393)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 3445556666777777777777777788665 56789999999999987766666766666555599999998754 555
Q ss_pred HHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 019522 110 LTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (340)
Q Consensus 110 ~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 187 (340)
+..+++. +.+++++++.+++.+.+.|...+...|...+ +..|+ ++|++......+..+.+.. +|..+++.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----lg~~~g~~i~~ 164 (393)
T PRK15011 90 LLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFA-LAREHADKTGREAVMFSSFLRAQVS----LAWVIGPPLAY 164 (393)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHhhhccchHHHHHHHHHHHHH----HHHHHhhHHHH
Confidence 5555666 6678889988766655544444555566655 66655 4444432222233333333 45555555555
Q ss_pred hhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchh-HHHHHHHHHHhhhhHHHH
Q 019522 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK-IALLGAIQSLFEGSMYTF 266 (340)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (340)
.+.++.|| |..|+..++..++..+......||.++++++.++..+ ...++++ .+.......... ..+..
T Consensus 165 ~l~~~~gw--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~ 234 (393)
T PRK15011 165 ALAMGFSF--TVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTLE-------APRRNRRDTLLLFVICTLMW-GTNSL 234 (393)
T ss_pred HHHHhcCh--HHHHHHHHHHHHHHHHHHHhhcCccCCCCcccccccc-------ccccccccHHHHHHHHHHHH-HHHHH
Confidence 55554555 4777777666555554443444554322221111001 1122322 222222222222 33333
Q ss_pred HHhhccccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 267 VFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
...+.|.|.++..+.++. .......++.+++.++.|+++||+++|+
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~ 283 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF 283 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 456788888776666653 3444445667788999999999999985
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=174.34 Aligned_cols=242 Identities=14% Similarity=0.091 Sum_probs=158.6
Q ss_pred HhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHH
Q 019522 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR 131 (340)
Q Consensus 53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r 131 (340)
.....|.+|.+.+++|.|+.+.+++.+...+...+++++.|+++||+|||+.+..+..+..++. ...++++++.+++.|
T Consensus 24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (394)
T PRK11652 24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAAS 103 (394)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3344677899999999999999999999999999999999999999999999999999888877 777889999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHH
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (340)
++.|++.+...+.... +..|. +++++ .....+. +..++..+++.++..+.+..+ |+..|+..++..
T Consensus 104 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~g~~i~~~l~~~~g--~~~~f~~~~~~~ 172 (394)
T PRK11652 104 AIQGLGTGVGGVMART-LPRDLYEGTQLRH----ANSLLNM----GILVSPLLAPLIGGLLTTLFG--WRACYLFLLLLG 172 (394)
T ss_pred HHHHhhhhHHHHHHHH-HHHHhcCHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 9999998877665544 55554 22333 2222333 333444555555555554444 456676655544
Q ss_pred HHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hH
Q 019522 209 AIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF 285 (340)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 285 (340)
.+.........||++++++++ ++.++..++.+|+|+.+........... .......+.+.+.++..+.+. +.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~ 247 (394)
T PRK11652 173 AGVTFSMARWMPETRPADARR----TRVLASYRTLLSNRRFNCYLLMLIGTLA-GIAVFEACSGVLMGAVLGLSSMTVSI 247 (394)
T ss_pred HHHHHHHHHhCCccCccccch----hHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHhChHHHHHHcCCCHHHHHH
Confidence 433333323445543322221 1133455667788877654433322222 222224456666666556555 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC
Q 019522 286 IFATFMLASMLGSSLASRLMARSPP 310 (340)
Q Consensus 286 ~~~~~~~~~~~~~~~~g~l~dr~g~ 310 (340)
......++.+++..+.+++.||.++
T Consensus 248 ~~~~~~~~~~~g~~~~~~l~~~~~~ 272 (394)
T PRK11652 248 LFILPIPAAFFGAWFAGRPNKRFST 272 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777888888888888873
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=174.88 Aligned_cols=253 Identities=22% Similarity=0.197 Sum_probs=153.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhCCChhh-----hHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh
Q 019522 45 VYSLMMAGDWLQGPYVYYLYSTYGFGKGE-----IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT 118 (340)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~ 118 (340)
..+..........|++|.+.+++|.+..+ .|.+.+...+...+.+++.|+++||+|||+++..+.+..+++. +.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence 33344444455578899999999998665 3788888888899999999999999999999999998888877 67
Q ss_pred hccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCC
Q 019522 119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL 195 (340)
Q Consensus 119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~ 195 (340)
.+.++++.+++.|++.|++.+. .+...+ ++.|. ++|++..+.. ..+.. +|..+++.+.+.+.+..+|
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~----~g~~~~~~~~~~l~~~~~~ 171 (408)
T PRK09874 102 GLAQNIWQFLILRALLGLLGGF-VPNANA-LIATQVPRNKSGWALGTL----STGGV----SGALLGPLAGGLLADSYGL 171 (408)
T ss_pred HHHhhHHHHHHHHHHHHHhhhh-HHhHHH-HHHHhcCHhhhhHHHHHH----HHHHH----HHHHHHHHHHHHHHHHhCH
Confidence 7889999999999999997654 455544 55444 4555533333 22233 3444444444444444454
Q ss_pred CcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccc
Q 019522 196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS 275 (340)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (340)
+ ..+.+.+.+.++..+......+|+.++++++++ .+. ++..+.+++++.+.......+...........+.+.|.
T Consensus 172 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T PRK09874 172 R--PVFFITASVLFLCFLVTLFCIRENFQPVSKKEM--LHM-REVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYV 246 (408)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHhccCcccccchhh--hHH-HHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 566666555444444332333333221111111 111 12233456766654333222222222222345556565
Q ss_pred cCCCCc-h-----hhHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 276 PNDEEI-P-----HGFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 276 ~~~~~~-~-----~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.+..+. + .+.......++.+++.+..+++.||+++|+
T Consensus 247 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~ 289 (408)
T PRK09874 247 RELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK 289 (408)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 442221 1 123344556778888899999999999885
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=170.91 Aligned_cols=268 Identities=18% Similarity=0.171 Sum_probs=181.8
Q ss_pred HHHHHHHHHhhh-hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc-
Q 019522 45 VYSLMMAGDWLQ-GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS- 121 (340)
Q Consensus 45 ~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~- 121 (340)
.++...+..|+. +|..+.+.+|+|+|++|.+++.....+.+.+..++.|.+.||+|.|++...+.++..+-+ ..+++
T Consensus 21 ~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~ 100 (417)
T COG2223 21 LAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV 100 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc
Confidence 344444555555 677788889999999999999999999999999999999999999999999999998866 55554
Q ss_pred --chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCC-
Q 019522 122 --PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL- 195 (340)
Q Consensus 122 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~- 195 (340)
++++++++.+.+.|++.+.. ....+ .++++ +++|...++.. . -++|..+...++|.+... .++
T Consensus 101 ~~~~~~~ll~~gll~G~~GasF-av~m~-~~s~~fP~~~qG~AlGI~g-~----GN~G~av~q~~~P~v~~~----~g~~ 169 (417)
T COG2223 101 TYPSTWQLLVIGLLLGLAGASF-AVGMP-NASFFFPKEKQGLALGIAG-A----GNLGVAVAQLVAPLVAVA----FGFL 169 (417)
T ss_pred cCCchHHHHHHHHHHhccccee-hcccc-cccccCChhhhhHHHHHhc-c----ccccHHHHHHHHHHHHHH----HhhH
Confidence 45569999999999985554 55556 67765 66666555544 2 233444444555544443 441
Q ss_pred CcchhhhhHHHHHHHHHHHHh---cccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcc
Q 019522 196 GPVAPFDAAACFLAIGMVIIL---SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (340)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (340)
.|+....+..+..++..+... ...||.+.+.++. .+ ...+.+.++++.|.+++........... ...+.|
T Consensus 170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~---~~---~~~~~v~~~~~~W~lsllY~~tFG~Fvg-fs~~l~ 242 (417)
T COG2223 170 AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ---LP---AQLKAVFSNKDTWLLSLLYFATFGGFVG-FSAYLP 242 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc---ch---hHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHH
Confidence 133333333333333222222 2223322211111 10 3445678899999998888777766666 589999
Q ss_pred ccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHH
Q 019522 273 ALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV 332 (340)
Q Consensus 273 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 332 (340)
.|++++++.++. .......+.+.+.++++|+++||+|.+ +++...+...+++.....+
T Consensus 243 ~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~--rv~~~~f~~~~~~~~~l~~ 303 (417)
T COG2223 243 MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR--RVTLAVFVGMALAAALLSL 303 (417)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch--hHHHHHHHHHHHHHHHHHc
Confidence 999999988774 455666777888999999999999988 4555555555555544443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=172.72 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=155.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchH
Q 019522 46 YSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQY 124 (340)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~ 124 (340)
.++.....+...|++|.+.+++|.|+.++|++.+...++..+++++.|+++||+|||+++..+.++.+++. .+++++|+
T Consensus 15 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~ 94 (381)
T PRK03633 15 LLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGF 94 (381)
T ss_pred HHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 33344444555788999999999999999999999999999999999999999999999999999999888 77889999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhh
Q 019522 125 KILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD 202 (340)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~ 202 (340)
+.+++.|+++|++.+...+...+....+. ++|++..+.... +..+|..+|+.+++.+.+. .. +...+.
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~l~~~----~~--~~~~~~ 164 (381)
T PRK03633 95 WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMM----VYYLGTVLGQLLVSKVSTE----LM--SVLPWV 164 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccc----cc--chHHHH
Confidence 99999999999999988777655233222 455554443333 3334444444444443322 11 112222
Q ss_pred hHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCch
Q 019522 203 AAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP 282 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (340)
.......+ ......+.+++++++ +++ ++.++.+|+|+++..... .+.....+.....+.|.|.++. +.+
T Consensus 165 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lp~~~~~~-g~s 233 (381)
T PRK03633 165 TGLVLAAI-LPLLFTRILNQQAEN-HDS-------TSIWPMLKLRQARLGVNG-CIISGIVLGSLYGLMPLYLNHQ-GMS 233 (381)
T ss_pred HHHHHHHH-HHHHHhcccCCCCCC-CCC-------CCHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 22111111 111212222221111 110 112234566665543222 2222223333456678877653 444
Q ss_pred h---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 283 H---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 283 ~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
. +.......++.+++++..+++.||+++|+
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 266 (381)
T PRK03633 234 DASIGFWMALLVSAGILGQWPIGRLADRFGRLL 266 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH
Confidence 3 45556667888999999999999999884
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=177.68 Aligned_cols=263 Identities=11% Similarity=0.106 Sum_probs=164.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHH
Q 019522 35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (340)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~ 110 (340)
.++.+|..+..+++.......+ ....|.+.++ |+++.+.|+..+...++..+++++.|+++||+|||+++..+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~ 101 (452)
T PRK11273 23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 101 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence 3444565555555544444443 3447888887 9999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hhhcc----chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhH-HHHH
Q 019522 111 TYILSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGL-VAIL 181 (340)
Q Consensus 111 ~~~~~~-~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~i-g~~~ 181 (340)
+.+++. ..++. ++++.+++.|++.|++.+...+.... .+.|. ++|++..+.... +..+|..+ ++++
T Consensus 102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~-~~~~~~~~~~r~~~~~~~~~----~~~~g~~~~~~l~ 176 (452)
T PRK11273 102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSVWNC----AHNVGGGLPPLLF 176 (452)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHH-HHHHhCChHHHHHHHHHHHH----HHHhhhhHHHHHH
Confidence 888877 55554 46788899999999999888776655 55543 556664444322 33333212 2222
Q ss_pred HHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCC---Cccch-------------HHHHHHHHH-HHHHh
Q 019522 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD---PSESK-------------DLLTQFRGA-AVAIA 244 (340)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------~~~~~~~~~-~~~~~ 244 (340)
+... ....+| +..|++.+.+.++..++.....+|++++ +++++ +..++.++. .+..+
T Consensus 177 ~~~~----~~~~gw--~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (452)
T PRK11273 177 LLGM----AWFNDW--HAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVL 250 (452)
T ss_pred HHHH----HHhccH--HHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHH
Confidence 1111 111244 4667665554444333222222322110 00000 000001111 22467
Q ss_pred hchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 019522 245 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPP 310 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~ 310 (340)
|++.++...+...+.....+. ...|.|.|+++..+.+. +.......++.+++.++.|+++||+++
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~ 318 (452)
T PRK11273 251 PNKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 318 (452)
T ss_pred cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888888776666665555555 47899999987666554 344556677888999999999999943
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=173.04 Aligned_cols=264 Identities=21% Similarity=0.252 Sum_probs=163.6
Q ss_pred cchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHH
Q 019522 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (340)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (340)
++++++.+..+....+.++++ .+..|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 445555555555555555443 4558899999999999999999999998889999999999999999999999998
Q ss_pred HHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 019522 112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (340)
Q Consensus 112 ~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 187 (340)
.+++. +..+.++++.+++.|++.|++.+...+...+ ++.|. ++|++..+....... +|..+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~--------~g~~~~~~~~~ 162 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA-LVSEYAPKRFRGTAVGLMFCGYP--------IGAAVGGFLAG 162 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHH-HHHHHcCHHhhchhHhhHhhHHH--------HHHHHHHHHHH
Confidence 88877 7778899999999999999999988887766 77775 456664444333332 44444455555
Q ss_pred hhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccC----C-Cccc----------------------hHHHHHHHHHH
Q 019522 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG----D-PSES----------------------KDLLTQFRGAA 240 (340)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~----------------------~~~~~~~~~~~ 240 (340)
.+.+..+|+ ..+.+.+....+.........||+.+ + +++. ++..++.++..
T Consensus 163 ~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (398)
T TIGR00895 163 WLIPVFGWR--SLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF 240 (398)
T ss_pred HHhhcccce--eehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHH
Confidence 555545555 44555433333322222222333211 0 0000 00000011111
Q ss_pred HHHhhc---hhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 241 VAIASD---EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 241 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+.++++ ++.+....... .....+.....|.|.+. +..+.+. +.......++.++++++.+++.||+++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (398)
T TIGR00895 241 KALFQGKTARITVLLWLLYF-MLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV 316 (398)
T ss_pred HHHhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 122222 22222222222 23333344567777444 3334433 45566778889999999999999999873
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=176.75 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=119.4
Q ss_pred cchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHH
Q 019522 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (340)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (340)
++.+|+.+....+..+.+.++ .+..|.+.+++|+|+.+.+++.+...++..+++++.|+++||+|||+.+..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 445566555555565555555 4668999999999999999999999998889999999999999999999999999
Q ss_pred HHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 019522 112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (340)
Q Consensus 112 ~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 187 (340)
.+++. +.++++|++.+++.|++.|++.+...+.... ++.|. ++|++..+.... + ..+|..+++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~----~----~~~g~~~~~~~~~ 165 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSAT-YVIESWPKHLRNKASGFLIS----G----FSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHH----H----HHHHHHHHHHHHH
Confidence 98888 7788899999999999999999988787766 66665 445553333322 2 2355555555555
Q ss_pred hhhcccCCCcchhhhhHHHH
Q 019522 188 LLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~ 207 (340)
.+.+..+|+ ..|.+....
T Consensus 166 ~l~~~~~w~--~~f~~~~~~ 183 (496)
T PRK03893 166 LVVPVWGWR--ALFFIGILP 183 (496)
T ss_pred HHhccCCHH--HHHHHHHHH
Confidence 555555554 556554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=170.80 Aligned_cols=270 Identities=13% Similarity=0.079 Sum_probs=171.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHH-H-Hh-hhhc
Q 019522 44 LVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI-L-SC-ITKH 120 (340)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~-~-~~-~~~~ 120 (340)
...+......+...|++|.+.+|+|.|.+++|.+.+...+...+.++++|+++||+|||+.......... + .. ....
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG 90 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445667899999999999999999999999999999999999999999998544322222111 1 11 3346
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcch
Q 019522 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA 199 (340)
Q Consensus 121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~ 199 (340)
+++++.+++.|.++|.+.+...|...+ +..|+ ++|++..+......+ +|..+++.+++.+.++.||+ .
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~a-l~~~~~~~~~~~~g~~~~~~s--------lG~~~g~~l~g~l~~~~g~~--~ 159 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDA-LANTWQKQFGLDYGKVRLIGS--------AAFIIGSALFGGLIGMFDEQ--N 159 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHH-HHHHHHHHcCCCccHHHHHHH--------HHHHHHHHHHHHHHHHcChh--H
Confidence 789999999999999988888787766 55554 556665444433333 55566666666666656665 4
Q ss_pred hhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCC
Q 019522 200 PFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279 (340)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (340)
.|.+......+..... ...++.+++++++++ .++..++.++++|||+++.......+.+..... ...+.|.|.++ .
T Consensus 160 ~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~-~ 235 (382)
T TIGR00902 160 ILAILTAGLAFMLIGF-LIKPTIPPKDAIPED-ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAA-YYGFSAIYWQA-A 235 (382)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCCCCCcccccc-ccccchhHHHHHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-C
Confidence 5655443322222222 112221111111111 111122345678999998877666665555444 46688888866 5
Q ss_pred Cchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHH
Q 019522 280 EIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP 330 (340)
Q Consensus 280 ~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 330 (340)
|.++ +.......++.+++....+++.||+|+| +.+..+.....+.....
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~--~~l~~~~~~~~~~~~~~ 287 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR--DLLLISAIACVGRWAII 287 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH--HHHHHHHHHHHHHHHHH
Confidence 6655 3555666777888899999999999988 45555555555444433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=178.21 Aligned_cols=244 Identities=14% Similarity=0.066 Sum_probs=158.0
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.+..|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+++..+..+.+++. .+.++++++.+++.|+++|
T Consensus 30 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 109 (471)
T PRK10504 30 NTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQG 109 (471)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 577999999999999999999888888778889999999999999999999988888877 7778899999999999999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+.... ++.|. ++|+... +....... +|..+++.+++.+.++.+|+ +.|.+......+..
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~----~g~~~g~~~~g~l~~~~gw~--~~f~~~~~~~~l~~ 178 (471)
T PRK10504 110 VGGAMMVPVGRL-TVMKIVPREQYMAAM----TFVTLPGQ----VGPLLGPALGGLLVEYASWH--WIFLINIPVGIIGA 178 (471)
T ss_pred hhhHHHHHHHHH-HHHHHcCHHHHHHHH----HHHHHHHH----HHHHhhhHHHHHHHhhccHH--HHHHHHHHHHHHHH
Confidence 999998887755 66665 3333322 22222223 44444555555555545554 56666554444443
Q ss_pred HHHhcccccccCCCccchHH-------------------------H------------------HHHHH-----HHHHHh
Q 019522 213 VIILSSWTENYGDPSESKDL-------------------------L------------------TQFRG-----AAVAIA 244 (340)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~-------------------------~------------------~~~~~-----~~~~~~ 244 (340)
.......|+.+.++.+.+.. . .+.++ ...+++
T Consensus 179 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (471)
T PRK10504 179 IATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLF 258 (471)
T ss_pred HHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHh
Confidence 33322222221111000000 0 00000 012356
Q ss_pred hchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 245 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
|||++........+... .+.....+.|.|.++..|.++ +.......++.+++.++.+++.||+|+|+
T Consensus 259 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~ 328 (471)
T PRK10504 259 RTRTFSLGLAGSFAGRI-GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRR 328 (471)
T ss_pred cccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 77777765444444333 344445667877776555554 34455556667778889999999999985
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=175.24 Aligned_cols=257 Identities=16% Similarity=0.092 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh
Q 019522 41 NYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK 119 (340)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~ 119 (340)
.++...++.....+...+.+|.+.++++.++.+.|++.+...+...+++++.|+++||+|||+++..+..+.+++. ..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 3334445555566666778899999999999999999999999999999999999999999999998887777654 322
Q ss_pred -----ccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 019522 120 -----HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD 191 (340)
Q Consensus 120 -----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~ 191 (340)
..++++.+++.|++.|++.+...+...+ .+.|. ++|++..+.. ..... +|..+++.+++.+.+
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~----~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 101 LNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLA-ATPALVGRENLMQAGAIT----MLTVR----LGSVISPALGGLLIA 171 (417)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhh-hhhhccCHHHHHHHHHHH----HHHHh----HHHHhHHHHHHHHHH
Confidence 2567888999999999998877676655 66655 3344433332 22233 444444444444444
Q ss_pred ccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhc
Q 019522 192 SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT 271 (340)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (340)
..+|+|. +...++..++..+.. .+.|+++++++++++..++..+..+..+|+|.++.......+ ..... ....+.
T Consensus 172 ~~~~~~~--~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~ 246 (417)
T PRK10489 172 AGGVAWN--YGLAAAGTFITLLPL-LRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGL-LTMAS-AVRVLY 246 (417)
T ss_pred HHhhHHH--HHHHHHHHHHHHHHH-HhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHH-HHHHH-hHHHhh
Confidence 4556544 555444444433333 344443322222222233334455567777776554333322 22222 346678
Q ss_pred cccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 019522 272 PALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPR 311 (340)
Q Consensus 272 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 311 (340)
|.|.++..|.++ +.......++.+++.++.+++.||.+++
T Consensus 247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~ 289 (417)
T PRK10489 247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG 289 (417)
T ss_pred HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 888887666655 4555677788999999999999986555
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=168.59 Aligned_cols=243 Identities=11% Similarity=0.065 Sum_probs=160.4
Q ss_pred hhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHH
Q 019522 54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI 132 (340)
Q Consensus 54 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~ 132 (340)
....|..|.+.+++|.++++.++..+...++..+++++.|+++||+|||+.+..+..+..++. ++.++++++.+++.|+
T Consensus 23 ~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (401)
T PRK11043 23 DMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRF 102 (401)
T ss_pred HHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 344677888999999999999999999999899999999999999999999999998888877 7788899999999999
Q ss_pred HHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 133 LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++|++.+...+...+ ++.|..++.+..+.... .... ..++..+++.++..+.+..+|+ ..+++.+...++..
T Consensus 103 l~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~g~~i~~~l~~~~g~~--~~~~~~~~~~~~~~ 174 (401)
T PRK11043 103 VQAVGVCSAAVIWQA-LVIDRYPAQKANRVFAT-IMPL----VALSPALAPLLGAWLLNHFGWQ--AIFATLFAITLLLI 174 (401)
T ss_pred HHHhhhHHHHHHHHH-HHHHhcCcHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHH
Confidence 999998877666555 66665322222222211 1112 2244455555555555555554 66666555554444
Q ss_pred HHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHH
Q 019522 213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT 289 (340)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 289 (340)
... ...+|+++++++ + +.+.+.++.+|+|+.+.......+.....+. ...+.|.+.++ .|.+. +.....
T Consensus 175 ~~~-~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~-~g~s~~~~g~~~~~ 246 (401)
T PRK11043 175 LPT-LRLKPSKKARKQ-S----QDALTFKQLLKSKTYLGNVLIFAACSAAFFA-WLTGSPFILEQ-MGYSPADIGLSYVP 246 (401)
T ss_pred HHH-HHcCCCCCcccc-c----hHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHhHHHHHH-cCCCHHHHHHHHHH
Confidence 433 223333222111 1 1123445677788776544443333333333 35667777654 45554 344455
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCc
Q 019522 290 FMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 290 ~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
..++.+++.+..+++.||+++|+
T Consensus 247 ~~~~~~~g~~~~~~l~~r~~~~~ 269 (401)
T PRK11043 247 QTIAFLVGGYGCRAALQKWGGEQ 269 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHH
Confidence 56778889999999999998774
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=168.10 Aligned_cols=256 Identities=16% Similarity=0.083 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh
Q 019522 40 NNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT 118 (340)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~ 118 (340)
+.+....++..+.+.......+.+.+|++.++.+.+++.+...+...+.+++.|+++||+||||++..+..+.+++. .+
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 34444444445555555444666788999999999999999999999999999999999999999999999998877 55
Q ss_pred hccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCC
Q 019522 119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL 195 (340)
Q Consensus 119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~ 195 (340)
.+.++. ++.|+++|++.+...|...+ ++.|. ++|++..++.... ...+..+|+.+++.+.++
T Consensus 86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a-~i~~~~~~~~~~~a~~~~~~~----~~~~~~~Gp~lgG~l~~~------- 150 (393)
T PRK11195 86 LFGIHP---LLAYGLVGIGAAAYSPAKYG-ILTELLPGEKLVKANGWMEGS----TIAAILLGTVLGGALADP------- 150 (393)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-------
Confidence 565554 67899999999999998877 77775 5566644444333 334444455555444332
Q ss_pred CcchhhhhHHHHHHHHHHHHhcccccccCCCc---cc-hHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhc
Q 019522 196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPS---ES-KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT 271 (340)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (340)
.|+..+.+.+...++..... ...||++++++ ++ .+..++..+..+.++++|.+........+....... .....
T Consensus 151 ~~~~~~~i~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 228 (393)
T PRK11195 151 HAEAALAVCALIYLLAALFN-LFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGAT-LRFLV 228 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHH-HHHHH
Confidence 24455555444333332222 34444332211 11 111233334455677887765443333333222222 23334
Q ss_pred cccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 272 PALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 272 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
|.|.++..|.++ +.......++.+++.+..+++.||.++++
T Consensus 229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~ 272 (393)
T PRK11195 229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR 272 (393)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 445555455544 46667778889999999999999987774
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=172.80 Aligned_cols=244 Identities=14% Similarity=0.142 Sum_probs=164.0
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.+..|.+.+++|.|+.+.|++.+...++..+..++.|+++||+|||+++..+.++.+++. +.+++++++.+++.|++.|
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNG 94 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455788999999999999999999999999999999999999999999999999999988 7788999999999999999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+...+ ++.|. ++|++..+....... +|..+++. .+...+.+..+|+ ..+.+.+.+.++..
T Consensus 95 ~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~----~g~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 164 (379)
T TIGR00881 95 IFQGMGWPPCGR-TVTKWFSRSERGTWVSFWNCSHN----VGGGLLPP---LVLFGIAELYSWH--WVFIVPGIIAIIVS 164 (379)
T ss_pred hhccccCCchHH-HHHHhcCHhhheeeEeehhccch----hHHHHHHH---HHHHHHHhcCCch--hHHHHHHHHHHHHH
Confidence 999988888766 77665 456664444433333 33333331 2222333334444 55666655444433
Q ss_pred HHHhcccccccCCC----------ccch-------HHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccc
Q 019522 213 VIILSSWTENYGDP----------SESK-------DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS 275 (340)
Q Consensus 213 ~~~~~~~~~~~~~~----------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (340)
+......+|+++++ ++.+ +..++.+...+..+|+|.++.......+....... ...+.|.|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 243 (379)
T TIGR00881 165 LICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG-ILDWSPLYL 243 (379)
T ss_pred HHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33322222221100 0000 00011122345567888887765555554444444 477888888
Q ss_pred cCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 019522 276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPR 311 (340)
Q Consensus 276 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 311 (340)
++..+.+. +.......++.++++++.+++.||..++
T Consensus 244 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~ 282 (379)
T TIGR00881 244 TQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG 282 (379)
T ss_pred HHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence 77666654 4556667788999999999999986433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=173.53 Aligned_cols=186 Identities=15% Similarity=0.037 Sum_probs=130.9
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhh-----CCChhhhHHHHHHHHhhhhhhhhhhhhccccccc
Q 019522 31 TSSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY-----GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR 101 (340)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr 101 (340)
++.++.++++....++.+..+.++++ +...|.+.+++ +.++.+.+++.+...++..+++++.|+++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr 85 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR 85 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44667778888888888888888888 23356555532 3455677888888999888999999999999999
Q ss_pred hHHHHHHHHHHHHHh-hhhccch------HHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHH
Q 019522 102 KRACVTYCLTYILSC-ITKHSPQ------YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAI 171 (340)
Q Consensus 102 r~~l~~~~~~~~~~~-~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~ 171 (340)
|+++..+.++..++. +.+++++ +..+++.|+++|++.+...+.... ++.|. ++|++..+........+.
T Consensus 86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~-~~~e~~p~~~Rg~~~~~~~~~~~~g~ 164 (502)
T TIGR00887 86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAI-ITSEFATKKWRGAMMAAVFAMQGFGI 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 999999999998877 6666654 778999999999999999888755 88886 667775555555444333
Q ss_pred HhhhhHHHHHHHhhhhhhhc-----------------ccCCCcchhhhhHHHHHHHHHHHHhcccccc
Q 019522 172 FLGNGLVAILSGLFGNLLVD-----------------SFSLGPVAPFDAAACFLAIGMVIILSSWTEN 222 (340)
Q Consensus 172 ~~g~~ig~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (340)
. +++.++..+.....+ ..+|+||.++.+.++..++..+.. +..||+
T Consensus 165 ~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~-~~lpES 227 (502)
T TIGR00887 165 L----AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR-LTIPET 227 (502)
T ss_pred H----HHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 3 444443332221110 124578888877766665554444 445554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=176.15 Aligned_cols=265 Identities=12% Similarity=0.011 Sum_probs=175.0
Q ss_pred ccchhhHHHHHHHHHHHHHhhh---hHH-HHHHHH----------------------hhCCChhhhHHHHHHHHhhhhhh
Q 019522 35 FNSFKNNYLLVYSLMMAGDWLQ---GPY-VYYLYS----------------------TYGFGKGEIGQLFIAGFGSSMLF 88 (340)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~----------------------~~g~s~~~~g~~~~~~~~~~~~~ 88 (340)
+.+.++.+..+.+.+...+..+ ..+ .+.+.+ |++++..+.|.+.+...++..++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 4555666666666666655555 111 334444 78999999999999999999999
Q ss_pred hhhhhhccccccchHHHHHHHHHHHHHh-hhhc--cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHH
Q 019522 89 GTIVGSLADKQGRKRACVTYCLTYILSC-ITKH--SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQW 162 (340)
Q Consensus 89 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~ 162 (340)
+++.|+++||+|||+++..+.++.+++. ++.+ .+++..+++.|+++|++.+...+.... ++.|+ ++|++..+.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHK-IIVKWAPPKERSRLLGM 171 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHH-HHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999888876 5433 456788999999999999999988866 77776 445553333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhhhccc-CCCcchhhhhHHHHHHHHHHHHhcccccccCCC-ccchHHHHHH----
Q 019522 163 LSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SLGPVAPFDAAACFLAIGMVIILSSWTENYGDP-SESKDLLTQF---- 236 (340)
Q Consensus 163 ~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---- 236 (340)
. .. +..+|..+++.+.+.+.+.. +|+ ..|.+.++..++..+......+|+++++ ++++++.+..
T Consensus 172 ~----~~----~~~~g~~i~~~l~~~l~~~~~gw~--~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~ 241 (465)
T TIGR00894 172 S----TS----GFQLGTFIFLPISGWLCESWGGWP--MIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSL 241 (465)
T ss_pred H----HH----HHHHHHHHHHHHHHHHHhccCCCC--eehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhc
Confidence 2 22 33355555555555555542 554 6676665555444333322222221111 1111111100
Q ss_pred ---------HHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHH
Q 019522 237 ---------RGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRL 304 (340)
Q Consensus 237 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l 304 (340)
+.++++++++++++.............+. ...|.|.|+++..+.+. +.......++..++.++.|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l 320 (465)
T TIGR00894 242 QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTI-LPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYL 320 (465)
T ss_pred ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 01255678888888776665555555544 57899999987666654 455567788899999999999
Q ss_pred HhhCCCC
Q 019522 305 MARSPPR 311 (340)
Q Consensus 305 ~dr~g~~ 311 (340)
+||.++|
T Consensus 321 ~d~~~~~ 327 (465)
T TIGR00894 321 ADFLKSS 327 (465)
T ss_pred HHHHHHc
Confidence 9987543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-22 Score=184.35 Aligned_cols=266 Identities=13% Similarity=0.111 Sum_probs=178.1
Q ss_pred hhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccc-----------
Q 019522 55 LQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP----------- 122 (340)
Q Consensus 55 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~----------- 122 (340)
+..+.++.+.++++++..+.|++.+...++..+..++.|++.||+||||.+.++.++++++. +.++.+
T Consensus 51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 33566899999999999999999999999899999999999999999999999999999987 555432
Q ss_pred ----------------------------------------hHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchh
Q 019522 123 ----------------------------------------QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFE 159 (340)
Q Consensus 123 ----------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~ 159 (340)
.+..++++|+++|+|.+..++...+ ++.|+ ++|+..
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~-~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS-YIDDFAKSKNSPLY 209 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch-hhhccCCccccHHH
Confidence 2456788999999999999998877 88887 555664
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc------------ccCCC----cchhhhhHHHHHHHHHHHHhccccccc
Q 019522 160 QQWLSITFSKAIFLGNGLVAILSGLFGNLLVD------------SFSLG----PVAPFDAAACFLAIGMVIILSSWTENY 223 (340)
Q Consensus 160 ~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (340)
.++... ...+|..+|+++++.+.....+ ..+++ |+..|++.+++.++..+.. ...|++.
T Consensus 210 ~~i~~~----~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~l 284 (633)
T TIGR00805 210 IGILES----IAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKAL 284 (633)
T ss_pred HHHHHH----HHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCcccc
Confidence 444333 3334444555555544432211 11223 4556766665555444333 2223221
Q ss_pred CCC----c----cc-------h-------HHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCc
Q 019522 224 GDP----S----ES-------K-------DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI 281 (340)
Q Consensus 224 ~~~----~----~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (340)
+++ + ++ + +..++..+..+.+++||.++...+...+.....+. ...|.|.|+++.++.
T Consensus 285 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~-~~~~lP~yl~~~~g~ 363 (633)
T TIGR00805 285 PKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNG-YITFLPKYLENQYGI 363 (633)
T ss_pred CCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 110 0 00 0 00112223456789999998887777666666665 588999999988888
Q ss_pred hhhHH---HHHHHH-HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH
Q 019522 282 PHGFI---FATFML-ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSL 327 (340)
Q Consensus 282 ~~~~~---~~~~~~-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 327 (340)
++... .....+ +.+++.+++|+++||++.+.++.+........+.+
T Consensus 364 s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 364 SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 77533 333333 56789999999999998765455555555444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=164.83 Aligned_cols=254 Identities=16% Similarity=0.106 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHH-HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-h
Q 019522 40 NNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I 117 (340)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~ 117 (340)
+..+...++.........|++|. +.+++|+|+.++|.+.+...+...+.+++.|+++||+|||+++..+..+.+++. .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34444555555555666788665 567899999999999999888888899999999999999999999999999988 7
Q ss_pred hhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC
Q 019522 118 TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS 194 (340)
Q Consensus 118 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~ 194 (340)
+.+.++++.+++.|+++|++.+...+...+ ++.|. ++|++..+......+ +|..+|+.+++.+ . .
T Consensus 93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~----~g~~ig~~l~g~l----~-~-- 160 (400)
T PRK11646 93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTA-LVIKLIRPHQRGRFFSLLMMQDS----AGAVIGALLGSWL----L-Q-- 160 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----H-H--
Confidence 778899999999999999998887777656 55554 566665444444433 3443444444443 3 2
Q ss_pred CCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcccc
Q 019522 195 LGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (340)
++|+..|++.+...++..+......||.++++ ++ ++.+++.++.++||+++............... ...+.|.|
T Consensus 161 ~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~ 234 (400)
T PRK11646 161 YDFRLVCATGAVLFVLAAAFNAWLLPAYKLST-VR----TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQ-VMLMLPIM 234 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcccccc-cc----hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHH-HHHhhhhh
Confidence 34556777666555444333323334322111 11 11223455677888877654443332222222 35678888
Q ss_pred ccCCCCchh--hHHHHHHHHHHHHHHHHHHHHHh-hCCCC
Q 019522 275 SPNDEEIPH--GFIFATFMLASMLGSSLASRLMA-RSPPR 311 (340)
Q Consensus 275 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d-r~g~~ 311 (340)
.++..+.+. +.......+....+....+++.| |++.+
T Consensus 235 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~ 274 (400)
T PRK11646 235 VNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE 274 (400)
T ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 876544332 34444555555555555566555 45444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=168.66 Aligned_cols=258 Identities=15% Similarity=0.073 Sum_probs=160.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHH-HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh
Q 019522 38 FKNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC 116 (340)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 116 (340)
..+.++...++.....+...|++|. +.+++|+|+.++|++.+...+.+.+.+++.|+++||+|||+++..+.+..+++.
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 3444444555555556666788655 456899999999999999988899999999999999999999999998888887
Q ss_pred -hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 019522 117 -ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS 192 (340)
Q Consensus 117 -~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~ 192 (340)
+.++.++++.+++.|.+.|.+.+...+...+ +..|. ++|++..++..... .+|..+|+. ++..+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~----~lg~~igp~----l~~~l~~- 157 (395)
T PRK10054 88 IAIPLVNNVTLVVLFFALINCAYSVFSTVLKA-WFADNLSSTSKTKIFSLNYTML----NIGWTVGPP----LGTLLVM- 157 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHhHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHH-
Confidence 7788899998888898888877776666655 55554 44555444333333 334434444 4444332
Q ss_pred cCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcc
Q 019522 193 FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (340)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (340)
.+ |+.+|...++..++..+......++++++++++++ +. .+.++.+|||+++.......+....... ...+.+
T Consensus 158 ~g--~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 230 (395)
T PRK10054 158 QS--INLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG--SV--WSPSVLLQDKALLWFTCSGFLASFVSGA-FASCIS 230 (395)
T ss_pred hc--cCcHHHHHHHHHHHHHHHHHHHHhccccccccchh--hh--hhhhhhccCceehHHHHHHHHHHHHHHH-hhhhHH
Confidence 34 44667766655555443332223333222111111 11 1224567888887765554443433222 233444
Q ss_pred cccc--CCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 273 ALSP--NDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 273 ~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.|.. ++.+.+. +.................+++.||.++|+
T Consensus 231 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 275 (395)
T PRK10054 231 QYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP 275 (395)
T ss_pred HHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh
Confidence 4432 2223333 23444445555666778899999998884
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=171.52 Aligned_cols=265 Identities=9% Similarity=0.074 Sum_probs=165.3
Q ss_pred CcccccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHH
Q 019522 31 TSSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV 106 (340)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~ 106 (340)
++++...++|.++..++........+ ..+.|.+.+++|.++++.+++.+.......+++++.|+++||+|||++++
T Consensus 9 ~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~ 88 (455)
T TIGR00892 9 GPPPDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVI 88 (455)
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHH
Confidence 33344556777766666655443333 35588999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHh-hhhccchHHHHHH-HHHHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHH
Q 019522 107 TYCLTYILSC-ITKHSPQYKILMI-GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILS 182 (340)
Q Consensus 107 ~~~~~~~~~~-~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~ 182 (340)
.+.++.++++ +++++++++.+++ .|++.|++.+...+.... ++.++ ++|++..+.... +..+|..++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~r~~a~g~~~~--------~~~~g~~~~ 159 (455)
T TIGR00892 89 AGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLT-MLGKYFYRRRPLANGLAMA--------GSPVFLSTL 159 (455)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHH-HHHHHHHhhHHHHHHHHHh--------cccHHHHHH
Confidence 9998888887 7788889888765 579999998876555434 55554 555553333322 223444455
Q ss_pred HhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHh--ccccccc---CCC--c----c-ch-H-----HHHHHHHH-HHHH
Q 019522 183 GLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL--SSWTENY---GDP--S----E-SK-D-----LLTQFRGA-AVAI 243 (340)
Q Consensus 183 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~--~----~-~~-~-----~~~~~~~~-~~~~ 243 (340)
+.+.+.+.+..+|+ +.|++.+++.++..+... ...++++ +++ + + .. + ..++..+. ..+.
T Consensus 160 ~~l~~~l~~~~gwr--~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (455)
T TIGR00892 160 APLNQYLFESFGWR--GSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSL 237 (455)
T ss_pred HHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHH
Confidence 55555555545544 667666555443332221 1111110 000 0 0 00 0 00011110 1246
Q ss_pred hhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhC
Q 019522 244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS 308 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~ 308 (340)
+++|+++.......+.....+. ...+.|.|.++ .+.+. +...+...++.++++++.+++.||.
T Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 238 FTHRGFLVYLSGNVIMFLGFFA-PIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred hcCchHHHHHHHHHHHHHHccc-hHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7788877665544444433333 45677777755 35544 4566667888889999999999984
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=173.63 Aligned_cols=261 Identities=16% Similarity=0.113 Sum_probs=177.5
Q ss_pred chhhHHHHHHHHHHHHHhhh---hHH-HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHH
Q 019522 37 SFKNNYLLVYSLMMAGDWLQ---GPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (340)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (340)
+..++.+.+.++....+..| .|. .+.+++.+|++++..|++.+...+...+.+|+.|+++|||+||+++..|..++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 34455666677777777777 233 78888999999999999999999999999999999999999999999999999
Q ss_pred HHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 019522 113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (340)
Q Consensus 113 ~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 188 (340)
.++. +++++.++|++.++|.+.|+|.+...|.+.+ +++|. ++|++.. +.++.....|+++|.+.+..+++.
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s-~IaD~f~~~~Rs~~~----~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPS-LIADSFPDDKRSRVL----GIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchh-HhhhcCcchhhhHHH----HHhhhhcccccceeEEeeeeeccC
Confidence 9988 8899999999999999999999999999977 88886 6666633 444545556666666666555543
Q ss_pred hhcccCCCcchhhhhHHHHHHHHHHHHhccccccc--CCCccchH-----HHHHHHHHHHHHhhchhHHHHHHHHHHhhh
Q 019522 189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENY--GDPSESKD-----LLTQFRGAAVAIASDEKIALLGAIQSLFEG 261 (340)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (340)
.+| ||+.|...+++.++..++.....+|.+ .+++...+ ......++.+.+.|++.+....+.....+.
T Consensus 184 ----~~~-Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f 258 (493)
T KOG1330|consen 184 ----TFW-WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQF 258 (493)
T ss_pred ----ccc-eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHH
Confidence 444 777888888777777666654443332 11111111 112223344445554444333333333222
Q ss_pred hHHHHHHhhccccccC-----CCCchh-hHHHHHHHHHHHHHHHHHHHHHhhC
Q 019522 262 SMYTFVFLWTPALSPN-----DEEIPH-GFIFATFMLASMLGSSLASRLMARS 308 (340)
Q Consensus 262 ~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~ 308 (340)
..-. ..-|.|.+... +...+. .....+...++.+|.+.+|.++||+
T Consensus 259 v~Gs-~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 259 VIGS-LSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred hccc-cchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence 2222 23444543321 112222 3555777888889999999999984
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-20 Score=168.69 Aligned_cols=178 Identities=16% Similarity=0.135 Sum_probs=123.8
Q ss_pred chhhHHHHHHHHHHHHHhhh----hHHHHHHHHhh--------CCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHH
Q 019522 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY--------GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA 104 (340)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~ 104 (340)
+++.+......+..+.++++ ++..|.+.+++ +.++.+.+++.+...++..+++++.|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34555666666777777777 35567777776 8889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-hhhcc------------chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHH
Q 019522 105 CVTYCLTYILSC-ITKHS------------PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFS 168 (340)
Q Consensus 105 l~~~~~~~~~~~-~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~ 168 (340)
+..+..+.+++. ..++. +++..+++.|+++|++.|...+...+ +++|. ++|++..+..+....
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~i~e~~~~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPM-YIAEIAPAHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHH-HHHhhCChhhhhHHHHHHHHHHH
Confidence 999999988876 54432 23567889999999999999998866 88887 567775554444333
Q ss_pred HHHHhhhhHHHHHHHhhhh----hhhcccCCCcchhhhhHHHHHHHHHHHHhcccccc
Q 019522 169 KAIFLGNGLVAILSGLFGN----LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN 222 (340)
Q Consensus 169 ~~~~~g~~ig~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (340)
+|..+++.++..+.. ...+ .++||++|++.++..++..+.. ...||+
T Consensus 167 ----~G~~~~~~~~~~~~~~~~~~~~~--~~gWr~~f~~~~~~~~~~~~~~-~~l~~s 217 (479)
T PRK10077 167 ----FGQLVVYFVNYFIARSGDASWLN--TDGWRYMFASEAIPALLFLMLL-YFVPET 217 (479)
T ss_pred ----HHHHHHHHHHHHHhccCcccccc--cCChHHHHHHHHHHHHHHHHHH-HcCCCC
Confidence 333333333332221 1112 2456677877666555544433 345554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-20 Score=161.57 Aligned_cols=248 Identities=15% Similarity=0.070 Sum_probs=150.8
Q ss_pred hhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc-----cchHHH-HHHHHHHHHHh-hhhcc---chHH
Q 019522 56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRAC-VTYCLTYILSC-ITKHS---PQYK 125 (340)
Q Consensus 56 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----Grr~~l-~~~~~~~~~~~-~~~~~---~~~~ 125 (340)
..+.+|.+.+|+|+|.+|+|...... +...+ .+++|+++||+ ||||.+ ..+.+..++.. ..++. .+.+
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~~-~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~ 84 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLVG-LPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLP 84 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHHH-HHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 35668899999999999999986553 32333 88999999998 899975 56666666665 55555 4556
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh--cccCCCcchh
Q 019522 126 ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV--DSFSLGPVAP 200 (340)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~--~~~~~~~~~~ 200 (340)
.+....++.+.+.+...+...+ ++.|. ++|++..++.....+ +|..+++.++..+..... +...|.||..
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~r~~~~~~~~~~~~----~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 85 LLAGLAFLIAFFSATQDIALDA-WRLEILSDEELGYGSTIYIVGYR----AGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHhhhchHHHHHHHHHH----HHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 6777777888887777777766 77665 667765554444444 333333333333322211 0112557788
Q ss_pred hhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchh---HHHHHHHHHHhhhhHHHHHHhhccccccC
Q 019522 201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK---IALLGAIQSLFEGSMYTFVFLWTPALSPN 277 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (340)
|.+.++..++..+......+|++++++++++..++.++..++++|+|. .+.......+.....+ ....+.|.|.++
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 238 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDS-AATVLTTLFLLD 238 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 888777666655444222344322211111112223345566677764 5554444444433333 357788888876
Q ss_pred CCCchhhH---HHHHHH-HHHHHHHHHHHHHHhhCCCCc
Q 019522 278 DEEIPHGF---IFATFM-LASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 278 ~~~~~~~~---~~~~~~-~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.|.+... ...... ++.+++.++++++.||+|+|+
T Consensus 239 -~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~ 276 (356)
T TIGR00901 239 -MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY 276 (356)
T ss_pred -cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 5666543 333333 467789999999999999885
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=168.65 Aligned_cols=262 Identities=14% Similarity=0.129 Sum_probs=162.2
Q ss_pred hhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHH
Q 019522 38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI 113 (340)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~ 113 (340)
.++..+....+.......+ ....|.+.+ .|.|+++.+++.+...++..++.++.|+++||+|||+++..+.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 3444444444444444433 223566655 69999999999999999999999999999999999999999988888
Q ss_pred HHh-hhhcc----chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 114 LSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 114 ~~~-~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
++. +.++. +++..+.+.|++.|++.+..++.... .+.|. ++|+...+......+ +|..+++.+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~-~i~~~~~~~~rg~~~~~~~~~~~----~g~~~~~~l~~~~ 177 (438)
T TIGR00712 103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGR-TMVHWWSQSERGTIVSIWNCAHN----IGGGIPPLLVLLG 177 (438)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHH-HHHHhcCcccchhHHHHHHHHHH----hHhHHHHHHHHHH
Confidence 876 54443 46777888999999999888776655 55554 556664444333333 3333333332211
Q ss_pred hhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCC----C-c--cc-------hHHHH--HHHHH-HHHHhhchh
Q 019522 186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD----P-S--ES-------KDLLT--QFRGA-AVAIASDEK 248 (340)
Q Consensus 186 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~--~~-------~~~~~--~~~~~-~~~~~~~~~ 248 (340)
..+..+ ||..|++.++..++..+......+|++++ + + ++ ++..+ +.++. .+..+|+++
T Consensus 178 ---~~~~~~--w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (438)
T TIGR00712 178 ---MAWFND--WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKL 252 (438)
T ss_pred ---HHHhhh--hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCch
Confidence 112234 45667766555444333222222221110 0 0 00 00000 01111 124678888
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 019522 249 IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPR 311 (340)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 311 (340)
++.......+.....+. ...|.|.|.++..|.++ +.......+++++++++.+++.||++++
T Consensus 253 ~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYG-VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 88776655555544454 47789999987666655 3555667788999999999999999654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=164.69 Aligned_cols=261 Identities=14% Similarity=0.099 Sum_probs=163.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccch----HHHHHHHHHHHHHh-hhhc
Q 019522 46 YSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK----RACVTYCLTYILSC-ITKH 120 (340)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr----~~l~~~~~~~~~~~-~~~~ 120 (340)
.+......+...|++|.+.+|+|.|..++|++.+...+...+.+++.|+++||+||| +.+.+..... .. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 333445567778999999999999999999999999999999999999999999994 3332222211 22 3344
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcch
Q 019522 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA 199 (340)
Q Consensus 121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~ 199 (340)
.++++.+++.|++.|++.+...+...+ +..+. ++|++..+......+ +|..+++.+++.+.++.+|+ .
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a-~~~~~~~~~~~a~~~~~~~~~--------lg~~igp~lgg~l~~~~g~~--~ 159 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDA-LANTWQKQIGLDYGKVRLWGS--------IAFVIGSALTGKLVSWFGEQ--A 159 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHH-HHHHHHhhccCCcchHHHHHH--------HHHHHHHHHHHHHHHHcChh--H
Confidence 688999999999999998888787655 55554 445554444333332 44455555555555545554 6
Q ss_pred hhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCC
Q 019522 200 PFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279 (340)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (340)
.|+..+...++..+.. ...||++++++++++ .++..++.++++|+|+++.......+....... ...+.|.|.++ .
T Consensus 160 ~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~-~ 235 (382)
T PRK11128 160 ILWILTAGVASMLLGQ-LLRPTIMPQGESRQQ-ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA-YYGFSAIYWQA-A 235 (382)
T ss_pred HHHHHHHHHHHHHHHH-HccCCCCCccccccc-cccccchHHHHHcChhHHHHHHHHHHHHHHhHh-HHHHHHHHHHH-C
Confidence 6766555444333333 233333222111111 111123456788999888765555554433332 35566777654 4
Q ss_pred Cchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 019522 280 EIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV 325 (340)
Q Consensus 280 ~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 325 (340)
|.+. +.......++.++..++.+++.||+++|+ .+..+....++
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~l~~~~~~~~~ 282 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD--LLLLSAICGVV 282 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHH
Confidence 4444 45555666778888899999999999884 44444444433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=164.09 Aligned_cols=246 Identities=19% Similarity=0.249 Sum_probs=148.0
Q ss_pred HHHHHHHhhC--CChhhhHHHHH-----HHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHH-----
Q 019522 59 YVYYLYSTYG--FGKGEIGQLFI-----AGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK----- 125 (340)
Q Consensus 59 ~~~~~~~~~g--~s~~~~g~~~~-----~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~----- 125 (340)
..+.+.+++. .++++.+...+ ..++...+++++.|+++||+|||+++..+.++..++. ++++++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (394)
T TIGR00883 15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIW 94 (394)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHH
Confidence 3555566543 44566665433 3344445678899999999999999999999999988 778888765
Q ss_pred ---HHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc--ccCCCc
Q 019522 126 ---ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD--SFSLGP 197 (340)
Q Consensus 126 ---~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~--~~~~~~ 197 (340)
.+++.|+++|++.+...+.... ++.|. ++|++..+..... ..+|..+++.++..+...+.+ ...++|
T Consensus 95 ~~~~~~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~----~~~G~~i~~~~~~~~~~~~~~~~~~~~~w 169 (394)
T TIGR00883 95 APILLLLARLIQGFSLGGEWGGAAL-YLAEYAPPGKRGFYGSFQQVG----APVGLLLAALTVLLLSYLLGDDALLEWGW 169 (394)
T ss_pred HHHHHHHHHHHHHhhccccccccHH-HhhhcCCcccchHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCHHHhhccch
Confidence 4788999999999988887766 77775 5566644443333 333443444443333221111 123567
Q ss_pred chhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchh--HHHHHHHHHHhhhhHHHHHHhhccccc
Q 019522 198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK--IALLGAIQSLFEGSMYTFVFLWTPALS 275 (340)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (340)
+.++.+.+...++..... ...+|+++.++++++ .++.+++.++.+++++ ++..... .+.....+.....+.|.|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 246 (394)
T TIGR00883 170 RIPFLVSAVLVLIGLYLR-RNLEETPVFEKAQEK-HKKKRGPIRETLTKHRKPFLLGLGL-VIATTTTFYLITTYLPTYL 246 (394)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHhc-cccccCCHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 777877666555444333 333433211111000 0111112334445544 4443333 3333334444577888888
Q ss_pred cCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 276 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
++..+.+. +.......++..++.++.+++.||+++|+
T Consensus 247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 286 (394)
T TIGR00883 247 TQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP 286 (394)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 66655554 34556667788899999999999999885
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=167.89 Aligned_cols=243 Identities=15% Similarity=0.162 Sum_probs=145.3
Q ss_pred hHHHHHHHHhhCCC--------hhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc---cchH
Q 019522 57 GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQY 124 (340)
Q Consensus 57 ~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~---~~~~ 124 (340)
.+..|.+.++++.+ ..+.+++.+...++..+++++.|+++||+|||+++..+.++..++. ++.+ ..++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV 127 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 35567777777766 8899999999999999999999999999999999999999998877 5533 3455
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh---hhhhcccCCCcc
Q 019522 125 KILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG---NLLVDSFSLGPV 198 (340)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~---~~l~~~~~~~~~ 198 (340)
+.+++.|++.|++.+...+.... ++.|. ++|++..+......+ +|..+++.++ ....+.. +||
T Consensus 128 ~~~~~~r~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~--------~G~~~~~~~~~~~~~~~~~~--~w~ 196 (481)
T TIGR00879 128 EMLIVGRVLLGIGVGIASALVPM-YLSEIAPKALRGALTSLYQLAIT--------FGILVAYGFGSGKVSLNNTL--GWR 196 (481)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHH-HHHccCChhhhhhhhhHHHHHHH--------HHHHHHHHHHHHhhcCCCCc--cHH
Confidence 68999999999999999887756 77776 556664444433333 4444444444 3322333 455
Q ss_pred hhhhhHHHHHHHHHHHHhcccccccC------CCccchHHHHH-----------HH-----------------HHHHHHh
Q 019522 199 APFDAAACFLAIGMVIILSSWTENYG------DPSESKDLLTQ-----------FR-----------------GAAVAIA 244 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------~~-----------------~~~~~~~ 244 (340)
+.|++.+...++..... ...+|++. +.++.++..++ .+ +.+...+
T Consensus 197 ~~f~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (481)
T TIGR00879 197 IPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLF 275 (481)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 66766554444433333 33343211 10000000000 00 0001112
Q ss_pred hc-----hhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 245 SD-----EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 245 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+. ++.+.......+...........+.|.+.++ .|.+. +.......++.+++.++.+++.||+++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 350 (481)
T TIGR00879 276 SSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP 350 (481)
T ss_pred hcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 11 2222222222222222222234455555433 24333 35556667888999999999999999885
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=161.70 Aligned_cols=262 Identities=15% Similarity=0.077 Sum_probs=153.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh
Q 019522 38 FKNNYLLVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC 116 (340)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 116 (340)
.-|......++.....+...|++|.+. +++|.++.+.|.+.+...+...+.+++.|+++||+|||+.+..+....+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF 82 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 344555555555665666678877665 4689999999999999999999999999999999999999988776665533
Q ss_pred -h---hhccc-----hHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 117 -I---TKHSP-----QYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 117 -~---~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
. ..+.+ ......+.+++.|++.+...+.... +..|. ++++...+..... .. +|..+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~----~~----~g~~~g~~~~ 153 (396)
T TIGR00882 83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEA-YIEKVSRNSNFEYGKARMF----GC----VGWALCASIA 153 (396)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHH-HHHHhhhhcccccchhhhh----cc----cHHHHHHHHH
Confidence 1 12222 2234566788888888877777655 55543 3332222222222 23 3444444444
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccch----HHHHHHHHHHHHHhhchhHHHHHHHHHHhhhh
Q 019522 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGS 262 (340)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (340)
+.+.+ ++|+.+|++.+.+.++..+......+++++++++++ +..++..++..+.+|||+++.......... .
T Consensus 154 g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~ 229 (396)
T TIGR00882 154 GILFS---IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVA-C 229 (396)
T ss_pred hhhhc---cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHH-H
Confidence 43332 345577877766555544433222222211110000 000111123456788888776544433332 2
Q ss_pred HHHHHHhhccccccCCC---Cch---hhHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 263 MYTFVFLWTPALSPNDE---EIP---HGFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 263 ~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.+.....+.+.|.++.. +.+ .+...+...+...++....+++.||+++|+
T Consensus 230 ~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~ 285 (396)
T TIGR00882 230 VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN 285 (396)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 23323344555543322 222 245556667778888899999999999995
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-19 Score=157.49 Aligned_cols=249 Identities=16% Similarity=0.091 Sum_probs=154.9
Q ss_pred HHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc-----cchH-HHHHHHHHHHHHh-hhhcc-
Q 019522 50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKR-ACVTYCLTYILSC-ITKHS- 121 (340)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----Grr~-~l~~~~~~~~~~~-~~~~~- 121 (340)
....++..+.+|.+.++.|+|.+|+|++...... .+..+++|+++||+ |||| .+..+.+..+++. ..++.
T Consensus 12 ~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~ 89 (402)
T PRK11902 12 GLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP 89 (402)
T ss_pred hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 3334455677899999999999999998666664 58889999999999 8876 6777777777666 54554
Q ss_pred --chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCC
Q 019522 122 --PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG 196 (340)
Q Consensus 122 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~ 196 (340)
++++.+++..++.+...+...+...+ ++.|. ++|++..+.....++ +|.++++.+...+.+.. ++
T Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~r~~~~~~~~~g~~--------~g~i~g~~l~~~l~~~~-~g 159 (402)
T PRK11902 90 PHAALWPLAGLAVLVAFLSASQDIVFDA-YSTDVLHPEERGAGAAVKVLGYR--------LAMLVSGGLALWLADRV-LG 159 (402)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChhhhhHHHHHHHHHHH--------HHHHHHhHHHHHHHhcc-cC
Confidence 45777777878888888887777766 77776 446664444443333 44444444444444322 35
Q ss_pred cchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcccccc
Q 019522 197 PVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP 276 (340)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (340)
|+..|++.++..++..... ...+|++.+++++++..++..++.++++|||.++.......+........ ..+.+.+..
T Consensus 160 w~~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~~l~ 237 (402)
T PRK11902 160 WGNTYLLMAGLMLAGALTT-LWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA-GSLSTTFLI 237 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH-HHHHHHHHH
Confidence 6677877666555444433 33444332222211212233455667889988876555444444332221 223344455
Q ss_pred CCCCchhh---HHHHHH-HHHHHHHHHHHHHHHhhCCCCc
Q 019522 277 NDEEIPHG---FIFATF-MLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 277 ~~~~~~~~---~~~~~~-~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
++.|.++. ...... ..+.+++.++.+++.||+++|+
T Consensus 238 ~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~ 277 (402)
T PRK11902 238 RGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR 277 (402)
T ss_pred HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55566554 332232 3457889999999999999885
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-19 Score=149.20 Aligned_cols=267 Identities=19% Similarity=0.207 Sum_probs=187.8
Q ss_pred HhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh---hccchHHHHH
Q 019522 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILM 128 (340)
Q Consensus 53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~---~~~~~~~~l~ 128 (340)
+....+.+|.+.+.++++..|.+++....+.+..+.+.+.|++.||+|+|+-++.++.++++++ +. +...++..++
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL 108 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFL 108 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3444688999999999999999999999999999999999999999999999999999999988 54 3466888999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc-----------cC
Q 019522 129 IGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS-----------FS 194 (340)
Q Consensus 129 ~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~-----------~~ 194 (340)
++-++.|.|.+...+..++ +++.. ++..++....+.+++ +|..++|.+++.++.+ ..
T Consensus 109 ~~lFila~Gi~~LetaaNp-~v~~lg~~~~a~~rlnl~q~fn~--------lGa~~gp~~g~~lils~~~~~~~~~~~~~ 179 (422)
T COG0738 109 VALFILASGIGLLETAANP-YVTLLGKPESAAFRLNLAQAFNG--------LGAILGPLLGSSLILSGVALTMSAAQILA 179 (422)
T ss_pred HHHHHHHhhhHHHHhccch-HHHHhCCchhHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence 9999999999999999988 86654 445677777777777 3444444444433321 00
Q ss_pred C------CcchhhhhHHHHHHHHHHHHh-cccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHH
Q 019522 195 L------GPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFV 267 (340)
Q Consensus 195 ~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (340)
| .++.+|...+....+..+... .+.|+.++.+++..+..+ ....+++|+|+.....+..++..+.... .
T Consensus 180 ~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~---~~~~~l~~~~~~~~gvl~~FlYVG~Eva-~ 255 (422)
T COG0738 180 IKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGS---AGLSSLFQNKHLRLGVLAIFLYVGAEVA-I 255 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccccc---chHHHHHhChHHHHHHHHHHHHHhHHHH-H
Confidence 1 145667666555544444442 344443332222111111 1345678999998877776665555555 5
Q ss_pred HhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 019522 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334 (340)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (340)
.+|++.|..+..|.+. ....+.+..+.++|++++.++.+|+... +.+......+.+.+....+.+
T Consensus 256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--k~Laf~a~~~ill~~~~~l~~ 323 (422)
T COG0738 256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--KYLAFYALIAILLLLAVALIG 323 (422)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 8899999887666554 3556777888999999999999999777 455555545555444444433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-20 Score=168.37 Aligned_cols=252 Identities=14% Similarity=0.081 Sum_probs=158.7
Q ss_pred HHHHHHHHhhCCC---hhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHH
Q 019522 58 PYVYYLYSTYGFG---KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (340)
Q Consensus 58 ~~~~~~~~~~g~s---~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l 133 (340)
+..|.+.+|+|++ +.+.++..+...++..+++++.|+++||+|||+++..+.++.+++. +.++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4577888999999 8999999999999999999999999999999999999999998887 77899999999999999
Q ss_pred HHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHH
Q 019522 134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 210 (340)
.|++.+...+.... ++.|. ++|+...+.. . .+..+|.++++.++..+. + ||..+++.++..++
T Consensus 190 ~G~~~~~~~~~~~~-~~~e~~~~~~r~~~~~~~----~----~~~~~g~~~~~~~~~~~~---~--wr~~~~~~~i~~~~ 255 (505)
T TIGR00898 190 VGMGIGGIWVQAVV-LNTEFLPKKQRAIVGTLI----Q----VFFSLGLVLLPLVAYFIP---D--WRWLQLAVSLPTFL 255 (505)
T ss_pred HHhhccchHHHHHH-HhheecChhhhHHHHHHH----H----HHHHHHHHHHHHHHHHhh---H--HHHHHHHHHHHHHH
Confidence 99999998888766 88886 4455533322 2 233344455554443322 1 55667666555554
Q ss_pred HHHHHhccccccc------CCCccchHHH---------------------HHH--H---HHHHHHhhchhHHHHHHHHHH
Q 019522 211 GMVIILSSWTENY------GDPSESKDLL---------------------TQF--R---GAAVAIASDEKIALLGAIQSL 258 (340)
Q Consensus 211 ~~~~~~~~~~~~~------~~~~~~~~~~---------------------~~~--~---~~~~~~~~~~~~~~~~~~~~~ 258 (340)
..+.. ...||+. ++.+++.+.. ++. . ...++++|+|+++.......+
T Consensus 256 ~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (505)
T TIGR00898 256 FFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMM 334 (505)
T ss_pred HHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHH
Confidence 44443 3344432 1111110000 000 0 123456677776655444333
Q ss_pred hhhhHHHHHHhhccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHH
Q 019522 259 FEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL 328 (340)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 328 (340)
....... .....+.+. +..+.+.........+..+++.++.+++.||+|||+ .+.....+.++++.
T Consensus 335 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~--~~~~~~~~~~~~~l 400 (505)
T TIGR00898 335 LWFTTAF-SYYGLVLDL-GNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRY--TMAASLLLAGVALL 400 (505)
T ss_pred HHHHHHH-HHHHHhccc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHH
Confidence 2222111 111112222 223333444445667788899999999999999984 44444444444433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=158.23 Aligned_cols=247 Identities=16% Similarity=0.136 Sum_probs=152.7
Q ss_pred HHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc-----cchHH-HHHHHHHHHHHh-hhhcc---
Q 019522 52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRA-CVTYCLTYILSC-ITKHS--- 121 (340)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----Grr~~-l~~~~~~~~~~~-~~~~~--- 121 (340)
......+.+|.+.++.|.|.+++|........ .+..+++|+++||+ ||||. +..+.+..+++. .+++.
T Consensus 27 ~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~ 104 (491)
T PRK11010 27 PLALTSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPG 104 (491)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 33444677899999999999999986333332 25778899999999 99986 556666666665 55553
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcc
Q 019522 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (340)
Q Consensus 122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~ 198 (340)
++++.+.+.+++.+++.+...+...+ +..|. ++|++..+.....+ .+|.++++.+...+.++ .++||
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a-~~~~~~~~~~rg~~~~i~~~g~--------~lG~llg~~l~~~l~~~-~~GWr 174 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDA-WKTDVLPAEERGAGAAISVLGY--------RLAMLVSGGLALWLADR-YLGWQ 174 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHhc-ccCHH
Confidence 47888888999999998888777766 77776 55666444333333 34445555444444441 14566
Q ss_pred hhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCC
Q 019522 199 APFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND 278 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (340)
..|++.++..++..+... ..+|++++++++++..++..++.++.+++++.+.......+...... ....+.+.|+.+.
T Consensus 175 ~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~-~~~~~~~~~l~~~ 252 (491)
T PRK11010 175 GMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDA-FAMSLTTTFLIRG 252 (491)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 788877766655544432 34443222111111111122344556666666654444333333332 2356677776555
Q ss_pred CCchhh---HHH-HHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 279 EEIPHG---FIF-ATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 279 ~~~~~~---~~~-~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.|.+.. ... ....++.+++.++.|++.||+++|+
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~ 290 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR 290 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 666654 333 2334678899999999999999874
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=159.78 Aligned_cols=235 Identities=22% Similarity=0.190 Sum_probs=171.0
Q ss_pred HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc--chHHHHHHHHHHHHHHhhhh
Q 019522 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYKILMIGRILGGIATSLL 141 (340)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~--~~~~~l~~~r~l~G~~~~~~ 141 (340)
.++++|..|.+++++..+.+..+...+.|+++||+|.|+++..+.++.++++ +...+ .+++.+++.|+++|++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 4688999999999999999999999999999999999999999999999988 76654 34557899999999999999
Q ss_pred hhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcc
Q 019522 142 FSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSS 218 (340)
Q Consensus 142 ~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (340)
+|.... +.+++ ++|++..+...... .+|.+++.++++.+.+. .++|+..|++.+.+.++..++....
T Consensus 146 ~pa~~~-i~~~W~P~~Ers~~~ail~~g~--------q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 146 FPAIGS-ILAKWAPPNERSTFIAILTAGS--------QLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred Hhhhhc-eeeeECCHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999877 77776 66777444444333 35556655566666654 3445577887776665544443322
Q ss_pred c---ccccCCCccchH--HH-----HH----HHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh-
Q 019522 219 W---TENYGDPSESKD--LL-----TQ----FRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH- 283 (340)
Q Consensus 219 ~---~~~~~~~~~~~~--~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 283 (340)
. |++++...+++. .. ++ .+.+++++++++.+|...+.........+. ...|.|.|+++.++.+.
T Consensus 216 ~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~-l~~y~PtY~~~VL~f~v~ 294 (466)
T KOG2532|consen 216 YSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYL-LLTYLPTYLKEVLGFDVR 294 (466)
T ss_pred hcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhCCChh
Confidence 2 322221111110 00 00 112578899999999986666555555555 69999999998887765
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 019522 284 --GFIFATFMLASMLGSSLASRLMARSPP 310 (340)
Q Consensus 284 --~~~~~~~~~~~~~~~~~~g~l~dr~g~ 310 (340)
+...++..+.+.+..+++|.++||..+
T Consensus 295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 295 ETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577788899999999999999999866
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=152.71 Aligned_cols=238 Identities=24% Similarity=0.312 Sum_probs=165.3
Q ss_pred HhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHH
Q 019522 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR 131 (340)
Q Consensus 53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r 131 (340)
.....+..|.+.+++|.++.+.+.+.+...+...+.+++.|+++||+|||+.+..+..+..++. ...+.++++.+.+.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (352)
T cd06174 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGR 94 (352)
T ss_pred hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3344677889999999999999999999999999999999999999999999999999999988 777789999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHH
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (340)
++.|++.+...+...+ ++.|. ++|++..+......+ +|..+++.+...+.+..+|+ ..+.+.+...
T Consensus 95 ~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 163 (352)
T cd06174 95 FLLGLGGGALYPAAAA-LIAEWFPPKERGRALGLFSAGFG--------LGALLGPLLGGLLAESLGWR--WLFLILAILG 163 (352)
T ss_pred HHHHcccccccHhHHH-HHHHhCCccchhhhhhHHHHHHH--------HHHHHHHHHHHHHHHHhhHH--HHHHHHHHHH
Confidence 9999999998888766 77765 456664444433333 44444444444444444444 5566655555
Q ss_pred HHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hH
Q 019522 209 AIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF 285 (340)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 285 (340)
.+...... ..+ |+++.......+.... +.....+.|.+.++..+.+. +.
T Consensus 164 ~~~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T cd06174 164 LLLALLLL-FLL--------------------------RLLLLLALAFFLLSFG-YYGLLTYLPLYLQEVLGLSAAEAGL 215 (352)
T ss_pred HHHHHHHH-HHH--------------------------HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 44444331 111 2334433333333333 33346777877776544444 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHH
Q 019522 286 IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP 330 (340)
Q Consensus 286 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 330 (340)
......++..++.++.+++.||+++|+ +.+........++....
T Consensus 216 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 216 LLSLFGLGGILGALLGGLLSDRLGRRR-LLLLIGLLLAALGLLLL 259 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHH
Confidence 667778889999999999999999884 15555555444444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-19 Score=157.83 Aligned_cols=261 Identities=15% Similarity=0.089 Sum_probs=138.0
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-
Q 019522 39 KNNYLLVYSLMMAGDWLQGPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC- 116 (340)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~- 116 (340)
.|......++.....+...|++|.+.+ ++|+|+.++|.+.+...+...+.+++.|+++||+|||+++..+..+.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 91 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG 91 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 344444444444444555788666655 599999999999999999999999999999999999999988766655433
Q ss_pred hh-h--ccchH-----HHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 019522 117 IT-K--HSPQY-----KILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (340)
Q Consensus 117 ~~-~--~~~~~-----~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 187 (340)
.. . ..+.. ....+.++..|.+.....+.... +..+. ++++...+..... .. +|..+++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~----~~----~g~~i~~~~~g 162 (420)
T PRK09528 92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEA-YIERVSRRSGFEYGRARMW----GS----LGWALCAFIAG 162 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhh-HHHHHHhhccccchhhHHh----hh----HHHHHHHHHHH
Confidence 11 1 11111 11122233333333332233322 22222 3333322222222 22 34444444444
Q ss_pred hhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCC---ccch-HHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhH
Q 019522 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---SESK-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM 263 (340)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (340)
.+.+ .+ |+.+|+..++..++.........+++++++ ++++ +..+...++..+.+|||+++.......... ..
T Consensus 163 ~l~~-~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~-~~ 238 (420)
T PRK09528 163 ILFN-IN--PQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVA-CF 238 (420)
T ss_pred HHHh-cC--chHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHH-HH
Confidence 4433 23 446677666555544444432222222111 0000 001111123345678887665443322222 22
Q ss_pred HHHHHhhccccccCC---CCch---hhHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 264 YTFVFLWTPALSPND---EEIP---HGFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 264 ~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+.....+.|.|..+. .+.+ .+...+...+...++.++.|++.||+++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 293 (420)
T PRK09528 239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN 293 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 222233455544321 1222 245666677788899999999999999985
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-18 Score=152.19 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=158.1
Q ss_pred hhhhHH-HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccc----ccchH-HHHHHHHHHHHHh-hhhccch---
Q 019522 54 WLQGPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKR-ACVTYCLTYILSC-ITKHSPQ--- 123 (340)
Q Consensus 54 ~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Grr~-~l~~~~~~~~~~~-~~~~~~~--- 123 (340)
....++ .+.+.+++|+++.++|.+.+...+...+..|+.|+++|| +|||| .+..+....+++. ++...++
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~ 95 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSA 95 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCc
Confidence 333455 555666899999999999999999999999999999997 67755 5666777777666 5544443
Q ss_pred ---HHHHHHHHHHHHHHhhhhhhhhhhhhhcc----ccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc-ccCC
Q 019522 124 ---YKILMIGRILGGIATSLLFSAFESWLVAE----HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSL 195 (340)
Q Consensus 124 ---~~~l~~~r~l~G~~~~~~~~~~~~~~i~~----~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~-~~~~ 195 (340)
...+++.+++.+++.+...+...+ +..| .++|++..++...... +|..+++.+.+.+...+.+ ...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~R~~~~~~~~~~~~----~g~~l~~~~~~~l~~~~~~~~~~~ 170 (437)
T TIGR00792 96 TGKLVYAYITYILLGLFYSFVNIPYWS-LVPAITLDPRERESLSTFRRFGAT----LGGLLVAVIVLPLVSYFGGGDDKF 170 (437)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccHhh-CcccccCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCcccc
Confidence 456677788888887776555444 4444 2566664444433333 3333333333333222211 1124
Q ss_pred CcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccc
Q 019522 196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS 275 (340)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (340)
+|+..+.+.+++.++.........+|++++++++++...+.++..+.+++||+++.......+.....+. ...+.+.|.
T Consensus 171 g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 249 (437)
T TIGR00792 171 GWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNI-KNGVQVYYF 249 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HcchhheeE
Confidence 5667777777666655555444555543221111111122344566788899888765555554444333 344555565
Q ss_pred cCCCCchh--hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 019522 276 PNDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVS 323 (340)
Q Consensus 276 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 323 (340)
+...+.+. +.......++.+++.++.+++.||+|+|+ ....+....
T Consensus 250 ~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~--~~~~~~~~~ 297 (437)
T TIGR00792 250 TYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI--LFAGGILLM 297 (437)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHH
Confidence 55444222 34445567888999999999999999884 444443333
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-18 Score=150.88 Aligned_cols=261 Identities=11% Similarity=-0.017 Sum_probs=156.8
Q ss_pred HHHHHHHHHhhhhHH-HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccc-hHHHHHHHHHHHHHh-hhhcc
Q 019522 45 VYSLMMAGDWLQGPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACVTYCLTYILSC-ITKHS 121 (340)
Q Consensus 45 ~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~-~~~~~ 121 (340)
..++.....+...|+ .+.+.+++|++..|+|++.+...++..+++++.|.++||+|| |+++..+.++.++.. +..+.
T Consensus 10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~ 89 (418)
T TIGR00889 10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV 89 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555 556667899999999999999999999999999999999965 778888888777766 67788
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhh---hc-------cccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 019522 122 PQYKILMIGRILGGIATSLLFSAFESWL---VA-------EHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD 191 (340)
Q Consensus 122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~---i~-------~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~ 191 (340)
++++.+.+.|++.|++.+...+..++.. .. +..+|.+. .. .+|..+|+.+++.+. .
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~------~G----~lG~~ig~~l~g~l~----~ 155 (418)
T TIGR00889 90 TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRV------MG----TIGFIAAMWAVSLLD----I 155 (418)
T ss_pred cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeee------eh----hHHHHHHHHHHHHhc----c
Confidence 8999999999999998777766655521 11 11122221 11 134444444444331 1
Q ss_pred ccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccc-hHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhh
Q 019522 192 SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES-KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLW 270 (340)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (340)
...| .+|++.++..++..+.. ...||++++++++ .+..+..+...+..+|+|+++.+.....+..... .....+
T Consensus 156 --~~~~-~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~-~~~~~~ 230 (418)
T TIGR00889 156 --ELSN-IQLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPL-QITNIF 230 (418)
T ss_pred --cchh-HHHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHH-HHHHHh
Confidence 1223 24555555444444433 3455543222111 1111111122345788888766555444433322 223455
Q ss_pred ccccccCCC-C---------chhhHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 019522 271 TPALSPNDE-E---------IPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS 326 (340)
Q Consensus 271 ~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 326 (340)
.|.|.++.. + ...+...+...+..+++.+..+++.||+|+|+ .+..+.....+.
T Consensus 231 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~--~l~~~~~~~~v~ 294 (418)
T TIGR00889 231 GNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK--VMLLSLVAWALR 294 (418)
T ss_pred HHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHH
Confidence 566554421 1 11256667778889999999999999999984 444444444433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-17 Score=144.27 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=111.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhh-hHH-HHHHHHhhCCChhh-hHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHH
Q 019522 35 FNSFKNNYLLVYSLMMAGDWLQ-GPY-VYYLYSTYGFGKGE-IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (340)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (340)
++.+++..+.+|....+.+.=. .|+ .|.+.+|+|+|++| .|.+.+..+.+..+..++.|+++||+|.|+++..+.+.
T Consensus 22 ~~~W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~ 101 (511)
T TIGR00806 22 LKSWRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALS 101 (511)
T ss_pred hcchhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 3445555444555443322211 355 88899999999999 89999999999999999999999999999999999999
Q ss_pred HHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 019522 112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (340)
Q Consensus 112 ~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 187 (340)
+++.. +.++++++..+.+.|++.|++.|... .... ++..+ ++|++..+.. ..+..+ |..+++++++
T Consensus 102 Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~s-yI~~WfP~kER~ratsi~----~sg~~v----G~~Ia~~L~q 171 (511)
T TIGR00806 102 FVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSS-YIFSLVPPSRYQRAAAYS----RAAVLL----GVFLSSVLGQ 171 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHCCHHHHHHHHHHH----HHHHHH----HHHHHHHHHH
Confidence 99988 88899999999999999999999998 6555 77765 6666644333 333334 4444444444
Q ss_pred hhhcccCCCc
Q 019522 188 LLVDSFSLGP 197 (340)
Q Consensus 188 ~l~~~~~~~~ 197 (340)
.+ ...+|++
T Consensus 172 ll-~s~gWr~ 180 (511)
T TIGR00806 172 LL-VTLGWIS 180 (511)
T ss_pred HH-HhcCchh
Confidence 42 2356664
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=167.57 Aligned_cols=249 Identities=13% Similarity=-0.018 Sum_probs=152.8
Q ss_pred hHHHHHHHHhhCCChhh--hHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh----hhhccchHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGE--IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHSPQYKILMIG 130 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~--~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----~~~~~~~~~~l~~~ 130 (340)
....+.+..+++.+... .+++.+...+...++++++|+++||+|||+++..+.++..+.. +....++++.+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV 109 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34456666677765444 5788888888888999999999999999999998887665543 23346789999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh--cc--cCCCcchhhhh
Q 019522 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV--DS--FSLGPVAPFDA 203 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~--~~--~~~~~~~~~~~ 203 (340)
|+++|++.+...+...+ ++.|. ++|++..++.....+ +|..+|+.+++.+..... +. .+|.+...+..
T Consensus 110 r~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~----ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 184 (1146)
T PRK08633 110 TFLLGAQSAIYSPAKYG-IIPELVGKENLSRANGLLEAFTI----VAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV 184 (1146)
T ss_pred HHHHHHHHHhhchHHHh-hhHHhcCcccchhhhhHHHHHHH----HHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence 99999999999888766 77775 667776555555444 333344444443332200 00 11221122222
Q ss_pred HHHHHHHHHHHHhcccccccCCCcc-----chHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCC
Q 019522 204 AACFLAIGMVIILSSWTENYGDPSE-----SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND 278 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (340)
.....++..++. ...++.+...++ .....+...+..+.+++++.++...+...+.....+. ...+.|.|..+.
T Consensus 185 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 262 (1146)
T PRK08633 185 LLAVAVLGLIFA-YRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQL-AQANFPAYAKEV 262 (1146)
T ss_pred HHHHHHHHHHHH-hcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHH
Confidence 222222222222 233433221111 1111223344566677888877665554444443333 466778887765
Q ss_pred CCchh----hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 279 EEIPH----GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 279 ~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.+.+. +.......++.+++.++.+++.||.++++
T Consensus 263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~ 300 (1146)
T PRK08633 263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG 300 (1146)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc
Confidence 55543 45556677888999999999999998774
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-17 Score=146.64 Aligned_cols=278 Identities=18% Similarity=0.216 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh-
Q 019522 41 NYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT- 118 (340)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~- 118 (340)
.+.....+..+.+++....++.+..+..-|+..++++.....+...+.++++|.++||++|||+++.+.++.++.. ..
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~ 93 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLA 93 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence 3445566677778888666677777777889999999999999999999999999999999999999988776543 22
Q ss_pred --hc--cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC
Q 019522 119 --KH--SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS 194 (340)
Q Consensus 119 --~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~ 194 (340)
.. ..+.+.+++.-++.|++.+...|..++ ++.|.-+|....+ ..+..+...++...+|+.+++.+... .|
T Consensus 94 ~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A-~ip~lV~~~~L~~-A~al~s~~~niar~iGPalgG~Lva~----~G 167 (524)
T PF05977_consen 94 VLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQA-IIPELVPKEDLPA-ANALNSISFNIARIIGPALGGILVAF----FG 167 (524)
T ss_pred HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccHhhHHH-HHHHHHHHHHHHHhccchHHHHHHHH----HH
Confidence 22 346788899999999999999998877 7777633322211 22334444455555566665555443 22
Q ss_pred CCcchhhhhHHHHHHHHHHHHhcccccc-cCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccc
Q 019522 195 LGPVAPFDAAACFLAIGMVIILSSWTEN-YGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA 273 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (340)
....|.+.++..++....+ ..++++ ++++.++++..+..++..+.+.++|..........++...... ....+|.
T Consensus 168 --~~~~f~inalsfl~~i~~l-~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a-~~aLlPl 243 (524)
T PF05977_consen 168 --AAAAFLINALSFLISILAL-LRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASA-VWALLPL 243 (524)
T ss_pred --HHHHHHHHHHHHHHHHHHH-HHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhH-HHHhhhH
Confidence 2245665555444443333 233322 2222233344556667777777777766544433333333222 3456788
Q ss_pred cccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHH
Q 019522 274 LSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP 330 (340)
Q Consensus 274 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 330 (340)
+.++..+.++ |.+.+..++|+++|.++.+++.+|+++++ .+..+....++++...
T Consensus 244 ~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~--lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 244 FARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR--LVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch--hhHHHHHHHHHHHHHH
Confidence 8877666555 56778889999999999999999988763 4444444444444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=152.90 Aligned_cols=240 Identities=14% Similarity=0.097 Sum_probs=173.4
Q ss_pred HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhh
Q 019522 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL 141 (340)
Q Consensus 63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~ 141 (340)
+.+|.+....+.+.+.+..+++..++..++|.+.||++-.+.+....+.+++-. +....+|++.+++.|++.|+.++..
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~ 151 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGG 151 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 447888999999999999999999999999999999998888888888887755 6667999999999999999999999
Q ss_pred hhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcc
Q 019522 142 FSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSS 218 (340)
Q Consensus 142 ~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (340)
+|.... +++.+ ++|+.+.++..+..+ +|+.+|++++..+-..-....-.+||+.|.+.+++.+...+..+..
T Consensus 152 wP~~~~-~lg~wy~~~e~g~r~~~~~a~~~----~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 152 WPGVVA-ILGNWYGKSERGLRMGIWYASAS----LGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFF 226 (495)
T ss_pred chHHHH-HHHhhcChhhhhhhHHHHHHhcc----hhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEE
Confidence 999877 88776 667776655555544 3333333443332110000111345577888888777777766555
Q ss_pred cccccCCC---ccch-----HHHH----------HHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCC
Q 019522 219 WTENYGDP---SESK-----DLLT----------QFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE 280 (340)
Q Consensus 219 ~~~~~~~~---~~~~-----~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (340)
+|+++.+. ++++ +..+ ......++.+++|++|...+...+.....+.+ ..|+|.++++..+
T Consensus 227 lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~-~~~lpl~l~~~~~ 305 (495)
T KOG2533|consen 227 LPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGF-SYWLPLYLKSNGG 305 (495)
T ss_pred ecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccH-HHHHHHHHHcCCC
Confidence 55443311 1111 0000 11234567899999999999888888877774 8999999988544
Q ss_pred chh---hHHHHHHHHHHHHHHHHHHHHHhhC
Q 019522 281 IPH---GFIFATFMLASMLGSSLASRLMARS 308 (340)
Q Consensus 281 ~~~---~~~~~~~~~~~~~~~~~~g~l~dr~ 308 (340)
.+. ..+.....++++++.+++|.++||.
T Consensus 306 ~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 306 YSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred cChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 543 4566778899999999999999995
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=166.39 Aligned_cols=257 Identities=15% Similarity=0.077 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHhhhh-HH----HHHHHHhhCCCh-hhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHH---HH
Q 019522 42 YLLVYSLMMAGDWLQG-PY----VYYLYSTYGFGK-GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL---TY 112 (340)
Q Consensus 42 ~~~~~~~~~~~~~~~~-~~----~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~---~~ 112 (340)
++...++..+.+++.. .+ .+.+..+.+.+. ...++..+...+...+.++++|+++||+|||+++..... ..
T Consensus 16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~ 95 (1140)
T PRK06814 16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI 95 (1140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence 3444455555555542 21 112222333333 345677778888888999999999999999998643222 22
Q ss_pred HHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 019522 113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (340)
Q Consensus 113 ~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 188 (340)
.... .....++++.+++.|+++|++.+...|...+ ++.+. +++++..++.+...+ +|.++++.++++
T Consensus 96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a-~l~~~~~~~~~~~a~~~~~~~~~--------ig~~igp~l~g~ 166 (1140)
T PRK06814 96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS-ILPDHLNKDELLGANALVEAGTF--------IAILLGTIIGGL 166 (1140)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH-hhHhhcCccccchhhHHHHHHHH--------HHHHHHHHHHHH
Confidence 2222 3334589999999999999999999898877 76665 566665555544444 444444444444
Q ss_pred hhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCcc---chHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHH
Q 019522 189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSE---SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT 265 (340)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (340)
+.+..+|+ ..|...++..++..+.. ...++.++++++ ..+..++.....+.+.+++.++...+...+.+.....
T Consensus 167 l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1140)
T PRK06814 167 ATISGNFV--ILVALLMGIAVLGWLAS-LFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAV 243 (1140)
T ss_pred HHhccccH--HHHHHHHHHHHHHHHHH-hhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 44445554 44533333333332222 344443222111 1112233344567788888888876665555544444
Q ss_pred HHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 019522 266 FVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPR 311 (340)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 311 (340)
...+.|.|.++.++.+. +...+...++.+++.+..+++.||..++
T Consensus 244 -~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~ 291 (1140)
T PRK06814 244 -VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL 291 (1140)
T ss_pred -HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 46789999887766654 4666777889999999999999877655
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-17 Score=148.75 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=98.6
Q ss_pred hHH-HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccc-ccchHHHHHHHHHHHHHh-hhhccchHH-HHHHHHH
Q 019522 57 GPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYK-ILMIGRI 132 (340)
Q Consensus 57 ~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-~~~~~~~~~-~l~~~r~ 132 (340)
.++ ..++.+++|+++++.+++.+..........++.|+++|| +||||++..+.+++.++. .++++++.. .+++.|.
T Consensus 34 ~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~ 113 (489)
T PRK10207 34 QGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALG 113 (489)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 344 556677899999999988888887777888899999999 999999999999999988 777766544 3557899
Q ss_pred HHHHHhhhhhhhhhhhhhccc---c--ccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHH
Q 019522 133 LGGIATSLLFSAFESWLVAEH---N--KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA 205 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~--~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~ 205 (340)
++|+|.|...+...+ ++.|. + +|+.. ...++.+.++|..+|+.+++.+ .++.||+ +.|++..
T Consensus 114 l~~ig~g~~~~~~~~-li~~~~p~~~~~~~~~----~~~~~~~~nig~~~g~~l~g~l----~~~~gw~--~~F~i~~ 180 (489)
T PRK10207 114 TIAVGNGLFKANPAS-LLSKCYPPKDPRLDGA----FTLFYMSINIGSLISLSLAPVI----ADKFGYS--VTYNLCG 180 (489)
T ss_pred HHHhccccccCCHHH-HHHHhcCCCchhhhcc----hhHHHHHHHHHHHHHHHHHHHH----HHhhChH--HHHHHHH
Confidence 999999999888766 77764 2 22222 2334444444544454554444 4445655 5666653
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=145.96 Aligned_cols=231 Identities=20% Similarity=0.228 Sum_probs=165.8
Q ss_pred HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhh
Q 019522 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS 143 (340)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (340)
++.+-+++++|+++....+...+.+++.|.+.||+|+|..+++|..++..++ +.++.++++.+++.|.+||+|.+...+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 4566778899999999999999999999999999999999999999999998 899999999999999999999999988
Q ss_pred hhhhhhhccc----cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhccc
Q 019522 144 AFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSW 219 (340)
Q Consensus 144 ~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (340)
...+ +++|. ++|++.++..-++.+ +|-+++|.+++.+.+..|.+ .+|++.+++.++-..+.....
T Consensus 179 sgla-mlAd~f~~d~er~~vmGialgfis--------lG~lvgPpfGGilYe~~Gk~--aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 179 SGLA-MLADVFPEDNERGSVMGIALGFIS--------LGVLVGPPFGGILYEFAGKS--APFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred hhHH-HHHHHcccchhhhHHHHHHHHHHh--------ccceecCCcccchHhhcCCc--CcHHHHHHHHHHHHHHHHhee
Confidence 8877 65553 667886666666555 55555566666655555544 889999888888777765444
Q ss_pred ccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCC---chhhHHHHHHHHHHHH
Q 019522 220 TENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFMLASML 296 (340)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 296 (340)
++++.++++.++ ..+.++++++|..+.........+.. ..+.---++.+..+... ...+..+....+...+
T Consensus 248 ~p~~~~~~~~~~-----~~~~~~Ll~dP~I~~~agai~~~n~~-lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~i 321 (464)
T KOG3764|consen 248 EPTEMDPDSTEQ-----GTPMWSLLMDPYILLIAGAITFSNSS-LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAI 321 (464)
T ss_pred CccccCcccccc-----CccHHHHHhCchHhhhhcchhhccch-HHHhCcccHHHHHHhccCCCcceeeeecccccchhc
Confidence 433332221111 12345678888887765544333322 22222223333444333 2235666666788999
Q ss_pred HHHHHHHHHhhCCCCc
Q 019522 297 GSSLASRLMARSPPRV 312 (340)
Q Consensus 297 ~~~~~g~l~dr~g~~~ 312 (340)
+..+.|.+.||++..+
T Consensus 322 g~~lfg~la~k~~~~~ 337 (464)
T KOG3764|consen 322 GTNLFGKLADKYPHLR 337 (464)
T ss_pred cCchHHHHHHhcCchh
Confidence 9999999999999654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=135.68 Aligned_cols=245 Identities=15% Similarity=0.011 Sum_probs=141.4
Q ss_pred hhhhHHHHHHHHhhCCChhhhHHH--HHHHHhhhhhhhhhh-hhccccccchHHHHHHHHHH-HHHh-hhh---ccch-H
Q 019522 54 WLQGPYVYYLYSTYGFGKGEIGQL--FIAGFGSSMLFGTIV-GSLADKQGRKRACVTYCLTY-ILSC-ITK---HSPQ-Y 124 (340)
Q Consensus 54 ~~~~~~~~~~~~~~g~s~~~~g~~--~~~~~~~~~~~~~~~-G~l~Dr~Grr~~l~~~~~~~-~~~~-~~~---~~~~-~ 124 (340)
++..|++|.+.+|.|.|.+++|.+ .........+.+|+. ++..||+||||..++.+.+. +... ..+ ...+ .
T Consensus 18 ~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 97 (390)
T TIGR02718 18 GLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGA 97 (390)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhH
Confidence 444789999999999999999997 356677788889988 55899999999975555332 2111 111 2222 3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhH
Q 019522 125 KILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA 204 (340)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (340)
.+++...++.++..+...+..+. +..|.. |++..+....... .|..+|..+++....++.++.+ |+.+|++.
T Consensus 98 ~~~~~~~~~~~~~~a~~d~~~d~-~~~~~~-~~~~~~~~~~~~~----~g~~lG~~~g~~~~~~l~~~~g--w~~~f~~~ 169 (390)
T TIGR02718 98 GWAVGLLACASLASATQDIATDG-MAAEHF-NGRTLAKGNAVQI----AGVMIGFFGGGAGTLVLFGKFG--QRPAFLLV 169 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhC-CHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHhC--HHHHHHHH
Confidence 34444445555565666565555 444432 2222222333333 3444566666655555555555 45778777
Q ss_pred HHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhh
Q 019522 205 ACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG 284 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (340)
+.+.++...... ..+|++++++++++ +..++.++.+|+|..+.......+....... ...+.+.|.+| .|.++.
T Consensus 170 a~l~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~-~G~s~~ 243 (390)
T TIGR02718 170 ACVPLASLVCVL-WLKDRAVASPEAPL---ARRASLFRFFRRPLAWSLLALALLSAMTAVS-GFGLSKLYLVD-AGWPLE 243 (390)
T ss_pred HHHHHHHHHHHH-HcCCCCcCccccch---hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHH-HHHHhhHHHHh-cCCCHH
Confidence 766655444442 22222221111111 1122345678888776655544444443333 35567777766 466664
Q ss_pred HH---HHHHH-HHHHHHHHHHHHHHhhCCCCc
Q 019522 285 FI---FATFM-LASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 285 ~~---~~~~~-~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.. ..... ...+++.++.|++.||+|+|+
T Consensus 244 ~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~ 275 (390)
T TIGR02718 244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR 275 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33 33333 356677889999999999885
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=146.50 Aligned_cols=243 Identities=19% Similarity=0.176 Sum_probs=150.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 019522 73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVA 151 (340)
Q Consensus 73 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~ 151 (340)
+.+++.+...++..+++++.|+++|++|||+.+..+.+++.++. ++++++|+..++++|++.|+|.|...... +.+++
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~-piy~s 168 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLA-PVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcc-hhhHh
Confidence 44899999999999999999999999999999999999999998 88999999999999999999999997665 55888
Q ss_pred cc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhccccccc-----
Q 019522 152 EH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENY----- 223 (340)
Q Consensus 152 ~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 223 (340)
|. +.||...+..+.... .|..++..++..... ..++||.++.+..+..++..+.. ...||++
T Consensus 169 Eiap~~~RG~l~~~~~l~~~----~Gi~~~~~~~~~~~~-----~~~~Wr~~~~~~~i~~~~~~~~~-~~~pesp~~L~~ 238 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFIT----IGILLGYCINYGTSK-----VYAGWRIPLGLALIPAVILALGM-LFLPESPRWLIE 238 (513)
T ss_pred hcCChhhhHHHHHHHHHHHH----HHHHHHHHHhhhhcc-----CCccHHHHHHHHHHHHHHHHHHH-HhCCCChHHHHH
Confidence 87 566664444443333 333333232222221 11567777776666555555553 3444432
Q ss_pred -CCCccchHHHHHHHH--------------------H--------HHHHhh--c-hhHHHHHHHHHHhhhhHHHHHHhhc
Q 019522 224 -GDPSESKDLLTQFRG--------------------A--------AVAIAS--D-EKIALLGAIQSLFEGSMYTFVFLWT 271 (340)
Q Consensus 224 -~~~~~~~~~~~~~~~--------------------~--------~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (340)
++.++.++.....+. . +..+++ . ++.........+.+...+.....|.
T Consensus 239 ~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~ 318 (513)
T KOG0254|consen 239 KGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYS 318 (513)
T ss_pred cCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeeh
Confidence 222221111111100 0 111111 1 2223333444445555555555666
Q ss_pred cccccCCCCchh-hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHH
Q 019522 272 PALSPNDEEIPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL 328 (340)
Q Consensus 272 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 328 (340)
+.+.++....+. ........+...++..+...+.||+|||+ .+..+.....++..
T Consensus 319 ~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~--lll~s~~~m~~~~~ 374 (513)
T KOG0254|consen 319 TTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK--LLLFGAAGMSICLV 374 (513)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHhHHHHHHHHH
Confidence 666554433323 34445556777888888899999999994 44444444444433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-17 Score=145.81 Aligned_cols=280 Identities=13% Similarity=0.160 Sum_probs=191.1
Q ss_pred ccchhhHHHHHHHHHHH-HHhhh---hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHH
Q 019522 35 FNSFKNNYLLVYSLMMA-GDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (340)
Q Consensus 35 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~ 110 (340)
...+.|.+....++... .++.. +.+.+.+.++++.+.++++++.++......+.+|+.+.+.||+|.|.+.+.+.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 44566777666655544 34444 455889999999999999999999999899999999999999999999999999
Q ss_pred HHHHHh-hhhccchHHHHHH-HHHHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 111 TYILSC-ITKHSPQYKILMI-GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 111 ~~~~~~-~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
+.+++. +.+++++++.+++ .-++.|+|.+..+..... ++..+ ++|+.+ +.....|.++|..+-+.+.
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiv-iv~~YF~kkR~lA--------~Gia~~GsG~G~~~~~~l~ 190 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVV-ILGTYFEKKRALA--------TGIAVSGTGVGTVVFPPLL 190 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhh-hhhhHhHHHHHHH--------HhhhhccCCcceeeHHHHH
Confidence 999999 8899999987766 458899999999877755 67766 666663 3344456778888889999
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHHHHHHhcccc---cc----------------------------cCCCccc-----h
Q 019522 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT---EN----------------------------YGDPSES-----K 230 (340)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------------------------~~~~~~~-----~ 230 (340)
.++.+..||++. +++.+.+.+-.........| +. +++...+ .
T Consensus 191 ~~l~~~~G~r~~--~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (509)
T KOG2504|consen 191 KYLLSKYGWRGA--LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNL 268 (509)
T ss_pred HHHHHHhCcHHH--HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccch
Confidence 999988888754 43333322222222211122 00 0000000 0
Q ss_pred HH-------HH--HHHHH----HHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHH
Q 019522 231 DL-------LT--QFRGA----AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLAS 294 (340)
Q Consensus 231 ~~-------~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 294 (340)
+. .+ ..+.. ..+++|+|.++.+.....+.....+. ...++|.|.++. +.+. +...++.++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~-p~~~l~~~~~~~-g~~~~~aa~l~Siigi~~ 346 (509)
T KOG2504|consen 269 ATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV-PFVYLPSYAKSL-GLSSNDAAFLLSIIGVSD 346 (509)
T ss_pred hhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhhc-CCChhhhHHHHHHHHHhh
Confidence 00 00 11111 14678888888887776666665555 477888887743 3333 46778888999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH
Q 019522 295 MLGSSLASRLMARSPPRVESYMQIVFVVSSVSL 327 (340)
Q Consensus 295 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 327 (340)
++++++.|++.|+...++......+....++..
T Consensus 347 i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 347 IIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred hhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 999999999999988554244444444444443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=134.54 Aligned_cols=276 Identities=16% Similarity=0.139 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccccc-chHHHHHHHHHHHHHh-
Q 019522 39 KNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-RKRACVTYCLTYILSC- 116 (340)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-rr~~l~~~~~~~~~~~- 116 (340)
+.++-...++-.+..+...|+.|.+.++.|+|..|+|.+.+...+...+..+++|.++||.+ +||.+.+..++.++..
T Consensus 4 ~~rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~ 83 (400)
T PF03825_consen 4 KFRLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence 44555566666677777889999999999999999999999999999999999999999986 5777777777766655
Q ss_pred hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCC
Q 019522 117 ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL 195 (340)
Q Consensus 117 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~ 195 (340)
.....++++.++...++..+......|..++ +.-+. ++++...+......+++...+... .+..+.+. .++
T Consensus 84 ~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ds-i~~~~~~~~~~~YG~iRlwGSiGf~~~~~~---~~~~~~~~----~~~ 155 (400)
T PF03825_consen 84 LLAFSSSFWWLFVIMLLFSFFFSPTMPLSDS-IALSYLGDRGKDYGRIRLWGSIGFIVAALA---FGGLLGGY----LGI 155 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHHHccHHHHHHH-HHHHHcccccCCCCcchhhhhHHHHHHHHH---HHHHHHhh----hcc
Confidence 5567788888888888888877777777766 43333 333343344444444333322211 11122221 222
Q ss_pred C-cchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcccc
Q 019522 196 G-PVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (340)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (340)
. ....+++.+...++..... ...|+.+++++++++..++..++..+++|||++....+...+.+ ........+.+.|
T Consensus 156 ~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~-~~~~~~~~f~~~y 233 (400)
T PF03825_consen 156 SGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIG-ISHAAYYTFFSIY 233 (400)
T ss_pred ccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1 1233444443333332222 22333322111111111222223346889999887655554443 3333346677888
Q ss_pred ccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 019522 275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS 326 (340)
Q Consensus 275 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 326 (340)
+++..+.+. +...++..+++++.-...+++.+|+|.+ +.+.++....++=
T Consensus 234 l~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~--~ll~~a~~~~~vR 286 (400)
T PF03825_consen 234 LQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK--WLLLLALVAYAVR 286 (400)
T ss_pred HHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHH
Confidence 877654332 4555666788999999999999999988 4555555544443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-15 Score=136.15 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=99.5
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.+.++.+.+|+|-+ .+..++.+...+...+..++.|+++|.+|||..++.+.++..++. .++.++|...++.+..+.|
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G 142 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG 142 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH
Confidence 34578899999854 556688888888888899999999999999999999999999999 8899999999999999999
Q ss_pred HHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 211 (340)
+|.|..... .. .++|. ..|.+.... .... ....+....++.+++.+..+.+||| .|++.++...+.
T Consensus 143 vgaG~~~~~-~~-~isEl~p~k~R~~~~--~~~~----~~~i~~~~~~~~ia~~~~~~~~WRw--~~~~~~i~~~i~ 209 (599)
T PF06609_consen 143 VGAGVQELA-AL-AISELVPNKWRGLGL--AIAS----IPFIITTWISPLIAQLFAAHSGWRW--IFYIFIIWSGIA 209 (599)
T ss_pred HhhHHHHHH-HH-HHHHhcccchhhhHh--HHHH----HHHHhhhcccHHHHHHhccCCCcch--HHHHHHHHHHHH
Confidence 998777543 23 56776 333332111 1111 1222222345555555444456665 455554444333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=134.15 Aligned_cols=250 Identities=18% Similarity=0.234 Sum_probs=146.1
Q ss_pred HHHhhC--CChhhhH----HHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh---hccchHHHHHHHHH
Q 019522 63 LYSTYG--FGKGEIG----QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMIGRI 132 (340)
Q Consensus 63 ~~~~~g--~s~~~~g----~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~---~~~~~~~~l~~~r~ 132 (340)
+.+++| .++++.. .+.+...+++++++...|.++||+|||..+..+.++..++. +. ...+++..++++|+
T Consensus 45 ~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~ 124 (485)
T KOG0569|consen 45 LIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRL 124 (485)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345666 5555554 45667788888999999999999999999999988887755 32 34788999999999
Q ss_pred HHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHH
Q 019522 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 209 (340)
+.|+..|...... ++++.|. +.||. .+.....+..+|..+|..++.. ..+.+... |.+.+....+..+
T Consensus 125 i~Gl~~gl~~~~~-pmyl~E~sP~~~RG~----~g~~~~~~~~~g~ll~~~~~l~--~ilGt~~~--W~~l~~~~~i~~~ 195 (485)
T KOG0569|consen 125 IVGLACGLSTGLV-PMYLTEISPKNLRGA----LGTLLQIGVVIGILLGQVLGLP--SLLGTEDL--WPYLLAFPLIPAL 195 (485)
T ss_pred HHHHHhHHHHHHH-HHHHhhcChhhhccH----HHHHHHHHHHHHHHHHHHHccH--HhcCCCcc--hHHHHHHHHHHHH
Confidence 9999999986665 6688886 67777 3344444444444444333211 11112223 4455666666555
Q ss_pred HHHHHHhccccccc-------CCCccchHHHH-----------------HHHH---------HHHHHhhchhHHHH----
Q 019522 210 IGMVIILSSWTENY-------GDPSESKDLLT-----------------QFRG---------AAVAIASDEKIALL---- 252 (340)
Q Consensus 210 ~~~~~~~~~~~~~~-------~~~~~~~~~~~-----------------~~~~---------~~~~~~~~~~~~~~---- 252 (340)
+..... ++.||++ ++++|+++..+ +.++ ...++++||....-
T Consensus 196 ~~l~~l-~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~ 274 (485)
T KOG0569|consen 196 LQLALL-PFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIG 274 (485)
T ss_pred HHHHHH-hcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHH
Confidence 555555 5666643 22222211110 0000 13356666443322
Q ss_pred HHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 019522 253 GAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV 325 (340)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 325 (340)
.......+......+..|....+++. |.+. .......+....+.++++.++.||.|||+ .++.......+
T Consensus 275 ~~v~~~qq~sGi~ai~~Yst~i~~~a-G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp--Lll~~~~~~~~ 347 (485)
T KOG0569|consen 275 IVVSFAQQFSGINAIFFYSTSIFKTA-GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP--LLLISLSLMAV 347 (485)
T ss_pred HHHHHHHHhcCcceeHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHH
Confidence 22222223333222333433333332 3333 24556667889999999999999999995 44444433333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-14 Score=128.83 Aligned_cols=280 Identities=17% Similarity=0.120 Sum_probs=158.8
Q ss_pred HHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccc----cccchHHHHHH-HHHHHHHh-hhhccch
Q 019522 50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTY-CLTYILSC-ITKHSPQ 123 (340)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grr~~l~~~-~~~~~~~~-~~~~~~~ 123 (340)
.+....+.++.+.+.+++|.++.+.+.+.....+.+.+.+|+.|+++| |+||||+++.+ .....++. +.+++++
T Consensus 17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 444555578878888999999999999999999999999999999999 59999999876 44444455 5566655
Q ss_pred HH-----------------HHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 124 YK-----------------ILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 124 ~~-----------------~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
.. ..+++-.+..++.....+...+ ++.|. .++.+..+...+..+....+|+.+|+.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rA-LiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRA-FLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2233333444566766676656 88876 21111112223333333344444555544432
Q ss_pred h--h---hh----hcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccc--------h---HHHHHHHHHHHHHhh
Q 019522 186 G--N---LL----VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES--------K---DLLTQFRGAAVAIAS 245 (340)
Q Consensus 186 ~--~---~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~ 245 (340)
. . .. .+....+.+..|.+.+++.++.........+|++..++++ . +..+..++-++.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 255 (477)
T TIGR01301 176 GLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKY 255 (477)
T ss_pred hHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHH
Confidence 1 1 00 0111124457788877777777666655666643211110 0 001111222333333
Q ss_pred chh-HHHHHHHHHHhhhhHHHHHHhhcccccc-CCCCc--------hhh-----HHHHHHHHHHHHHHHHHHHHHhhCCC
Q 019522 246 DEK-IALLGAIQSLFEGSMYTFVFLWTPALSP-NDEEI--------PHG-----FIFATFMLASMLGSSLASRLMARSPP 310 (340)
Q Consensus 246 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~-----~~~~~~~~~~~~~~~~~g~l~dr~g~ 310 (340)
-|+ .+.++....+.+.+.+.+ ..|...|.. +.++. +.+ .....+.+...+.+++..++.+|+|+
T Consensus 256 mP~~m~~l~~vqffsW~a~f~~-~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~ 334 (477)
T TIGR01301 256 LPRPVWILLLVTCLNWIAWFPF-ILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA 334 (477)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344 455666666666666654 445554432 22221 112 23344555566777888999999986
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 019522 311 RVESYMQIVFVVSSVSLLLPIV 332 (340)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~ 332 (340)
|+ +.-..+..+.++++....+
T Consensus 335 ~k-~~~~~s~~~~~~~l~~~~~ 355 (477)
T TIGR01301 335 GK-RLWGIVNIILAICLAATVL 355 (477)
T ss_pred ch-hHHHHHHHHHHHHHHHHHH
Confidence 43 3434555555555555543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=137.01 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=104.3
Q ss_pred hhhHHHHHHHH-h--hCCChhhhHHHHHHHHhhhhhhhhhhhhcccc-ccchHHHHHHHHHHHHHh-hhhccchHHHHHH
Q 019522 55 LQGPYVYYLYS-T--YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMI 129 (340)
Q Consensus 55 ~~~~~~~~~~~-~--~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~ 129 (340)
...+++|.+.+ + +|++..+.|.+.+.......++.++.|+++|| +|||+++..+.++.+++. +.+++++++.+.+
T Consensus 28 ~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~ 107 (475)
T TIGR00924 28 GMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFY 107 (475)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 33577776655 4 89999999999999999899999999999999 899999999999999988 7788888888889
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccc---c---ccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhh
Q 019522 130 GRILGGIATSLLFSAFESWLVAEH---N---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA 203 (340)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~ 203 (340)
.|.+.|++.|...+...+ +++|. + +|+...++ ...+.+ +|..+++.+.+++.++.+|+ ..|.+
T Consensus 108 ~~~l~g~g~g~~~~~~~~-~~a~~~~~~~~~~r~~~~~~----~~~~~n----iG~~ig~~l~g~l~~~~g~~--~~f~~ 176 (475)
T TIGR00924 108 GLGTIAVGSGLFKANPSS-MVGKLYERGDMPRRDGGFTL----FYMSIN----IGSFISPLLAGVIAENYGYH--VGFNL 176 (475)
T ss_pred HHHHHHhccccccCCHHH-HHHHhcCCCCcccccceehh----HHHHHH----HHHHHHHHHHHHHHHhcChH--HHHHH
Confidence 999999999988777755 66554 1 24333222 233333 44444444444444445554 66666
Q ss_pred HHHHHH
Q 019522 204 AACFLA 209 (340)
Q Consensus 204 ~~~~~~ 209 (340)
.++..+
T Consensus 177 ~~~~~~ 182 (475)
T TIGR00924 177 AAVGMV 182 (475)
T ss_pred HHHHHH
Confidence 554333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-15 Score=124.86 Aligned_cols=238 Identities=18% Similarity=0.180 Sum_probs=169.0
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHhhh-hccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT-KHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~-~~~~~~~~l~~~r~l~G 135 (340)
.|.++++.+|+|+|.++.|.+.+...+.-...+++..++++|+|.++.+..++++.+++.+. ... +...++.+-.+.|
T Consensus 32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G 110 (395)
T COG2807 32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAG 110 (395)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence 68899999999999999999999999988899999999999999999999999999999844 444 7788889999999
Q ss_pred HHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
.|.+..+....+ ++.++ ++-+. ....|+.....+.++++.+...+.+.. .+|++...+| +...++..+
T Consensus 111 ~gIav~nVLLPs-lIK~~Fpk~~~~----mtglYs~sl~~~aaLaa~lavpla~~~---~gW~~aL~~W--Al~allAl~ 180 (395)
T COG2807 111 AGIAVINVLLPS-LIKRDFPKRVGL----MTGLYSTSLGAGAALAAALAVPLAQHS---GGWRGALGFW--ALLALLALL 180 (395)
T ss_pred hhHHHHHHhhhH-HHHhhcccchhh----HHhHHHHHHHHHHHHHhhhhhHHHHhh---ccHHHHHHHH--HHHHHHHHH
Confidence 999999887755 77776 33344 555566666666666666666666542 3466544343 333333333
Q ss_pred HHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCC-CCchh-hHHHHHHH
Q 019522 214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND-EEIPH-GFIFATFM 291 (340)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 291 (340)
...|...+++ ..+++. ...+...++|+|..|.+.+...+.+...|. ...|+|.++.|. .+... +...+...
T Consensus 181 ~WlPq~~r~~-~~~~~~-----~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~-~~~WLP~ili~~G~sa~~aG~llsl~~ 253 (395)
T COG2807 181 IWLPQALREQ-AASIAT-----KLVSVRKVWRSPLAWQVTLFMGLQSLLYYI-VIGWLPAILIDRGLSAAEAGSLLSLMQ 253 (395)
T ss_pred HHhhhccccc-cccccc-----ccccccccccCchhHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCCCHHHhhhHHHHHH
Confidence 3323321111 111110 011223578999999988877776666666 699999887654 32222 46677888
Q ss_pred HHHHHHHHHHHHHHhhCCCCc
Q 019522 292 LASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 292 ~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+..++..+....+.+|...++
T Consensus 254 l~~~~~~ll~P~la~R~~n~r 274 (395)
T COG2807 254 LAQLPTALLIPLLARRSKNQR 274 (395)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 899999999999999865443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-14 Score=129.57 Aligned_cols=247 Identities=13% Similarity=0.169 Sum_probs=138.9
Q ss_pred hHH-HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccc----ccchHHHH-HHHHHHHHHh-hhhccc------h
Q 019522 57 GPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRACV-TYCLTYILSC-ITKHSP------Q 123 (340)
Q Consensus 57 ~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Grr~~l~-~~~~~~~~~~-~~~~~~------~ 123 (340)
..+ .+.+.+++|+++.++|.+.....+...+..|+.|+++|| +||||..+ .+.+..+++. +....| .
T Consensus 29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~ 108 (444)
T PRK09669 29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK 108 (444)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 344 455566899999999999999999999999999999998 78755544 5666666655 333333 2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhccc----cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc-ccCCCcc
Q 019522 124 YKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPV 198 (340)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~-~~~~~~~ 198 (340)
..++++..++.+.+.........+ +..|. ++|.+..++...... +|..+++.+...+...+.+ ....+|+
T Consensus 109 ~~~~~~~~~l~~~~~t~~~ip~~a-l~~~~t~~~~eR~~l~~~r~~~~~----~G~~i~~~~~~pl~~~~~~~~~~~g~~ 183 (444)
T PRK09669 109 IIYACVTYILLSLVYTAINVPYCA-MPGAITNDPRERHSLQSWRFALSF----IGGLIVSVIALPLVDILGKGDEQKGYF 183 (444)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHH-hHHHhcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 455566666667666655544444 55443 555554444444333 3443444433333333211 1112344
Q ss_pred hhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCC
Q 019522 199 APFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND 278 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (340)
..+.+.+++..+..+......+|+.+++++++ ++..+..+.++|||+++.+.....+..... .......+.|.+..
T Consensus 184 ~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~-~~~~~~~~y~~~~~ 259 (444)
T PRK09669 184 YAMMVMGLLGVVLFFCCFFMTKERYTPEVDNS---SSVWKDLKLLLGNSQWRIMFIFNVVLLTAV-VTRGGATLYYVNYV 259 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEecCCCCcCC---CCHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHhhhhheeeeee
Confidence 55555555554444433333344322221111 223345567789988877655444332222 22223333333333
Q ss_pred CCchh--hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 279 EEIPH--GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 279 ~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.+.+. +.......+..+++.++.+++.||+|+|+
T Consensus 260 ~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~ 295 (444)
T PRK09669 260 LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR 295 (444)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 33222 23334445677788899999999999885
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=137.11 Aligned_cols=265 Identities=17% Similarity=0.189 Sum_probs=163.2
Q ss_pred HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccc----cccchHHHH-HHHHHHHHHh-hhhcc-c-------hHH
Q 019522 60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACV-TYCLTYILSC-ITKHS-P-------QYK 125 (340)
Q Consensus 60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grr~~l~-~~~~~~~~~~-~~~~~-~-------~~~ 125 (340)
.+.+.+..|+++..+|.+....-+...+..|+.|.++| |+||||..+ .+.+..+++. ++... | ...
T Consensus 25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 45566677999999999999999999999999999999 899877665 5667777776 44433 3 223
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccc----cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC-CCcchh
Q 019522 126 ILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAP 200 (340)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~-~~~~~~ 200 (340)
.+.+..++..++.........+ +..|. ++|.+..++..... ..|..+...+.+.+...+.+... .+|+..
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~a-l~~~lt~~~~~R~~l~~~~~~~~----~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~ 179 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNA-LIPELTPDPDERTRLSSWRMIFS----MIGSLLASFLAPILVSWFGGGDTSNGYRWM 179 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhh-cCccccccHhhhhhHHHHHHHHH----HHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence 4566667778887777666555 55553 56666444443333 33443333444444433332221 145555
Q ss_pred hhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCC
Q 019522 201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE 280 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (340)
..+.+++..+.........+|++++. ++++...+.++..+.++|||++..+.....+...... ......+.|.++..+
T Consensus 180 ~~v~~iv~~v~~~i~~~~~ke~~~~~-~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~-~~~~~~~y~~~~vl~ 257 (428)
T PF13347_consen 180 ALVLAIVGLVFFLITFFFVKERSVEV-TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFA-LMNTFLPYYFTYVLG 257 (428)
T ss_pred HHHHHHHHHHHhhhhhheeeeccccc-cccccccccccchhhhcccchHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhc
Confidence 66666666665555545555522222 2222233445566788899888876555555433333 234445555555444
Q ss_pred chh--hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHh
Q 019522 281 IPH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT 333 (340)
Q Consensus 281 ~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 333 (340)
.+. +.......+..+++.++.++++||+|+|+ ....+..+.++......+.
T Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~--~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 258 NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKK--VYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHcccee--ehhhhHHHHHHHHHHHHHH
Confidence 432 45556678888999999999999999994 5555555555555444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-13 Score=126.70 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=94.3
Q ss_pred hHHH-HHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccc-ccchHHHHHHHHHHHHHh-hhhccc-hHHHHHHHHH
Q 019522 57 GPYV-YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRI 132 (340)
Q Consensus 57 ~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-~~~~~~-~~~~l~~~r~ 132 (340)
.+++ +++.+++|+++++.+.+.+..........++.|+++|| +|||+.+..+.++.+++. ++++++ +...+.+.|.
T Consensus 41 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~ 120 (500)
T PRK09584 41 QGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMA 120 (500)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4554 44457899999998877766555445555689999999 599999999999999887 666754 5566778899
Q ss_pred HHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHH
Q 019522 133 LGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC 206 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 206 (340)
++|++.|...+...+ ++.|. +++.+..+ ....+..+.+ +|..+++.+.+++.++.||+ ..|.+.++
T Consensus 121 l~gig~g~~~~~~~~-l~~~~f~~~~~~~~~-~~~~~~~~~~----iG~~~gp~i~g~l~~~~g~~--~~F~i~~i 188 (500)
T PRK09584 121 TIAVGNGLFKANPSS-LLSTCYEKDDPRLDG-AFTMYYMSIN----IGSFFSMLATPWLAAKYGWS--VAFALSVV 188 (500)
T ss_pred HHHHhhhcccCCHHH-HHHHhcCCCchhhhh-cchHHHHHHH----HHHHHHHHHHHHHHHhhCHH--HHHHHHHH
Confidence 999999988776655 66664 22222111 1122233333 55555555555555555554 66766554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-17 Score=138.77 Aligned_cols=184 Identities=17% Similarity=0.129 Sum_probs=133.2
Q ss_pred chhhHHHHHHHHHHHHHhhh----hHHHHHHHHhh-C-------CChhhhHHHHHHHHhhhhhhhhhhhhccccccchHH
Q 019522 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY-G-------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA 104 (340)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-g-------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~ 104 (340)
+++...+.+.....+.|+++ ++..|.+...| + +++...+.+.....++..+++++.|++.||+|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 34445666677777888888 23344333322 1 445556788888889889999999999999999999
Q ss_pred HHHHHHHHHHHh-hhhcc-----c--hHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHh
Q 019522 105 CVTYCLTYILSC-ITKHS-----P--QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFL 173 (340)
Q Consensus 105 l~~~~~~~~~~~-~~~~~-----~--~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~ 173 (340)
+...++++.+++ ++++. + -..++...|++.|+|.|.-+|...+ +.+|. ++||...+...+.++.+...
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAt-I~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSAT-IMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHH-HhhhhhhhccccceeEEEEEecchhHhh
Confidence 999999998877 55542 1 2458889999999999999998855 88887 78888888888888888887
Q ss_pred hhhHHHHHHHhhhhhhhc-----ccCCCcchhhhhHHHHHHHHHHHHhcccccc
Q 019522 174 GNGLVAILSGLFGNLLVD-----SFSLGPVAPFDAAACFLAIGMVIILSSWTEN 222 (340)
Q Consensus 174 g~~ig~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (340)
|..++.++...+-..+-+ +.+.-||..+.+.++..+...... ...||+
T Consensus 196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R-l~M~Et 248 (538)
T KOG0252|consen 196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR-LKMPET 248 (538)
T ss_pred ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh-hcCCcc
Confidence 776666665554443322 122337888888877777766666 455554
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-13 Score=125.10 Aligned_cols=259 Identities=12% Similarity=0.008 Sum_probs=142.1
Q ss_pred hhhhHHH-HHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc----cchHHH-HHHHHHHHHHh-hh-h----cc
Q 019522 54 WLQGPYV-YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ----GRKRAC-VTYCLTYILSC-IT-K----HS 121 (340)
Q Consensus 54 ~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~----Grr~~l-~~~~~~~~~~~-~~-~----~~ 121 (340)
+...+++ +++.++.|+++.++|.+.+...+...+..++.|+++||. ||||.. ..+.+...+.. +. . ..
T Consensus 25 ~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (448)
T PRK09848 25 AMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWS 104 (448)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 3345663 445556799999999999999999999999999999996 777755 45545444433 22 1 11
Q ss_pred ch--HHHHHHHHHHHHHHhhhhhhhhhhhhhc----cccccchhhHHHHHHHHH-HHHhhhhHHHHHHHhhhhhhhcccC
Q 019522 122 PQ--YKILMIGRILGGIATSLLFSAFESWLVA----EHNKRGFEQQWLSITFSK-AIFLGNGLVAILSGLFGNLLVDSFS 194 (340)
Q Consensus 122 ~~--~~~l~~~r~l~G~~~~~~~~~~~~~~i~----~~~~r~~~~~~~~~~~~~-~~~~g~~ig~~~~~~~~~~l~~~~~ 194 (340)
++ ....+....+.+++.+...+...+ +.. |.++|....++.....+. +...+..+++.+++..++. ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~----~~ 179 (448)
T PRK09848 105 HSSKVVYAYLTYMGLGLCYSLVNIPYGS-LATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEE----MV 179 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccHhh-hhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----hh
Confidence 22 233444556777777777665544 333 335555543333322121 2223333444443322211 01
Q ss_pred CCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcccc
Q 019522 195 LGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (340)
..+.....+.+++..+.........+|+.++++++ +...+..+.++|||++........+....... .....|.|
T Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~-~~~~~~~~ 254 (448)
T PRK09848 180 SVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----PSLKISLQTLKRNRPLFMLCIGALCVLISTFA-VSASSLFY 254 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-Hhhhheee
Confidence 11111111222222222223323445543322221 12334466788999998876665555444444 35567778
Q ss_pred ccCCCCchhh--HHH-HHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHH
Q 019522 275 SPNDEEIPHG--FIF-ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSS 324 (340)
Q Consensus 275 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 324 (340)
.++..+.+.. ... ....++.+++.++.+++.||+++|+ .+..+..+..
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~--~~~~g~~~~~ 305 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN--TFLIGALLGT 305 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHH
Confidence 7777776553 222 2224567788899999999999884 4444444333
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=120.37 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=114.2
Q ss_pred ccchhhHHHHHHHHHHHHHhhhh----HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHH
Q 019522 35 FNSFKNNYLLVYSLMMAGDWLQG----PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (340)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~ 110 (340)
+.+++|............+.+.. -..|...+..|.+..|..++....+.+..+++..+|..+|++|||+.+....+
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 45677777776666666665552 33677777889999999999999999888888899999999999999999999
Q ss_pred HHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 111 ~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
..++.- +.+.+||+..+.+.|.+.|+|.|+ .|...+ +-.|. .+|+...- ....+. +|.+....++
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~-~yle~lp~~~r~~~~V-~~~~wa--------ig~v~ea~la 220 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSA-IYLEFLPSSHRWLLTV-MSFFWA--------IGQVFEALLA 220 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHH-HHHHhccCcCCCcchh-HHHHHH--------HHHHHHHHHH
Confidence 888855 888999999999999999999999 577656 43443 44444221 113333 5555555555
Q ss_pred hhhhcccCCCcchh
Q 019522 187 NLLVDSFSLGPVAP 200 (340)
Q Consensus 187 ~~l~~~~~~~~~~~ 200 (340)
-....+.||||++.
T Consensus 221 w~vm~~~gwr~~l~ 234 (528)
T KOG0253|consen 221 WGVMSNFGWRYLLF 234 (528)
T ss_pred HHHHHhhhHHHHHH
Confidence 55556678887653
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=133.26 Aligned_cols=253 Identities=15% Similarity=0.115 Sum_probs=152.4
Q ss_pred HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhh
Q 019522 64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLF 142 (340)
Q Consensus 64 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~ 142 (340)
.+.++.+........+..+++..+++.+.|+++||+|||+++..+.++..++. ..++++|++.+++.|++.|++.+...
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 35566677777788888888888888899999999999999999999999977 88999999999999999999999998
Q ss_pred hhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHh---
Q 019522 143 SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL--- 216 (340)
Q Consensus 143 ~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 216 (340)
..... ++.|. ++|+..... ..... .++.+++..+.++.+ +||+.+++..+...+..++..
T Consensus 190 ~~~~~-~~~E~~~~~~R~~~~~~-~~~~~--------~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~ 255 (521)
T KOG0255|consen 190 TVGFG-LVAEIVSPKQRGLALTL-GGFFF--------VGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPP 255 (521)
T ss_pred HHhHh-hheeecCcchhhHHHHH-HHHHH--------HHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccC
Confidence 88756 88887 566664333 11211 344444444555443 345666666555554433321
Q ss_pred --cccccccCCCccchHHHHHHH-------------------H-----------HHHHHhhchhHHHHHHHHHHhhhhHH
Q 019522 217 --SSWTENYGDPSESKDLLTQFR-------------------G-----------AAVAIASDEKIALLGAIQSLFEGSMY 264 (340)
Q Consensus 217 --~~~~~~~~~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (340)
++|...+++.+++.+..++.. + ....+++.|+.........+.. ..+
T Consensus 256 Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~-~~~ 334 (521)
T KOG0255|consen 256 ESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIW-FVF 334 (521)
T ss_pred cChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHH-HHH
Confidence 222222222222222111110 0 0112333443222222222111 111
Q ss_pred HHHHhhccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 019522 265 TFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334 (340)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (340)
. ...+.-.+..+..|.+...................+...|+.||| ...........+++....+..
T Consensus 335 ~-~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~--~~~~~~~~~~~~~~~~~~~~~ 401 (521)
T KOG0255|consen 335 S-LVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRR--PPLFLSLFLAGIGLLLFGWLP 401 (521)
T ss_pred h-HHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHhh
Confidence 1 122222333444566666666666667888888889999999888 455555555555555544443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=125.25 Aligned_cols=254 Identities=15% Similarity=0.141 Sum_probs=139.9
Q ss_pred HhhhhHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccc----cccchH-HHHHHHHHHHHHh-hhhccc---
Q 019522 53 DWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKR-ACVTYCLTYILSC-ITKHSP--- 122 (340)
Q Consensus 53 ~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grr~-~l~~~~~~~~~~~-~~~~~~--- 122 (340)
.....++++.++ +.+|+++.++|.+....-+...+..|+.|.++| |+|||| .+..+.+..+++. +....+
T Consensus 22 ~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~ 101 (473)
T PRK10429 22 IGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFE 101 (473)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCC
Confidence 344456644544 457999999999999999999999999999999 669955 5556766667765 332222
Q ss_pred ---hHHHHHHHHHHHHHHhhhhhhhhhhhhhcc----ccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC-
Q 019522 123 ---QYKILMIGRILGGIATSLLFSAFESWLVAE----HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS- 194 (340)
Q Consensus 123 ---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~----~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~- 194 (340)
.+..+++..++.+++.........+ +..| .++|.+..++.....+. |..+.+.+...+.....+...
T Consensus 102 ~~~~~~~~~~~~~l~~~~~t~~~ip~~a-l~~~lt~~~~eR~~l~~~~~~~~~i----g~~~~~~~~~~~~~~~g~~~~~ 176 (473)
T PRK10429 102 GTAQYVFVCVTYILWGMTYTIMDIPFWS-LVPTLTLDKREREQLVPYPRFFASL----AGFVTAGFTLPFVNYVGGGDRG 176 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcchHHh-hhHHhCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCchh
Confidence 1334555566667776666555544 4443 36666644443333332 222222222211111111010
Q ss_pred CCcchhhhhHHHHHHHHHHHHhcccccccCCCc--cchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcc
Q 019522 195 LGPVAPFDAAACFLAIGMVIILSSWTENYGDPS--ESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (340)
-+|+....+.+++..+..+......+|+..+++ ++++...+.++..+.++|||+++.+.....+... .......+.+
T Consensus 177 ~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~-~~~~~~~~~~ 255 (473)
T PRK10429 177 FGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNI-ASNIINGFAI 255 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHhhhee
Confidence 123333344444444333333333444321111 1111112234455567788887776555554443 3333355555
Q ss_pred ccccCCCCchh--hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 273 ALSPNDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 273 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.|.+...+.+. +.......++.+++.++.+++.||+|+|+
T Consensus 256 y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~ 297 (473)
T PRK10429 256 YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI 297 (473)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 55554433322 23445556778889999999999999985
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-14 Score=124.34 Aligned_cols=276 Identities=16% Similarity=0.147 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHH--H
Q 019522 39 KNNYLLVYSLMMAGDWLQGPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL--S 115 (340)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~--~ 115 (340)
.|..-...+...+..+...|+.|...++ .|+|.+|+|.+++...+...+.+|+.|.++||.|.||-++.......+ +
T Consensus 9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~ 88 (412)
T PF01306_consen 9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFG 88 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 3444444444455556667997777765 899999999999999999999999999999999977655544333322 2
Q ss_pred h-h-hhccc----hHH-HHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 019522 116 C-I-TKHSP----QYK-ILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (340)
Q Consensus 116 ~-~-~~~~~----~~~-~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 187 (340)
. . ..+.| |.+ ..+++-+..|+......|..++ ++.+. ++.+.-.+......+. |.+++..+++.+.+
T Consensus 89 pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea-~~er~sr~~~feYG~~R~wGSi----g~ai~s~~~G~L~~ 163 (412)
T PF01306_consen 89 PFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEA-YAERVSRRNGFEYGRARMWGSI----GFAIASLLAGILFN 163 (412)
T ss_dssp HHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHH-HHHHHHHHHSS-HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH-HHHHHHHHhcCCcchHHHHhhH----HHHHHHHHhheeee
Confidence 2 1 12222 221 2222223333333344444444 44333 4444544555555553 33344444444333
Q ss_pred hhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCC--Ccc--chHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhH
Q 019522 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD--PSE--SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM 263 (340)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (340)
. .....|++.....++..++.....|++.++ .++ ..+..+...++..+++|+|++|.+.+....... .
T Consensus 164 i-------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~-~ 235 (412)
T PF01306_consen 164 I-------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAA-I 235 (412)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHH-H
T ss_pred e-------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHH-H
Confidence 2 222556655544444333332222221111 111 111111112345678999999987664433332 3
Q ss_pred HHHHHhhccccccCCCCch------hhHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHH
Q 019522 264 YTFVFLWTPALSPNDEEIP------HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLL 329 (340)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 329 (340)
|...-...|.|.++..+.. .|...+...+.+++.....+++.+|+|.| +.+.+...+..+=...
T Consensus 236 Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k--~~Lllag~i~~iRi~~ 305 (412)
T PF01306_consen 236 YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK--NLLLLAGVIMAIRIIG 305 (412)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH--hHHHHHHHHHHHHHHH
Confidence 3322222344443322211 14555666777889999999999999999 4555555555444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=120.49 Aligned_cols=110 Identities=21% Similarity=0.277 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 019522 72 GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLV 150 (340)
Q Consensus 72 ~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i 150 (340)
.-.|.+-+...+...+.++.+|.++||+|||+++.++++..+++. +.+.+.|+..+.+.|++.|+..|... ...+ ++
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~-v~rA-ii 145 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS-VIRA-II 145 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH-HHHH-HH
Confidence 345778888888889999999999999999999999999999988 88999999777777999999988774 4446 77
Q ss_pred ccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 019522 151 AEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (340)
Q Consensus 151 ~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 187 (340)
+|. +.|+..++.....++ +|..+|+.+|+.+..
T Consensus 146 sdV~sek~r~l~ms~v~~a~~----lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFG----LGFILGPMIGGYLAQ 181 (451)
T ss_pred HhhcChhhccceeeeeehhhh----cchhhcchhhhHHHh
Confidence 775 667776665655555 444455555555544
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-13 Score=116.62 Aligned_cols=272 Identities=16% Similarity=0.188 Sum_probs=169.0
Q ss_pred hhhHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccc----ccchHHHH-HHHHHHHHHh-hhhccc-----
Q 019522 55 LQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRACV-TYCLTYILSC-ITKHSP----- 122 (340)
Q Consensus 55 ~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Grr~~l~-~~~~~~~~~~-~~~~~~----- 122 (340)
....++..++ +..|+++..+|.++...-+.-.+..|+.|.++|| +||+|..+ .+.+..++.+ ++-.++
T Consensus 30 ~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~ 109 (467)
T COG2211 30 IVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMT 109 (467)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccC
Confidence 3345555554 4689999999999999999999999999999994 78766554 5557777766 554444
Q ss_pred -hHHHHHHHHHHHHHHhhhhhhhhhhhhhc----cccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc-CCC
Q 019522 123 -QYKILMIGRILGGIATSLLFSAFESWLVA----EHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SLG 196 (340)
Q Consensus 123 -~~~~l~~~r~l~G~~~~~~~~~~~~~~i~----~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~-~~~ 196 (340)
+....++...+.+++.........+ +.. |.++|.+..++.+...+.+.. +...+.+++.....+.. .++
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~a-l~~~iT~d~~ER~~l~s~R~~~~~~g~~----l~~~~~~plv~~~g~~~~~~g 184 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGA-LGPEITQDPQERASLTSWRMVFASLGGL----LVAVLFPPLVKLFGGGDKALG 184 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhh-cchhhcCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCcchhh
Confidence 3446667778888888777655444 433 347888866666666654433 33344433333333222 445
Q ss_pred cchhhhhHHHHHHHHHHHHhcccccccCCCccchH-HHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccc
Q 019522 197 PVAPFDAAACFLAIGMVIILSSWTENYGDPSESKD-LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS 275 (340)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (340)
|+....+.+++..+..++.....+|+..+.++.++ ...+.++.....+|||++...+.. .++....+.........|.
T Consensus 185 ~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~-~l~~~~~~~i~~s~~~yy~ 263 (467)
T COG2211 185 YQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLM-NLLLFIAFNIRGSIMVYYV 263 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHH-HHHHHHHHHHHhhhhheeE
Confidence 55555555555555555554444554432222222 334444455678899988887664 4444444444455556666
Q ss_pred cCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 019522 276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334 (340)
Q Consensus 276 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (340)
+...+.+. .........+.+++.+...++.+|+|+| ++...+.++..+......+.+
T Consensus 264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk--~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK--KLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH--HHHHHHHHHHHHHHHHHHhhc
Confidence 65555544 3444555666777789999999999999 455556555555555544443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-14 Score=128.27 Aligned_cols=130 Identities=11% Similarity=0.024 Sum_probs=97.3
Q ss_pred chhhHHHHHHHHHHHHHhhh---hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHH
Q 019522 37 SFKNNYLLVYSLMMAGDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI 113 (340)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~ 113 (340)
.++|..+..........+.. +.+.|.+.+++|+|..|++.+.+.+...+ ..+++.|++.||+|+|+++.++.++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34455555555554444433 45588999999999999999887765533 566688999999999999999999999
Q ss_pred HHh-hhhcc------chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHH
Q 019522 114 LSC-ITKHS------PQYKILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFS 168 (340)
Q Consensus 114 ~~~-~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~ 168 (340)
++. +++++ ++++.+.+.|++.|+|.+...+.... .+.++ ++||...++.....+
T Consensus 103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~-~i~~~Fp~~RG~a~Gi~~~~~g 165 (591)
T PTZ00207 103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVV-TVLSVFPSNRGAVVAIMKTFTG 165 (591)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhChhhhHHHHHHHHHHHH
Confidence 988 66665 68999999999999999888776655 55555 677775555555444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-12 Score=116.56 Aligned_cols=244 Identities=16% Similarity=0.219 Sum_probs=135.8
Q ss_pred hHH-HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccc----ccchHHHH-HHHHHHHHHh-hhhccch------
Q 019522 57 GPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRACV-TYCLTYILSC-ITKHSPQ------ 123 (340)
Q Consensus 57 ~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Grr~~l~-~~~~~~~~~~-~~~~~~~------ 123 (340)
..+ ...+.+..|+++..+|.++...-+...+..|+.|.++|| +||||..+ .+.+..+++. ++...|+
T Consensus 29 ~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~ 108 (460)
T PRK11462 29 MLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGK 108 (460)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchH
Confidence 444 344456789999999999999999999999999999995 78877665 4556667666 4333332
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcc----ccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc-ccCCCcc
Q 019522 124 YKILMIGRILGGIATSLLFSAFESWLVAE----HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPV 198 (340)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~----~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~-~~~~~~~ 198 (340)
...+.+..++..++.........+ +..| .++|.+..++.....+ +|..+++.+...+.....+ ....+|+
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~a-l~~~lt~d~~eRt~l~s~r~~~~~----iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCA-LGGVITNDPTQRISLQSWRFVLAT----AGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHH-HHHHhcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 345555666667776666555444 4333 3777775555554444 3333333333332222211 0012233
Q ss_pred hhhhhHHHHHHHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhh--HHHHHHhhcccccc
Q 019522 199 APFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGS--MYTFVFLWTPALSP 276 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 276 (340)
....+.+++..+.........+|+.++++++. +.++..+..++||.++.+.....+.... .......+...|.
T Consensus 184 ~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~----~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~- 258 (460)
T PRK11462 184 GGIAVLSVVAFMMLAFCFFTTKERVEAPPTTT----SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI- 258 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeccCCCccCC----CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-
Confidence 33334444443443333233344322221111 1334455677888776654332222221 1111233333333
Q ss_pred CCCCchh--hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 277 NDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 277 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
.+.+. +.......++.+++.++++++.||+++|+
T Consensus 259 --~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~ 294 (460)
T PRK11462 259 --LGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT 294 (460)
T ss_pred --cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 22222 34455667788889999999999999885
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-18 Score=156.43 Aligned_cols=240 Identities=21% Similarity=0.259 Sum_probs=141.8
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccc---hHHHHHHHHHHHHHHhhhhhhhhhhh
Q 019522 73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP---QYKILMIGRILGGIATSLLFSAFESW 148 (340)
Q Consensus 73 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~ 148 (340)
+.++..+..+++..+++++.|.++||+|||+.+..+..+..++. +.++++ |++.+.++|++.|++.|...+....
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~- 125 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI- 125 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 45788888999899999999999999999999999999999988 888888 9999999999999999999888755
Q ss_pred hhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccc---
Q 019522 149 LVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN--- 222 (340)
Q Consensus 149 ~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (340)
++.|. ++|++.....+.... +|..++..++...... . .++.||..+....+..++..+.. ...||+
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~----~G~~~~~~~~~~~~~~-~--~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~w 197 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWA----LGILLASLIGYIVSYY-S--DNWGWRILLIFGAIPSLLVLLLR-FFLPESPRW 197 (451)
T ss_pred ccccccccccccccccccccccc----cccccccccccccccc-c--ccccccccccccccccccccccc-cccccccce
Confidence 88887 666664444433333 3333333333222111 1 12456676766665554433333 344443
Q ss_pred ---cCCCccchHHHHH-----------------HHH------HHHHHhhchh----HHHHHHHHHHhhhhHHHHHHhhcc
Q 019522 223 ---YGDPSESKDLLTQ-----------------FRG------AAVAIASDEK----IALLGAIQSLFEGSMYTFVFLWTP 272 (340)
Q Consensus 223 ---~~~~~~~~~~~~~-----------------~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 272 (340)
+++.+|+++..++ .++ .+++++++++ .........+.+...+.....+.+
T Consensus 198 L~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 277 (451)
T PF00083_consen 198 LLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSP 277 (451)
T ss_pred ecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccc
Confidence 2222222111111 000 1223444422 222222222222333333344455
Q ss_pred ccccCCCCchhh-HHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHH
Q 019522 273 ALSPNDEEIPHG-FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSS 324 (340)
Q Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 324 (340)
.+.++. +.+.. .......+...++.+++..+.||+|||+ .+..+....+
T Consensus 278 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~--~~i~~~~~~~ 327 (451)
T PF00083_consen 278 SIFENA-GISNSFLATLILGLVNFLGTLLAIFLIDRFGRRK--LLIIGLLLMA 327 (451)
T ss_pred cccccc-cccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 554443 33333 2233445556677778889999999995 3434433333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-12 Score=118.96 Aligned_cols=256 Identities=15% Similarity=0.036 Sum_probs=143.6
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccccc-----chHHHHHHHHHHH-HHh-hhhccchHHHH-HH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTYI-LSC-ITKHSPQYKIL-MI 129 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-----rr~~l~~~~~~~~-~~~-~~~~~~~~~~l-~~ 129 (340)
+..|.+.+++|+|+++++...+...+...+ .+++|+++||++ ||+.++++.++.+ +.. ..+..++.... .+
T Consensus 47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~ 125 (468)
T TIGR00788 47 PLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAA 125 (468)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 446677778999999998888887775544 667999999997 7777777776663 443 34444554444 44
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 130 GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
..++.+++.+...+...+ +..|. ++++...+.....+. ....|..+|+.+++. +.+..+ |+..|++.+.+
T Consensus 126 ~~~l~~~~~a~~dv~~da-~~~e~~~~~~~~~~~~~s~~~~-~~~~G~~vg~~l~G~----l~~~~~--~~~~f~~~a~l 197 (468)
T TIGR00788 126 FIFLAALAKALYDVLVDS-LYSERIRESPSAGPSLVSWMWG-ASATGGLISSLLGGP----LLDKTL--TRILFLITAAL 197 (468)
T ss_pred HHHHHHHHHHHHHHhHHH-HHhhhhhcCCCcCCCeeeHHHH-HHHHHHHHHHHHHHH----HHHhcC--cchHHHHHHHH
Confidence 788999999998888877 76665 233222222222222 122344444444444 444344 44677776666
Q ss_pred HHHHHHHHhcccccccC--CCccch-----------H---HHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhc
Q 019522 208 LAIGMVIILSSWTENYG--DPSESK-----------D---LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT 271 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~~~--~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (340)
.++..... ...+|+++ +++..+ . ..++..+...+.+++|..+.......+........ ....
T Consensus 198 ~ll~~~~~-~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~-~~~~ 275 (468)
T TIGR00788 198 LLLQLFVS-NLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA-SGSV 275 (468)
T ss_pred HHHHHHHH-HhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC-Ccee
Confidence 55553322 44555431 111100 0 01111122334566777766433333311111111 1111
Q ss_pred cccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 019522 272 PALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS 326 (340)
Q Consensus 272 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 326 (340)
-.+.++..|.++ +......+++.+++....+++.+|++.| +.+.....+..++
T Consensus 276 f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r--~~l~~~~~l~~~~ 331 (468)
T TIGR00788 276 FCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR--LLFGVTTLLYTLS 331 (468)
T ss_pred EEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHHH
Confidence 113334556655 4555666788899999999999999877 4555554444443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.1e-13 Score=118.35 Aligned_cols=162 Identities=13% Similarity=0.123 Sum_probs=104.1
Q ss_pred hHHHHHHHHhhCCCh--------hhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc-c---h
Q 019522 57 GPYVYYLYSTYGFGK--------GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-P---Q 123 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~--------~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~-~---~ 123 (340)
..+.|...++.|.++ .+.+...+...+...++..+.|+++||+|||+++..+.++.+++. +.... + +
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~ 307 (418)
T TIGR00889 228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG 307 (418)
T ss_pred HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence 355566667776554 556788888888788888899999999999999999999888875 44442 2 2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC----CC
Q 019522 124 YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS----LG 196 (340)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~----~~ 196 (340)
.+.+++.+++.|++.+...+.... ++.|. ++|++..+..+ ..... +|..+++.+++++.++.+ ++
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~-~i~~~~p~~~~g~~~g~~~---~~~~~----lg~~iGp~l~G~l~~~~g~~~~~~ 379 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSV-FVEKEVPVHIRASAQGLFT---LMCNG----FGSLLGYILSGVMVEKMFAYGTFD 379 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHH---HHHHh----hHHHHHHHHHHHHHHHhccccCCc
Confidence 456777899999998887776645 66665 34444333322 12223 344444444444444332 45
Q ss_pred cchhhhhHHHHHHHHHHHHhcccccccCCC
Q 019522 197 PVAPFDAAACFLAIGMVIILSSWTENYGDP 226 (340)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (340)
|+..|.+.+++.++..++.....+|++++.
T Consensus 380 ~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 380 WQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 667777666665555555555556554433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-12 Score=109.14 Aligned_cols=284 Identities=18% Similarity=0.204 Sum_probs=163.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHH
Q 019522 35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (340)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~ 110 (340)
-.++||.+++.+.+....++++ ++...+...-|| +....-+....+.+.+...+..+-|+.||+|-|....++..
T Consensus 39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV 117 (480)
T ss_pred cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence 4567788888888888887766 354555555677 66666678888888888899999999999999999999999
Q ss_pred HHHHHh-h--hhccc----hHH--HHHHHHHHHHHHhhhhhhhhhhhhhcc-c---cccchhhHHHHHHHHHHHHhhhhH
Q 019522 111 TYILSC-I--TKHSP----QYK--ILMIGRILGGIATSLLFSAFESWLVAE-H---NKRGFEQQWLSITFSKAIFLGNGL 177 (340)
Q Consensus 111 ~~~~~~-~--~~~~~----~~~--~l~~~r~l~G~~~~~~~~~~~~~~i~~-~---~~r~~~~~~~~~~~~~~~~~g~~i 177 (340)
..+++. + .+..+ +++ ....+..+.+.++-...... + -+++ + ++|..+.. ....+.-+|.++
T Consensus 118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lP-s-kiA~~WF~~~qra~A~~----~~v~~n~LGvav 191 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLP-S-KIAAVWFPPDQRAIATV----LGVMGNPLGVAV 191 (480)
T ss_pred HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccc-c-HHHHhhCCcchhhhhhh----HHHhcchHHHHH
Confidence 999977 3 23222 333 55566677666655554432 2 2333 2 45544222 222222233334
Q ss_pred HHHHHHhhhhhh--hcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHH---HHHHHHHHHHhhchhHHHH
Q 019522 178 VAILSGLFGNLL--VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLL---TQFRGAAVAIASDEKIALL 252 (340)
Q Consensus 178 g~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 252 (340)
|.++.|.+.+.- .+...|.-...|+....+..+.+.+.....+++++.+....... ....+..++.++|+++..+
T Consensus 192 g~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il 271 (480)
T KOG2563|consen 192 GFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIIL 271 (480)
T ss_pred HhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHH
Confidence 444444433321 11112222223443333333333222222222211111111111 1245567788999999988
Q ss_pred HHHHHHhhhhHHHHHHhhccccccCCC-CchhhHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 019522 253 GAIQSLFEGSMYTFVFLWTPALSPNDE-EIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS 326 (340)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 326 (340)
.....+..+..+.......+..-.+++ +...|.......++++++..+.|.+.||.++-+ ....+......+.
T Consensus 272 ~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk-~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 272 AICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK-LTTLVLYLFALVG 345 (480)
T ss_pred HHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHH
Confidence 777777666666543322212222222 245678888889999999999999999987654 4444444443333
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=112.87 Aligned_cols=192 Identities=12% Similarity=0.029 Sum_probs=117.0
Q ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc----
Q 019522 120 HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---- 192 (340)
Q Consensus 120 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~---- 192 (340)
...+++.+++.-++.|.|.+..++..++ ++++. +++.++.++.+..++ +|..++|.+...+...
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~-~v~~~~~~~~~~~~l~~~~~~~~--------~G~~~gP~i~~~~i~~~~~~ 76 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANP-YVSILGPIETAASRLALTQAFNK--------LGTTVAPLFGGSLILSGAGD 76 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHH-HHHHHCCcchHHHHHHHHHHHhh--------hHHHHHHHHHHHHHhcCCcc
Confidence 4578999999999999999999999988 87654 566677777777776 3344444444433311
Q ss_pred ----------cCCCcchhhhhHHHHHHH-HHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhh
Q 019522 193 ----------FSLGPVAPFDAAACFLAI-GMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEG 261 (340)
Q Consensus 193 ----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (340)
..++|+.++++.+.+..+ ...+.....||.+++++++.+..+. .+.+..+|+|+.+...+..++ +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~f~-yv 153 (310)
T TIGR01272 77 LSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDT--TQKTSAFQFTHLVLGALGIFV-YV 153 (310)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccc--cchhhHHhhHHHHHHHHHHHH-HH
Confidence 014567788755444333 3333323444433222221111111 112245677777765444444 44
Q ss_pred hHHHHHHhhccccccCC--CCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 019522 262 SMYTFVFLWTPALSPND--EEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV 325 (340)
Q Consensus 262 ~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 325 (340)
........|.+.|+++. .+.++ +...+.+..+.++|+++.+++.||+++|+ .+........+
T Consensus 154 g~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~--~l~~~~~l~~~ 220 (310)
T TIGR01272 154 GAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR--YLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHH
Confidence 34444588999999643 45554 45667788889999999999999999874 44444443333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-11 Score=108.62 Aligned_cols=141 Identities=19% Similarity=0.172 Sum_probs=91.2
Q ss_pred hHHHHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc-cchHHHHHHHHHHHHHh-hhhccc-hHHHHHHHHH
Q 019522 57 GPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRI 132 (340)
Q Consensus 57 ~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-~~~~~~-~~~~l~~~r~ 132 (340)
..++|.+ .+++|+++.+.+.+.........+..++.|+++||+ ||||++..+.++.+++. +.+..+ +...+.+...
T Consensus 29 ~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~ 108 (493)
T PRK15462 29 RALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLA 108 (493)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 3455555 456899999999998888887888888999999999 99999999999998887 554432 2233444444
Q ss_pred HHHHHhhhhhhhhhhhhhccc--c---ccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 133 LGGIATSLLFSAFESWLVAEH--N---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~--~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
+.++|.|...+...+ +++|. + +|+.. ++..+..++ +|..++|.+.+++.+..+|+ ..|.+.++.
T Consensus 109 li~iG~G~~~~~~~a-lv~elfp~~~~~R~sg-------f~i~Y~~~n-lG~~iap~l~g~L~~~~Gw~--~~F~iaaig 177 (493)
T PRK15462 109 IIVCGYGLFKSNVSC-LLGELYEPTDPRRDGG-------FSLMYAAGN-VGSIIAPIACGYAQEEYSWA--MGFGLAAVG 177 (493)
T ss_pred HHHHhcccccccHHH-HHHHHCCCCCccccce-------ehHHHHHHH-HHHHHHHHHHHHHHhhhChH--HHHHHHHHH
Confidence 455566665555544 66664 1 34332 222222233 56666666666666555555 556655443
Q ss_pred H
Q 019522 208 L 208 (340)
Q Consensus 208 ~ 208 (340)
.
T Consensus 178 m 178 (493)
T PRK15462 178 M 178 (493)
T ss_pred H
Confidence 3
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-11 Score=108.94 Aligned_cols=147 Identities=12% Similarity=0.063 Sum_probs=94.3
Q ss_pred HHHHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 58 PYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 58 ~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
...|.+ .+++|.++.+.+.+.+.......+..++.|+++||+|||+.+..+.....+.. .....++.+.+++.+++.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445554 45789999999988777767677778899999999999998877766555544 4445677777788888888
Q ss_pred HHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
++.+...+.... +..|. ++|+...+.... ...+|..+|+.+++. +.++.+ |+..+....+..++..+
T Consensus 317 ~~~g~~~~~~~~-~~~~~~p~~~g~~~~~~~~----~~~lg~~~g~~l~G~----i~~~~g--~~~~~~~~~~~~~~~~~ 385 (393)
T PRK15011 317 IYIGILGGIGML-YFQDLMPGQAGSATTLYTN----TSRVGWIIAGSLAGI----VAEIWN--YHAVFWFALVMIIATLF 385 (393)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCcchHHHHHHH----HHHHHHHHHHHHHHH----HHHHhh--hHHHHHHHHHHHHHHHH
Confidence 877766555433 55554 445553333322 333444444444444 444344 44667666666555555
Q ss_pred HH
Q 019522 214 II 215 (340)
Q Consensus 214 ~~ 215 (340)
..
T Consensus 386 ~~ 387 (393)
T PRK15011 386 CL 387 (393)
T ss_pred HH
Confidence 44
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-10 Score=103.05 Aligned_cols=236 Identities=14% Similarity=0.115 Sum_probs=138.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHH-Hh-hhhc-cchHH-HHHHHHHHHHHHhhhhhhhhhhhhh
Q 019522 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKH-SPQYK-ILMIGRILGGIATSLLFSAFESWLV 150 (340)
Q Consensus 75 g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-~~~~-~~~~~-~l~~~r~l~G~~~~~~~~~~~~~~i 150 (340)
+...+...+...+..|+.|.++|+-|+||.++....+.+. ++ ...+ .++.+ ...+..++.-++.+......++ ++
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna-~L 151 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA-YL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 4566777777888999999999999988877766555544 44 4444 34433 3344444555555555555544 55
Q ss_pred ccc---ccc--------------------------chhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh---cc---cCC
Q 019522 151 AEH---NKR--------------------------GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV---DS---FSL 195 (340)
Q Consensus 151 ~~~---~~r--------------------------~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~---~~---~~~ 195 (340)
.|. +++ ++ . .+.+...|+ +|.++.-.+.-.+. +. ..+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v----S~~G~a~Gy-~G~~v~l~i~l~~~~~~~~~~~~~~ 223 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGR---V----SGLGWALGY-IGGLVALLISLLLVISPGSTASNTW 223 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhch---h----HHHHHHHHH-HHHHHHHHHHHHHHHcCCCccccch
Confidence 443 222 22 2 222222333 23332222211111 11 123
Q ss_pred CcchhhhhHHHHHHHHHHHHhcccccccC-CCcc-ch----HHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHh
Q 019522 196 GPVAPFDAAACFLAIGMVIILSSWTENYG-DPSE-SK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269 (340)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (340)
..|..+...++..++..+......|++++ +..+ .. ...++..+..+++.|+|....+.+..++...+... +..
T Consensus 224 ~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~t-i~~ 302 (477)
T PF11700_consen 224 AIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNT-IIS 302 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHH
Confidence 44666666666655555554445555433 1111 11 22345556677788888888887777776666655 477
Q ss_pred hccccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 019522 270 WTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVF 320 (340)
Q Consensus 270 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 320 (340)
....|.++..+.+.. .......+.+++|.++.+++.||+|.|+.+++....
T Consensus 303 ~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l 356 (477)
T PF11700_consen 303 FAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL 356 (477)
T ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 778888888888775 344556788999999999999999998423333333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-11 Score=104.78 Aligned_cols=157 Identities=11% Similarity=0.108 Sum_probs=111.2
Q ss_pred HHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHH
Q 019522 50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILM 128 (340)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~ 128 (340)
........++.|.+.+|.|.++.++|.+.....+...+...+.|++.||+|+|+.+..+.+...+.. +.++.++.+.++
T Consensus 218 ~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T TIGR00902 218 QGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIF 297 (382)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 3333333456677778899999999999888888788888899999999999999999999999988 778899999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHH
Q 019522 129 IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (340)
Q Consensus 129 ~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (340)
+.+++.|++.+...+.... ++.+. ++... +..++.++ ..+.++|..+++.+++++.++.+. ..|...+.+.
T Consensus 298 ~~q~l~g~~~~~~~~~~~~-~i~~~-~~~~~-~~~q~~~~---~~~~g~g~~~g~~~~G~l~~~~g~---~~~~~~~~~~ 368 (382)
T TIGR00902 298 LLQILHCGTFAVCHLAAMR-YIAAQ-PGSEI-AKLQALYN---ALAMGGLIAIFTAFAGFIYPTLGA---GTFVFMAIIA 368 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhC-CHhhH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHH
Confidence 9999999999999988766 77665 22221 12222222 223345555566666666555442 3355555555
Q ss_pred HHHHHHH
Q 019522 209 AIGMVII 215 (340)
Q Consensus 209 ~~~~~~~ 215 (340)
++..++.
T Consensus 369 ~~~~~~~ 375 (382)
T TIGR00902 369 AAAFFLI 375 (382)
T ss_pred HHHHHHH
Confidence 5544443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.8e-12 Score=112.66 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=96.2
Q ss_pred hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhh
Q 019522 66 TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSA 144 (340)
Q Consensus 66 ~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (340)
+.+.+..+.|.+.+...+...++.++.|++.||+|+|+.+..+.++.+++. +.++.++.+.+...+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888887777888899999999999999999988888877 6678888888888999999988777665
Q ss_pred hhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 145 FESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 145 ~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
... ++.|. .+|.+. . .+..+.+.+..+|..+++.+.+++.+..|| +..|...+.+.++...+.
T Consensus 336 ~~~-~~~~~~~~~~~a-~----~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~--~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 336 VFK-YITLNFDVRLSA-T----IYLVGFQFAKQLGAVFLSTLAGNLYDSIGF--QGTYLILGGIVLLFTLIS 399 (420)
T ss_pred HHH-HHHHHcCcccee-e----eeeehHHHHHHHHHHHHHHHHHHHHHhhCc--hHHHHHHHHHHHHHHHHH
Confidence 544 55554 222111 1 111112223345666666666666665554 466766555554444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-11 Score=105.01 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=94.6
Q ss_pred HHHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHH
Q 019522 59 YVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGI 136 (340)
Q Consensus 59 ~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~ 136 (340)
..|.+ .+++|.++.+.+.+.........+..++.|++.||+|||+.+..+.+...+.. ...+.++.+.+...+++.|+
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 300 (375)
T TIGR00899 221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAI 300 (375)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 46789999999988777666666777789999999999999888777655554 44556777778888899999
Q ss_pred Hhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHH
Q 019522 137 ATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI 214 (340)
Q Consensus 137 ~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (340)
+.+...+.... +..|. ++++. ..+..+.... +|..+++.+.+.+.+..+| +..+...++..++....
T Consensus 301 ~~g~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~----~g~~~g~~~~g~~~~~~g~--~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 301 FIGILAGIGML-YFQDLMPGRAGA----ATTLYTNTGR----VGWIIAGSVGGILAERWSY--HAVYWFAIVMLIVALFC 369 (375)
T ss_pred HHHHHHHHHHH-HHHHhCcchhhH----HHHHHHHHHH----HHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHH
Confidence 88887766545 55554 23333 2222332333 4444444444444444444 46676666665555544
Q ss_pred H
Q 019522 215 I 215 (340)
Q Consensus 215 ~ 215 (340)
.
T Consensus 370 ~ 370 (375)
T TIGR00899 370 L 370 (375)
T ss_pred H
Confidence 4
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.2e-11 Score=105.94 Aligned_cols=155 Identities=20% Similarity=0.146 Sum_probs=101.2
Q ss_pred HHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 58 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.+.|.+.++ +|.++.+.|.+.+...++..++.++.|++.||.++++.+..+..+.+++. +..+.++.....+..++.|
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 446667676 89999999999888888888888899999999888888888877777776 6667888877788888899
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+...+ ++.|. +.|++..+.... ....|..+|+.+.+.+.+. .+ ....+...+...++..
T Consensus 324 ~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~----~~~~g~~~g~~l~G~l~~~----~g--~~~~~~~~~~~~~~~~ 392 (417)
T PRK10489 324 YLSAISSLLQYT-LLQTQTPDEMLGRINGLWTA----QNVTGDAIGAALLGGLGAM----MT--PVASASASGFGLLIIG 392 (417)
T ss_pred HHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHH----HHhhhHhHHHHHHHHHHHH----hc--hhhHHHHHHHHHHHHH
Confidence 888776665544 55554 446664444333 3334454555555554443 33 3344554444433333
Q ss_pred HHHhccccccc
Q 019522 213 VIILSSWTENY 223 (340)
Q Consensus 213 ~~~~~~~~~~~ 223 (340)
.......++.+
T Consensus 393 ~~~~~~~~~~~ 403 (417)
T PRK10489 393 VLLLLVLGELR 403 (417)
T ss_pred HHHHHhccccc
Confidence 33323334433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=100.78 Aligned_cols=152 Identities=26% Similarity=0.299 Sum_probs=107.7
Q ss_pred hhhhHHHHHHHHhhC----CChhhhHHHHHHHHhhhhhhhhhhhhccccc-cchHHHHHHHHHHHHHh-hhhcc--chHH
Q 019522 54 WLQGPYVYYLYSTYG----FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHS--PQYK 125 (340)
Q Consensus 54 ~~~~~~~~~~~~~~g----~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-~~~~~--~~~~ 125 (340)
++..++..++..+++ +|+++...+++.+...-.....+.|+++||+ |+|+.+..+.++..++. +.+.. .+..
T Consensus 39 GmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~ 118 (498)
T COG3104 39 GMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPG 118 (498)
T ss_pred hhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 344677777888877 9999988777777766777788899999997 99999999999999998 66665 4688
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccc----cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhh
Q 019522 126 ILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPF 201 (340)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~ 201 (340)
.+.++..+.++|.|..-+...+ ++.|. ++| +. ..++..+. +..+|..++|.+.+++.+..+|+ ..|
T Consensus 119 gl~i~L~~I~iG~Gl~K~NiS~-llg~ly~~~Dpr--rD----~gFt~fY~-~iNiGsl~~p~i~~~~~~~~g~~--~gF 188 (498)
T COG3104 119 GLYIGLALIIVGTGLFKPNISS-LLGELYPKDDPR--RD----GGFTLFYM-GINIGSLIAPIITGLLAINYGWH--VGF 188 (498)
T ss_pred HHHHHHHHHHhccccccccHHH-HHHHhcCCCCcc--cC----CCccEEEE-EeehHHHHHHHHHHHHHHhhCHH--HHH
Confidence 8999999999999999888766 77764 222 11 11222222 22366666777777666666655 556
Q ss_pred hhHHHHHHHHHHHH
Q 019522 202 DAAACFLAIGMVII 215 (340)
Q Consensus 202 ~~~~~~~~~~~~~~ 215 (340)
...++-....++..
T Consensus 189 ~~aavGm~~gl~~f 202 (498)
T COG3104 189 GLAAVGMIIGLVIF 202 (498)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655544444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=111.18 Aligned_cols=281 Identities=15% Similarity=0.143 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-
Q 019522 42 YLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC- 116 (340)
Q Consensus 42 ~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~- 116 (340)
++.+..+....+++. ...+..+.+.++++.++.|++.+.+-++..+...+..+...|..|-|.+-.++++++++.
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 333444444444433 344778889999999999999888888777888889999999999999999999998876
Q ss_pred hhhcc--------------------c-----------------------------h--HH-HHHHHHHHHHHHhhhhhhh
Q 019522 117 ITKHS--------------------P-----------------------------Q--YK-ILMIGRILGGIATSLLFSA 144 (340)
Q Consensus 117 ~~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~~~~~ 144 (340)
+.++- + + ++ .++++.++.|+|....++.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 43321 0 0 12 5677899999999999999
Q ss_pred hhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc---------cCCCcchh----hhhHHHHHHHH
Q 019522 145 FESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---------FSLGPVAP----FDAAACFLAIG 211 (340)
Q Consensus 145 ~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~---------~~~~~~~~----~~~~~~~~~~~ 211 (340)
..+ |+-|..++....- ..+.......+|.++|.+++++....-.+. .+-||.-. |++.+.+.++.
T Consensus 258 Gis-YiDDnvk~~~Spl-Ylgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 258 GIS-YIDDNVKKKNSPL-YLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred CCc-cccccccccCCcH-HHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 988 9998833332222 223333345556666666666665543332 12244333 44445555444
Q ss_pred HHHHhcccccccCCCc-------------------cchH---HHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHh
Q 019522 212 MVIILSSWTENYGDPS-------------------ESKD---LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269 (340)
Q Consensus 212 ~~~~~~~~~~~~~~~~-------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (340)
.+.++ ..|.+.++++ +..+ ..++..+..+.+++||.++...+...+ ....+....+
T Consensus 336 a~p~f-~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~-~~~~~~G~~t 413 (735)
T KOG3626|consen 336 AVPLF-FFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVI-ESLAITGYIT 413 (735)
T ss_pred HHHHH-hCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHhhHHH
Confidence 44442 3332222110 0111 123344456778899988887665554 4444444689
Q ss_pred hccccccCCCCchhhHHH----HHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 019522 270 WTPALSPNDEEIPHGFIF----ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS 326 (340)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 326 (340)
++|.|++++++.+++.+. .+...+..+|.+++|++.+|+..+.+....+......+.
T Consensus 414 FlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~ 474 (735)
T KOG3626|consen 414 FLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS 474 (735)
T ss_pred hhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence 999999999999886333 233344678889999999999766534444444444333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-11 Score=105.94 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=95.0
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchH--HHHHHHHHHH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQY--KILMIGRILG 134 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~--~~l~~~r~l~ 134 (340)
...+.+.+++|.++.+.+.+.+...+...++.++.|++.||+|||+.+..+.....++. +..+.++. ..+....++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 44555668889998888988888888888889999999999999999999888887776 55555432 3344566778
Q ss_pred HHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHH
Q 019522 135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (340)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 210 (340)
|++.+...+.... ++.|. ++|+...+....... +|..+++.+.+.+.++.+|+ ..|.+.+++.++
T Consensus 306 g~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~--------~g~~~~~~~~g~l~~~~g~~--~~f~~~~~~~~~ 373 (377)
T TIGR00890 306 FFTWGGTISLFPS-LVSDIFGPANSAANYGFLYTAKA--------VAGIFGGLIASHALTEIGFE--YTFIVTGAFALT 373 (377)
T ss_pred HHHhccchhccHH-HHHHHhhhhhhhhHhHHHHHHHH--------HHHHHHHHHHHHHHhhhchh--hHHHHHHHHHHH
Confidence 8887776655544 55554 556664433333322 44555555555555555554 566665555444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-11 Score=103.93 Aligned_cols=185 Identities=20% Similarity=0.140 Sum_probs=122.0
Q ss_pred ccccchhhHHHHHHHHHHHHHhhh----hHH-HHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccc-hHHH
Q 019522 33 SAFNSFKNNYLLVYSLMMAGDWLQ----GPY-VYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRAC 105 (340)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-r~~l 105 (340)
.+-++.+|+.+.++.+.++....+ .|. .|++.+ |.+.+.+..|++.+...++..+.++..|+...|.+. |+.+
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl 105 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL 105 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence 344566777777777777776666 233 444444 578888888999999999999999999999999997 8888
Q ss_pred HHHHHHHHHHh-hh-h--c-cc-hHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhh
Q 019522 106 VTYCLTYILSC-IT-K--H-SP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNG 176 (340)
Q Consensus 106 ~~~~~~~~~~~-~~-~--~-~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ 176 (340)
+.+.++..++. +- + . .+ ..+.++++|++.|+|.+.. ....+ |+++. ++|.+..+.... +..+|..
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~-Y~a~~s~~~dR~rA~a~~~~----~~vlg~i 179 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRA-YIADASTVEDRPRAFAATSG----GFVLGII 179 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHH-HHHhccCccchHHHHHHhhh----HHHHHHH
Confidence 99999998887 33 2 2 33 5678899999999998776 34445 77764 566664443333 3444555
Q ss_pred HHHHHHHhhhhhhhccc------CCC-cchhhhhHHHHHHHHHHHHhccccccc
Q 019522 177 LVAILSGLFGNLLVDSF------SLG-PVAPFDAAACFLAIGMVIILSSWTENY 223 (340)
Q Consensus 177 ig~~~~~~~~~~l~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (340)
+|+.+++.+++...+.. .|+ +..+-++.+++.++..+++....+|..
T Consensus 180 lGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 180 LGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred HhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 55555555544422111 111 134456666666666666655555543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-10 Score=102.83 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=89.8
Q ss_pred HHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHHHh
Q 019522 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIAT 138 (340)
Q Consensus 61 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~~ 138 (340)
|.+.++.|.+..+.+.+.+...+++.++.++.|+++||+|||+... +..+..++. +....++.+.+.+..++.|++.
T Consensus 230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~ 308 (390)
T PRK03545 230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI 308 (390)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3344557999999998888888888888899999999999887544 444444433 3345677778888888999987
Q ss_pred hhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 139 SLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 139 ~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
+...+.... .+.|. ++|++..+. ++.....|..+|+.+ ++.+.++.+++ ..++..+.+.++.....
T Consensus 309 ~~~~~~~~~-~~~~~~~~~~~~~~g~----~~~~~~~g~~~G~~~----~G~~~~~~g~~--~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 309 MCIGLAMQV-KVLKLAPDATDVAMAL----FSGIFNIGIGAGALL----GNQVSLHLGLS--SIGYVGAALALAALVWS 376 (390)
T ss_pred hcchHHHHH-HHHHhCCCcHHHHHHH----HHHHHHHHHHHHHHH----HHHHHhccChh--HHHHHHHHHHHHHHHHH
Confidence 666555444 44443 344443333 333333444444444 44444444444 66766666665555544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.5e-11 Score=105.01 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=96.0
Q ss_pred hHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHH
Q 019522 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG 134 (340)
Q Consensus 57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~ 134 (340)
..+.|.+. +++|+|..+.+.+.+...++..++.++.|+++||++||+.+.....+..+.. +....++...+.+..++.
T Consensus 225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGL 304 (394)
T ss_pred HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34567666 5689999999999888888888888999999999999999988777766655 555667776677777888
Q ss_pred HHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHH
Q 019522 135 GIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (340)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 211 (340)
|++.+..++...+ +..|. ++++...+. .. . ...+|..++|.+.+++.+..+++ ..++..+++..++
T Consensus 305 G~~~~~~~~~~~~-~~~~~~~~~~~~~~g~----~~---~-~~~~g~~i~p~~~G~l~~~~g~~--~~~~~~~~~~~~~ 372 (394)
T PRK03699 305 GFFSSAIYTTIIT-LGSQQTKVASPKLVNF----IL---T-CGTIGTMLTFVVTSPIVAHFGLQ--AALLTANGLYAVV 372 (394)
T ss_pred HHHHHHHHHHHHH-HHHHHccCCCHHHHHH----HH---H-hhhHHHHHHHHHHHHHHHHhCch--hhhhhhHHHHHHH
Confidence 8887777676544 44443 222232111 11 1 22356666666666666655654 4555544444333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=104.24 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=95.7
Q ss_pred hHHHHHHHHhhCCChhh----hHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGE----IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR 131 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~----~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r 131 (340)
.+..|.+.++.+.+..+ .+.+.....++..+..+..|+++||+|||+.+..+.....++. ...+.++.+.+.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR 318 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 45566665654433333 2444445556666777889999999999999998888777766 556677888888899
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHH
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (340)
++.|++.+...+...+ .+.+. +++++..+....... +|..+|+.+++ .+.+..+ |+..|.+.+++.
T Consensus 319 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~----~g~~~gp~~~G----~l~~~~g--~~~~f~~~~~~~ 387 (408)
T PRK09874 319 FLLGAADGALLPAVQT-LLVYNSSNQIAGRIFSYNQSFRD----IGNVTGPLMGA----AISANYG--FRAVFLVTAGVV 387 (408)
T ss_pred HHHHhhhHhhHHHHHH-HHHHhCCcccceeeehHHHHHHH----HHHHhhHHHHH----HHHhhcc--hhHHHHHHHHHH
Confidence 9999999988777655 44332 455665444443333 34444444444 4444444 456777777666
Q ss_pred HHHHHHH
Q 019522 209 AIGMVII 215 (340)
Q Consensus 209 ~~~~~~~ 215 (340)
++..+..
T Consensus 388 l~~~~~~ 394 (408)
T PRK09874 388 LFNAVYS 394 (408)
T ss_pred HHHHHHH
Confidence 6665555
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=103.07 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=92.8
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.++.|.+.++.|.+ +.+.......++..++.++.|++.||+|+|+.+..+..+.+++. +..+.++.+.+++..++.|
T Consensus 236 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 313 (399)
T PRK05122 236 ATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45566666666663 34555555555566677889999999999999988888877776 6666778888888899999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+..++.... ...|. ++|++..+.. +.....|..+++ .+.+.+.++.+ |+..+...+...++..
T Consensus 314 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~----~~~~~~g~~~~~----~~~g~l~~~~g--~~~~~~~~~~~~~~~~ 382 (399)
T PRK05122 314 FGFSLVFPALGV-EAVKRVPPQNRGAALGAY----SVFLDLSLGITG----PLAGLVASWFG--YPSIFLAAALAALLGL 382 (399)
T ss_pred HhHHHHHHHHHH-HHHHhCCHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHcC--HHHHHHHHHHHHHHHH
Confidence 999888776544 44443 4555533333 323333333333 34444444444 4456666655555554
Q ss_pred HHH
Q 019522 213 VII 215 (340)
Q Consensus 213 ~~~ 215 (340)
...
T Consensus 383 ~~~ 385 (399)
T PRK05122 383 ALT 385 (399)
T ss_pred HHH
Confidence 444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-10 Score=100.31 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=102.0
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
..+.|.+.+|.|.++.+.|.+.+...+...+...+.|++.||+|+|+.+..+.+..+++. +.+..++.+.+++..++.|
T Consensus 225 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 304 (382)
T PRK11128 225 YGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHC 304 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345566667899999999998888888777888899999999999999999988888877 6677888898899999999
Q ss_pred HHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
++.+...+.... ++.+.. +++.... .+..+ .....+|..+++.+++.+.+..++ ..++..+.+.++.+...
T Consensus 305 ~~~~~~~~~~~~-~~~~~~-~~~~~~~-~~~~~---~~~~~~g~~ig~~i~G~l~~~~g~---~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 305 GTFTVCHLAAMR-YIAARP-GSEVIRL-QALYS---ALAMGGSIAIMTVLSGFLYQHLGA---GVFWVMALVALPALFIR 375 (382)
T ss_pred HHHHHHHHHHHH-HHHHCC-HhhhHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHH
Confidence 998887776655 555542 2221121 22221 122334445555555555555443 34555555555444444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-10 Score=100.83 Aligned_cols=161 Identities=14% Similarity=0.092 Sum_probs=94.9
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh-ccchHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-HSPQYKILMIGRILG 134 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~-~~~~~~~l~~~r~l~ 134 (340)
..+.|.+.+++|.+..+.|...+...++..++.+..|++.||+|||+.+..+..+..++. +.. +.++...+. -++.
T Consensus 225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~ 302 (393)
T PRK09705 225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVC 302 (393)
T ss_pred HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHH
Confidence 345777778899999999999888888888999999999999999999988877776665 333 233322222 3456
Q ss_pred HHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHH
Q 019522 135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (340)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
|++.+...+.... ...+. .++....... +.. ...+. ++..+++.+.+++.++.| .+...+.+.+...++...
T Consensus 303 g~g~g~~~~~~~~-~~~~~~~~~~~~g~~~-g~~---~~~~~-~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK09705 303 GLGLGGAFPLCLL-LALDHSVQPAIAGKLV-AFM---QGIGF-IIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMI 375 (393)
T ss_pred HHhccchHHHHHH-HHHhhcCCHHHHHHHH-HHH---HHHHH-HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHH
Confidence 7777777665544 33332 2221211111 111 12222 334455555555555444 233555555554444444
Q ss_pred HHhcccccccCCC
Q 019522 214 IILSSWTENYGDP 226 (340)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (340)
......||+++++
T Consensus 376 ~~~~~~~~~~~~~ 388 (393)
T PRK09705 376 ITLRFAPARFPQL 388 (393)
T ss_pred HHHHhccccccch
Confidence 4434555554443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-10 Score=99.33 Aligned_cols=148 Identities=16% Similarity=0.137 Sum_probs=96.1
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
..++|.+.++.|.++++.|.+.+...+...+++.+.|++.||+|+|+++..+.....++. ... + ........++.|
T Consensus 220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 355788888889999999988888888888888899999999999999988887777765 322 2 223345667778
Q ss_pred HHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
++.....|...+ .+.|..++.+..+ .....+ .+..+|..++|.+.+++.++.+++ ..|.+.+.+.++.....
T Consensus 297 ~~~~~~~p~~~~-~~~~~~~~~~~~~-~~~~~~----~~~~lG~~igp~~~G~l~~~~g~~--~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 297 AAGFTLYPVAMA-WACEKVEHHELVA-MNQALL----LSYTVGSLLGPSFTAMLMQNYSDN--LLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHhHHHHHHH-HHHccCCHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHHHHH
Confidence 777766777656 5556522222111 111222 233355566666666666655554 55666655555544444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-10 Score=101.88 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=97.8
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGI 136 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~ 136 (340)
.+.|.+.++.|.++.+.+.......++..++.++.|++.||+|||+.+..+.....++. ...+.++.+.+.+..++.|+
T Consensus 241 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (406)
T PRK11551 241 NWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGL 320 (406)
T ss_pred HHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 44778888899999999999888888888999999999999999999888766666665 55666777777777788888
Q ss_pred Hhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHH
Q 019522 137 ATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (340)
Q Consensus 137 ~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
+.+...+...+ +..|. ++|++..+....... +|..+++.+.+.+.++.+ .+...+.......++...
T Consensus 321 ~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~~--------~g~~~g~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK11551 321 FVVGGQSVLYA-LAPLFYPTQVRGTGVGAAVAVGR--------LGSMAGPLLAGQLLALGR-STVGVIGASIPVILVAAL 390 (406)
T ss_pred HHHhHHHHHHH-HHHHHcchhhhhhhhhHHHHhhh--------HHHHHHhhhHhhhhccCC-chHHHHHHHHHHHHHHHH
Confidence 77666666545 55554 556664444333333 444555555555544322 233444444444433333
Q ss_pred H
Q 019522 214 I 214 (340)
Q Consensus 214 ~ 214 (340)
.
T Consensus 391 ~ 391 (406)
T PRK11551 391 A 391 (406)
T ss_pred H
Confidence 3
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-13 Score=123.68 Aligned_cols=271 Identities=14% Similarity=0.096 Sum_probs=3.0
Q ss_pred HhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc----cc-----
Q 019522 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH----SP----- 122 (340)
Q Consensus 53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~----~~----- 122 (340)
.++....++.+.++|+++.++.|++.+..-++..+..++..++.+|..|-|.+-.+.++.++++ ++++ .+
T Consensus 19 ~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~ 98 (539)
T PF03137_consen 19 SGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence 3444455889999999999999999999999899999999999999999899999999998876 4322 00
Q ss_pred -----------------------------------------hHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccchhhH
Q 019522 123 -----------------------------------------QYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQ 161 (340)
Q Consensus 123 -----------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~ 161 (340)
-+..++++.++.|+|....++...+ |+-|..++.. ..
T Consensus 99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t-YiDDnv~~~~-sp 176 (539)
T PF03137_consen 99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT-YIDDNVSKKN-SP 176 (539)
T ss_dssp -----------------------------------------------------SSS------------------------
T ss_pred cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee-eecccccccc-Cc
Confidence 0236788999999999999999988 9999822222 12
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc------------cCCCcc----hhhhhHHHHHHHHHHHHh---cccccc
Q 019522 162 WLSITFSKAIFLGNGLVAILSGLFGNLLVDS------------FSLGPV----APFDAAACFLAIGMVIIL---SSWTEN 222 (340)
Q Consensus 162 ~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~ 222 (340)
...+.......+|.++|.++++.....-.+. .+-+|. .-|++.+.+.++..+.+. +.+|++
T Consensus 177 lYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 177 LYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 2223333334445555555555443322111 122332 334444444443333332 223333
Q ss_pred cCCC--------ccch---H-------------HHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCC
Q 019522 223 YGDP--------SESK---D-------------LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND 278 (340)
Q Consensus 223 ~~~~--------~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (340)
++.+ ++++ + ..+...+..+.+++||.++...+...+-.....+ ..++.|.|++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G-~~tF~pKylE~Q 335 (539)
T PF03137_consen 257 SERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG-FATFLPKYLESQ 335 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 0000 0000 0 0011112344578888888876665554444444 588999999999
Q ss_pred CCchhhHHHH----HHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 019522 279 EEIPHGFIFA----TFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS 326 (340)
Q Consensus 279 ~~~~~~~~~~----~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 326 (340)
++.+++.... +...++++|.+++|++.+|++.+.+..+........+.
T Consensus 336 F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 336 FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp ----------------------------------------------------
T ss_pred hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 9998863332 23345778999999999999765434444444444433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-10 Score=101.59 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=68.7
Q ss_pred hHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-h-h--hccchHHHHHHHH
Q 019522 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I-T--KHSPQYKILMIGR 131 (340)
Q Consensus 57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~-~--~~~~~~~~l~~~r 131 (340)
..+.|.+. +++|.+..+.+.......++..++.+..|+++||+|||+.+..+.+...+.. . . ..+++...+++.+
T Consensus 270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
T PRK10642 270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL 349 (490)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34567766 4679888877777777777777888889999999999999888776544322 1 2 2345567777888
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccch
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGF 158 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~ 158 (340)
++.|++.+...+.... ++.|. +.|+.
T Consensus 350 ~~~g~~~~~~~g~~~~-~~~~~~p~~~Rg~ 378 (490)
T PRK10642 350 LMLAVILNCFTGVMAS-TLPAMFPTHIRYS 378 (490)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHCCCccchH
Confidence 8888776655444333 44444 44554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-09 Score=92.96 Aligned_cols=148 Identities=24% Similarity=0.233 Sum_probs=102.5
Q ss_pred hHH-HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-h-hhccchHHHHHHHHHH
Q 019522 57 GPY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I-TKHSPQYKILMIGRIL 133 (340)
Q Consensus 57 ~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~-~~~~~~~~~l~~~r~l 133 (340)
..| -|.+.+..|.|.++++++....-+++.+++.+.|+++|| +.|+.+.....+.++.. . ....++.+..++.-++
T Consensus 231 ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~ 309 (394)
T COG2814 231 YTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFL 309 (394)
T ss_pred HHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 455 667777889999999999999999899999999999999 99999888878777766 3 4456666666777777
Q ss_pred HHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHH
Q 019522 134 GGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 211 (340)
.|++.......... -+++. +.++...+ .+....++|..+|..+|+.+.+. +++....+..+++.+++
T Consensus 310 wg~a~~~~~~~~~~-~~a~~~p~~~~~a~s----l~~aa~nlgia~GA~lGG~v~~~------~g~~~~~~~~a~l~~~a 378 (394)
T COG2814 310 WGFAFSPALQGLQT-RLARLAPDAADLAGS----LNVAAFNLGIALGAALGGLVLDA------LGYAATGWVGAALLLLA 378 (394)
T ss_pred HHHHhhhhhhHHHH-HhcccCCCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHh------hchHHHHHHHHHHHHHH
Confidence 77776665444333 34442 44445444 44444455665666666655543 44556677777777766
Q ss_pred HHHHh
Q 019522 212 MVIIL 216 (340)
Q Consensus 212 ~~~~~ 216 (340)
..+..
T Consensus 379 ~~~~~ 383 (394)
T COG2814 379 LLLAL 383 (394)
T ss_pred HHHHH
Confidence 66653
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.8e-10 Score=98.13 Aligned_cols=146 Identities=21% Similarity=0.301 Sum_probs=94.5
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
..+.|.+.++.+.++ .+.......++..++.++.|++.||+|+||.+..+..+.+++. +..+.++.+.+.+..++.|
T Consensus 236 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 313 (392)
T PRK12382 236 GTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG 313 (392)
T ss_pred HHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 455566667777654 3444445555566777889999999999999999888888877 6667788888888899999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
++.+...+.... .+.|. ++|+...+..... .. +|..+++.+.+.+.++.+|+ ..+...+.+.++..
T Consensus 314 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~----~~----~g~~ig~~~~g~l~~~~g~~--~~~~~~~~~~~~~~ 382 (392)
T PRK12382 314 AGCSLIFPALGV-EVVKRVPSQVRGTALGGYAAF----QD----IAYGVSGPLAGMLATSFGYP--SVFLAGAISAVLGI 382 (392)
T ss_pred HHHHhHHHHHHH-HHHHhcCHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHH
Confidence 998887776544 44443 5555544333332 33 34444444444555555555 55666655555544
Q ss_pred HHH
Q 019522 213 VII 215 (340)
Q Consensus 213 ~~~ 215 (340)
...
T Consensus 383 ~~~ 385 (392)
T PRK12382 383 IVT 385 (392)
T ss_pred HHH
Confidence 444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-09 Score=94.86 Aligned_cols=148 Identities=22% Similarity=0.259 Sum_probs=107.7
Q ss_pred hHHHHHHHHhh-CCChhhhHHHHHHHHhhhhhhhhhhhhccccccchH-HHHHHHHHHHHHh-hhhccchHHHHHHHHHH
Q 019522 57 GPYVYYLYSTY-GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-ACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (340)
Q Consensus 57 ~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~-~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l 133 (340)
..+.|.+.++. |.++.+.+.......+...++.++.|++.||+|||+ .+..+..+..++. .....++.+...+..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 274 (352)
T cd06174 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274 (352)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45566776665 999999999999999989999999999999999999 9999998888887 66778888888999999
Q ss_pred HHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHH
Q 019522 134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 210 (340)
.|++.+...+.... ++.|. ++|++..+.... ... ++..+++.+.+.+.+..+| +..+.+.+++..+
T Consensus 275 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~----~~~~i~~~i~g~l~~~~~~--~~~~~~~~~~~~i 343 (352)
T cd06174 275 LGFGLGFAFPALLT-LASELAPPEARGTASGLFNT----FGS----LGGALGPLLAGLLLDTGGY--GGVFLILAALALL 343 (352)
T ss_pred HHHHHhccchhHHH-HHHhhcCHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHhcccCc--chHHHHHHHHHHH
Confidence 99999998887766 66665 445553333333 333 4444555555555444444 4667666666655
Q ss_pred HHHHH
Q 019522 211 GMVII 215 (340)
Q Consensus 211 ~~~~~ 215 (340)
..+..
T Consensus 344 ~~i~~ 348 (352)
T cd06174 344 AALLL 348 (352)
T ss_pred HHHHh
Confidence 55443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-09 Score=91.81 Aligned_cols=249 Identities=14% Similarity=0.157 Sum_probs=143.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHH-Hh-hhhccch--H-HHHHHHHHHHHHHhhhhhhhhhhhh
Q 019522 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKHSPQ--Y-KILMIGRILGGIATSLLFSAFESWL 149 (340)
Q Consensus 75 g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-~~~~~~~--~-~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (340)
|...+...+...+.+|..|.++|+.|+||..........+ .. ...+.++ + +..++...+..++........++ +
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds-~ 139 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS-M 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh-H
Confidence 5566666777778899999999999988877766655555 33 4455443 4 44455667777877777666666 6
Q ss_pred hccccccchhhHHHHHHHHHHHHhhhhHHHHHH--Hhhhh----h------hhcccCCCcchhhhhHHHHHHHHHHHHhc
Q 019522 150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILS--GLFGN----L------LVDSFSLGPVAPFDAAACFLAIGMVIILS 217 (340)
Q Consensus 150 i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~--~~~~~----~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (340)
+.+..++.......+..+..++. |+.+--+.. ..... . +-+..+-.-|..+.+.++..++..+....
T Consensus 140 L~~~~~k~~~~riS~lg~~~gyl-gs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 140 LPRLTTKDNMGRISGLGWALGYL-GSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred hhhhcCccccCcccccccccccc-cchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 65542222211112222222221 111111110 01110 0 00012223345555555555554444433
Q ss_pred ccccccCCC-ccc---hHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhh---HHHHHH
Q 019522 218 SWTENYGDP-SES---KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATF 290 (340)
Q Consensus 218 ~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 290 (340)
..++..... .++ .+..+++.+..++.++++.+..+.+..++........ ......|..+.+|.+.. ......
T Consensus 219 ~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~ti-l~~~~~fg~~~~gls~~~lll~g~~~ 297 (438)
T COG2270 219 NVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTI-LAMGGVFGAADLGLSSTELLLIGIAL 297 (438)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHH-HHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 333222111 111 2344556667788888888888878777777776663 66677888888888774 444556
Q ss_pred HHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHH
Q 019522 291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL 328 (340)
Q Consensus 291 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 328 (340)
.+.++++.++.|++.||+|.|+ ++..+.++..+...
T Consensus 298 ~vvA~lg~ii~g~Ld~rfg~k~--vl~~~lvi~~~~~~ 333 (438)
T COG2270 298 SVVAALGAIIAGFLDERFGSKP--VLMIGLVILSIAAL 333 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCce--eehHHHHHHHHHHH
Confidence 7889999999999999999994 44444444444333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-09 Score=94.49 Aligned_cols=157 Identities=15% Similarity=0.089 Sum_probs=88.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHh-hhhhhhhhhhhccccccchHHHHHHHHHHHHHh-h-hhc---
Q 019522 47 SLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFG-SSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I-TKH--- 120 (340)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~-~~~--- 120 (340)
++..........+.+.+.+|.|++++++|.+...... ...++..+.|++.||+|+|+.+..+..+.++.. . ...
T Consensus 218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (390)
T TIGR02718 218 LLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF 297 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333333455666777889999999998776654 344556789999999999999988776653322 1 111
Q ss_pred --cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc----cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC
Q 019522 121 --SPQYKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS 194 (340)
Q Consensus 121 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~ 194 (340)
.++...+.....+.+++.+...+...+ ...+. +.++...+..++.. .+|..+|+.+ ++.+.+..|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~----~lg~~~g~~~----~G~l~~~~G 368 (390)
T TIGR02718 298 WLAPGIAVAWSCSAFGSLITGITSVAIYT-AFMRFAGDGDQAGTDVTAVQSTR----DLGELIASSI----AGYLTDRFG 368 (390)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcccchHHHHHHHHHHH----HHHHHHHHHH----HHHHHHHHc
Confidence 233344444455556666666555444 32222 33445333333333 3444444444 444444444
Q ss_pred CCcchhhhhHHHHHHHHHHH
Q 019522 195 LGPVAPFDAAACFLAIGMVI 214 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~ 214 (340)
+ +..|...+.+.++....
T Consensus 369 ~--~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 369 Y--AGGFLSGTVLAVLAILL 386 (390)
T ss_pred c--HHHHHHHHHHHHHHHHH
Confidence 4 36666666555554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.7e-11 Score=88.21 Aligned_cols=123 Identities=23% Similarity=0.385 Sum_probs=83.8
Q ss_pred HhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccc
Q 019522 82 FGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRG 157 (340)
Q Consensus 82 ~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~ 157 (340)
.++..+.+++.|++.||+|||+.+..+.....++. .....++++.+.+.+++.|++.+...+...+ ++.|. ++|+
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ 86 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA-LIADIYPPEERG 86 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHCChhhhh
Confidence 34566778889999999999999999988888877 6677788999999999999999888777656 66664 4455
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 158 FEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 158 ~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
+..+....... ++..+++.+.+.+.+..+|+ ..+........+.....
T Consensus 87 ~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 134 (141)
T TIGR00880 87 VALGLMSAGIA--------LGPLLGPPLGGVLAQFLGWR--APFLFLAILALAAFILL 134 (141)
T ss_pred HHHHHHHHhHH--------HHHHHhHHhHHHHhcccchH--HHHHHHHHHHHHHHHHH
Confidence 54433333322 44444444455544444444 55666555555444444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.3e-09 Score=93.08 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=64.5
Q ss_pred HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh-ccchHHHHHHHHHHHHHH
Q 019522 60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-HSPQYKILMIGRILGGIA 137 (340)
Q Consensus 60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~-~~~~~~~l~~~r~l~G~~ 137 (340)
.|.+.+.+|.++.+.+.+.+...+...++.++.|++.||+|+|+.+..+..+.+++. +.. ..++.+...+..++.+.+
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 302 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555689999999999888888889999999999999999999998888777766 443 345555556666666666
Q ss_pred hhhhhhhh
Q 019522 138 TSLLFSAF 145 (340)
Q Consensus 138 ~~~~~~~~ 145 (340)
.....+..
T Consensus 303 ~~~~~~~~ 310 (382)
T PRK10091 303 LFALSAPL 310 (382)
T ss_pred HHhhhHHH
Confidence 55444433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-09 Score=93.80 Aligned_cols=146 Identities=15% Similarity=0.167 Sum_probs=90.5
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHH-HHHHHHHHHh-hhh-----ccchHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-TYCLTYILSC-ITK-----HSPQYKILMI 129 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~-~~~-----~~~~~~~l~~ 129 (340)
..+.|.+.+++|.+..+.+.+.....+++.++.+..|+++||+|||+.+. .+.+...++. ... ..++.+...+
T Consensus 242 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (402)
T TIGR00897 242 AVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI 321 (402)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 34578888899999999988888888888899999999999999988764 2333333322 211 2345666777
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 130 GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
..++.|++.+...+. .+ .+.|. ++|+...+. .+.... ++..++|.+.+.+.+..| +...+++.+++
T Consensus 322 ~~~~~G~~~~~~~~~-~~-~~~~~~~~~~g~~~g~----~~~~~~----lg~~~gp~i~g~l~~~~g--~~~~~~~~a~~ 389 (402)
T TIGR00897 322 IAIALGIFLAGYVPL-AA-VFPTLAPKHKGAAMSV----LNLSAG----LSAFLAPAIAVLFIGFFG--AIGVVWIFAAL 389 (402)
T ss_pred HHHHHHHHHHHHHHH-HH-HHHhhCcchhHHHHHH----HHHHHH----HHHHHHHHHHHHHHhhcc--hHHHHHHHHHH
Confidence 888889887765443 23 44443 445553333 332333 444555555555555444 44566666655
Q ss_pred HHHHHHH
Q 019522 208 LAIGMVI 214 (340)
Q Consensus 208 ~~~~~~~ 214 (340)
.++....
T Consensus 390 ~~i~~~~ 396 (402)
T TIGR00897 390 YVVSAFL 396 (402)
T ss_pred HHHHHHH
Confidence 5444333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-09 Score=96.61 Aligned_cols=123 Identities=22% Similarity=0.243 Sum_probs=81.6
Q ss_pred HHHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc---cchHHHHHHHHH
Q 019522 58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQYKILMIGRI 132 (340)
Q Consensus 58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~---~~~~~~l~~~r~ 132 (340)
.+.|.+.+ .+|.++.+.++......+...+..++.|++.||+|||+++..+..+.++.. +..+ .++.+.+.+..+
T Consensus 282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (471)
T PRK10504 282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLF 361 (471)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 34666666 589999999988887777777777889999999999999998888777765 4333 233444445567
Q ss_pred HHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
+.|++.+...+.... +..+. +.++...+..+.... +|..+|+.+++.+
T Consensus 362 ~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~----~g~~ig~~i~g~l 412 (471)
T PRK10504 362 LQGMVNSTRFSSMNT-LTLKDLPDNLASSGNSLLSMIMQ----LSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCHHhccchHHHHHHHHH----HHHHHHHHHHHHH
Confidence 778877777666544 43332 556665444444444 4444555554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-08 Score=92.28 Aligned_cols=148 Identities=14% Similarity=0.178 Sum_probs=82.4
Q ss_pred HHHHHHhhCCChhhhHHHH-HHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh----hhhcc-chHHHHHHHHHH
Q 019522 60 VYYLYSTYGFGKGEIGQLF-IAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHS-PQYKILMIGRIL 133 (340)
Q Consensus 60 ~~~~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----~~~~~-~~~~~l~~~r~l 133 (340)
.|.+.+++|.++++.+... ....++..++.++.|+++||+|+|+.+..+.++.++.. ..+.. ++...+...-++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3444567999999999987 46667778888899999999999998877665544432 12333 344444444555
Q ss_pred HHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHH
Q 019522 134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
..++.+...+...+ +..+..++..... ..+..+... .+|..+++.+.+++.+..||+ ..|.+.+++.+...+
T Consensus 326 ~~~~~g~~~~~~~a-~~~~l~~~~~~~t-~~gl~~s~~----~lg~~~~~~~~G~l~~~~G~~--~~f~~~~~~~l~~l~ 397 (491)
T PRK11010 326 ENLCGGMGTAAFVA-LLMTLCNKSFSAT-QFALLSALS----AVGRVYVGPVAGWFVEAHGWP--TFYLFSVAAAVPGLL 397 (491)
T ss_pred HHHHHHHHHHHHHH-HHHHHcCCCCcHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHH
Confidence 44443433333323 3333311112111 222222222 244455555556666655544 556666555555544
Q ss_pred HH
Q 019522 214 II 215 (340)
Q Consensus 214 ~~ 215 (340)
..
T Consensus 398 ~~ 399 (491)
T PRK11010 398 LL 399 (491)
T ss_pred HH
Confidence 44
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-09 Score=93.98 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=88.5
Q ss_pred HHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccch-HHHHHHHHHHH
Q 019522 58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ-YKILMIGRILG 134 (340)
Q Consensus 58 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~-~~~l~~~r~l~ 134 (340)
...|.+.++ +|.++.+.+.+.....++..++.++.|++.||+|||+.+..+..+.+++. ...+.++ .+.+.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 456777765 89999999999888888888888899999999999999988877777766 5556664 77888889999
Q ss_pred HHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
|++.+...+...+ ++.|. ++|+...+..... ..++..+++.+++.+
T Consensus 312 g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~----~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 312 GVGYGPINVPQGT-LLQRRVPAELLGRVFGAQFSL----SHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 9999888777655 66554 4455543333333 333443444444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-08 Score=85.64 Aligned_cols=255 Identities=14% Similarity=0.093 Sum_probs=138.7
Q ss_pred HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccccc-----chHHHHHHH-HHHHHHh-hhh-----ccc--------
Q 019522 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYC-LTYILSC-ITK-----HSP-------- 122 (340)
Q Consensus 63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-----rr~~l~~~~-~~~~~~~-~~~-----~~~-------- 122 (340)
+..|++++..-.+.+....++ -....+.+|+.+|+.+ ||..+++.. ...+.+. +.+ ...
T Consensus 6 MIvEL~vpA~lv~~lval~~~-~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYL-VAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHH-HHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 456899999999998888887 4557889999999999 887776553 3333332 221 122
Q ss_pred hHH---HHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCC-
Q 019522 123 QYK---ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL- 195 (340)
Q Consensus 123 ~~~---~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~- 195 (340)
.+. ...+...+.|+|.+...+...+ +++|. ++|++..++...+.- .|. +++....+.+.+.++-
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lA-Ll~D~~~e~~R~~~v~ivw~Mli----~G~----iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLA-LLADLAPEERRPRVVAIVWVMLI----VGI----IVSAIVFGRLLDPFSPE 155 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHH-HHHhcCCHhhhhhhHHHHHHHHH----HHH----HHHHHHHHHHccccCHH
Confidence 211 3345667788888888777656 76665 666665444443333 333 3333333333322211
Q ss_pred CcchhhhhHHHHHHHHHHHHhcccccccCCCc-cchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcccc
Q 019522 196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPS-ESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (340)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (340)
+-...+...+.+.+...++..+..+++.++.+ ++++..+..++.++++..+|+...+.....+ ....+.+--..+-.|
T Consensus 156 rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l-~t~a~~~QD~iLEPy 234 (403)
T PF03209_consen 156 RLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFL-GTLAFFMQDVILEPY 234 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHH-HHHHHHhhHHHcCCc
Confidence 11111222222222222222122221111111 1222233445566677777776665443333 233333334456678
Q ss_pred ccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhh-CCCCchhHHHHHHHHHHHHHHHH
Q 019522 275 SPNDEEIPHG---FIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVFVVSSVSLLLP 330 (340)
Q Consensus 275 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~ 330 (340)
..+.+|++.+ ........+..++....+++..| .+++ +....+...+..++.+.
T Consensus 235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~--~~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK--RTAALGCLLGALAFALI 292 (403)
T ss_pred hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHHHHHH
Confidence 8888888875 44455677888888888887774 4444 44445555555544443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-09 Score=94.52 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=89.2
Q ss_pred CCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhh
Q 019522 68 GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFE 146 (340)
Q Consensus 68 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (340)
+.+..+.|.+.+...+...+.....|++.||+|||+.+..+..+.++.. +....++.+.+...+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888777777788889999999999999999988888877 556788888888889999988766544333
Q ss_pred hhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 147 SWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 147 ~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
. +..+. ++|.... . .+.+......+|..+++.+.+++.+..| ++..|.+.+++.++..
T Consensus 330 ~-~~~~~~~~~~~at--~---~~~~~~~~~~lg~~~~~~l~G~l~~~~G--~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 330 K-YITSQFDVRLSAT--I---YLIGFQFAKQLAMIFLSTLAGNMYDSIG--FQGAYLVLGCIVLLFT 388 (396)
T ss_pred H-HHHHhCCcceEEE--e---ehHHHHHHHHHHHHHHHHhHHHHHHhcc--cHHHHHHHHHHHHHHH
Confidence 3 34432 3333211 1 1111222333555666666666665545 4466766655554443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.4e-09 Score=94.23 Aligned_cols=154 Identities=15% Similarity=0.060 Sum_probs=89.3
Q ss_pred hHHHHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh--c-c-chHHHHHHH
Q 019522 57 GPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK--H-S-PQYKILMIG 130 (340)
Q Consensus 57 ~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~--~-~-~~~~~l~~~ 130 (340)
..+.|.+ .+++|.++.+...+.......+.++.++.|+++||+|||+.+..+.++..++. ... . . ++...++..
T Consensus 270 ~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T PRK09952 270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFS 349 (438)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3445544 45688888765544444445566677789999999999999888876655543 221 1 2 234444555
Q ss_pred HHHHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHH
Q 019522 131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 210 (340)
.++.+++.+...+...+ ++.|.-+... .....+....++..++..++|.+..++.+..+..|..++...++..++
T Consensus 350 ~~l~~~~~~~~~~~~~~-~~~e~~p~~~----r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i 424 (438)
T PRK09952 350 IMLANIAHDMVVCVQQP-MFTEMFGASY----RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLI 424 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHCCcch----hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 66777877776666545 7777522212 111223333344445666666666666654444455656555555555
Q ss_pred HHHHH
Q 019522 211 GMVII 215 (340)
Q Consensus 211 ~~~~~ 215 (340)
..+..
T Consensus 425 ~~v~~ 429 (438)
T PRK09952 425 SAMTA 429 (438)
T ss_pred HHHHH
Confidence 44444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=92.76 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=110.3
Q ss_pred HHHhhhh--HH-HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccch--HHHHHHHHHHHHHh-hhhc----
Q 019522 51 AGDWLQG--PY-VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK--RACVTYCLTYILSC-ITKH---- 120 (340)
Q Consensus 51 ~~~~~~~--~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr--~~l~~~~~~~~~~~-~~~~---- 120 (340)
..|++.. .+ ...-.+++|++..+...+.....+.+.+++.++|++.||+|.| +++..+...+.+.. ...+
T Consensus 293 ~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~ 372 (477)
T PF11700_consen 293 YSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWP 372 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455553 22 3334458999999998888888888999999999999999999 88888888775543 2222
Q ss_pred ----cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCC
Q 019522 121 ----SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG 196 (340)
Q Consensus 121 ----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~ 196 (340)
.++.+.+.+.-++.|+..|..++...+ +.+|.-++++... ..+.+....- ....++|.+.+.+.+..+ .
T Consensus 373 ~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs-~~~~LiP~g~e~e-fFgly~i~gk----~ss~lGPll~g~i~~~tg-~ 445 (477)
T PF11700_consen 373 SFFGLKSPWEFWVLAVLIGLFMGGIQSASRS-LFSRLIPPGREAE-FFGLYAITGK----ASSWLGPLLFGLITDATG-S 445 (477)
T ss_pred cccCcccHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCchhhH-HHHHHHHHHH----HHHHHHHHHHHHHHHHhC-C
Confidence 466778888889999999999999888 8777655555322 2222332222 344455555444444343 2
Q ss_pred cchhhhhHHHHHHHHHHHHhcccccccCC
Q 019522 197 PVAPFDAAACFLAIGMVIILSSWTENYGD 225 (340)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (340)
.|..+....++.++..++. .+.+.++++
T Consensus 446 ~r~g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 446 QRYGFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred chhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence 3455666666666666665 444544443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-10 Score=92.11 Aligned_cols=260 Identities=13% Similarity=0.085 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHHh----hhhHH--HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccc-ccchHHHHHHHHHH
Q 019522 40 NNYLLVYSLMMAGDW----LQGPY--VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTY 112 (340)
Q Consensus 40 ~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~ 112 (340)
.+++.+.+.+....+ +|.|- -.++.+|.+++.++..++++.+.....+...+.|++.|| +|-|..-.+-+...
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 344444444443333 23444 445556778888888899998888888888899999996 46665544444444
Q ss_pred HHHh-h---hhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 113 ILSC-I---TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 113 ~~~~-~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
.++- . ....+.+|.+..+|++.|+|.-..-..-+. +...+ ++-+...+...+..- +|+.+...+.+.+
T Consensus 121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~-yav~wFKGKELn~vfGlqlSvAR----~GstvNf~lm~~l 195 (459)
T KOG4686|consen 121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNK-YAVYWFKGKELNFVFGLQLSVAR----LGSTVNFLLMPFL 195 (459)
T ss_pred HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcc-eeEEEecCccccchhhHHHHHHH----hhceeeeeecHHH
Confidence 4443 2 245789999999999999986655344434 55444 555665555555544 3333333444444
Q ss_pred hhhhhcccCCCcchhhh----hHHH---HHHHHHHHHhcccccccCCCccchHHHHHHHHH------HHHHh-hchhHHH
Q 019522 186 GNLLVDSFSLGPVAPFD----AAAC---FLAIGMVIILSSWTENYGDPSESKDLLTQFRGA------AVAIA-SDEKIAL 251 (340)
Q Consensus 186 ~~~l~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~ 251 (340)
.+.+.+..+-.-..... .... ..++.+.. ..+.+++ +++..++.... ..... -.|++|.
T Consensus 196 y~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~--lg~~D~r-----Aerilh~e~g~~Ge~pkLtdv~~f~ppfw~ 268 (459)
T KOG4686|consen 196 YDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALS--LGLSDDR-----AERILHLEEGFLGEEPKLTDVNTFYPPFWV 268 (459)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhH-----HHHHHhhhcCcccCCcccccccccCccHHH
Confidence 44433322111101110 0011 11111111 1111111 11111110000 00111 1267777
Q ss_pred HHHHHHHhhhhHHHHHHhhccccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 252 LGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+.....+.....+.+ ...-|.+.++.+|.++. .+.+.....+.+.+++.|.++||.|++.
T Consensus 269 ~~iicv~yyva~fPF-i~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~ 331 (459)
T KOG4686|consen 269 LVIICVLYYVAWFPF-ITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL 331 (459)
T ss_pred HHHHHHHHHHHHHHH-hhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee
Confidence 766666655555554 56677888898888774 4444445556777889999999999984
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-09 Score=95.93 Aligned_cols=116 Identities=17% Similarity=0.136 Sum_probs=76.7
Q ss_pred ChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc-chHHHHHHHHHHHHHHhhhhhhhhhh
Q 019522 70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-PQYKILMIGRILGGIATSLLFSAFES 147 (340)
Q Consensus 70 s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 147 (340)
++.+.+.+.....+...++.++.++++||+|+|+++..+..+.+++. ...+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566767677777788888899999999999999999988887766 44443 45666777788889988888776655
Q ss_pred hhhccc------cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 148 WLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 148 ~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
+++|. +...+..+...+..+....+|..+|+.+.+.+.
T Consensus 335 -~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 335 -LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred -HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 111122233444455455555555555555443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=101.15 Aligned_cols=134 Identities=21% Similarity=0.173 Sum_probs=90.3
Q ss_pred HHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---
Q 019522 78 FIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH--- 153 (340)
Q Consensus 78 ~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~--- 153 (340)
.....++..++.++.|+++||+|||+++..+.++.++++ +.++.++...+++.+++.|++.+..++.... +++|.
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a-~~aEl~Pt 679 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDV-LTVELYPS 679 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCH
Confidence 334445567778889999999999999999999999887 6778887777888888888887777777655 77775
Q ss_pred cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccC
Q 019522 154 NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG 224 (340)
Q Consensus 154 ~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (340)
+.|+...++...... +|.+++|.+++.+.+. ....++.+.+++.+++.++. ..+||+++
T Consensus 680 ~~Rgta~Gi~~~~~r--------lGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll~-~~LPET~~ 738 (742)
T TIGR01299 680 DKRATAFGFLNALCK--------AAAVLGILIFGSFVGI---TKAAPILFASAALACGGLLA-LKLPDTRG 738 (742)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHH-HhCCCCcc
Confidence 556664444444333 4444555444433332 12356766666665555555 45576654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=99.00 Aligned_cols=145 Identities=12% Similarity=0.027 Sum_probs=92.7
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc--cchHHHHHH--HHHHHHHh-hhhccchHHHHHHHHH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTY--CLTYILSC-ITKHSPQYKILMIGRI 132 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~~~--~~~~~~~~-~~~~~~~~~~l~~~r~ 132 (340)
.++|.+.++.|.+..+.+.+.+...++..++.++.|+++||. ++|+....+ .+..+++. +....++++.+++.++
T Consensus 262 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~ 341 (455)
T TIGR00892 262 IFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCI 341 (455)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 456777788999999999998888888888889999999984 344433333 33333444 4456788888888999
Q ss_pred HHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHH
Q 019522 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 209 (340)
+.|++.+...+...+ ++.|. ++++...+..... .. +|..+++.+.+.+.+..+ +|+..|+..+++.+
T Consensus 342 ~~G~~~g~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~----~~----lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~l 411 (455)
T TIGR00892 342 FFGLSFGSVGALLFE-VLMDLVGAQRFSSAVGLVTIV----EC----CAVLIGPPLAGRLVDATK-NYKYIFYASGSIVV 411 (455)
T ss_pred HHHHHhchHHHHHHH-HHHHHhhHHHHhhHHhHHHHH----HH----HHHHccccceeeeehhcC-CcchHHHHhhHHHH
Confidence 999998888776655 55554 3445533333222 22 455555555555554442 23355655554444
Q ss_pred HHH
Q 019522 210 IGM 212 (340)
Q Consensus 210 ~~~ 212 (340)
+..
T Consensus 412 i~~ 414 (455)
T TIGR00892 412 SAG 414 (455)
T ss_pred HHH
Confidence 433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-08 Score=90.19 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=72.5
Q ss_pred HHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc-----cchHHHHHHHHH
Q 019522 60 VYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-----SPQYKILMIGRI 132 (340)
Q Consensus 60 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~-----~~~~~~l~~~r~ 132 (340)
.|.+ .+++|.++.+.+........+..++.++.|+++||+|+|+.+..+.++..++. +... .++...+.+..+
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS 317 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 4554 45689999999887776666677778889999999999999988887776655 3332 235666777888
Q ss_pred HHHHHhhhhhhhhhhhh-hccccccchhhHHH
Q 019522 133 LGGIATSLLFSAFESWL-VAEHNKRGFEQQWL 163 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~-i~~~~~r~~~~~~~ 163 (340)
+.|++.+...+...... ..+.++|++..+..
T Consensus 318 ~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 349 (406)
T PRK15402 318 LYAFGIGLANAGLYRLTLFSSDVSKGTVSAAM 349 (406)
T ss_pred HHHHHHHHHhhhHHHHHhhhccccccHHHHHH
Confidence 89999888766543311 22235666744333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-08 Score=89.52 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=86.7
Q ss_pred HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHH-HHh-hhhccchHHHHHHHHHHHHHH
Q 019522 60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI-LSC-ITKHSPQYKILMIGRILGGIA 137 (340)
Q Consensus 60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~-~~~-~~~~~~~~~~l~~~r~l~G~~ 137 (340)
.|.+.+++|.++.+.+.+.....+++.+++.+.|++.||.+ |+.+..+..+.. ... +....++.+.+.+..++.|++
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~ 318 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT 318 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46677889999999999888888878888889999999964 444444444433 334 334556777777888999999
Q ss_pred hhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 138 TSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 138 ~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
.+...+...+ ++.+. +++++..+.... ... +|..+++.+++.+.+..| .+..+...+.+.++..
T Consensus 319 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~----lg~~~G~~l~G~l~~~~g--~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 319 FALVPVGWST-WITRSLADQAEKAGSIQVA----VIQ----LANTCGAAIGGYALDNIG--LTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHhhhHHHHH-HHHHHCcccHHHHHHHHHH----HHH----HHHHHHHHHHHHHHhccC--hhhHHHHHHHHHHHHH
Confidence 8888776655 44443 223332222222 223 344444555555544444 3355555554443333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.7e-09 Score=94.21 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=59.1
Q ss_pred HHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh---hhhccchHHHHHHHHHH
Q 019522 58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC---ITKHSPQYKILMIGRIL 133 (340)
Q Consensus 58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~l~~~r~l 133 (340)
...|.+. +++|+|..+.+.......++..++.++.|+++||+|||+.+........++. .....++.....+.+++
T Consensus 279 ~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 279 NWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA 358 (467)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4466554 5789999999998888888888999999999999999988766544443332 22334566666677888
Q ss_pred HHHHh
Q 019522 134 GGIAT 138 (340)
Q Consensus 134 ~G~~~ 138 (340)
.|+..
T Consensus 359 ~G~~~ 363 (467)
T PRK09556 359 LGFLV 363 (467)
T ss_pred HHHHH
Confidence 88643
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=92.78 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=96.4
Q ss_pred HHHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
..+|.+.+ ++|.++...|++.+...+++.+++.+.+++.+|+++++.+..+.+..+++. ..+++++.+...+..++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34676654 689999999999999999888999999999999999999999998888887 7789999999999999999
Q ss_pred HHhhhhhhhhhhhhhcc---ccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 019522 136 IATSLLFSAFESWLVAE---HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~---~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 188 (340)
++.........+ .+.+ .+.||+..+....... .+..+|..+.+.+++.
T Consensus 319 ~~~~~~~~~~~t-~~Q~~~P~~~~GRv~si~~~~~~----g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 319 AAWIIANSSLNT-LVQLSVPDWVRGRVFSIYQMVFF----GGMPLGSLLWGFLADH 369 (524)
T ss_pred HHHHHHHHHHHH-HHHHhCCHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 998887766544 4333 3667775555444444 4444555666655554
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-08 Score=88.24 Aligned_cols=165 Identities=17% Similarity=0.210 Sum_probs=104.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhC-CChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc-c
Q 019522 46 YSLMMAGDWLQGPYVYYLYSTYG-FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-P 122 (340)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~-~ 122 (340)
.++..........+.+.+.+|.| .+....+.+.+.+.+.-.+.-...+++..|+|.|+++.++.+..++=. +.+.. +
T Consensus 216 ~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~ 295 (400)
T PF03825_consen 216 AFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD 295 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444444566777788888 677777877777777666666678999999999999999999999966 66655 4
Q ss_pred hHHHHH----HHHHHHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCC--
Q 019522 123 QYKILM----IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG-- 196 (340)
Q Consensus 123 ~~~~l~----~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~-- 196 (340)
+.+... ....+.|+..+..+..... ++.+..+++.+. ..+++...+..++|..++..+++++.++.+-+
T Consensus 296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~-yi~~~~p~~~~a----t~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~ 370 (400)
T PF03825_consen 296 PWPFIVALQLLGQLLHGLTFGLFHAASVR-YIDRIAPPELRA----TAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM 370 (400)
T ss_pred CcHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHhCCccchH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence 444333 3345799999999888766 877763333322 22333333444566666666666666655433
Q ss_pred --cchhhhhHHHHHHHHHHHH
Q 019522 197 --PVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 197 --~~~~~~~~~~~~~~~~~~~ 215 (340)
|...+.+.+.+.++..++.
T Consensus 371 ~~~~~~~~v~a~~~~~~~~~f 391 (400)
T PF03825_consen 371 FDWSAVFLVFAVMALVILVLF 391 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-08 Score=88.92 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=58.0
Q ss_pred HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhh
Q 019522 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL 141 (340)
Q Consensus 63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~ 141 (340)
..+++|.++.+.+.+.....+...++.++.|++.||+|||+.+..+..+..++. ...+.++.+.....-.+.+.+.+..
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 309 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG 309 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999988888888788888899999999999999999988887766 5455444444444444444444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.2e-09 Score=94.40 Aligned_cols=159 Identities=15% Similarity=0.091 Sum_probs=92.4
Q ss_pred HHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc---chHH-HHHHHHHH
Q 019522 59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS---PQYK-ILMIGRIL 133 (340)
Q Consensus 59 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~---~~~~-~l~~~r~l 133 (340)
+.|.+.++.|.+..+.+.......+...++.++.|+++||+|||+++..+.++.+++. ..+.. +... ......++
T Consensus 293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 372 (479)
T PRK10077 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 372 (479)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3678888899887766666555666677788889999999999999999998888765 43321 1111 22233344
Q ss_pred HHHHhhhhh-hhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh--hhhhcccCCCcchhhhhHHHH
Q 019522 134 GGIATSLLF-SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG--NLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 134 ~G~~~~~~~-~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~ 207 (340)
.+.+.+... +.... ++.|. ++|+...+....... ++..+++.+.|.+. .++.+..+| +..|+..++.
T Consensus 373 ~~~~~~~~~~~~~~~-~~~e~~p~~~r~~~~g~~~~~~~----~g~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~ 445 (479)
T PRK10077 373 YVAAFAMSWGPVCWV-LLSEIFPNAIRGKALAIAVAAQW----IANYFVSWTFPMMDKNSWLVAHFHN--GFSYWIYGCM 445 (479)
T ss_pred HHHHHhccccchhHH-HhHhhCChhHHHHHHHHHHHHHH----HHHHHHHHHhHHHHhccchhhhccC--ccHHHHHHHH
Confidence 444444322 33323 66665 556665544444433 34444444445444 333344444 4556665555
Q ss_pred HHHHHHHHhcccccccC
Q 019522 208 LAIGMVIILSSWTENYG 224 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~~~ 224 (340)
.++..+......||+++
T Consensus 446 ~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 446 GVLAALFMWKFVPETKG 462 (479)
T ss_pred HHHHHHHHHhccccCCC
Confidence 55555555444555544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-08 Score=91.73 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=79.7
Q ss_pred hHHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHH-Hh-hh---hccchHHHHHHH
Q 019522 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-IT---KHSPQYKILMIG 130 (340)
Q Consensus 57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-~~---~~~~~~~~l~~~ 130 (340)
..+.|.+.++ +|.+..+.++......+++.++.++.|+++||+|||+++..+.....+ .. .. ...+++......
T Consensus 258 ~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T PRK15075 258 TVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAV 337 (434)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 4557777665 799999988887777777888888999999999999998876544332 21 11 123344444444
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCc
Q 019522 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP 197 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~ 197 (340)
.++.|++.+...+...+ ++.|. +.|+...+. ....+..++..++|.+.+++.++.++++
T Consensus 338 ~~~~~~~~g~~~~~~~~-~~~e~~p~~~rg~~~g~-------~~~~~~~~~g~~~p~~~g~i~~~~g~~~ 399 (434)
T PRK15075 338 ELWLSFLYGSYNGAMVV-ALTEVMPAEVRTAGFSL-------AYSLATAIFGGFTPAISTWLIHVTGDKA 399 (434)
T ss_pred HHHHHHHHHHHHhhHHH-HHHHHCCCCccchheeH-------HHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence 55556666655444434 55554 455553322 1223333333445555666666566543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-09 Score=93.64 Aligned_cols=132 Identities=12% Similarity=0.166 Sum_probs=86.3
Q ss_pred hHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHH-Hh--hhhc--cchHHHHHHH
Q 019522 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC--ITKH--SPQYKILMIG 130 (340)
Q Consensus 57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~--~~~~--~~~~~~l~~~ 130 (340)
..+.|.+. +++|.++.+.+.......+...+..++.|+++||+|||+.+.....+..+ +. ...+ .++.+.+...
T Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (394)
T TIGR00883 239 TTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL 318 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 45566666 67899999999888888888888889999999999999987755544433 31 2222 3456666777
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC-CC
Q 019522 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LG 196 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~-~~ 196 (340)
.++.|++.+...+...+ ++.|. ++|+...+.. ++ .+..+|..++|.+.+.+.++.+ |+
T Consensus 319 ~~~~g~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~---~~----~~~~~g~~~~p~~~g~l~~~~g~~~ 380 (394)
T TIGR00883 319 VLGLALIGGMYTGPMGS-FLPELFPTEVRYTGASLA---YN----LAGAIFGGFAPYIAAALVAMTGDWY 380 (394)
T ss_pred HHHHHHHHHHHhhhHHH-HHHHhCCccceeeEeeeh---hH----hHHHHHhhHHHHHHHHHHHHcCcch
Confidence 88888888777777655 66665 4455533221 22 2333444555555555555555 44
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.8e-09 Score=94.52 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=90.3
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh---c--cc------hHH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK---H--SP------QYK 125 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~---~--~~------~~~ 125 (340)
.+.|.+.+++|.+..+.+.......+...++.++.|+++||+|||+.+..+..+.+++. +.. . .+ +..
T Consensus 305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (481)
T TIGR00879 305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNV 384 (481)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Confidence 44778888999999888888888888788888899999999999999998877777665 333 1 12 222
Q ss_pred HHHHHHHHHHHHhhhhh-hhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhh
Q 019522 126 ILMIGRILGGIATSLLF-SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPF 201 (340)
Q Consensus 126 ~l~~~r~l~G~~~~~~~-~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~ 201 (340)
.+.... +.+.+.+... +.... ++.|. ++|+...+..... .. +|..+++.+.+.+.++.+|+ ..|
T Consensus 385 ~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~----~~----lg~~i~~~~~~~~~~~~~~~--~~f 452 (481)
T TIGR00879 385 AIVFIL-LFIAFFAMGWGPVPWV-IVSEIFPLSLRPKGISIAVAA----NW----LANFIVGFLFPTMLESIGVG--GVF 452 (481)
T ss_pred HHHHHH-HHHHHHHccccCeehh-hhhccCChHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHhcCcc--cee
Confidence 222222 2222222222 33322 45564 3455533333222 22 45555555555555545555 456
Q ss_pred hhHHHHHHHHHHHHhccccccc
Q 019522 202 DAAACFLAIGMVIILSSWTENY 223 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~ 223 (340)
++.+.+.++..+......+|++
T Consensus 453 ~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 453 IFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred hhHHHHHHHHHHHHheecccCC
Confidence 6666555555555434445543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-08 Score=88.87 Aligned_cols=140 Identities=9% Similarity=0.052 Sum_probs=88.8
Q ss_pred HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc-chHHHHHHHHHHHHHHhhhhh
Q 019522 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-PQYKILMIGRILGGIATSLLF 142 (340)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~-~~~~~l~~~r~l~G~~~~~~~ 142 (340)
++.+.+....+..............++.|++.||.++|+.+..+..+..++. ...+. ++.+.+.+..++.|+|.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777666666667788999999999999999988887776 45543 567777778899999988777
Q ss_pred hhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHh
Q 019522 143 SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (340)
Q Consensus 143 ~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
|.... .+.+. +.++...+ ..+ ... +|..++|.+++.+.++.+.. ..|++.+....+..++..
T Consensus 317 p~~~~-~~~~~~p~~~~~~~~~----~~~-~~~----~G~~~Gp~~~G~l~~~~g~~--~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 317 PGEYM-LIDHIAPPGMKASYFS----AQS-LGW----LGAAINPLVSGVILTTLPPW--SLFVILALAIVAAWLLML 381 (395)
T ss_pred hhHHH-HHHHhCCcccceehHh----HHH-HHH----HHHHHHHHHHHHHHHHcChh--hHHHHHHHHHHHHHHHHH
Confidence 76544 55443 44444222 112 111 45555555555555555433 445555555555554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-08 Score=88.51 Aligned_cols=144 Identities=15% Similarity=0.183 Sum_probs=83.6
Q ss_pred HHHHHHhhCCChhhhHHHHHHH-HhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-h---hhcc-chHHHHHHHHH-
Q 019522 60 VYYLYSTYGFGKGEIGQLFIAG-FGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I---TKHS-PQYKILMIGRI- 132 (340)
Q Consensus 60 ~~~~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~---~~~~-~~~~~l~~~r~- 132 (340)
.|.+.+++|+++++.+.+.... ..+..++.++.|++.||+|+|+.+..+.....+.. . .++. ++.+.+...-+
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3456677999999999887543 44466777889999999999998877776655543 2 2343 45555554443
Q ss_pred ---HHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHH
Q 019522 133 ---LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (340)
Q Consensus 133 ---l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 209 (340)
..|++.+...+.... ++.+..+ +...+...... . ++...++.+++.+.++.|| +..|...+.+.+
T Consensus 313 ~~~~~g~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~----~----l~~~~~~~~~G~l~~~~G~--~~~f~~~~~~~~ 380 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMA-LCNRSFS-ATQYALLSALA----S----VGRVYVGPTSGYLVEAYGW--PGFYLMTVVIAL 380 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCCc-HHHHHHHHHHH----H----HHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHH
Confidence 445555555554434 5554422 12112222221 2 3333333445555555555 466777776666
Q ss_pred HHHHHH
Q 019522 210 IGMVII 215 (340)
Q Consensus 210 ~~~~~~ 215 (340)
+..++.
T Consensus 381 ~~~~~~ 386 (402)
T PRK11902 381 PGLALL 386 (402)
T ss_pred HHHHHH
Confidence 655554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-08 Score=86.38 Aligned_cols=90 Identities=9% Similarity=0.053 Sum_probs=68.2
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc-cchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG 134 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~ 134 (340)
..+.|.+.++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+..+..+.+++. ...+.++..... ...+.
T Consensus 217 ~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 295 (355)
T TIGR00896 217 IGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL 295 (355)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence 4557888888999999999999998888999999999999999 56667777777777665 444544333222 45678
Q ss_pred HHHhhhhhhhhhh
Q 019522 135 GIATSLLFSAFES 147 (340)
Q Consensus 135 G~~~~~~~~~~~~ 147 (340)
|++.+..++...+
T Consensus 296 g~~~g~~~~~~~~ 308 (355)
T TIGR00896 296 GLGQGGAFPLALT 308 (355)
T ss_pred HHhhhhHhHHHHH
Confidence 9999888877655
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-08 Score=83.81 Aligned_cols=135 Identities=14% Similarity=0.143 Sum_probs=87.0
Q ss_pred HHHHHHHHh---hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHH
Q 019522 58 PYVYYLYST---YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (340)
Q Consensus 58 ~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l 133 (340)
...+.+.+| +|+++.+.+...+....+..++....+++.||+|+||.+..+..+..++. +....++... ...-++
T Consensus 161 ~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l 239 (310)
T TIGR01272 161 SFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLA 239 (310)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 345555543 68999999999999998888889999999999999999888877777765 4444443332 235568
Q ss_pred HHHHhhhhhhhhhhhhhcc-c-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHH
Q 019522 134 GGIATSLLFSAFESWLVAE-H-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA 205 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~-~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~ 205 (340)
.|++.+..+|...+ ...+ . ++.+... .... .+ .+|..+.|.+.+.+.+..+.+ ..+++..
T Consensus 240 ~g~~~s~i~P~~~s-~a~~~~~~~~~~as----ai~~----~~-~~Gg~i~P~l~G~lad~~g~~--~a~~v~~ 301 (310)
T TIGR01272 240 LGLFNSIMFPTIFS-LALNALGRHTSQGS----GILC----LA-IVGGAIVPLLQGSLADCLGIQ--LAFALPV 301 (310)
T ss_pred HHHHHHHHHHHHHH-HHHhhhhhhhhhhH----HHHH----HH-HhcchHHHHHHHHHHHhccch--HHHHHHH
Confidence 89999999998766 4433 3 2222321 1111 12 245555565555555544433 4555433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=88.54 Aligned_cols=144 Identities=11% Similarity=0.088 Sum_probs=103.6
Q ss_pred ChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhh
Q 019522 70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESW 148 (340)
Q Consensus 70 s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 148 (340)
++...|.+.+.+.+.-.+.-.+..++.+|+|.|+.++++..++++=. +++++++.+.+.+.+.+.|+-.+........
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk- 335 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK- 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34456778888777777777788999999999999999999999977 8899999999999999999999988887777
Q ss_pred hhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccc
Q 019522 149 LVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT 220 (340)
Q Consensus 149 ~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (340)
++++..++.. ....+..+...+..+|..+.+.+++.+.|+.|.+ ..|++.+.+.+...++....++
T Consensus 336 YI~~~fd~rl----sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~--~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 336 YITAHFDKRL----SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ--HTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHS-GGG----HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHhCCHhH----HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH--HHHHHHHHHHHHHHHHheeeec
Confidence 8877632223 3344555556677778888888888877776544 5566666655554444433333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-08 Score=88.79 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=95.7
Q ss_pred HhhhhHHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc--chHHHHH
Q 019522 53 DWLQGPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYKILM 128 (340)
Q Consensus 53 ~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~--~~~~~l~ 128 (340)
........+++.++ .|.+ ...+.+.....+.+.+..+++++++||+|+|+.+..+..+.+++. +..+. +|.+.++
T Consensus 241 ~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (428)
T PF13347_consen 241 FALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVL 319 (428)
T ss_pred hhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33334455555554 4544 566777777888888888999999999999999999999999877 55555 4889999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhccc------cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 019522 129 IGRILGGIATSLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (340)
Q Consensus 129 ~~r~l~G~~~~~~~~~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 187 (340)
+..++.|++.+..++...+ +++|. +...+..+...+.++...-++.+++..+.+.+..
T Consensus 320 i~~~l~gi~~~~~~~~~~a-~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 320 ILFILAGIGYGAFFVIPWA-MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred HHHHHhHhhhccccccccc-ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999877766 66653 1122345666677776777776666666554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=92.69 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=80.9
Q ss_pred HHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc--cchHHHHHHHHHH
Q 019522 58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH--SPQYKILMIGRIL 133 (340)
Q Consensus 58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~--~~~~~~l~~~r~l 133 (340)
.++|.+. +++|.+..+.+.+.+...++..++.++.|+++||+|||+++..+..+..+.. .... .++.+......++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4567777 4899999999999999999888999999999999999999888876666554 3222 2333444444444
Q ss_pred HHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCC
Q 019522 134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG 196 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~ 196 (340)
.+.......+.... ++.|. ++|+...+....... +|..+++.+.+.+.+..+++
T Consensus 376 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~--------~g~~lgp~l~g~l~~~~g~~ 432 (496)
T PRK03893 376 QQMLGQGISGLLPK-LIGGYFDTEQRAAGLGFTYNVGA--------LGGALAPILGALIAQRLDLG 432 (496)
T ss_pred HHHHhcccchhhHH-HHHhhCCHHHhhcccchhhhhhh--------HHHHHHHHHHHHHhccCChH
Confidence 44332222333323 55554 456664433333222 44455555555555555555
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=87.51 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=78.0
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHH-hhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc-----------ch
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGF-GSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-----------PQ 123 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~-----------~~ 123 (340)
....|.+.+++|.++++.+.+..... +...++.+++|++.||+|||+.+..+.++.+++. ...+. ++
T Consensus 229 ~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (356)
T TIGR00901 229 TVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH 308 (356)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 45566777779999999998776544 4566777789999999999999988888777655 33321 45
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHH
Q 019522 124 YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWL 163 (340)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~ 163 (340)
.+.+....++.+++.+...+...+ ++.|. ++|++..+..
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~ 350 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVA-FLSKLSNPKFGATQMALL 350 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCCccHHHHHHH
Confidence 567777888999999988888766 76654 6666644443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-08 Score=84.57 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=89.1
Q ss_pred hHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc-------chHH--
Q 019522 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-------PQYK-- 125 (340)
Q Consensus 57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~-------~~~~-- 125 (340)
+..+|.+. ++||.++.+.|.......+.+.+..+..|+++||+|.+|++......++++. +.... ++..
T Consensus 238 s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~ 317 (417)
T COG2223 238 SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVF 317 (417)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHH
Confidence 34455554 5899999999998888888899999999999999999999998888887765 43332 2333
Q ss_pred --HHHHHHHHHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhh
Q 019522 126 --ILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA 203 (340)
Q Consensus 126 --~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~ 203 (340)
.++...+..|+|.|..+-.... +-. ++-|. ..+.....|. +|...-|..-....+..+ .+...|+.
T Consensus 318 ~~~~l~l~~~~G~GnGsvfk~Ip~-if~--~~~G~-------v~G~vga~G~-lGGf~lp~~~g~~~~~tg-~~~~~f~~ 385 (417)
T COG2223 318 VAVFLALFVFAGLGNGSVFKMIPV-IFP--KETGA-------VTGIVGAIGG-LGGFFLPLAFGVSLDLTG-SYTGAFML 385 (417)
T ss_pred HHHHHHHHHHhccCcchheeechH-HHH--hhhhH-------HHHHHHHhcc-ccccchhHHHHHHHHhcc-cHHHHHHH
Confidence 3445566666666666543311 111 11222 1221222222 454444444444444444 34456666
Q ss_pred HHHHHHHHHHHH
Q 019522 204 AACFLAIGMVII 215 (340)
Q Consensus 204 ~~~~~~~~~~~~ 215 (340)
.....+++..+.
T Consensus 386 ~~~~~~~a~v~~ 397 (417)
T COG2223 386 LLAFYLVALVLT 397 (417)
T ss_pred HHHHHHHHHHHH
Confidence 655555555544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.4e-08 Score=87.87 Aligned_cols=144 Identities=14% Similarity=0.041 Sum_probs=80.3
Q ss_pred HHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchH-------HHHHHHHHHHHHh-hhhccchHHHHHHH
Q 019522 60 VYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-------ACVTYCLTYILSC-ITKHSPQYKILMIG 130 (340)
Q Consensus 60 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~-------~l~~~~~~~~~~~-~~~~~~~~~~l~~~ 130 (340)
.|.+ .+++|.+..+.+.+.+...++..++.++.|+++||+|||+ .......+.++.. +....++.+...+.
T Consensus 275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 354 (476)
T PLN00028 275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVV 354 (476)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 4554 4568999999999988888889999999999999998752 2223333333333 34455565555555
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHH
Q 019522 131 RILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (340)
.++.+++.+...+...+ ++.+. +.++...+. ...+..+|+.+++.+... + ...+|+..|...+++.
T Consensus 355 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~--------~~~~g~lg~~i~~~l~~~--~-~~~~y~~~f~~~~~~~ 422 (476)
T PLN00028 355 MILFSIFVQAACGATFG-IVPFVSRRSLGVISGL--------TGAGGNVGAVLTQLLFFT--G-SSYSTETGISLMGVMI 422 (476)
T ss_pred HHHHHHHHHHhhhhhcc-cCcccChhhchhhhhh--------hhccccHHHHHHHHHHHh--c-CCccHhhHHHHHHHHH
Confidence 56666655544443333 44443 333332221 122334566666554331 1 1123445566555444
Q ss_pred HHHHHHH
Q 019522 209 AIGMVII 215 (340)
Q Consensus 209 ~~~~~~~ 215 (340)
+++.+..
T Consensus 423 ~i~~~~~ 429 (476)
T PLN00028 423 IACTLPV 429 (476)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-07 Score=84.71 Aligned_cols=98 Identities=17% Similarity=0.260 Sum_probs=71.3
Q ss_pred HHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc-----chHHHHHHHHH
Q 019522 60 VYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-----PQYKILMIGRI 132 (340)
Q Consensus 60 ~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~-----~~~~~l~~~r~ 132 (340)
.|.+. +++|.++.+.+.+.....+...+++++.|++.||+|+|+.+..+..+..++. +.... ++...+....+
T Consensus 229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (385)
T TIGR00710 229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMM 308 (385)
T ss_pred ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45444 5789999999999888888888899999999999999999988877776655 33321 33445556677
Q ss_pred HHHHHhhhhhhhhhhhhhccc--cccch
Q 019522 133 LGGIATSLLFSAFESWLVAEH--NKRGF 158 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~--~~r~~ 158 (340)
+.|++.+...+.... ...|. ++++.
T Consensus 309 ~~g~~~~~~~~~~~~-~~~~~~~~~~g~ 335 (385)
T TIGR00710 309 FVGIGNSMISSIAMA-YALEDFPHVAGT 335 (385)
T ss_pred HHHHHHHHHHHHHHH-HHhccCcccchH
Confidence 888888887776655 55554 34444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-08 Score=89.94 Aligned_cols=127 Identities=16% Similarity=0.193 Sum_probs=83.4
Q ss_pred HHHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh--hhhccchHHHHHHHHHHHH
Q 019522 59 YVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 59 ~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--~~~~~~~~~~l~~~r~l~G 135 (340)
..|.+ .+++|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.....+.. .....++.+.+.+..++.|
T Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (405)
T TIGR00891 260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339 (405)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444 45789999999999888888888899999999999999999988877654433 3334556666666667777
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS 194 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~ 194 (340)
+..+...+...+ ++.|. ++|++..+...... . +|..+++.+.+.+.++.|
T Consensus 340 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~----~----~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 340 MLVQGIWGILPK-HLGEYFPTDQRAAGLGFTYQLG----N----LGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHccchhhHHH-HHhhhCCcchhHHHhhHHHHHH----H----HHHHHHHHHHHHHHHhcc
Confidence 666655555544 56654 45555433332222 2 444555555555555444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.7e-08 Score=85.56 Aligned_cols=107 Identities=11% Similarity=0.130 Sum_probs=71.1
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh----hhhc--cchHHHHHHHH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKH--SPQYKILMIGR 131 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----~~~~--~~~~~~l~~~r 131 (340)
...|.+.+++|.++.+.|.......+...+++...+++.||+|+|+.........+++. .... .++....+...
T Consensus 224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (401)
T PRK11043 224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF 303 (401)
T ss_pred HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34667778899999999987766666666777788999999999987665554444432 1122 34555556666
Q ss_pred HHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHH
Q 019522 132 ILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSI 165 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~ 165 (340)
.+.|++.+..++.... ...|. +++++..+..+.
T Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~ 338 (401)
T PRK11043 304 CVMAAANGAIYPIVVA-QALRPFPQATGKAAALQNT 338 (401)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhCcccChHHHHHHHH
Confidence 7788888888777655 43332 456665444443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-08 Score=89.61 Aligned_cols=125 Identities=9% Similarity=0.059 Sum_probs=80.1
Q ss_pred HHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc--chHHHHHHHHHHHH
Q 019522 60 VYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYKILMIGRILGG 135 (340)
Q Consensus 60 ~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~--~~~~~l~~~r~l~G 135 (340)
.|.+.+ .+|.++...+.......+...+..++.+++.||+|+|+++..+.++..++. ...+. ++++.+.+..++.|
T Consensus 251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g 330 (448)
T PRK09848 251 SLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIAS 330 (448)
T ss_pred heeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 344433 466655544444444455566778889999999999999999998887776 44443 35666677788899
Q ss_pred HHhhhhhhhhhhhhhccc---c--ccc-hhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 136 IATSLLFSAFESWLVAEH---N--KRG-FEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~--~r~-~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
+|.+...+...+ +..|. + ++| +..+...+.++....+|.++|..+.+.+
T Consensus 331 ~G~~~~~~~~~a-l~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 331 IGQGVTMTVMWA-LEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHH-HHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888877655 54443 1 111 2224455556655556666666555544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.7e-08 Score=85.96 Aligned_cols=144 Identities=14% Similarity=0.010 Sum_probs=79.4
Q ss_pred hHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchH--HHHH------HHHHHHHHh-hhhccchHHH
Q 019522 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR--ACVT------YCLTYILSC-ITKHSPQYKI 126 (340)
Q Consensus 57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~--~l~~------~~~~~~~~~-~~~~~~~~~~ 126 (340)
..+.|.+. +++|.++.+.+.+.....+.+.++.++.|+++||+|||+ .... +.....+.. .....++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (399)
T TIGR00893 235 LTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYA 314 (399)
T ss_pred HHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 44555554 568999999999988888888889999999999999996 1111 111111111 1122334444
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC-CCcchhhh
Q 019522 127 LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAPFD 202 (340)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~-~~~~~~~~ 202 (340)
......+.+.+.+ ..+...+ ++.|. ++|+...+...... . +|..+++.+.+.+.+..+ |+ ..+.
T Consensus 315 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~----~----~g~~~~~~i~g~l~~~~g~~~--~~~~ 382 (399)
T TIGR00893 315 ALALVALGFFGLG-AGAIGWA-LISDNAPGNIAGLTGGLINSLG----N----LGGIVGPIVIGAIAATTGSFA--GALM 382 (399)
T ss_pred HHHHHHHHHhchh-hhhHHHH-HHHhhcChhHHHHHHHHHHHHH----H----HhhhhhhHHhhhhccCCCchh--HHHH
Confidence 4444444444444 4555545 66665 44555333333322 2 444555555555555444 44 4455
Q ss_pred hHHHHHHHHH
Q 019522 203 AAACFLAIGM 212 (340)
Q Consensus 203 ~~~~~~~~~~ 212 (340)
..+...++..
T Consensus 383 ~~~~~~~~~~ 392 (399)
T TIGR00893 383 VVAALALIGA 392 (399)
T ss_pred HHHHHHHHHH
Confidence 5544444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.4e-08 Score=82.81 Aligned_cols=152 Identities=17% Similarity=0.130 Sum_probs=91.9
Q ss_pred HHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc--cchHHHHHHHHHHHH-Hh-hhhccc--hHHHHHHHHHHHH
Q 019522 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYIL-SC-ITKHSP--QYKILMIGRILGG 135 (340)
Q Consensus 62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~~~~~~~~~-~~-~~~~~~--~~~~l~~~r~l~G 135 (340)
++.|+.|.|..+.++..+..-.++..+.+++|+++||. |||.+..+...+... +. ..-+++ |+....++.++.|
T Consensus 278 YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iG 357 (448)
T COG2271 278 YLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIG 357 (448)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999997 666655444433333 33 333344 4577777888888
Q ss_pred HHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
+..-+..-.. .....|..++.. ..+..+.....++.+|...++...+++.+..||.+. |.+..+.++++.++.
T Consensus 358 f~IyGPqmLi-Gl~a~e~~pK~A----aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~--Fi~~~~~a~l~~lll 430 (448)
T COG2271 358 FLIYGPQMLI-GLAAAEFVPKKA----AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGG--FIVLSIAALLAILLL 430 (448)
T ss_pred HHHhhHHHHH-HHHHhccccHhh----ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcch--HHHHHHHHHHHHHHH
Confidence 7654443222 213445533322 112222222345545777777777777777666644 544444444444444
Q ss_pred hcccc
Q 019522 216 LSSWT 220 (340)
Q Consensus 216 ~~~~~ 220 (340)
.+.+.
T Consensus 431 ~~~~~ 435 (448)
T COG2271 431 LPVWN 435 (448)
T ss_pred HHHHh
Confidence 34444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-07 Score=83.45 Aligned_cols=148 Identities=14% Similarity=0.027 Sum_probs=93.3
Q ss_pred HHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhh
Q 019522 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSL 140 (340)
Q Consensus 62 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~ 140 (340)
...+.+|.++.+.|.+.....++..++++..+++.||.++|+++..+... ++.. ...+.++++...+..++.|++.+.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 34556899999999999988888888999999999999999988877543 3333 445667777777778889998888
Q ss_pred hhhhhhhhhhccc--c-c-cchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHh
Q 019522 141 LFSAFESWLVAEH--N-K-RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (340)
Q Consensus 141 ~~~~~~~~~i~~~--~-~-r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
..+...+ .+.|. + . +|+.. +..+....++..++..+...+ ...+-+++..+...+.+........
T Consensus 310 ~~~~~~~-~~q~~~~~~~~~g~~~----a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~- 378 (393)
T PRK11195 310 FVVPMNA-LLQHRGHVLVGAGHSI----AVQNFNENLAMLLMLGLYSLL-----VKLGVPVVAVIVGFGLLVALAMALL- 378 (393)
T ss_pred hhhhHHH-HHHhhCcccccchhHH----HHHhHHHHHHHHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHH-
Confidence 7766555 44443 1 1 34433 333434444444444444333 2345565555555555443333333
Q ss_pred ccccc
Q 019522 217 SSWTE 221 (340)
Q Consensus 217 ~~~~~ 221 (340)
+++.|
T Consensus 379 ~~~~~ 383 (393)
T PRK11195 379 WRWHR 383 (393)
T ss_pred HHHHH
Confidence 34433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.1e-08 Score=86.69 Aligned_cols=147 Identities=14% Similarity=0.040 Sum_probs=78.5
Q ss_pred HHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc--cchHHH-HHHH---HHHHHHhhhhccchHHHHHHH
Q 019522 58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRAC-VTYC---LTYILSCITKHSPQYKILMIG 130 (340)
Q Consensus 58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l-~~~~---~~~~~~~~~~~~~~~~~l~~~ 130 (340)
.+.|.+. +++|++..+.+...+...+++.++.++.|+++||+ ++|+.. .... ....+.......++.......
T Consensus 264 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK11663 264 DWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAAC 343 (434)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 4566666 56899999999888888888889999999999999 333332 2211 111112211112233333333
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
.+..|++........ .+...|. ++|+...+..+.... +|..++|.+.+++.++.+| ...|...+++
T Consensus 344 ~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~--------~g~~~~p~~~g~l~~~~g~--~~~f~~~~~~ 412 (434)
T PRK11663 344 FFTIGFFVFGPQMLI-GMAAAECSHKEAAGAATGFVGLFAY--------LGAALSGYPLAKVLEIWHW--TGFFVVISIA 412 (434)
T ss_pred HHHHHHHHhhHHHHH-HHHHHhcccHhhHHhHHHHHHHHHH--------HHHHHhcccHHHHHHhccc--HHHHHHHHHH
Confidence 444444322211111 2244553 344553333332222 5556666666666665554 4667666666
Q ss_pred HHHHHHHH
Q 019522 208 LAIGMVII 215 (340)
Q Consensus 208 ~~~~~~~~ 215 (340)
.++..+..
T Consensus 413 ~~~~~~~~ 420 (434)
T PRK11663 413 AGISALLL 420 (434)
T ss_pred HHHHHHHH
Confidence 55555444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-08 Score=89.16 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=49.8
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC 116 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 116 (340)
...|.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..+..
T Consensus 252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 310 (426)
T PRK12307 252 GLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFI 310 (426)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44777778889999999988888888888888999999999999999988887766654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-07 Score=80.22 Aligned_cols=147 Identities=18% Similarity=0.106 Sum_probs=89.3
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccccc-----chHHHHHHHHHHHHHh-hhhc----cchHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTYILSC-ITKH----SPQYKI 126 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G-----rr~~l~~~~~~~~~~~-~~~~----~~~~~~ 126 (340)
.+..|.+.+++|+++++.....+...+ --...++.|.++|-+- ||+-+.++.++..++. ..+. .++...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 345778889999999999887777666 4466788999999762 4445555666654443 3332 345666
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHH
Q 019522 127 LMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA 205 (340)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~ 205 (340)
..+.-++..+|.......+.+ .+.|. +++....+-.++.......+|..++..++ +.+.+..+.+ ..|.+.+
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa-~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~----G~l~~~~~~~--~~f~i~~ 161 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADA-LVVELARREPESRGDLQSFVWGVRSVGSLVGSLLS----GPLLDSFGPQ--GVFLISA 161 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhH-HHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh----hhhhhcCCCe--EEehHHH
Confidence 667778888999998888888 77776 22212122233333334444544444444 4444444444 4455554
Q ss_pred HHHHHH
Q 019522 206 CFLAIG 211 (340)
Q Consensus 206 ~~~~~~ 211 (340)
.+..+.
T Consensus 162 ~~~~l~ 167 (433)
T PF03092_consen 162 ALPLLM 167 (433)
T ss_pred HHHHHH
Confidence 444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-07 Score=82.42 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=81.6
Q ss_pred HhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccc----cccchHHHHHHHHHH-HHHh-hhhccchHH-
Q 019522 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCLTY-ILSC-ITKHSPQYK- 125 (340)
Q Consensus 53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~Grr~~l~~~~~~~-~~~~-~~~~~~~~~- 125 (340)
...+..+.|.+.++.|++....+.+-..+-+.+.+.+|+.|..+| ||||||.++...... .++. +..+++++.
T Consensus 48 wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~ 127 (498)
T KOG0637|consen 48 WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGL 127 (498)
T ss_pred HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhH
Confidence 334457788889999999999999989999999999999999999 689999887665554 3355 555554433
Q ss_pred ----------------HHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHH
Q 019522 126 ----------------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG 183 (340)
Q Consensus 126 ----------------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (340)
.+++..-+.-++.-.....+.+ ++.|. +++.+ . .++.++....+|+.+|..+++
T Consensus 128 ~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra-~L~Dl~~~d~~~~--~-Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 128 LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRA-LLADLARGDAKKT--R-ANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHH-HHHHhccChhhhh--c-cchhHHHHHHhcceeeeeccc
Confidence 2333334444455556666666 76664 11112 1 233344444455555555544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-08 Score=86.25 Aligned_cols=124 Identities=14% Similarity=0.032 Sum_probs=79.5
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccc-cccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD-KQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D-r~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G 135 (340)
.+.|.+.++.+.++.+.+.+.+...+.......+.+++.| |++.|+.+..+..+.+++. +.++.++++.+.+...+.+
T Consensus 229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 308 (400)
T PRK11646 229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY 308 (400)
T ss_pred HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3467777776667788888877766655555555556555 5676777777777777776 6667788877777778888
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
++.+...|...+ ++.|. ++|++..+..+. ....|..+|+.+++.+.
T Consensus 309 ~g~~~~~p~~~~-~~~~~~p~~~~g~~~g~~~~----~~~~g~~ig~~l~G~l~ 357 (400)
T PRK11646 309 IGSIIAEPARET-LSASLADARARGSYMGFSRL----GLALGGAIGYIGGGWLF 357 (400)
T ss_pred HHHHHHHccHHH-HHHhcCCcccchhhhhHHHH----HHHHHHHhcccchHHHH
Confidence 888877776655 55553 566664443333 33344444444444443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-07 Score=84.35 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=51.4
Q ss_pred HHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-h-hhcc-----chHHHHHHHH
Q 019522 59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I-TKHS-----PQYKILMIGR 131 (340)
Q Consensus 59 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~-~~~~-----~~~~~l~~~r 131 (340)
..|.+.++ +.+............+.+.+..|+.|+++||+|+||++..+.+...+.. . .... .+++.+.+..
T Consensus 274 ~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~ 352 (462)
T PRK15034 274 GFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVF 352 (462)
T ss_pred HHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 35555554 2333333333344556678888999999999999999998888776644 2 1122 2445444433
Q ss_pred ----HHHHHHhhhhhhh
Q 019522 132 ----ILGGIATSLLFSA 144 (340)
Q Consensus 132 ----~l~G~~~~~~~~~ 144 (340)
+..|+|.|..+-.
T Consensus 353 ~~l~~~~G~gngsvfk~ 369 (462)
T PRK15034 353 MGLFLTAGLGSGSTFQM 369 (462)
T ss_pred HHHHHHhcccchHHHHh
Confidence 4456666665533
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-07 Score=84.86 Aligned_cols=149 Identities=11% Similarity=0.041 Sum_probs=77.7
Q ss_pred hHHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccc--cchHHHH-HHHHHHHHHh-hhhc--cchHHHHHH
Q 019522 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACV-TYCLTYILSC-ITKH--SPQYKILMI 129 (340)
Q Consensus 57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~-~~~~~~~~~~-~~~~--~~~~~~l~~ 129 (340)
..+.|.+.++ .|.+..+.+.......+...++.++.|+++||+ +||+... ....+..++. .... .++.....+
T Consensus 273 ~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 352 (452)
T PRK11273 273 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMA 352 (452)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 4557777765 789999988887777777778888999999999 5554322 2222223332 2212 234444444
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHH
Q 019522 130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC 206 (340)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 206 (340)
..++.|.+........ .++..|. ++|+...+....... .|. ...++.+.+.+.++.+|+ ..|.+.+.
T Consensus 353 ~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~----~g~---~~~g~~v~g~l~~~~g~~--~~f~~~~~ 422 (452)
T PRK11273 353 CMIVIGFLIYGPVMLI-GLHALELAPKKAAGTAAGFTGLFGY----LGG---SVAASAIVGYTVDFFGWD--GGFMVMIG 422 (452)
T ss_pred HHHHHHHHHHhHHHHH-HHHHHHHcChhhhhhHHHHHHHHHH----HHH---HHhhhhhHHHHHHHhcch--HHHHHHHH
Confidence 4455555332221221 2133343 456664443332222 221 222444455555555544 55665555
Q ss_pred HHHHHHHHH
Q 019522 207 FLAIGMVII 215 (340)
Q Consensus 207 ~~~~~~~~~ 215 (340)
..+++.+..
T Consensus 423 ~~~~~~~~~ 431 (452)
T PRK11273 423 GSILAVILL 431 (452)
T ss_pred HHHHHHHHH
Confidence 554444443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-07 Score=84.57 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=68.7
Q ss_pred HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhh
Q 019522 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS 143 (340)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (340)
+++|.++.+.+.......++..++..+.|++.||+|+|+++..+..+.++.. +..+.++.. -...-.+.|++.+..+|
T Consensus 288 ~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P 366 (438)
T PRK10133 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYP 366 (438)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHH
Confidence 4689999999999999999888999999999999999999988877776665 444445432 24456789999999999
Q ss_pred hhhhhhhcc
Q 019522 144 AFESWLVAE 152 (340)
Q Consensus 144 ~~~~~~i~~ 152 (340)
...+ ...|
T Consensus 367 ~~~s-~a~~ 374 (438)
T PRK10133 367 TIFS-LGIK 374 (438)
T ss_pred HHHH-HHHc
Confidence 8877 5444
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-07 Score=83.80 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=45.0
Q ss_pred hHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHH
Q 019522 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI 113 (340)
Q Consensus 57 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~ 113 (340)
..+.|.+. +++|.+..+.+...+.......+.+++.|+++||+|||+.+.....+.+
T Consensus 263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~ 320 (432)
T PRK10406 263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAA 320 (432)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 34566665 4689999899888887777778888889999999999998877665443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-07 Score=80.27 Aligned_cols=90 Identities=10% Similarity=0.051 Sum_probs=59.5
Q ss_pred HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh--hh--hc-cchHHHHHHHHHHHHHH
Q 019522 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--IT--KH-SPQYKILMIGRILGGIA 137 (340)
Q Consensus 63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--~~--~~-~~~~~~l~~~r~l~G~~ 137 (340)
+.+++|.++.+.|.......+...++.++.|++.||+|||+.+..+..+..+.. +. .. ..+.+...+.-.+.+.+
T Consensus 221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T PRK11102 221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC 300 (377)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 445689999999999998888888899999999999999999988877654422 21 22 22444444444444444
Q ss_pred hhhhhhhhhhhhhccc
Q 019522 138 TSLLFSAFESWLVAEH 153 (340)
Q Consensus 138 ~~~~~~~~~~~~i~~~ 153 (340)
.+........ .+.|.
T Consensus 301 ~~~~~~~~~~-~~~~~ 315 (377)
T PRK11102 301 VSMISSNAMA-VILDE 315 (377)
T ss_pred HHHhhHHHHH-HHhcc
Confidence 4444343333 44443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-07 Score=74.99 Aligned_cols=129 Identities=19% Similarity=0.134 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHhhh---hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHH
Q 019522 39 KNNYLLVYSLMMAGDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS 115 (340)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~ 115 (340)
||..+......+...+.. +.+.|.+++++|+|.+|...+.....++.. .+++.|.+.||+|++.++.++.....++
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~-~G~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSY-FGILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 355555555555554433 455899999999999999999999888765 4789999999999999999999999888
Q ss_pred h-hhhc-------cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHH
Q 019522 116 C-ITKH-------SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFS 168 (340)
Q Consensus 116 ~-~~~~-------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~ 168 (340)
. .... .++++.+.+..++.|.+.+.........-+.+. ++||...+..-+..+
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~G 141 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFG 141 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHH
Confidence 7 3322 246677777777777776655444322123333 778887777777666
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-08 Score=86.80 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=72.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh-hc-cchHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 019522 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT-KH-SPQYKILMIGRILGGIATSLLFSAFESWLVA 151 (340)
Q Consensus 75 g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~-~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~ 151 (340)
+.+.....+...+..+++++++||+|+|+.+..+.....+.. .. .. .++.+.+++..++.|++.+...+...+ +++
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a-m~a 345 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS-MFS 345 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 344455556566777789999999999999988877665433 22 22 356777777888999999988877766 655
Q ss_pred cc-----cccc-hhhHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 019522 152 EH-----NKRG-FEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (340)
Q Consensus 152 ~~-----~~r~-~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 187 (340)
|. .+.| +..+...+.++....+|.++|+.+++.+.+
T Consensus 346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 1112 223444555555556666666666655443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.9e-07 Score=80.02 Aligned_cols=216 Identities=17% Similarity=0.095 Sum_probs=117.6
Q ss_pred HhhhhhhhhhhhhccccccchHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH--hhhhhhhhhhhhhccc---ccc
Q 019522 82 FGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIA--TSLLFSAFESWLVAEH---NKR 156 (340)
Q Consensus 82 ~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~~i~~~---~~r 156 (340)
.+...+.++..|.++||+|||..+........+...+.....++.++ +.++. .+.......+ +++|. ++|
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a-~vadis~~~~R 146 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFA-YVADISSEEER 146 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhh-heeeccchhHH
Confidence 45577888899999999999999999999888876333323333333 44432 2222333434 67765 555
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccc-------
Q 019522 157 GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES------- 229 (340)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 229 (340)
....+.....+. .+..++|.+++.+.+..+ ....|.+..+...+.........||+..++++.
T Consensus 147 ~~~~gll~~~~~--------~~~~~~p~~~~~~~~~~~--~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~ 216 (463)
T KOG2816|consen 147 SSSIGLLSGTFG--------AGLVIGPALGGYLVKFLG--IALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL 216 (463)
T ss_pred HHHHHHHHHHHH--------HHHhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc
Confidence 555554444444 333344444444333333 336778887777777777766777765443332
Q ss_pred ---hHHHHHHHHHH---HHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhh---HHHHHHHHHHHHHHHH
Q 019522 230 ---KDLLTQFRGAA---VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSL 300 (340)
Q Consensus 230 ---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 300 (340)
+.......+.. .+..++|..+.+.....+..........-..+.|.+..++.+.. ...+.......++..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~ 296 (463)
T KOG2816|consen 217 TPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLL 296 (463)
T ss_pred CCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111 12223344444444433333333222121346677777777764 3445555666666665
Q ss_pred HH-HHHhhCCCCc
Q 019522 301 AS-RLMARSPPRV 312 (340)
Q Consensus 301 ~g-~l~dr~g~~~ 312 (340)
.. .+...++.|+
T Consensus 297 ~~~~l~~~l~~~~ 309 (463)
T KOG2816|consen 297 LLPLLSSILGEKR 309 (463)
T ss_pred HHHHHHHHHhhhh
Confidence 55 6777777773
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=84.08 Aligned_cols=105 Identities=16% Similarity=0.117 Sum_probs=75.9
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHhhh-hccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT-KHSPQYKILMIGRILGG 135 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~-~~~~~~~~l~~~r~l~G 135 (340)
..+.|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.............+. ...++.....+..++.|
T Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 349 (398)
T TIGR00895 270 TNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349 (398)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 34577888899999999999888888888899999999999999995544443333333333 33556677777888999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHH
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQW 162 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~ 162 (340)
++.+...+...+ ++.|. ++|+...+.
T Consensus 350 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~ 378 (398)
T TIGR00895 350 FFVNGGQSGLYA-LMALFYPTAIRATGVGW 378 (398)
T ss_pred HHHHHHHHHHHH-HHhhcCCHHHHHHHHHH
Confidence 998888777755 66665 445553333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-07 Score=84.64 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=80.3
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh-----ccchHHHHHHHH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-----HSPQYKILMIGR 131 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~-----~~~~~~~l~~~r 131 (340)
.+.+++.+...-++...+.+.....+...++.+++++++||+|+|+.+..+..+..++. ... ..++.+.+++.-
T Consensus 252 ~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 331 (473)
T PRK10429 252 GFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAG 331 (473)
T ss_pred hheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34444444433345556666666656677788889999999999999988887766544 221 134566667777
Q ss_pred HHHHHHhhhhhhhhhhhhhccc------cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 132 ILGGIATSLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
++.|++.+...+...+ +++|. +...+..+...+..+...-++.++|+.+.+.+.
T Consensus 332 ~l~g~~~~~~~~~~~a-m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 332 ILLNIGTALFWVLQVI-MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888776655 55553 111223344555566556666666666555443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.1e-06 Score=71.55 Aligned_cols=266 Identities=15% Similarity=0.123 Sum_probs=140.0
Q ss_pred hHH-HHHHHHh-hCCChhhhH-HHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHH
Q 019522 57 GPY-VYYLYST-YGFGKGEIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI 132 (340)
Q Consensus 57 ~~~-~~~~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~ 132 (340)
.|+ .|++.+. .|++..|+. -++-...-.....-.+...+.|..+.|++++.+.+...+.. +.-+.++...+-+..+
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~ 102 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQF 102 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 588 5555554 899999985 34444444444555578899999999999999998887776 7778899999999999
Q ss_pred HHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH---HH
Q 019522 133 LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF---LA 209 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~ 209 (340)
.-|++.+.. .+..+ ++-...++..... ..+........|..++.++|..+... .+........+.... .+
T Consensus 103 ~yg~~~a~e-vay~s-Yiys~v~~~~yq~-vts~~raa~l~g~~~s~~lgQllvs~----~~~sy~~L~~isl~~~~~a~ 175 (412)
T PF01770_consen 103 FYGLATAAE-VAYYS-YIYSVVDKEHYQK-VTSYTRAATLVGRFISSLLGQLLVSF----GGVSYFQLNYISLASVSLAL 175 (412)
T ss_pred HHHHHHHHH-HHHHH-HheeecCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHH
Confidence 999988876 33334 4322211111111 22223333444444555555544432 333333333333322 22
Q ss_pred HHHHHHhccccc-----ccC---------CCc------cch---------------HHHHHHHHHHHHHhhchhHHHHHH
Q 019522 210 IGMVIILSSWTE-----NYG---------DPS------ESK---------------DLLTQFRGAAVAIASDEKIALLGA 254 (340)
Q Consensus 210 ~~~~~~~~~~~~-----~~~---------~~~------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 254 (340)
+..+++ |..+. ++. +.+ +++ +..+...+..+...++|+++...+
T Consensus 176 ~~~~fL-P~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSl 254 (412)
T PF01770_consen 176 LIALFL-PMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSL 254 (412)
T ss_pred HHHHHc-CCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 222222 21110 000 000 000 001122223444556777776655
Q ss_pred HHHHhhhhHHHHHHhhccccccCC---CC--chhhHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHH
Q 019522 255 IQSLFEGSMYTFVFLWTPALSPND---EE--IPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLL 329 (340)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 329 (340)
-..+...+.+. +.++....-++. .+ .-.|.+-....+.+.++.+..|++..+..+.....+.....+.+.++.+
T Consensus 255 WWa~atcgy~q-v~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~l 333 (412)
T PF01770_consen 255 WWAFATCGYYQ-VINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFL 333 (412)
T ss_pred HHHHHHhHHHH-HHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433333 344444333222 11 1115666677777888888999985555554323334444444444444
Q ss_pred HH
Q 019522 330 PI 331 (340)
Q Consensus 330 ~~ 331 (340)
..
T Consensus 334 m~ 335 (412)
T PF01770_consen 334 MS 335 (412)
T ss_pred HH
Confidence 33
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-07 Score=81.12 Aligned_cols=165 Identities=14% Similarity=0.026 Sum_probs=105.2
Q ss_pred HHHHHHHHhhhhH--HHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc
Q 019522 46 YSLMMAGDWLQGP--YVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS 121 (340)
Q Consensus 46 ~~~~~~~~~~~~~--~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~ 121 (340)
..-....|+.... +...+. +++|++..++..+.....+.+.+++.+.|++.||+|.|+++..+.++..+.+ ...+.
T Consensus 259 iA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~ 338 (438)
T COG2270 259 IARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL 338 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc
Confidence 3333445565532 222333 4899999999988888888899999999999999999999999999998877 44444
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcc
Q 019522 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (340)
Q Consensus 122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~ 198 (340)
.....+.+.-.+.|...|..+....+ +..+. ++.++..+. +++.-- .+..++|.+-..+.+..+ .-|
T Consensus 339 ~~~~~f~i~gll~g~s~G~~qA~SRS-y~~~lvp~~k~~~fFgl----yaltgr----a~S~~gp~lv~v~t~iTg-~~r 408 (438)
T COG2270 339 EGELDFWILGLLVGTSLGGAQASSRS-YLARLVPKGKEGRFFGL----YALTGR----AASFLGPFLVAVITQITG-SSR 408 (438)
T ss_pred cccHHHHHHHHHHHHhcchHHHHHHH-HHHHhCCCccccceeeh----hhhhhh----HHHHHHHHHHHHHHHHhc-chh
Confidence 44556666678999999999999888 76665 444443322 332222 333444444444333232 233
Q ss_pred hhhhhHHHHHHHHHHHHhccccc
Q 019522 199 APFDAAACFLAIGMVIILSSWTE 221 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~ 221 (340)
.-+.....+..+..... .+.|+
T Consensus 409 ~g~~~i~vll~iGl~~L-~~v~~ 430 (438)
T COG2270 409 AGVLSIIVLLLIGLLLL-LRVKV 430 (438)
T ss_pred hHHHHHHHHHHhhHhhE-EeecC
Confidence 44444444444444444 34443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-07 Score=84.86 Aligned_cols=122 Identities=12% Similarity=0.158 Sum_probs=83.8
Q ss_pred HHHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh--c--cchHHHHHHHH
Q 019522 58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK--H--SPQYKILMIGR 131 (340)
Q Consensus 58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~--~--~~~~~~l~~~r 131 (340)
.+.|.+.+ .+|.++.+.|.......++..++.++.|++.||+|||+.+..+..+.+++. +.. . ..+.+.+....
T Consensus 276 ~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (485)
T TIGR00711 276 YLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQ 355 (485)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 34666655 479999999999888888888899999999999999999999988887776 443 2 23456667778
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHh
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGL 184 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~ 184 (340)
++.|++.+...+.... ...+. ++++...+.. +....+|..+|+.+.+.
T Consensus 356 ~l~g~g~~~~~~~~~~-~~~~~~~~~~~g~~~~~~----~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 356 FIRGFGMGCFFMPLTT-IALSGLPPHKIARGSSLS----NFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHHHHH-HHHhcCCHHHHhHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 8999998887655544 33332 4455533333 33333444444444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-07 Score=85.12 Aligned_cols=122 Identities=20% Similarity=0.085 Sum_probs=84.2
Q ss_pred HHHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc---cchHHHHHHHHHH
Q 019522 59 YVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQYKILMIGRIL 133 (340)
Q Consensus 59 ~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~---~~~~~~l~~~r~l 133 (340)
+.|.+ ++.+|.|+.+.|.......+...+++++.|++.||+|+|+.+..+..+.+++. +... .++.+......++
T Consensus 281 ~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 360 (495)
T PRK14995 281 LMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMAL 360 (495)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 44544 44589999999999888888888999999999999999999988888877765 3322 3455566677889
Q ss_pred HHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
.|++.+...+.... .+.+. ++++...+ ..+....+|..+|..+.+.+
T Consensus 361 ~G~g~g~~~~~~~~-~~~~~~~~~~~g~~~~----~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 361 LGFSAASALLASTS-AIMAAAPPEKAAAAGA----IETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHhHHHHHHHHHH-HHHhcCCHHhcchHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 99999988766544 33332 55555333 33434444444555444433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-07 Score=92.35 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=83.7
Q ss_pred HHHHH-HHHhhCCChh-hhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHH
Q 019522 58 PYVYY-LYSTYGFGKG-EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG 134 (340)
Q Consensus 58 ~~~~~-~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~ 134 (340)
...|. +.+++|.+.. +.|++.+...++..+++++.|+++||+++|+.+.++.++.+++. +..+.++.+.+++..++.
T Consensus 253 ~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1146)
T PRK08633 253 ANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF 332 (1146)
T ss_pred HhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444 4567899998 89999888888888888999999999999999888888877776 666677888888888999
Q ss_pred HHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHH
Q 019522 135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFS 168 (340)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~ 168 (340)
|++.+...+...+ ++.+. +.|+...+.......
T Consensus 333 g~~~~~~~~~~~~-~~~~~~p~~~rg~~~~~~~~~~~ 368 (1146)
T PRK08633 333 GFSAGLFIVPLNA-LIQFRAPEKELGKVLAANNFLQN 368 (1146)
T ss_pred HHHHHHhhHHHHH-HHhhcCCccchhhhhHHHHHHHH
Confidence 9998887776655 55543 556665554444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=83.37 Aligned_cols=151 Identities=12% Similarity=-0.009 Sum_probs=81.5
Q ss_pred HHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHH--------HHHHHHHH--HHHh-hhhc-cchH
Q 019522 58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA--------CVTYCLTY--ILSC-ITKH-SPQY 124 (340)
Q Consensus 58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~--------l~~~~~~~--~~~~-~~~~-~~~~ 124 (340)
.++|.+. +++|.+..+.|...+...++..+++++.|+++||+++|+. +..+.... ++.. .... ..+.
T Consensus 282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (465)
T TIGR00894 282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF 361 (465)
T ss_pred HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 4467665 4689999999999999899899999999999999875421 11111111 1111 1122 2334
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCC-cchhhhh
Q 019522 125 KILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG-PVAPFDA 203 (340)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~-~~~~~~~ 203 (340)
...++.-.+.+.+.+...+.... ...|..++ ..+...+.. +....+++.++|.+.+.+.+..+|+ |...|.+
T Consensus 362 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~--~~g~~~g~~----~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~ 434 (465)
T TIGR00894 362 YLTIIILTLANAVSSGPLAGVLI-NSLDLAPR--FLGFIKGIT----GLPGFIGGLIASTLAGNILSQDSKNVWLIVFLI 434 (465)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhh-chhhcChh--HHHHHHHHH----HHHHHHHHHHHHHhhheeeCCCCchHHHHHHHH
Confidence 44444444445444443333212 22233222 222222222 2333367777777777666544333 5566777
Q ss_pred HHHHHHHHHHHH
Q 019522 204 AACFLAIGMVII 215 (340)
Q Consensus 204 ~~~~~~~~~~~~ 215 (340)
.+...++..++.
T Consensus 435 ~~~~~~i~~i~~ 446 (465)
T TIGR00894 435 MAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHHHHHe
Confidence 666666555444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-07 Score=79.48 Aligned_cols=107 Identities=23% Similarity=0.265 Sum_probs=79.2
Q ss_pred hhHHHHHH-HHhhCCC-hhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh---hccchHHHHHH
Q 019522 56 QGPYVYYL-YSTYGFG-KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMI 129 (340)
Q Consensus 56 ~~~~~~~~-~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~---~~~~~~~~l~~ 129 (340)
...+.|.+ .+++|.+ ..+.+.......+.+.++.++.|++.||+|+|+..........+.. .. ...++......
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLII 304 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHH
T ss_pred hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34557775 7889999 7899988888888888889999999999999888777777666644 32 22345667777
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHH
Q 019522 130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWL 163 (340)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~ 163 (340)
..++.|++.+...+...+ ++.|. +++++..+..
T Consensus 305 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~ 340 (352)
T PF07690_consen 305 ALFLIGFGFGIVFPILFS-LIQELVPPEYRGTAFGLF 340 (352)
T ss_dssp HHHHHHHHHHHHCHHHHH-HHHCCCHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHH
Confidence 888899998888887766 66665 4555533333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-06 Score=74.32 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc-cchHHHHHHHHHHHHHh-h
Q 019522 40 NNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-I 117 (340)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-~ 117 (340)
|.+.+...+-..........+|.+..|-|+|..+.|.+.+...+.....+...-.+++|. ++|+..+....++.++. .
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G 290 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVG 290 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 444333333333333334559999999999999999999999888888888888888865 55666666666666666 4
Q ss_pred hhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCC
Q 019522 118 TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG 196 (340)
Q Consensus 118 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~ 196 (340)
+.+.|.-..+.- -++.|+|.|..++.... ++.+. ++.....+.....++.++.++ ..+|.+.+++.|..| +
T Consensus 291 ~~~~P~~~~~lw-~~llG~G~G~~F~laL~-li~~rs~~a~~Aa~LSgmaQg~GYllA-----a~GP~l~G~lhDa~g-s 362 (395)
T COG2807 291 LLLAPGQLPILW-ALLLGLGQGGAFPLALT-LILLRSSDAAIAAALSGMAQGVGYLLA-----AFGPWLFGFLHDATG-S 362 (395)
T ss_pred HHHhhhhHHHHH-HHHHhCccchHHHHHHH-HHHhhcCChHHHHHHHHHhhhhhHHHH-----hhhhhhHhHHHHhcC-C
Confidence 445554332222 48999999999998877 66554 333344444444555444433 344555555554433 3
Q ss_pred cchhhhhHHHHHHHHHH
Q 019522 197 PVAPFDAAACFLAIGMV 213 (340)
Q Consensus 197 ~~~~~~~~~~~~~~~~~ 213 (340)
|..+....+...+...+
T Consensus 363 w~~~~~~l~~~~i~m~i 379 (395)
T COG2807 363 WSAPLVLLALATLLMLI 379 (395)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555444444433333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-06 Score=78.36 Aligned_cols=115 Identities=8% Similarity=-0.060 Sum_probs=63.6
Q ss_pred hhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccc--hHHHHHHHHHHHHHHhhhhhhhhhh
Q 019522 71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP--QYKILMIGRILGGIATSLLFSAFES 147 (340)
Q Consensus 71 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~ 147 (340)
+...+.+.....+.+.++.+++++++||+|+|+.+..+....++.. +..+.+ +...+.+.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666677777889999999999998776555444433 322222 2223444456677776665544333
Q ss_pred hhhccc------cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 148 WLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 148 ~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
+++|. +...+..+...+..+...-+|.++|..+++.+.
T Consensus 342 -m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 342 -MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred -HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 111222233344445555566666666655443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-06 Score=77.31 Aligned_cols=93 Identities=15% Similarity=0.062 Sum_probs=60.5
Q ss_pred HHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHH-Hh-hhhc--cchHHHHHHHHHHH
Q 019522 60 VYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKH--SPQYKILMIGRILG 134 (340)
Q Consensus 60 ~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-~~~~--~~~~~~l~~~r~l~ 134 (340)
.+.+.+ .+|.++.+.+.+......+..+++.+.+++.||++++............ .. .... ..+.+.+.....+.
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (394)
T PRK11652 230 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALF 309 (394)
T ss_pred ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 344444 4899999999888777777777778889999999843333222222222 11 1121 34556677778899
Q ss_pred HHHhhhhhhhhhhhhhccc
Q 019522 135 GIATSLLFSAFESWLVAEH 153 (340)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~ 153 (340)
|++.+...+...+ ...|.
T Consensus 310 ~~g~~~~~~~~~~-~~~~~ 327 (394)
T PRK11652 310 FFGAGMLFPLATS-GAMEP 327 (394)
T ss_pred HHHHHHHHHHHHH-HHHhh
Confidence 9999988887766 55554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-07 Score=82.76 Aligned_cols=146 Identities=15% Similarity=0.000 Sum_probs=80.7
Q ss_pred HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchH--HHHHHHHHHHHHHhhh
Q 019522 64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQY--KILMIGRILGGIATSL 140 (340)
Q Consensus 64 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~--~~l~~~r~l~G~~~~~ 140 (340)
.++++.+......+. .+....+.++.+++.||+|||+.+..+.++.+++. +..+.++. +......++.+++.+.
T Consensus 350 ~~~~~~~~~~~~~~~---~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (505)
T TIGR00898 350 LGNLGGNIYLDLFIS---GLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITS 426 (505)
T ss_pred ccccCCChHHHHHHH---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 344554433333322 23344566678999999999999999988888876 55554433 4444455666666666
Q ss_pred hhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhc
Q 019522 141 LFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILS 217 (340)
Q Consensus 141 ~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (340)
.++.... +..|. +.|+...+....... +|.+++|.+.. +.+ . .+..++.+.+...++..+.. .
T Consensus 427 ~~~~~~~-~~~e~~p~~~r~~~~g~~~~~~~--------ig~~i~p~i~~-~~~-~--~~~~~~~~~~~~~~~~~~~~-~ 492 (505)
T TIGR00898 427 AFQMVYL-YTAELYPTVVRNLGVGVCSTMAR--------VGSIISPFLVY-LGE-K--WLFLPLVLFGGLALLAGILT-L 492 (505)
T ss_pred HHHHHHH-HhcccccHHHHhhhHhHHHHHHH--------HHHHHHhHHHH-HHH-H--HHhhHHHHHHHHHHHHHHHH-H
Confidence 6665544 66775 445554333333222 44444554444 221 1 22245555555554444444 3
Q ss_pred ccccccCCC
Q 019522 218 SWTENYGDP 226 (340)
Q Consensus 218 ~~~~~~~~~ 226 (340)
..||+++++
T Consensus 493 ~lpet~~~~ 501 (505)
T TIGR00898 493 FLPETKGVP 501 (505)
T ss_pred cCcCCCCCC
Confidence 557665543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.1e-06 Score=74.79 Aligned_cols=123 Identities=11% Similarity=0.159 Sum_probs=67.4
Q ss_pred HHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh--h---ccchHHHHHHHH
Q 019522 59 YVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--K---HSPQYKILMIGR 131 (340)
Q Consensus 59 ~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~--~---~~~~~~~l~~~r 131 (340)
+.|.+.+ .+|.++.+.++.......+..+++.+.+.+.+|..+++.......+..++. +. . ..+++...++..
T Consensus 240 ~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 319 (413)
T PRK15403 240 VSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGT 319 (413)
T ss_pred hChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 3565555 468999999998776776666767777776544444444332222222222 11 1 223344456778
Q ss_pred HHHHHHhhhhhhhhhhh-hhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 132 ILGGIATSLLFSAFESW-LVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~-~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
++.++|.+...+...+. +..+..++|...+..+.. ...+...+...++.+
T Consensus 320 ~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~----~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 320 SLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMV----ILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 88899988887776531 222334566644444333 333333444444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-06 Score=78.43 Aligned_cols=60 Identities=10% Similarity=-0.008 Sum_probs=44.3
Q ss_pred hHHHHHHHHhh--CCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHH-HHHHHHHHHHHh
Q 019522 57 GPYVYYLYSTY--GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA-CVTYCLTYILSC 116 (340)
Q Consensus 57 ~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~ 116 (340)
..++|.+.+++ +.++.+.+.......+++.++.++.|+++||++||+. .........++.
T Consensus 262 ~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~ 324 (412)
T TIGR02332 262 NIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW 324 (412)
T ss_pred HHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence 45688888875 5677888888888888888888899999999997775 333433444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-06 Score=78.41 Aligned_cols=46 Identities=9% Similarity=-0.030 Sum_probs=37.1
Q ss_pred HHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchH
Q 019522 58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR 103 (340)
Q Consensus 58 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~ 103 (340)
.+.|.+.++ .|.++.+.++......+.+.++.++.|+++||+++|+
T Consensus 272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 456676664 6899999998888888878888899999999996543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-05 Score=74.59 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=100.6
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccc-ccchHHHHHHHHHHHHHh-hhhccc--------hHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSP--------QYKI 126 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-~~~~~~--------~~~~ 126 (340)
..+..++.+.+|+++++...++........+.+.+.|.++|+ +||++.+..+.++..++. +.++.. ....
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 344556677889999988888777777788888899999996 599999999999988887 554431 1223
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccc-cc--cchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc-----CCCcc
Q 019522 127 LMIGRILGGIATSLLFSAFESWLVAEH-NK--RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-----SLGPV 198 (340)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~--r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~-----~~~~~ 198 (340)
.+++-.+..+|.|..-|...+ ...|. ++ +.+. ...++..++.++ +|..++..+..++.+.. .+.|.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsa-f~gdqf~~~~~~~~----~s~F~~fY~~iN-iGSlis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSA-FGGDQFEERQLSLR----SRFFSFFYFAIN-AGSLISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred HHHHHHHHHhhccccccCchh-hhHhhcCccchhHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccCcchH
Confidence 556677788888888887766 77764 22 2222 233443333333 55565555555544221 12355
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 019522 199 APFDAAACFLAIGMVIIL 216 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~ 216 (340)
..|.+.++..+++.+...
T Consensus 162 ~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 162 LAFGVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777766666555543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-06 Score=87.68 Aligned_cols=123 Identities=10% Similarity=-0.120 Sum_probs=84.0
Q ss_pred HHHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc--------------
Q 019522 58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-------------- 121 (340)
Q Consensus 58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~-------------- 121 (340)
...|.+.+ .+|.++.+.|.+.+...++..+++++.|+++||.++++.+..+.++.++.. ...+.
T Consensus 246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (1140)
T PRK06814 246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI 325 (1140)
T ss_pred HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence 34555554 579999999999999999889999999999998887776666555554433 23222
Q ss_pred ------chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 122 ------PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 122 ------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
++.+.+.+..++.|++.+...+...+ ++.+. +.+|+..+..+.... ++..+|+.+.+.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~~~G~v~g~~~~~~~----~~~~ig~~~~g~l 393 (1140)
T PRK06814 326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFA-ALQAWANPAHRARVIAANNVLNA----AFMVAGTIILALL 393 (1140)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhHHHHHH-HHHhhCCcccceeeeHHHHHHHH----HHHHHHHHHHHHH
Confidence 66677788888999998888776655 55544 667775555544433 4444444444444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-06 Score=75.07 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=77.5
Q ss_pred hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc--chHHHHHHHHHHHHHHhhhhhh
Q 019522 67 YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYKILMIGRILGGIATSLLFS 143 (340)
Q Consensus 67 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~--~~~~~l~~~r~l~G~~~~~~~~ 143 (340)
.|.++.+.............++.+++.++.+|+|+|+++..+.++.+++. +..+. ++...+++..++.+++.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 34444444455555555444446789999999999999999999999987 55554 4678888888999999998877
Q ss_pred hhhhhhhccc------cccchhhHHHHHHHHHHHHhhhhHHHHHHHh
Q 019522 144 AFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGL 184 (340)
Q Consensus 144 ~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~ 184 (340)
..-+ +++|. +...+..+...+..+...=+|.+++..+.+.
T Consensus 347 l~wa-m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 347 LPWA-MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred ccHH-HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655 65543 2223344455555555555555555544443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-06 Score=72.21 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=60.1
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccch---HHHHH-HHHHHHHHh-hhhccchHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK---RACVT-YCLTYILSC-ITKHSPQYKILMIGR 131 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr---~~l~~-~~~~~~~~~-~~~~~~~~~~l~~~r 131 (340)
...+|.+.++.|.+.. .+.........+.++ .++++||.+|| +.... .....++.. ..++.++.......-
T Consensus 212 ~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (368)
T TIGR00903 212 AIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFI 287 (368)
T ss_pred HHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 3457888888888764 566666666656655 46777777543 33332 333334433 334444444444455
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHH
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFS 168 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~ 168 (340)
.+.+++....++...+ +..|. +.|+...++......
T Consensus 288 ~l~~~~~~~~~~~~~~-~~~~~~p~~~rgt~~G~~~~~g~ 326 (368)
T TIGR00903 288 GIAGLLMLPAYAIIMD-WIGKFCDKELHGKAAGAIGFTSR 326 (368)
T ss_pred HHHHHhhhhhHHHHHH-HHHHhcchhhcCcccchhhHHHH
Confidence 5666666655555444 66665 566775555444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3e-06 Score=76.08 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=94.6
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc---c-chH--H---HH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---S-PQY--K---IL 127 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~---~-~~~--~---~l 127 (340)
-+...+.++-|++..+..+..........+...++..+.||+|||+.++.+..+..+.. ++.. . +.. + ..
T Consensus 291 ~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~ 370 (485)
T KOG0569|consen 291 FYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC 370 (485)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44677888999999998888888777788888899999999999999999999888765 3321 1 112 1 12
Q ss_pred HHHHHHHHHHhhhhhhhhhhh-hhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhh
Q 019522 128 MIGRILGGIATSLLFSAFESW-LVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA 203 (340)
Q Consensus 128 ~~~r~l~G~~~~~~~~~~~~~-~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~ 203 (340)
+++.++..++.+...... ++ +.+|. ..|....++.... ..+.+.+-...-+.+.+. ++. +.|..
T Consensus 371 i~~~~~~~~~f~~G~gpi-~~fi~aELf~~~~R~aa~s~~~~~----~w~~~fiv~~~fp~l~~~------~g~-~~fil 438 (485)
T KOG0569|consen 371 IAAIFLFIISFAIGPGPI-PWFIGAELFPQSARSAAQSVATAV----NWLSNFIVGFAFPPLQNV------IGP-YVFIL 438 (485)
T ss_pred HHHHHHHHHhhhcCCCch-hHHHHHHhCCccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------hcc-hhhHH
Confidence 333444444333332222 32 45665 3444432222222 222222222333333332 222 44556
Q ss_pred HHHHHHHHHHHHhcccccccCCCcc
Q 019522 204 AACFLAIGMVIILSSWTENYGDPSE 228 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (340)
..+...+..+..++..||++++..+
T Consensus 439 F~i~~~~~~i~~~~~lPETkgr~~~ 463 (485)
T KOG0569|consen 439 FVIPLAIFLIYLYRYLPETKGRTPY 463 (485)
T ss_pred HHHHHHHHHHHHHHhCcccCCCCHH
Confidence 6666666667777889999876543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.6e-06 Score=73.89 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=63.8
Q ss_pred hHHHHHHHHhh--CCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHH
Q 019522 57 GPYVYYLYSTY--GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (340)
Q Consensus 57 ~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l 133 (340)
..+++.+.++. +.+....+...+.......++..+.|++.||+++|+++........+.+ +..+.++... ...-.+
T Consensus 252 ~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~ 330 (410)
T TIGR00885 252 WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTL 330 (410)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 34455555554 3333334444455555566778889999999999999888888887776 5556655443 456678
Q ss_pred HHHHhhhhhhhhhhhhhcc
Q 019522 134 GGIATSLLFSAFESWLVAE 152 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~ 152 (340)
.|++.+..+|...+ ...+
T Consensus 331 ~glf~s~~fp~i~s-l~~~ 348 (410)
T TIGR00885 331 CSAFMSLMFPTIYG-IALK 348 (410)
T ss_pred HHHHHHHHHHHHHH-HHHh
Confidence 88888888888766 4443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=80.06 Aligned_cols=157 Identities=13% Similarity=0.002 Sum_probs=77.4
Q ss_pred HHHHHHhhCCChhhhHH------------HHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhcc----c
Q 019522 60 VYYLYSTYGFGKGEIGQ------------LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS----P 122 (340)
Q Consensus 60 ~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~----~ 122 (340)
.|.+.++.|.+..+.+. ......++..++..+.++++||+|||+.++.+..+.+++. +..+. +
T Consensus 311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~ 390 (502)
T TIGR00887 311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS 390 (502)
T ss_pred cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67778888886543211 1122223334455678999999999999988887776654 33321 1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc------
Q 019522 123 QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF------ 193 (340)
Q Consensus 123 ~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~------ 193 (340)
+...+...-+...+......+.... +..|. +.|+...++...... ++..+++.+.+.+.+..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~p~~~R~~~~g~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~ 461 (502)
T TIGR00887 391 THGFLAIYVLAQFFANFGPNATTFI-VPGEVFPTRYRSTAHGISAASGK--------AGAIIGQFGFLYLAQHGDPTKGY 461 (502)
T ss_pred hhHHHHHHHHHHHHHhcCCCchhhh-hhhccCchhHHHHHHHHHHHHhh--------hHHHHHHHHhhhhhccccccccc
Confidence 1111211111111111112222222 45665 445554443333322 44445555444444422
Q ss_pred --CCCcchhhhhHHHHHHHHHHHHhcccccccCCC
Q 019522 194 --SLGPVAPFDAAACFLAIGMVIILSSWTENYGDP 226 (340)
Q Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (340)
++.....+.+.++..++..+.. ...||+++++
T Consensus 462 ~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~ 495 (502)
T TIGR00887 462 PTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKS 495 (502)
T ss_pred cccccchHHHHHHHHHHHHHHHHh-eEeccCCCCC
Confidence 1222345555555555554444 5668776543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-06 Score=74.74 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=72.5
Q ss_pred HHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccc-hHHHH-HHHHH-HHHHh-hhhc--cchHHHHHHH
Q 019522 58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACV-TYCLT-YILSC-ITKH--SPQYKILMIG 130 (340)
Q Consensus 58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-r~~l~-~~~~~-~~~~~-~~~~--~~~~~~l~~~ 130 (340)
.+.|.+. +++|.++.+.+.......+...++.++.|++.||..+ |+... ..... ..++. .... .++.....+.
T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (379)
T TIGR00881 237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLIC 316 (379)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence 4455544 5689999999998888888888888999999998643 33222 22111 11222 2122 3344555566
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCc
Q 019522 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP 197 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~ 197 (340)
.++.|+......+.... +..|. ++|+...+..+... . +|..+++.+.+.+.++.||++
T Consensus 317 ~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~----~----~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 317 LFALGFLVYGPQMLIGV-IASELAPKKAAGTAAGFVGFFA----Y----LGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HHHHHHHHhhhhHHHHH-HHHHhcCcchhHHHHHHHHHhh----h----hhhhhhhhhHHHHHHhhcccc
Confidence 66677654444333323 44443 55555433333322 2 444455555555555556553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-06 Score=69.99 Aligned_cols=115 Identities=20% Similarity=0.320 Sum_probs=72.9
Q ss_pred HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHHHhhh
Q 019522 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIATSL 140 (340)
Q Consensus 63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~~~~ 140 (340)
+.+++|+|+.+.+.+.+..+..+...+|+.|.++||+|++...+.+..+..+.. ...|+ ++.=.+...+.|+..+.
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSL 368 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHH
Confidence 467899999999999999999999999999999999999988887766666543 33332 12223344555655433
Q ss_pred ----hhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 141 ----LFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 141 ----~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
.+|.... ++.| ++-|...+..+...+ +|.++-+++.+.+
T Consensus 369 lAcslWP~va~-~vpE-~qLGTaygf~qsIqN----Lgla~i~Iiag~i 411 (459)
T KOG4686|consen 369 LACSLWPCVAS-LVPE-EQLGTAYGFIQSIQN----LGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHhhhhhh-hCCH-HHhcchHHHHHHHHh----hhhhHHhhhhhee
Confidence 3455422 4444 444554444444444 4443444444433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-07 Score=60.30 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHH
Q 019522 46 YSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (340)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (340)
.++.....+...|++|...++.|+|+.|+|.+.+...+...+..+++|.++||+++++.......+.
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3344444555679999999999999999999999999999999999999999999999887766543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-06 Score=76.71 Aligned_cols=143 Identities=18% Similarity=0.114 Sum_probs=102.4
Q ss_pred HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccccc--chHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHH
Q 019522 60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG--RKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGI 136 (340)
Q Consensus 60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G--rr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~ 136 (340)
+|.+.++.+.++.+.+.+.+...+...++.+..|+++|+.. ++.+..++.+..+++. .+++.+++..+...-.+.|+
T Consensus 321 l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~ 400 (509)
T KOG2504|consen 321 LPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGF 400 (509)
T ss_pred HHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88899999999999999999999989999999999999998 4455566666667776 77899999999999999999
Q ss_pred Hhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 137 ATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 137 ~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
+.|...... +..+.|. ++-..+.++... ..+++.+++|++++++.+..+ .+...|...+...++..
T Consensus 401 ~~g~~~~l~-~~i~~~~~g~~~l~~a~Gl~l~--------~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~ 469 (509)
T KOG2504|consen 401 CVGSFSSLT-PVILVDLVGLEKLSNAYGLLLL--------FQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSA 469 (509)
T ss_pred HHHHHHHHH-HHHHHHHcChhhcchHHHHHHH--------HhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHH
Confidence 988886554 3244554 222232222222 334777778888777766554 13355555554444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-06 Score=72.35 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=56.9
Q ss_pred HHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh--ccc--hHHHHHHHH
Q 019522 58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK--HSP--QYKILMIGR 131 (340)
Q Consensus 58 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~--~~~--~~~~l~~~r 131 (340)
.+.|.+. +.+|.++.+.+.+.....+.+.++.++.|+++||+|||+.+..+......+. +.. ..+ +........
T Consensus 246 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (366)
T TIGR00886 246 SIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLF 325 (366)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 3445555 4679999999988888888788888899999999999988877766665544 332 232 454444443
Q ss_pred HHHHHHhhhhhh
Q 019522 132 ILGGIATSLLFS 143 (340)
Q Consensus 132 ~l~G~~~~~~~~ 143 (340)
.+.++..+...+
T Consensus 326 ~~~~~~~g~~~~ 337 (366)
T TIGR00886 326 VALFFFSGAGNG 337 (366)
T ss_pred HHHHHHhccccc
Confidence 444444443333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=73.97 Aligned_cols=138 Identities=18% Similarity=0.113 Sum_probs=86.6
Q ss_pred hHHHHH-HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccccc--chHHHHHHHHHHHHHh-hhhccchHHHHHHHHH
Q 019522 57 GPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG--RKRACVTYCLTYILSC-ITKHSPQYKILMIGRI 132 (340)
Q Consensus 57 ~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G--rr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~ 132 (340)
-|.++. +.|++..+.-++|..+.-..+...++..+.|.++||++ |-.....+++..+..+ ...+++++..+.+-++
T Consensus 290 ePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~ 369 (464)
T KOG3764|consen 290 EPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNF 369 (464)
T ss_pred CcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhH
Confidence 466666 45567755558998888888888888899999999999 4333344444445455 5678999999988888
Q ss_pred HHHHHhhhhhhhhhhhh--hccc-cccch-hhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcc
Q 019522 133 LGGIATSLLFSAFESWL--VAEH-NKRGF-EQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~--i~~~-~~r~~-~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~ 198 (340)
..+++.+.......+.+ +.|. +..+. ..+...+... .+..+|..++|.+++.+.+..|++|.
T Consensus 370 ~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad----~a~sla~a~GP~~gg~iv~~iGF~wl 435 (464)
T KOG3764|consen 370 GLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIAD----AAFSLAYAIGPTFGGSLVEAIGFEWL 435 (464)
T ss_pred HHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHH----HHHHHhhhccccccchheeehhHHHH
Confidence 88887777655544422 2222 22211 1111222222 33446666677777777766676653
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-06 Score=77.06 Aligned_cols=119 Identities=16% Similarity=0.062 Sum_probs=82.6
Q ss_pred HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh-c---------cchHHHHHHHHHH
Q 019522 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-H---------SPQYKILMIGRIL 133 (340)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~-~---------~~~~~~l~~~r~l 133 (340)
+++|.++.++|.+.....++..++....+++.+|++.|+++..+.++.+++. ... . .++.+.+....++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 5789999999999888888888888899999999999999999999988865 321 1 1344455556778
Q ss_pred HHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 019522 134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 188 (340)
.+++.+..+..... ++.+. +.++...+...+..+ +|..++..+++.+.+.
T Consensus 361 ~~~~~g~~~~~~~~-~~~~~~p~~~egt~~al~~s~~~----lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 361 AEVLAQLKFMPFLV-LLARLCPSGCESSVFALLASILH----LGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHHHccHHH-HHHHhCCCCceehHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 88887777666644 55554 555665555555544 4444444444444443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-05 Score=65.69 Aligned_cols=96 Identities=25% Similarity=0.371 Sum_probs=74.1
Q ss_pred hHHHHHHHHhhCCCh--hhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccch--HHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGK--GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ--YKILMIGR 131 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~--~~~l~~~r 131 (340)
.+..+.+.++++.+. .+.+...+...+...+..++.|.++||+|||+.+..+......+. ...+.++ ...+.+.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (338)
T COG0477 22 SPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILR 101 (338)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455777777777666 477888888887777777899999999999988888876644444 4555544 88999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccc
Q 019522 132 ILGGIATSLLFSAFESWLVAEH 153 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~ 153 (340)
+.+|++.+...+...+ ++.|.
T Consensus 102 ~~~g~~~~~~~~~~~~-~~~~~ 122 (338)
T COG0477 102 LLQGLGGGGLLPVASA-LLSEW 122 (338)
T ss_pred HHHHhhhHHHHHHHHH-HHHHh
Confidence 9999999888777766 77776
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-06 Score=75.63 Aligned_cols=140 Identities=18% Similarity=0.135 Sum_probs=108.2
Q ss_pred HHHHHHhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHH
Q 019522 48 LMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKI 126 (340)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~ 126 (340)
.+.+..++...++-.-.||.+-.+.-.|........+-.+.-++.+++.+|+|+-+++..++....+=. ..+..+|.|.
T Consensus 382 ~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~ 461 (618)
T KOG3762|consen 382 VMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWM 461 (618)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchh
Confidence 333444444566666778888777777766555555555566678999999999999999999998877 7788999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 019522 127 LMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (340)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 188 (340)
.+...+++|+..+..+..+.+ |+++..+++...+........-..+|-++|+++|+.+...
T Consensus 462 vLPieilqgit~aliWaa~~s-Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 462 VLPIEILQGITHALIWAAIIS-YASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred eeeHHHHHHHHHHHHHHHHHH-HHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 999999999999999998877 8888766666666666666666677777888887776654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00077 Score=60.99 Aligned_cols=57 Identities=12% Similarity=-0.075 Sum_probs=40.6
Q ss_pred HHHHHHhhCC-----ChhhhHHHHHHHHhhhhhh-hhhhhhccccccchHHHHHHHHHHHHHh
Q 019522 60 VYYLYSTYGF-----GKGEIGQLFIAGFGSSMLF-GTIVGSLADKQGRKRACVTYCLTYILSC 116 (340)
Q Consensus 60 ~~~~~~~~g~-----s~~~~g~~~~~~~~~~~~~-~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 116 (340)
+-.+.+++.. +.+++.++.+...+...+. .++.+++++|++|++++-.....+....
T Consensus 26 LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f 88 (472)
T TIGR00769 26 LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFF 88 (472)
T ss_pred HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHH
Confidence 3445666655 3356778877776655555 6789999999999999888777665544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00016 Score=63.00 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHhhhhHHH-HHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccc-cccchHHHHHHHHHHHHHh-
Q 019522 40 NNYLLVYSLMMAGDWLQGPYV-YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD-KQGRKRACVTYCLTYILSC- 116 (340)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D-r~Grr~~l~~~~~~~~~~~- 116 (340)
++++...++......++.+.+ |+=-+-+|++..|...+......+..++-...|++.. |.++|+.-..++....++.
T Consensus 211 ~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 211 RRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred hHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 455555666666666665553 3334679999999987777666655444446777555 7888888888888887765
Q ss_pred h---hhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 019522 117 I---TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV 190 (340)
Q Consensus 117 ~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~ 190 (340)
+ .+..++.+.+...-++.|++.|.......+ .+-+. ++.|.+.+ .++..+.++.++|..+++.+-+...
T Consensus 291 lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals-~mM~lt~~~~aG~~mG----~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 291 LIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALS-LMMDLTSAGRAGLFMG----AWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHH-HHHhCCCCcchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 345678889999999999999998776655 33333 44555444 4444555555555566555444322
Q ss_pred cc----cCCCcchhhhhHHHHHHHHHHHH
Q 019522 191 DS----FSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 191 ~~----~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
.. ....+...|.+-+...+++.++.
T Consensus 366 ~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 366 ALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 21 12233355666666666555555
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-06 Score=55.92 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=66.1
Q ss_pred HhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHH
Q 019522 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKIL 127 (340)
Q Consensus 53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l 127 (340)
.....|.+|.+.+|.++|.++.|++.+.++++..++++...++.++..+++.+..+.+...+.+ .+++.++++.+
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3445799999999999999999999999999999999999999999888899999999988888 78888777654
|
Note that many members are hypothetical proteins. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00011 Score=63.61 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=88.5
Q ss_pred hHHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHH
Q 019522 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG 134 (340)
Q Consensus 57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~ 134 (340)
..+++.+.+| .|.++.+.+...+....+.+++....-++..|+...|.+....+...+-+ ..++.++...+. .-++.
T Consensus 256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~i 334 (422)
T COG0738 256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLI 334 (422)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHH
Confidence 5667777777 78888888888888888777777778888889999999998887777766 667777755444 45788
Q ss_pred HHHhhhhhhhhhhhhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCC
Q 019522 135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL 195 (340)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~ 195 (340)
|+..+..+|+..+ ...+. .+.... .+ +...-..+|+.+-|.+.+++.|+.+-
T Consensus 335 g~F~simfPTIfs-lal~~l~~~ts~-------~s-~~l~maivGGAiiP~l~G~i~d~~g~ 387 (422)
T COG0738 335 GLFNSIMFPTIFS-LALKNLGEHTSV-------GS-GLLVMAIVGGAIIPPLQGVIADMFGI 387 (422)
T ss_pred HHHhHHHHHHHHH-HHHhccCccccc-------cc-eeeeeheecchHHHHHHHHHHHhhhh
Confidence 9999999998866 43332 222221 11 11112225666777777777666553
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00014 Score=64.91 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=62.7
Q ss_pred HHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccccccc
Q 019522 78 FIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRG 157 (340)
Q Consensus 78 ~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~ 157 (340)
....+..-.+.+.+.+.+.|+.|.|..+.++...+..-.+..+-+|-+.++....+.|+|.+..+..-.. +++|+..|.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~-ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGG-YLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccce-ehhhcCChh
Confidence 4444555556777899999999999999999998877655556677788889999999999998887766 888874443
Q ss_pred h
Q 019522 158 F 158 (340)
Q Consensus 158 ~ 158 (340)
.
T Consensus 135 t 135 (461)
T KOG3098|consen 135 T 135 (461)
T ss_pred h
Confidence 3
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0079 Score=53.92 Aligned_cols=74 Identities=19% Similarity=0.033 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhC-CChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHH
Q 019522 39 KNNYLLVYSLMMAGDWLQGPYVYYLYSTYG-FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (340)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (340)
.+.+....++....+-+..-..|.+..+.. -+---.+.......+...++++..|...||..|+++...+.+.-
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q 78 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ 78 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence 344444555555555544322444444442 12222333333444557788999999999999999887775544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0003 Score=53.49 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=59.0
Q ss_pred HHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 019522 79 IAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH 153 (340)
Q Consensus 79 ~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~ 153 (340)
+..+....+.+++.+.+.+++|.|+.++++.+.+.+-...-+-++.+.++.+-.+.|++.+..+..... ++.+.
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~-ylt~~ 117 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGT-YLTSY 117 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhH-HHHHc
Confidence 334444555666678889999999999999999987555556778889999999999999999988755 77665
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0007 Score=61.45 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=81.7
Q ss_pred hHHHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccch--------HHH-HHHHHHHHHHh-hhhccch-H
Q 019522 57 GPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK--------RAC-VTYCLTYILSC-ITKHSPQ-Y 124 (340)
Q Consensus 57 ~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr--------~~l-~~~~~~~~~~~-~~~~~~~-~ 124 (340)
..+.|.+.+ -+|.+..+.|++.++.++...+...+.|.++||.-+| |.+ .++....++.. ..++.++ .
T Consensus 278 ~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~ 357 (466)
T KOG2532|consen 278 LTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEH 357 (466)
T ss_pred HHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCc
Confidence 455777776 4899999999999999999999999999999988552 222 23333334444 4455442 1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcccc-ccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc-CCCcchhhh
Q 019522 125 KILMIGRILGGIATSLLFSAFESWLVAEHN-KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SLGPVAPFD 202 (340)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~-~~~~~~~~~ 202 (340)
....+.-+..+.+..+..... - +....+ .+.+ .....+.....+ .+...++|.+.+.+.+.. --.|+..|+
T Consensus 358 ~~~a~~~l~~~~~~~g~~~~G-f-~~~~~~~apq~----a~~l~g~~~~~~-~~~~~~~P~~vg~~~~~~t~~eW~~VF~ 430 (466)
T KOG2532|consen 358 RLLAVILLTIAIGLSGFNISG-F-YKNHQDIAPQH----AGFVMGIINFVG-ALAGFIAPLLVGIIVTDNTREEWRIVFL 430 (466)
T ss_pred chHHHHHHHHHHHHcccchhh-h-HhhhhhccchH----HHHHHHHHHHHH-HHHHHHHHHheeeEeCCCCHHHHHHHHH
Confidence 212111122222222211111 0 111111 1112 222222222222 366677777777766421 124667788
Q ss_pred hHHHHHHHHHHHH
Q 019522 203 AAACFLAIGMVII 215 (340)
Q Consensus 203 ~~~~~~~~~~~~~ 215 (340)
+.+++.++..++.
T Consensus 431 i~a~i~~~~~i~f 443 (466)
T KOG2532|consen 431 IAAGILIVGNIIF 443 (466)
T ss_pred HHHHHHHHhchhe
Confidence 8877777666544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00086 Score=61.56 Aligned_cols=87 Identities=7% Similarity=-0.140 Sum_probs=58.9
Q ss_pred hHHHHHHHHhhhhhhhhhhh----hcccc-ccchHHH--HHHHHHHHHHh-hhhc---------cchHHHHHHHHHHHHH
Q 019522 74 IGQLFIAGFGSSMLFGTIVG----SLADK-QGRKRAC--VTYCLTYILSC-ITKH---------SPQYKILMIGRILGGI 136 (340)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~G----~l~Dr-~Grr~~l--~~~~~~~~~~~-~~~~---------~~~~~~l~~~r~l~G~ 136 (340)
.+++.+...+.-.+.+++.. ++.|| .+.+... .++.++.+++. ..++ ..|+++++...++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 45666666666666666544 45555 3334444 67777777776 4432 4688999999999999
Q ss_pred Hhhhhhhhhhhhhhccc---cccchhhH
Q 019522 137 ATSLLFSAFESWLVAEH---NKRGFEQQ 161 (340)
Q Consensus 137 ~~~~~~~~~~~~~i~~~---~~r~~~~~ 161 (340)
|+....|...+ ++.+. +.||+..+
T Consensus 394 ge~~~~p~~~~-~~~~~aP~~~~g~~~g 420 (475)
T TIGR00924 394 GELMISPLGLS-WWTKIAPQRLMGQMLG 420 (475)
T ss_pred HHHHHhHHHHH-HHHHhCCHHHHHHHHH
Confidence 99999999877 66655 45566333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00043 Score=63.94 Aligned_cols=83 Identities=13% Similarity=0.007 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhhhhhhh----hhhccccccchHHHHHHHHHHHHHh-hhhccch---------HHHHHHHHHHHHHHhhh
Q 019522 75 GQLFIAGFGSSMLFGTI----VGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ---------YKILMIGRILGGIATSL 140 (340)
Q Consensus 75 g~~~~~~~~~~~~~~~~----~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~---------~~~l~~~r~l~G~~~~~ 140 (340)
++..+...+...+.+++ .+++.||++.++.+.++.++.+++. ..+..++ .++++...++.|+|+..
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 34444444434444444 4778888888889999999999987 5444433 45788899999999999
Q ss_pred hhhhhhhhhhccc---cccch
Q 019522 141 LFSAFESWLVAEH---NKRGF 158 (340)
Q Consensus 141 ~~~~~~~~~i~~~---~~r~~ 158 (340)
..|...+ ++.+. +.||+
T Consensus 399 ~~p~g~s-~~~~~aP~~~rg~ 418 (500)
T PRK09584 399 ISGLGLA-MVAQLVPQRLMGF 418 (500)
T ss_pred HhHHHHH-HHHHhCcHHHHHH
Confidence 9998877 65554 55555
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.004 Score=56.74 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=76.9
Q ss_pred hhhhhhhhhhccccccc-hHHHHHHHHHHHHHh-hhhccch---------------------HHHHHHHHHHHHHHhhhh
Q 019522 85 SMLFGTIVGSLADKQGR-KRACVTYCLTYILSC-ITKHSPQ---------------------YKILMIGRILGGIATSLL 141 (340)
Q Consensus 85 ~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~-~~~~~~~---------------------~~~l~~~r~l~G~~~~~~ 141 (340)
..+.+.+.-++.+|+|+ |++...+.++.+++. ...+.++ .+..++...+.|+..+..
T Consensus 318 ~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~ 397 (477)
T TIGR01301 318 LGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT 397 (477)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH
Confidence 33555567778999985 777788888887766 3333221 256677778899998888
Q ss_pred hhhhhhhhhccc-c----ccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHh
Q 019522 142 FSAFESWLVAEH-N----KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (340)
Q Consensus 142 ~~~~~~~~i~~~-~----~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
+....+ ++++. + +.|...+..+.+.. +...+..+..+.+... .+-+....+.+.++..+++.+...
T Consensus 398 ~siPfa-l~s~~~~~~~~~~G~~mgilN~~I~----lpQii~sl~~g~~~~~----~g~~~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 398 YSIPFA-LASIRSSNLGAGQGLSMGVLNLAIV----IPQIIVSLGSGPWDQL----FGGGNLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred HHHhHH-HHHHHccccCCCCcchhhHHHHHHH----HHHHHHHHHHHHHHHH----cCCCCeeHHHHHHHHHHHHHHHHH
Confidence 877656 66654 2 22454444444444 3333333333332222 222334567777777777777765
Q ss_pred cccccc
Q 019522 217 SSWTEN 222 (340)
Q Consensus 217 ~~~~~~ 222 (340)
..+|+.
T Consensus 469 ~~~~~~ 474 (477)
T TIGR01301 469 ILLPRP 474 (477)
T ss_pred HhCCCC
Confidence 555543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00031 Score=63.98 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=47.1
Q ss_pred hHHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhcccc----ccchHHHHHHHHHHHH
Q 019522 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRACVTYCLTYIL 114 (340)
Q Consensus 57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr----~Grr~~l~~~~~~~~~ 114 (340)
..++|.+.++ .|.|..+.+.+.....+++.++.+.+|.++|| ..+|........+..+
T Consensus 293 ~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~ 355 (495)
T KOG2533|consen 293 SYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI 355 (495)
T ss_pred HHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3457888887 56899999999999999999999999999999 6677776666666655
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=60.85 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=65.0
Q ss_pred hhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc--cchHH--HHHHHHHHHHHHhhhhhhhhhhhhhccc---c
Q 019522 83 GSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH--SPQYK--ILMIGRILGGIATSLLFSAFESWLVAEH---N 154 (340)
Q Consensus 83 ~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~--~~~~~--~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~ 154 (340)
+..+.+.++.+++.||+|||+.+..+.+++++.. +... .+|.. +++.+|+....+ +.+... |..|. +
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~----fqvaYv-YtPEVyPTa 466 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGA----FQVAYV-YTPEVYPTA 466 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhch----heEEEE-ecCcccchh
Confidence 4466677789999999999999999999999866 4333 33332 445556554433 333322 55554 4
Q ss_pred ccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 155 KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 155 ~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
.|+...+.-++..- +|+++.|.++-. .+ -+-..+..+...+++++.+..
T Consensus 467 vRatgvGtcSsmaR--------IggI~~p~iA~~-~e---~s~sl~i~vy~~~~ilagIav 515 (528)
T KOG0253|consen 467 VRATGVGTCSSMAR--------IGGIFSPVIAMR-AE---LSTSLPIFVYGALFILAGIAV 515 (528)
T ss_pred hhhcchhhhhhHHh--------hhhhhhhHHHHH-hc---cceeehHHHHHHHHHHHHHHh
Confidence 44443333322222 666777766622 11 122244445455555554444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0031 Score=58.07 Aligned_cols=103 Identities=8% Similarity=-0.032 Sum_probs=65.6
Q ss_pred HHHHHHHhhhhhhhhhhhhccccccchH-------HHHHHHHHHHHHh-hh-----hc-----cchHHHHHHHHHHHHHH
Q 019522 76 QLFIAGFGSSMLFGTIVGSLADKQGRKR-------ACVTYCLTYILSC-IT-----KH-----SPQYKILMIGRILGGIA 137 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~G~l~Dr~Grr~-------~l~~~~~~~~~~~-~~-----~~-----~~~~~~l~~~r~l~G~~ 137 (340)
.+.+...+...+.+|+.|++.||.++|+ -+..+.++.+++. .. .+ ..+.+++....++.|+|
T Consensus 313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~G 392 (489)
T PRK10207 313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG 392 (489)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence 3444444556678888899999999987 3666766666554 21 11 13567788889999999
Q ss_pred hhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHH
Q 019522 138 TSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG 183 (340)
Q Consensus 138 ~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (340)
.+...+...+ ++.+. +.++. .++.+.....+|+.+|..++.
T Consensus 393 e~~~~~~g~~-~~~~~aP~~~~g~----~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 393 ELFISALGLA-MIAALVPQHLMGF----ILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHhHHHHH-HHHHhChHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 9999988766 54443 33344 444444444455555555544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0098 Score=55.28 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=39.9
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC 116 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 116 (340)
..+.+.+.++.|.+... ........+...++..+...+.||+|||+.++.+...+.++.
T Consensus 315 ~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~ 373 (513)
T KOG0254|consen 315 FYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICL 373 (513)
T ss_pred EeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHH
Confidence 35577888888877543 222222222233444456899999999999999999888866
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.047 Score=48.34 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=73.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 019522 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH 153 (340)
Q Consensus 75 g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~ 153 (340)
+.+..+..+.+.+....+-++.+|...+.=......+..++. +.+++++.+.=+++-.+.+++.|.......+ +.+..
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLS-LTHFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHH-HHHhc
Confidence 445555555566666667778888876555556666777777 7788899988888888999988887776655 55444
Q ss_pred cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 154 NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 154 ~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
+++.. ..++. |.+.++++|...-..+.+ .++..+..+.....+
T Consensus 141 ~~~~l------~~wss----GTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~l 183 (402)
T PF02487_consen 141 GKSSL------SAWSS----GTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVL 183 (402)
T ss_pred Ccccc------ccccC----CcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHH
Confidence 43321 33332 333444444443333333 556555555554433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.019 Score=49.71 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=62.1
Q ss_pred HHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccc-----cccchHHHH------HHHHHHHHHh-h---h---hc
Q 019522 59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD-----KQGRKRACV------TYCLTYILSC-I---T---KH 120 (340)
Q Consensus 59 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~D-----r~Grr~~l~------~~~~~~~~~~-~---~---~~ 120 (340)
.+|.+.+.-|.|.++.+....+.+ -.-.-+.+.++.| |+||||..+ ++..+..++. . . +-
T Consensus 52 ~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~ 129 (510)
T KOG3574|consen 52 AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGG 129 (510)
T ss_pred hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCC
Confidence 588888888888888876543332 1123345888888 999998653 3333333332 1 1 11
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhhhhcc--ccccchhhHHHHHHHHHHHHhhhhHHH
Q 019522 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAE--HNKRGFEQQWLSITFSKAIFLGNGLVA 179 (340)
Q Consensus 121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~--~~~r~~~~~~~~~~~~~~~~~g~~ig~ 179 (340)
.|+...+....++.-+..+..-.+...|-+.- .++-|. .+..++.+...|+.+|.
T Consensus 130 ~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgy----aST~q~Vg~~~GyfL~~ 186 (510)
T KOG3574|consen 130 LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGY----ASTCQSVGQTAGYFLGN 186 (510)
T ss_pred CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCc----hhHHHHHHHhhhHHhhc
Confidence 23444444444555555555544444433332 244445 44555555555554443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.13 Score=43.84 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=65.6
Q ss_pred hhhhhhccccccchHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-----ccc-------
Q 019522 89 GTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-----NKR------- 156 (340)
Q Consensus 89 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-----~~r------- 156 (340)
..+.+.+.+++|-|.++.++...+......=+-|.+..++..-...|++.+..+..-.+ ++++. +.|
T Consensus 75 ~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~Skgt-YlT~~g~~ya~~~~~q~~~~ 153 (390)
T KOG3097|consen 75 SMFMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGT-YLTPMGQNYANQRGEQAGDG 153 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcc-eecHHHHHHHHhhhhhccCc
Confidence 33455889999999999999888776654456678889999999999999998876655 66553 333
Q ss_pred --chhhHHHHHHHHHHHHhhhhHHHHH
Q 019522 157 --GFEQQWLSITFSKAIFLGNGLVAIL 181 (340)
Q Consensus 157 --~~~~~~~~~~~~~~~~~g~~ig~~~ 181 (340)
.+..+.....+......|+.+...+
T Consensus 154 ~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 154 MKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred eeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666555544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0044 Score=56.73 Aligned_cols=75 Identities=8% Similarity=0.009 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchhh---HHHHHHHHHHHHHHHHHHHHHhhC-CCCchhHHHHHHHH
Q 019522 247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARS-PPRVESYMQIVFVV 322 (340)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~ 322 (340)
|+-+.......+.....++....++|.|+++..|.+.. .....+.....++.+++|+++||+ |||+ .+..+..+
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr--~iliG~il 85 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM--AVMLGALL 85 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH--HHHHHHHH
Confidence 33333334344444445554688899998877777664 445556677788899999999999 9985 44444333
Q ss_pred H
Q 019522 323 S 323 (340)
Q Consensus 323 ~ 323 (340)
.
T Consensus 86 ~ 86 (493)
T PRK15462 86 M 86 (493)
T ss_pred H
Confidence 3
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.018 Score=51.18 Aligned_cols=157 Identities=15% Similarity=0.035 Sum_probs=83.9
Q ss_pred HHHHHHhhCCChhhhHH--------HHHHH-HhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccch----HH
Q 019522 60 VYYLYSTYGFGKGEIGQ--------LFIAG-FGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ----YK 125 (340)
Q Consensus 60 ~~~~~~~~g~s~~~~g~--------~~~~~-~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~----~~ 125 (340)
...+.++.|+.+.+... ..... ......+-.+...++|+.|||+..+.+.+++++.. ..+...| -.
T Consensus 327 ~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~ 406 (538)
T KOG0252|consen 327 QSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTI 406 (538)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccC
Confidence 55666767765544332 11111 12222344467789999999999999999998865 5555443 11
Q ss_pred HHHH----HHHHHHHHhhhhhhhhhh-hhhccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc---CCCc
Q 019522 126 ILMI----GRILGGIATSLLFSAFES-WLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF---SLGP 197 (340)
Q Consensus 126 ~l~~----~r~l~G~~~~~~~~~~~~-~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~---~~~~ 197 (340)
.+++ ..++..+| |.... ++-+|. .+.+..+...++....|- +|++++...-.++.++. .-+.
T Consensus 407 Gf~v~y~l~~ff~NFG-----Pn~ttfivpaE~----FParvR~t~hGIsAA~GK-~GAivg~~~F~~~t~~~yp~~~g~ 476 (538)
T KOG0252|consen 407 GFVVLYSLTFFFGNFG-----PNATTFIVPAEI----FPARVRSTCHGISAASGK-AGAIVGAFGFLYLTDHNYPPNIGV 476 (538)
T ss_pred ceeehHHHHHHHHhcC-----CCceeEEeehhh----chHHHhhhhhhHHHHhcc-chHHHHHHHhhHhhhccCCccccc
Confidence 2222 23333333 22212 022333 222223334444444444 67777766666655511 1233
Q ss_pred chhhhhHHHHHHHHHHHHhcccccccCCCc
Q 019522 198 VAPFDAAACFLAIGMVIILSSWTENYGDPS 227 (340)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (340)
+..+++.+.+.++..+.. ...||++++..
T Consensus 477 ~~v~~i~~~~~~~gi~~T-~l~pEtk~~~l 505 (538)
T KOG0252|consen 477 RNVFIILAGCMLLGILFT-LLIPETKGKSL 505 (538)
T ss_pred hHHHHHHHHHHHHhHhee-EEeecccccCH
Confidence 466777777777666655 56677766543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0013 Score=59.17 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHH-Hh-hhhc
Q 019522 55 LQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKH 120 (340)
Q Consensus 55 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~-~~-~~~~ 120 (340)
...|+++.+.+++|+++++.|.+...--+..++..|++|.++||+-+||.++++..+..+ .. +..+
T Consensus 29 ~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 29 SLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred ccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 336889999999999999999999998888999999999999999888777777666555 33 4444
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.01 Score=39.19 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=37.0
Q ss_pred HHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 263 MYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
..+....+.|.|.++ .|.++ +.+.++..+..+++.++.|+++||.++++
T Consensus 15 ~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 333346777888875 45655 45666677889999999999999999986
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.11 Score=48.71 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=46.5
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccccccchH-HHHHHHHHHHHHh-hhh-c-cchHHHHHHHHHHHHHHhhhhhhhh
Q 019522 73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-ACVTYCLTYILSC-ITK-H-SPQYKILMIGRILGGIATSLLFSAF 145 (340)
Q Consensus 73 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~-~l~~~~~~~~~~~-~~~-~-~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (340)
+.++.......+..+++.+.|.+..+.+|-| .++.+..++.+.+ +++ . .+|....+..-++.|++.|......
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~ 426 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPA 426 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHH
Confidence 4556655555556666777888888877644 4456666665544 332 2 3455556677888898888775544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.51 Score=43.38 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh------hHHHHHHHHHHHHHHHHHHHHHhhC
Q 019522 235 QFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH------GFIFATFMLASMLGSSLASRLMARS 308 (340)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~l~dr~ 308 (340)
...+..+.+.|+|-+..++.............-..|-. ..++.+..+. +......++..++..++++.+.+|+
T Consensus 268 s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~-~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~ 346 (491)
T PF03219_consen 268 SLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKS-QLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRF 346 (491)
T ss_pred cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667888887777655544443333222122221 1122211111 2333444566666678889999999
Q ss_pred CCCc
Q 019522 309 PPRV 312 (340)
Q Consensus 309 g~~~ 312 (340)
|.+.
T Consensus 347 GW~~ 350 (491)
T PF03219_consen 347 GWRT 350 (491)
T ss_pred hHHH
Confidence 9874
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.59 E-value=6e-05 Score=68.67 Aligned_cols=156 Identities=15% Similarity=0.037 Sum_probs=77.1
Q ss_pred HHHHHHHhhCCChh-hhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhh----ccchH-----HHH
Q 019522 59 YVYYLYSTYGFGKG-EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK----HSPQY-----KIL 127 (340)
Q Consensus 59 ~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~----~~~~~-----~~l 127 (340)
+.|.+.++.+.++. ....+ ..+...++.+....+.||+|||+.+..+....++.. ..+ ..++. ...
T Consensus 275 ~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T PF00083_consen 275 YSPSIFENAGISNSFLATLI---LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS 351 (451)
T ss_pred cccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35667777777766 12222 122233444456789999999999999988887765 332 11111 111
Q ss_pred HHHHHHHHHHhhhh-hhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhh
Q 019522 128 MIGRILGGIATSLL-FSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA 203 (340)
Q Consensus 128 ~~~r~l~G~~~~~~-~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~ 203 (340)
++.-.+.....+.. .+.... +..|. +.|....+.. ...+. ++..+.+.+...+.+..+ . ...+.+
T Consensus 352 i~~~~l~~~~~~~g~~~~~~~-~~~ElfPt~~R~~~~~~~-------~~~~~-i~~~i~~~~~~~~~~~~~-~-~~~~~i 420 (451)
T PF00083_consen 352 IVFLALFFAFFSLGWGPLPWI-YTAELFPTKVRSTGIGLS-------YAVGR-IGGFIIPFLFPYLFNNLG-G-WGVFLI 420 (451)
T ss_pred ceeeeeccccccccccccccc-cccccccccccccccccc-------ccccc-cccccccccccccccccc-c-cccchh
Confidence 11112221222211 122212 56775 4444422222 22222 444444444444443333 1 133445
Q ss_pred HHHHHHHHHHHHhcccccccCCCcc
Q 019522 204 AACFLAIGMVIILSSWTENYGDPSE 228 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (340)
.+.+..+..+......||++++.-+
T Consensus 421 ~~~~~~i~~i~~~~~lpET~g~~l~ 445 (451)
T PF00083_consen 421 FAGVCLIAIIFVYFFLPETKGKTLE 445 (451)
T ss_pred hHHHHHHHHhheeEEEeeCCCCCHH
Confidence 4555555555555778888876543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.17 Score=46.07 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=76.7
Q ss_pred HHHhhCCChhhhHHHHHHHHhhhhhhhhhh-hhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhh
Q 019522 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIV-GSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSL 140 (340)
Q Consensus 63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~-G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~ 140 (340)
+...+++++.+.+...+.....+.+...+. +.+...+|-|+++..|+..-.+.. ..+++++.|+.+....+.++....
T Consensus 268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~ 347 (463)
T KOG2816|consen 268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIV 347 (463)
T ss_pred EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcch
Confidence 345789999999977777777677777754 478888999998889988888887 889999999988888877775333
Q ss_pred hhhhhhhhhhc---cccccchhhHHHHHHHH
Q 019522 141 LFSAFESWLVA---EHNKRGFEQQWLSITFS 168 (340)
Q Consensus 141 ~~~~~~~~~i~---~~~~r~~~~~~~~~~~~ 168 (340)
.|...+ +++ +.+++|+..++......
T Consensus 348 -~pa~~s-~~s~~v~~~e~g~v~~~is~i~~ 376 (463)
T KOG2816|consen 348 -FPAIRA-FASILVSPEEQGKVFGIISGIEG 376 (463)
T ss_pred -hHHHHh-HHHhhcccccccchhhHHHHHHH
Confidence 355544 433 44778886555555444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.032 Score=49.52 Aligned_cols=106 Identities=13% Similarity=0.229 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHh-hh---hccch------HHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cc--cchhhHHHHHHHHH
Q 019522 103 RACVTYCLTYILSC-IT---KHSPQ------YKILMIGRILGGIATSLLFSAFESWLVAEH-NK--RGFEQQWLSITFSK 169 (340)
Q Consensus 103 ~~l~~~~~~~~~~~-~~---~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~--r~~~~~~~~~~~~~ 169 (340)
|++..+.+++.+|. +. +.-++ ...++++..+.++|.|..-|...+ +.+|. ++ +.+. ...++.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~-~~~dq~~~~~~~~~----~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISP-FGADQYDEDDDSRR----DSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHH-HHHHCSSTTTTTHH----HHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHH-HHHHHhcccchhhh----hhhHHH
Confidence 56677777777776 42 22222 257888899999999999998877 87775 22 2232 222322
Q ss_pred HHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHh
Q 019522 170 AIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (340)
Q Consensus 170 ~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
.+. +..+|..++.....++.++.+|. ..|.+..+..+++.....
T Consensus 77 fY~-~in~G~~~~~~~~~~i~~~~~~~--~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 77 FYW-GINIGSLFSPTLVPYIQQNYGWF--LGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHH-HHHHHHHHHHHCCCHHHHCS-HH--HHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhhhhHhhcccchhhccccchh--hhhhHHHHHHHHHHHHHH
Confidence 222 33377777777777777665554 668777776666665554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.18 Score=43.43 Aligned_cols=253 Identities=15% Similarity=0.079 Sum_probs=117.3
Q ss_pred hHH-HHHHH-HhhCCChhhhH-HHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHH
Q 019522 57 GPY-VYYLY-STYGFGKGEIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI 132 (340)
Q Consensus 57 ~~~-~~~~~-~~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~ 132 (340)
.|+ .|++. .+.+++..|+. -++-...-...+.-.+.=.+.|..-.|++++.-.+...... +.-+.++.+.+-+.-+
T Consensus 24 eP~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~ 103 (433)
T KOG3810|consen 24 EPYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEF 103 (433)
T ss_pred CCccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehh
Confidence 466 44444 36677777664 11111111111111123347898888888776655555444 5667888888888888
Q ss_pred HHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHH
Q 019522 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 209 (340)
..|...+... +..+ ++-+. +++.+..+.-.+ ....|...|..++..+.+ ...+.....-.+......
T Consensus 104 FyG~~tAaEI-AYys-YIYs~Vd~~~Yqrvt~y~Ra----A~L~g~~~g~vlaQlLvs----~~~~sy~~LN~ISL~~~~ 173 (433)
T KOG3810|consen 104 FYGPATAAEI-AYYS-YIYSKVDPEMYKRVTGYCRA----AFLVGKFVGSVLAQLLVS----LETLSYTTLNYISLAEVT 173 (433)
T ss_pred hcChHHHHHH-hhhh-eeeeecCHHHHHHHHHHhHH----HHHHHhHHHhHHHHHHhh----hcccchhhhchhhHHHHH
Confidence 8888766652 2223 44333 222232222222 233334344444444333 233333222222222222
Q ss_pred HHHHHH--hcccccc----cCCCc----------cchHHH-------HHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHH
Q 019522 210 IGMVII--LSSWTEN----YGDPS----------ESKDLL-------TQFRGAAVAIASDEKIALLGAIQSLFEGSMYTF 266 (340)
Q Consensus 210 ~~~~~~--~~~~~~~----~~~~~----------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (340)
+...+. .|+.+++ +.+++ .+.+.. ....++.....+||+++.-.+-..+...+.+.
T Consensus 174 ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~Q- 252 (433)
T KOG3810|consen 174 IAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQ- 252 (433)
T ss_pred HHHHHHhhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHH-
Confidence 222222 1222211 00000 000011 11122334455677777665555554444444
Q ss_pred HHhhccccccCCCCchh----hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 019522 267 VFLWTPALSPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVF 320 (340)
Q Consensus 267 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 320 (340)
+.++....-++....+. |..=++..+.++++.+..|.+.-+..|.....+.++.
T Consensus 253 V~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s 310 (433)
T KOG3810|consen 253 VTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGS 310 (433)
T ss_pred HHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHH
Confidence 45555544333321111 3334556677788888888887666665423333443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.16 Score=45.28 Aligned_cols=89 Identities=17% Similarity=0.052 Sum_probs=57.5
Q ss_pred HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccc-hHHHHHHHHHHHHHh--hhhc---cchHHHHHHHHHHHHHH
Q 019522 64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACVTYCLTYILSC--ITKH---SPQYKILMIGRILGGIA 137 (340)
Q Consensus 64 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~--~~~~---~~~~~~l~~~r~l~G~~ 137 (340)
...-|.+....|.......+.+++++...|.+.||... |.+.........++. +.-. ..+.+.++..-.+.|.+
T Consensus 293 l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~ 372 (480)
T KOG2563|consen 293 LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFF 372 (480)
T ss_pred cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHh
Confidence 34456666778999888999999999999999999865 444444444444442 1111 22334555566777777
Q ss_pred hhhhhhhhhhhhhccc
Q 019522 138 TSLLFSAFESWLVAEH 153 (340)
Q Consensus 138 ~~~~~~~~~~~~i~~~ 153 (340)
.....|...- +-.|.
T Consensus 373 ~~~~~Pig~E-lgvE~ 387 (480)
T KOG2563|consen 373 GTGYLPIGFE-LGVET 387 (480)
T ss_pred hcCCCCccee-eeeee
Confidence 7777776544 44443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.59 Score=43.88 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=90.8
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc-cchHHHHHHHHHHHHHh-hhhc-------cc-----
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKH-------SP----- 122 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~-~~~~-------~~----- 122 (340)
.+.+.++.++++.+...+.-..........+.....+.++|-| ||-+++.++.++..++. +..+ .+
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 4667778888888887666665555555556667889999976 88899998888876653 2111 11
Q ss_pred ----------h---HHHHHHHHHHHHHHhhhhhhhhhhhhhccc-c---ccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 123 ----------Q---YKILMIGRILGGIATSLLFSAFESWLVAEH-N---KRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 123 ----------~---~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
+ ...+....-+..+|.|+.-+...+ +-+|. + ++... .....++..+ .....|..++..+
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~-fGadQfd~~~~~~~~--~~~~fFnW~y-f~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLA-FGADQFDELDPVEVK--GIPSFFNWFY-FSQNGGALLAQTV 213 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchh-hcccccCccCcchhh--CcccchhHHH-HHHHHHHHHHHHH
Confidence 1 125566667777788888777655 65554 2 11110 0112222122 2333666666666
Q ss_pred hhhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 186 GNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 186 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
..+..+..+|. +-|.+......++.++.
T Consensus 214 ~vyiq~~~~w~--lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 214 LVYIQDNVGWK--LGFGIPTVLNALAILIF 241 (571)
T ss_pred HHhhhhcccce--eeccHHHHHHHHHHHHH
Confidence 66666666666 44666655554444443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.2 Score=41.63 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=27.0
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHh-hhhccc
Q 019522 90 TIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP 122 (340)
Q Consensus 90 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~ 122 (340)
...+...|++|||.....+..+..+++ ..++.+
T Consensus 368 ~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~ 401 (521)
T KOG0255|consen 368 FRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLP 401 (521)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 345789999999999999999999988 555544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.43 Score=41.79 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=80.8
Q ss_pred HhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccccc--chHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhh
Q 019522 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG--RKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL 141 (340)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~G--rr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~ 141 (340)
+.+|.++.|.|-+++...+.+.+.+....+..||.. -+-.+..++.+..-.. +.+.++....+..+..+-.+..+..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~ 369 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV 369 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence 678999999998877777777788777888888887 6666666666655555 6677788788888888888877776
Q ss_pred hhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 019522 142 FSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (340)
Q Consensus 142 ~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 188 (340)
.+.... ++... ++||...++..+... ++-.+|+++++....|
T Consensus 370 vt~Lt~-Lv~~~~~~~qrG~~~Gi~~Sl~a----laRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 370 VTCLTS-LVHKYGPQSQRGTLNGIFRSLGA----LARAIGPLVSGVIFSW 414 (451)
T ss_pred hHHHHH-HHHhcCCcccchHHHHHHHHHHH----HHHHhhhhhhheeEEE
Confidence 555544 55544 666665444444333 3444555555544443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.15 Score=47.82 Aligned_cols=92 Identities=9% Similarity=0.070 Sum_probs=53.7
Q ss_pred HHHHHHhh-CC-ChhhhHH-HHHHHHhhhhhhhhhhhhcc---cccc-----chHH-HHHHHHHHHHHh-hhhccchHHH
Q 019522 60 VYYLYSTY-GF-GKGEIGQ-LFIAGFGSSMLFGTIVGSLA---DKQG-----RKRA-CVTYCLTYILSC-ITKHSPQYKI 126 (340)
Q Consensus 60 ~~~~~~~~-g~-s~~~~g~-~~~~~~~~~~~~~~~~G~l~---Dr~G-----rr~~-l~~~~~~~~~~~-~~~~~~~~~~ 126 (340)
+.++.+.+ |. ++.+... +.+...+.+.++.+..|.+. .|.. +|+. +.+..+ +.++. +.++.-....
T Consensus 376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~ 454 (591)
T PTZ00207 376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAA 454 (591)
T ss_pred HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccH
Confidence 56777888 66 2332222 44555555666666666655 1221 1222 233333 44444 4444322268
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccc
Q 019522 127 LMIGRILGGIATSLLFSAFESWLVAEH 153 (340)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~ 153 (340)
+.+.-++.|++.|..++...+ .++|.
T Consensus 455 L~~~~~lvg~~~G~~~~~~~~-i~sel 480 (591)
T PTZ00207 455 LPLPYFIAAFANGFMAATIAL-VTRTI 480 (591)
T ss_pred hHHHHHHHHHHhhHhHHHHHH-HHHHH
Confidence 999999999999999988756 77776
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.34 Score=46.31 Aligned_cols=59 Identities=20% Similarity=0.026 Sum_probs=42.6
Q ss_pred hHHHHHHHH-hhCCChhhhHHHHHHHHh-hhhhhhhhhhhcccccc--chHHHHHHHHHHHHH
Q 019522 57 GPYVYYLYS-TYGFGKGEIGQLFIAGFG-SSMLFGTIVGSLADKQG--RKRACVTYCLTYILS 115 (340)
Q Consensus 57 ~~~~~~~~~-~~g~s~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~G--rr~~l~~~~~~~~~~ 115 (340)
..++|.+.+ ++|+++.+.+.+.....+ +..++.++.|+++||++ .|+.+..+.++..++
T Consensus 350 ~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 350 ITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence 345666665 699999999988877665 45667778999999998 456666665555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.8 Score=38.22 Aligned_cols=80 Identities=16% Similarity=0.039 Sum_probs=47.3
Q ss_pred HHHHHHHhhhhhhhhhhhhccccccch-------HHHHHHHHHHHHHh-hhh-----cc-----chHHHHHHHHHHHHHH
Q 019522 76 QLFIAGFGSSMLFGTIVGSLADKQGRK-------RACVTYCLTYILSC-ITK-----HS-----PQYKILMIGRILGGIA 137 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~G~l~Dr~Grr-------~~l~~~~~~~~~~~-~~~-----~~-----~~~~~l~~~r~l~G~~ 137 (340)
+..+...+.-++.+|+..++-.|.++| .-+..+..+.+.+. +.. .. .+.++++...+++++|
T Consensus 328 ~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~g 407 (498)
T COG3104 328 WFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFG 407 (498)
T ss_pred HHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 444444444445555555544443322 23445555555544 221 11 3577889999999999
Q ss_pred hhhhhhhhhhhhhcccccc
Q 019522 138 TSLLFSAFESWLVAEHNKR 156 (340)
Q Consensus 138 ~~~~~~~~~~~~i~~~~~r 156 (340)
+=+..|+..+ +++...++
T Consensus 408 EL~iSpvGLs-~~t~laP~ 425 (498)
T COG3104 408 ELFISPVGLS-MVTKLAPP 425 (498)
T ss_pred HHHhCHHHHH-HHHHhChH
Confidence 9999998877 66655444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.4 Score=38.38 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=24.4
Q ss_pred CCchhh---HHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 279 EEIPHG---FIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 279 ~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+|.+.. ..+..-...+.+...+.|.+.||+|||+
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~ 100 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK 100 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 455443 4444445667778888999999999996
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=14 Score=34.63 Aligned_cols=36 Identities=6% Similarity=-0.176 Sum_probs=25.4
Q ss_pred HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhcccc
Q 019522 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK 98 (340)
Q Consensus 63 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr 98 (340)
+..-+|-+..+.+.+.+....+..+++.+.|++.++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344567777778888888877777777777766533
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.97 Score=41.08 Aligned_cols=48 Identities=23% Similarity=0.182 Sum_probs=35.3
Q ss_pred CChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh
Q 019522 69 FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC 116 (340)
Q Consensus 69 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 116 (340)
.|+...|.+...+.++..++..+......+..-|+++..+.++.++..
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~ 299 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLAS 299 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 788888888777777666666667666667777888888877776643
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=89.57 E-value=1.8 Score=39.52 Aligned_cols=57 Identities=7% Similarity=-0.091 Sum_probs=39.7
Q ss_pred cccCCCCchh----hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHH
Q 019522 274 LSPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV 332 (340)
Q Consensus 274 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 332 (340)
++.+++|.+. +.+...+..+..+..++.|+++||+|.|+ ++....+...+...+..+
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~--vL~l~~l~Wsl~t~L~~f 111 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP--VLVLQALSFVCVWLLLLL 111 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHHHHHHHH
Confidence 4444556554 46778888999999999999999999994 555555555444444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.37 E-value=4 Score=36.92 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=25.4
Q ss_pred HHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccc
Q 019522 60 VYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ 99 (340)
Q Consensus 60 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~ 99 (340)
.+...+-.|.+..+.-++..+...++.++..++|.++||+
T Consensus 271 ~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 271 IYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred HHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence 5555555554444444555555666667777889999984
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=88.86 E-value=13 Score=33.78 Aligned_cols=111 Identities=17% Similarity=0.058 Sum_probs=68.3
Q ss_pred HHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh----hhhcc---c----hHHHHHH
Q 019522 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHS---P----QYKILMI 129 (340)
Q Consensus 61 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----~~~~~---~----~~~~l~~ 129 (340)
..+.++-|+++.++|..-+.+.+.+..+.....++.+|+|..|.=..+...-.... ...+. + +...++.
T Consensus 282 t~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~ 361 (432)
T PF06963_consen 282 TAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLG 361 (432)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Confidence 34444559999999999999988888888889999999999888777766443322 11122 2 2223333
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHH
Q 019522 130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIF 172 (340)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~ 172 (340)
+-.+.-+|.=...-.... ++-|. ++||...+...+..+..-.
T Consensus 362 gi~~SR~GLW~fDL~~~q-i~Qe~V~~~~Rg~v~gvq~sl~~lf~l 406 (432)
T PF06963_consen 362 GIALSRIGLWSFDLAVTQ-IMQENVPESERGAVSGVQNSLQSLFEL 406 (432)
T ss_pred HHHHHHHHHHhhhHHHHH-hhcccCCHHHhhHHHHHHHHHHHHHHH
Confidence 333333443333223323 45554 7788877766666664444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.64 E-value=17 Score=32.43 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 019522 290 FMLASMLGSSLASRLMARS 308 (340)
Q Consensus 290 ~~~~~~~~~~~~g~l~dr~ 308 (340)
+++...+|.....++.++-
T Consensus 292 fN~~d~vG~~~a~~~~~~~ 310 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWPD 310 (406)
T ss_pred hHHHHHhhhhhhhcccCCC
Confidence 6788888877777776654
|
|
| >PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region | Back alignment and domain information |
|---|
Probab=88.02 E-value=12 Score=29.85 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 019522 284 GFIFATFMLASMLGSSLASRLMARSPPR 311 (340)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 311 (340)
......+.++.++..+..+...++.++|
T Consensus 153 ~l~m~~FgLGT~p~ll~~~~~~~~l~~~ 180 (199)
T PF13386_consen 153 ALLMLAFGLGTLPALLLAGLLAGKLSRR 180 (199)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3556677777777766666666655443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=87.31 E-value=2.1 Score=35.51 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=13.4
Q ss_pred HHHHHHhhchhHHHHHHHHHH
Q 019522 238 GAAVAIASDEKIALLGAIQSL 258 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~ 258 (340)
+...+.+|++..+........
T Consensus 85 ~s~~~~LK~K~tw~w~~~Yg~ 105 (267)
T PF07672_consen 85 PSYKSILKEKETWKWILIYGI 105 (267)
T ss_pred chHHHHHccchHHHHHHHHHH
Confidence 455677888887765554443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=86.60 E-value=4.1 Score=27.37 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=42.9
Q ss_pred HhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 019522 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSV 335 (340)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (340)
+..+|...++ .+.+. +.+.+.+.++..+|.+...++.++.+++ +.+..+.....+......+.++
T Consensus 12 TplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 12 TPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR--RLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555544 34443 5778899999999999999998885444 4566666666665555555443
|
Note that many members are hypothetical proteins. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=86.47 E-value=1.8 Score=31.40 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 289 TFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 289 ~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
...++..++.+..+++.||+|||+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~ 29 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKP 29 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhH
Confidence 346778889999999999999885
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.22 E-value=2.6 Score=38.54 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=18.1
Q ss_pred hhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 174 GNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 174 g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
+..++..++|.+........|.+|.+.+.....+
T Consensus 432 ~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l 465 (488)
T KOG2325|consen 432 SGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLL 465 (488)
T ss_pred ccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHH
Confidence 3335556666666655555666665544433333
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.97 E-value=11 Score=32.46 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=49.3
Q ss_pred hHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhh
Q 019522 74 IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFES 147 (340)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 147 (340)
.|.+...-.+-..+.......+.||+---.=.....++.+.+. +.+++++.+.-+.+-.+..++.|.......+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~ 138 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLA 138 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhh
Confidence 3455555555555666666778888743333344455556677 7799999998888888888888877655434
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.45 E-value=33 Score=31.53 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHhhCCC---hhhhHHHHHHHHh-hhhhhhhhhhhccccccchHHHHHHHHHH
Q 019522 37 SFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFG---KGEIGQLFIAGFG-SSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (340)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s---~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (340)
|..+.-++-..+..++-.+...++-.+.+.+.++ ++.+..+-+...+ ++.+..++.+++.++..+.+++-..+..+
T Consensus 23 r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F 102 (509)
T COG3202 23 RYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFF 102 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3344444444444444444444555566666544 4455666665555 45566668899999999999987776665
Q ss_pred HHHh
Q 019522 113 ILSC 116 (340)
Q Consensus 113 ~~~~ 116 (340)
....
T Consensus 103 ~~fF 106 (509)
T COG3202 103 LGFF 106 (509)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK11469 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.85 E-value=13 Score=29.39 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=18.9
Q ss_pred hhhccccccchHHHHHHHHHHHHHh
Q 019522 92 VGSLADKQGRKRACVTYCLTYILSC 116 (340)
Q Consensus 92 ~G~l~Dr~Grr~~l~~~~~~~~~~~ 116 (340)
..++.+++|+|.-+..+.++..++.
T Consensus 155 G~~~g~~~g~~a~~lgG~iLI~iGi 179 (188)
T PRK11469 155 GRFIGSIIGKKAEILGGLVLIGIGV 179 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677888888888888887776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 340 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.91 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.91 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.88 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.8 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.72 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.37 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.32 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.13 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.06 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.89 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.67 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.4 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=218.54 Aligned_cols=260 Identities=13% Similarity=0.158 Sum_probs=183.9
Q ss_pred hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hh---hccchHHHHHHHHH
Q 019522 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMIGRI 132 (340)
Q Consensus 57 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~---~~~~~~~~l~~~r~ 132 (340)
.+..|.+.+++|.++.+.|++.+...++..+++++.|+++||+|||+++..+.++.+++. +. +++++++.+++.|+
T Consensus 46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (438)
T 3o7q_A 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999999999999999988 77 78899999999999
Q ss_pred HHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh-cccCCC------------
Q 019522 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV-DSFSLG------------ 196 (340)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~-~~~~~~------------ 196 (340)
+.|++.+...+...+ ++.|. ++|++..+......+ +|..+++.++..+. +..+ .
T Consensus 126 l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~--------~g~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~ 195 (438)
T 3o7q_A 126 IIAAGLGCLETAANP-FVTVLGPESSGHFRLNLAQTFNS--------FGAIIAVVFGQSLILSNVP-HQSQDVLDKMSPE 195 (438)
T ss_dssp HHHHHHHHHHHHHHH-HHHHSSCSTTHHHHHHHHHHHHH--------HHHHHHHHHTTHHHHTSSC-CCCHHHHHHSCHH
T ss_pred HHHhhHHHhhhhHHH-HHHHHcCchhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccc-cccccccccCCcc
Confidence 999999999888867 88776 555554444444433 44455555555444 2222 2
Q ss_pred ------------cchhhhhHHHHHHHHHHHHh-cccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhH
Q 019522 197 ------------PVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM 263 (340)
Q Consensus 197 ------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (340)
|++.|...+....+...... .+.||++++++++++ .++.++..++++|+|+++.......+.....
T Consensus 196 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T 3o7q_A 196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-QGSFSASLSRLARIRHWRWAVLAQFCYVGAQ 274 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc-ccchhhhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 66777655544444333332 334544333211111 1222345567889999888766655544444
Q ss_pred HHHHHhhcccc-ccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHH
Q 019522 264 YTFVFLWTPAL-SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP 330 (340)
Q Consensus 264 ~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 330 (340)
.. ...+.|.| .++..|.+. +.......++.++++++.+++.||+++|+ .+........+...+.
T Consensus 275 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 275 TA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAMALCLIS 342 (438)
T ss_dssp HH-HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHH
Confidence 44 57888998 877767655 45666778889999999999999999884 4544444444444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=202.04 Aligned_cols=264 Identities=12% Similarity=0.116 Sum_probs=181.7
Q ss_pred cchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHH
Q 019522 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (340)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (340)
++.+++.+.......+..+++ .+.+|.+.+++ .++.+.|++.+...++..+++++.|+++||+|||+++..+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344455555555555555554 57789999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHh-hhhc----cchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHH
Q 019522 112 YILSC-ITKH----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG 183 (340)
Q Consensus 112 ~~~~~-~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (340)
.+++. ++++ +++++.+++.|+++|++.+...+...+ ++.|. ++|++..+..... ..+|..+|+.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~----~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSVWNCA----HNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHHHHHH----HHHHHTSHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHHHCCchhhhHHHHHHHHH----HHHHHHHHHHHHH
Confidence 99988 7788 899999999999999999999888877 87776 5566644443333 3344444444444
Q ss_pred hhhhhhhcccC-CCcchhhhhHHHHHHHHHHHHhcccccccCCC-----cc-chH---H---HH--H--HHH-HHHHHhh
Q 019522 184 LFGNLLVDSFS-LGPVAPFDAAACFLAIGMVIILSSWTENYGDP-----SE-SKD---L---LT--Q--FRG-AAVAIAS 245 (340)
Q Consensus 184 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~---~---~~--~--~~~-~~~~~~~ 245 (340)
. +.+..+ |+ ..|++.+++.++..++.....+|++.+. ++ +++ . .+ + .++ ..++.+|
T Consensus 177 ~----l~~~~g~w~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (451)
T 1pw4_A 177 L----GMAWFNDWH--AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 250 (451)
T ss_dssp H----HHHHTCCST--TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSS
T ss_pred H----HHHHhccHH--HHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHc
Confidence 3 333344 55 5566666555444333322333322110 00 000 0 00 0 000 1345677
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhC--CCCc
Q 019522 246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRV 312 (340)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~ 312 (340)
+|+++...+...+.....+. ...+.|.|.++..+.+. +.......++.+++.++.+++.||+ ++|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 321 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 88888776665555554444 57889999988777766 3566777888999999999999999 7774
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=184.07 Aligned_cols=269 Identities=13% Similarity=0.064 Sum_probs=163.2
Q ss_pred hhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCC--------hhhhHHHHHHHHhhhhhhhhhhhhccccccchHHH
Q 019522 38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC 105 (340)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l 105 (340)
+.+.+..+..+..+.+++| ++.+|.+.++++.+ ..+.|++.+...++..++++++|+++||+|||+++
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3344444445556677777 34477777776432 34567888888888888999999999999999999
Q ss_pred HHHHHHHHHHh-hhh------------------ccchHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHH
Q 019522 106 VTYCLTYILSC-ITK------------------HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWL 163 (340)
Q Consensus 106 ~~~~~~~~~~~-~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~ 163 (340)
..+.+++.++. +++ +++|++.++++|+++|++.|...+.... +++|. ++|++..+..
T Consensus 89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~-~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM-YIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCHHhhhhhHHhh
Confidence 99999999877 665 4789999999999999999999888856 88887 5666644444
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhh--cccCCCcchhhhhHHHHHHHHHHHHhccccccc------CCCccchHHHHH
Q 019522 164 SITFSKAIFLGNGLVAILSGLFGNLLV--DSFSLGPVAPFDAAACFLAIGMVIILSSWTENY------GDPSESKDLLTQ 235 (340)
Q Consensus 164 ~~~~~~~~~~g~~ig~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 235 (340)
..... .|..++..++........ ....+.|+..+.......++..... ...||++ ++++++++..++
T Consensus 168 ~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 168 QFAII----FGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp HHHHH----HHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhh----hhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHH
Confidence 44443 333333333332222111 0112446666666666555555444 4556542 222222111111
Q ss_pred HHH----------------------HHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh--hHHHHHHH
Q 019522 236 FRG----------------------AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATFM 291 (340)
Q Consensus 236 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 291 (340)
... ......+.++.........+.+...+.....+.|.+.++....+. ........
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
T 4gc0_A 243 IMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHH
Confidence 100 001122234444433444444444444445566655544322222 23445567
Q ss_pred HHHHHHHHHHHHHHhhCCCCc
Q 019522 292 LASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 292 ~~~~~~~~~~g~l~dr~g~~~ 312 (340)
+..+++.++.+++.||+|||+
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~ 343 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKP 343 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHHHHHHHHHHHhhcCcc
Confidence 778899999999999999995
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=187.49 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=175.2
Q ss_pred HhhhhHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHH
Q 019522 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR 131 (340)
Q Consensus 53 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r 131 (340)
.....|..|.+.+++|.|+.+.+++.+...+...+.+++.|+++||+|||+++..+..+.+++. +.+++++++.+++.|
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAAS 95 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3444688999999999999999999999999999999999999999999999999999999988 778899999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHH
Q 019522 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (340)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (340)
++.|++.+...+...+ ++.|. ++|++..+......+ +|..+++.++..+.+..+ |+..+.+.++..
T Consensus 96 ~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~ 164 (375)
T 2gfp_A 96 AMQGMGTGVGGVMART-LPRDLYERTQLRHANSLLNMGIL--------VSPLLAPLIGGLLDTMWN--WRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHTSSCCSHHHHHHHHHH--------HHHHHHHHHHHHSSCHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHH-HHHHHCCHHHHHHHHHHHHHHHH--------HHHHhhHHHHHHHHHhcc--HHHHHHHHHHHH
Confidence 9999999998888766 77765 667775554444333 444555555555544434 557777766666
Q ss_pred HHHHHHHhcccccccCCCccchHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hH
Q 019522 209 AIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF 285 (340)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 285 (340)
++..+......||++++++++++ .+++.++.+|+|+++.......+....... ...+.|.|.++..|.++ +.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~ 239 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPVDAPRTR----LLTSYKTLFGNSGFNCYLLMLIGGLAGIAA-FEACSGVLMGAVLGLSSMTVSI 239 (375)
T ss_dssp HHHHCCCCCSSCCCSTTTCCCCC----TTTCSTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccCCCCccccc----HHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHH
Confidence 55554343455555433322211 112334567788887766655555444444 57889999887666655 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC
Q 019522 286 IFATFMLASMLGSSLASRLMARSPP 310 (340)
Q Consensus 286 ~~~~~~~~~~~~~~~~g~l~dr~g~ 310 (340)
......++.+++.++.+++.||.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 240 LFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888888888888888765
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-21 Score=174.86 Aligned_cols=137 Identities=21% Similarity=0.122 Sum_probs=102.5
Q ss_pred hCCChhhhHHHHHHHHhhhhhhhhhhhhcccc-ccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhh
Q 019522 67 YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSA 144 (340)
Q Consensus 67 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (340)
+|.++.+.+++.+...++..+++++.|+++|| +|||+++..+.++.+++. ++++++|++.+++.|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 899999999999999988 7889999999999999999999999888
Q ss_pred hhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHH
Q 019522 145 FESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (340)
Q Consensus 145 ~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
..+ ++.|. ++|++ +...+..+.... +|..+++.+++.+.+..+ |+..|++.++..++..
T Consensus 129 ~~~-~~~~~~~~~~~~r--~~~~~~~~~~~~----~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 129 VST-LVGTLYDEHDRRR--DAGFSIFVFGIN----LGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHH-HHHHHSSSCTTHH--HHHHHHHHHHHH----HHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHcCcccccc--eeeehHHHHHHH----HHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHH
Confidence 766 77775 33222 112222333333 444555555555555455 4466766654444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-20 Score=162.92 Aligned_cols=261 Identities=15% Similarity=0.091 Sum_probs=138.4
Q ss_pred HHHhhhhHHHHHHH-HhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh----hhhccchHH
Q 019522 51 AGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHSPQYK 125 (340)
Q Consensus 51 ~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~----~~~~~~~~~ 125 (340)
...+...|++|.+. +++|.|+.+.|.+.+...++..+++++.|+++||+|||+++..+..+.++.. ...+.+...
T Consensus 21 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2cfq_A 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344467777755 4689999999999999999999999999999999999999998887765422 112222211
Q ss_pred -HHHHHHHHHHHHhhhhhhhhhh---hhhccc-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchh
Q 019522 126 -ILMIGRILGGIATSLLFSAFES---WLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP 200 (340)
Q Consensus 126 -~l~~~r~l~G~~~~~~~~~~~~---~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~ 200 (340)
.+...+.+.|++.+...+...+ .+..|. ++++...+.... +..+|..+++.++.++.+ .+ |+..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~g~~~~~~l~~~l~~-~~--~~~~ 169 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM--------FGCVGWALGASIVGIMFT-IN--NQFV 169 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSS--------STTTHHHHHHHHHHHHHH-HC--SHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHH--------HHHHHHHHHHHHHHHHHH-hc--hhHH
Confidence 1233444444444333322222 133222 223332222221 222444455555555443 23 4466
Q ss_pred hhhHHHHHHHHHHHHhcccccccCCC--ccc--hHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhHHHHHHhhcccccc
Q 019522 201 FDAAACFLAIGMVIILSSWTENYGDP--SES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP 276 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (340)
|++.++..++.........||++++. +++ ++..+...++.++.+|+|+++.......... ..+.....+.|.|.+
T Consensus 170 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 248 (417)
T 2cfq_A 170 FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFT 248 (417)
T ss_dssp HTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 76655444333333322222221100 000 0000001123345678888776554433322 233333455666654
Q ss_pred CCCCch---h---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 019522 277 NDEEIP---H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV 325 (340)
Q Consensus 277 ~~~~~~---~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 325 (340)
+..+.. . +.......++.+++.++.+++.||+|+|+ .+..+....++
T Consensus 249 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~--~l~~~~~~~~~ 301 (417)
T 2cfq_A 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN--ALLLAGTIMSV 301 (417)
T ss_dssp HTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHH
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH--HHHHHHHHHHH
Confidence 433321 1 34455566778889999999999999884 44444433333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-17 Score=147.96 Aligned_cols=168 Identities=12% Similarity=0.157 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHH-HHHHhhC------CChhhhHHHHHHHHhhhhhhhhhhhhccccc-cchHHHHHHHHH
Q 019522 40 NNYLLVYSLMMAGDWLQGPYVY-YLYSTYG------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLT 111 (340)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~ 111 (340)
+......++.........+.++ .+.+++| .++.+.|++.+...++..++.++.|+++||+ |||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3333334444333333345544 4567789 9999999999999999999999999999999 999999999999
Q ss_pred HHHHh-hhhccc-hHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 112 YILSC-ITKHSP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 112 ~~~~~-~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
.+++. +.++++ +++.+++.|++.|++.+...+...+ ++.|. ++|++..+.... .. .+..+|..+++.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~-~~----~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNKSLAQKAFDM-FY----FTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTTTHHHHHHHH-HH----HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH-HHHHHcCccchHHHHHHHHH-HH----HHHHHHHHHHHHHH
Confidence 99988 778888 9999999999999999999888766 77775 445443332111 22 23335666666666
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHHHHHH
Q 019522 187 NLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (340)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
..+.+..+ |+..|.+.++..++..+..
T Consensus 169 ~~l~~~~g--~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 169 PLLLKNFG--AAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp THHHHTSC--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccc--HHHHHHHHHHHHHHHHHHH
Confidence 66665545 5566777666555544443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-11 Score=109.65 Aligned_cols=149 Identities=12% Similarity=0.041 Sum_probs=101.2
Q ss_pred hHHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccc--cchHHHHHHHHHHH-HHh-hhhcc--chHHHHHH
Q 019522 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYI-LSC-ITKHS--PQYKILMI 129 (340)
Q Consensus 57 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~--Grr~~l~~~~~~~~-~~~-~~~~~--~~~~~l~~ 129 (340)
..+.|.+.++ +|.++.+.+.+.+...++..++.++.|++.||+ |||+.+..+..+.. ++. +..+. ++.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 4567777776 899999999999999888889999999999999 99999888877766 555 44554 36777778
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHH
Q 019522 130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC 206 (340)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 206 (340)
..++.|++.+...+.... ++.|. ++|+...+....... + +|..+++.+.+.+.+..++ ...|++.++
T Consensus 352 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~----~---~g~~~~~~~~g~l~~~~g~--~~~~~~~~~ 421 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGL-HALELAPKKAAGTAAGFTGLFGY----L---GGSVAASAIVGYTVDFFGW--DGGFMVMIG 421 (451)
T ss_dssp HHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHSSCS--HHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHH-HHHHHhchhhhhhHHHHHHHHHH----H---HHHHHHHHHHHHHHHhcCc--HHHHHHHHH
Confidence 888899988887776545 66665 345553333333222 2 1445555555555554554 456666555
Q ss_pred HHHHHHHHH
Q 019522 207 FLAIGMVII 215 (340)
Q Consensus 207 ~~~~~~~~~ 215 (340)
+.++..+..
T Consensus 422 ~~~~~~~~~ 430 (451)
T 1pw4_A 422 GSILAVILL 430 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-10 Score=103.07 Aligned_cols=144 Identities=12% Similarity=0.062 Sum_probs=97.6
Q ss_pred hHHHHHH-HHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHH
Q 019522 57 GPYVYYL-YST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (340)
Q Consensus 57 ~~~~~~~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l 133 (340)
..+.|.+ .++ +|.++.+.+...+...++..++.++.|+++||+|||+.+..+.++..++. +..+.++...+.. -++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 356 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTL 356 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHH
Confidence 3556666 555 59999999999999888888999999999999999999999998888877 6677777665444 488
Q ss_pred HHHHhhhhhhhhhhhhhccc-c-ccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccC-CCcchhhhhHHHHHHH
Q 019522 134 GGIATSLLFSAFESWLVAEH-N-KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAPFDAAACFLAI 210 (340)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~-~-~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 210 (340)
.|++.+...+...+ +..|. . +++.. ..... .+ .+|..+++.+.+.+.+..+ ++ ..|.+.++..++
T Consensus 357 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~----~~-~~g~~~~~~~~g~l~~~~g~~~--~~~~~~~~~~~~ 424 (438)
T 3o7q_A 357 CSAFMSIQYPTIFS-LGIKNLGQDTKYG----SSFIV----MT-IIGGGIVTPVMGFVSDAAGNIP--TAELIPALCFAV 424 (438)
T ss_dssp HHHHHTTHHHHHHH-HHHSSCGGGHHHH----HHHHH----HT-THHHHHHHHHHHHHHHHHTSSG--GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhhccccccch----hhHHH----HH-HHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHH
Confidence 88888888887766 54554 2 22221 11111 11 2555666666666665555 44 455555444444
Q ss_pred HHH
Q 019522 211 GMV 213 (340)
Q Consensus 211 ~~~ 213 (340)
..+
T Consensus 425 ~~~ 427 (438)
T 3o7q_A 425 IFI 427 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-10 Score=99.02 Aligned_cols=144 Identities=9% Similarity=0.018 Sum_probs=88.8
Q ss_pred hhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 019522 71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWL 149 (340)
Q Consensus 71 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (340)
..+.+...+...+...++.++.|+++||+|||+++..+..+.+++. ..++.++.+.+++..++.+++.+...+.... +
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445666666666667777889999999999999998888887776 6667777777777777888876665555544 6
Q ss_pred hccccccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhccccc
Q 019522 150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221 (340)
Q Consensus 150 i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (340)
+.|..+...+ ...++.....+..+|..++|.+.+.+.+..+ +...|...+++.++..+......+|
T Consensus 337 ~~~~~p~~~~----g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 337 ITSQFEVRFS----ATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCHHHH----HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCHHHH----HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 6665222111 1111211223333555556665555554433 3455666666666555554333343
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-09 Score=95.37 Aligned_cols=146 Identities=11% Similarity=-0.090 Sum_probs=89.4
Q ss_pred HHHHHHHHh-hCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHH-----HHHHHHHHHh-hhhcc---------
Q 019522 58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-----TYCLTYILSC-ITKHS--------- 121 (340)
Q Consensus 58 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~-----~~~~~~~~~~-~~~~~--------- 121 (340)
...|.+.++ ++.+..+.+.......+...+..++.|++.||+|||+... .+..+.+++. +....
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 335555544 6666667777777777777788888999999999987655 6666666665 44442
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcc
Q 019522 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (340)
Q Consensus 122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~ 198 (340)
.+.+.+.+..++.|++.+...+.... ++.|. +.|+...+....... +|..+++.+.+.+.+. + ..
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~~--------~g~~i~~~~~~~~~~~-~--~~ 451 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISPVGLS-VTTKLAPKAFNSQMMSMWFLSSS--------VGSALNAQLVTLYNAK-S--EV 451 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTTHHHH-HHHHHTTTTCSSSSTHHHHHHHH--------HHHHHHHHHGGGGGGS-S--TT
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcc-c--HH
Confidence 26677778889999998887777756 66654 557775554433333 4444455454444332 2 22
Q ss_pred hhhhhHHHHHHHHHHHH
Q 019522 199 APFDAAACFLAIGMVII 215 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~ 215 (340)
..+...+.+.++..+..
T Consensus 452 ~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 452 AYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555554444444443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=92.34 Aligned_cols=165 Identities=16% Similarity=0.038 Sum_probs=93.2
Q ss_pred HHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhc-----cchHHHHH-HH
Q 019522 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-----SPQYKILM-IG 130 (340)
Q Consensus 58 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~-----~~~~~~l~-~~ 130 (340)
.+.|.+.++.+.+..+.........+...+..++.+.+.||+|||+.+..+.....++. ..+. .++...+. ..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 377 (491)
T 4gc0_A 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 377 (491)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 44677888888887777666666666677778889999999999999998888777655 3221 12222222 12
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
-+..+.+.+. .+.. ..+.+|. +.|+...++...... ++..+++.+.|.+........++++...|++.+++
T Consensus 378 ~~~~~~~~~~-~~~~-~~~~~E~fPt~~R~~~~g~~~~~~~----~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 378 FYVAAFAMSW-GPVC-WVLLSEIFPNAIRGKALAIAVAAQW----LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHTTT-THHH-HHHHHHSSCTTTHHHHHHHHHHHHH----HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhHH-HHHH-HHHHHHhCCHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 2222222222 2333 2266775 556664444433333 23323333333332211111112233567777777
Q ss_pred HHHHHHHHhcccccccCCCcc
Q 019522 208 LAIGMVIILSSWTENYGDPSE 228 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ 228 (340)
.++..++.....||++++.-|
T Consensus 452 ~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHHHHHheecCCCCCCHH
Confidence 777777666788999887644
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-09 Score=90.99 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=78.1
Q ss_pred HHHHHHHH-hhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHH-HHHHh-hh--hc--cchHHHHHHH
Q 019522 58 PYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT-YILSC-IT--KH--SPQYKILMIG 130 (340)
Q Consensus 58 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~-~~--~~--~~~~~~l~~~ 130 (340)
.+.|.+.+ ++|.++.+.+.+.+...++..++.++.|++.||+|+| +..+... ...+. .. .. .++.+.+.+.
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T 2gfp_A 220 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVP 297 (375)
T ss_dssp HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence 34444444 4888999999998888888888888999999999883 2333333 22232 21 22 2366677778
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc--cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 019522 131 RILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD 191 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~ 191 (340)
.++.|++.+...+...+ ++.|. ++|++..+...... .+|..+++.+.+.+.+
T Consensus 298 ~~l~g~~~~~~~~~~~~-~~~~~~p~~~g~~~g~~~~~~--------~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 298 AALFFFGAGMLFPLATS-GAMEPFPFLAGTAGALVGGLQ--------NIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHHHHTSSTTHH-HHHTHHHHHHHHHHHHHHHHH--------HHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHHhhHHHHH-HHHHhCCcccchHHHHHHHHH--------HHHHHHHHHHHHHHhc
Confidence 88999999988887766 66665 44555333333222 2455555555555444
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-06 Score=77.38 Aligned_cols=107 Identities=11% Similarity=-0.016 Sum_probs=61.5
Q ss_pred hHHHHHHHHhhhhhhhhhhhhcc----ccccc----hHHHHHHHHHHHHHh-hhhcc---------chHHHHHHHHHHHH
Q 019522 74 IGQLFIAGFGSSMLFGTIVGSLA----DKQGR----KRACVTYCLTYILSC-ITKHS---------PQYKILMIGRILGG 135 (340)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~G~l~----Dr~Gr----r~~l~~~~~~~~~~~-~~~~~---------~~~~~l~~~r~l~G 135 (340)
.+.+.....+...+.+++.+++. ||.|+ ++.+..+.++.+++. +.++. .+.+.+.+..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 44554444444555666666654 55543 356667777777766 44442 36677778889999
Q ss_pred HHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhh
Q 019522 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (340)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~ 185 (340)
++.+...+.... ++.|. ++|+...+....... +|..+|+.+.+.+
T Consensus 417 ~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~~----~g~~~g~~~~g~~ 464 (524)
T 2xut_A 417 FGEVLVSATGLE-FAYSQAPKAMKGTIMSFWTLSVT----VGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHTT-THHHHCCTTCCTTTHHHHGGGHH----HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HHHHhCcHHHHhHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 999888877655 65554 667775555544443 3444444444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 340 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.004 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 36.3 bits (82), Expect = 0.004
Identities = 25/250 (10%), Positives = 61/250 (24%), Gaps = 2/250 (0%)
Query: 44 LVYSLMMAGDWLQGPYV-YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK 102
L + P+ +L+ K + G +F A S+LF + G L+DK G +
Sbjct: 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73
Query: 103 RACVTYCLTY-ILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQ 161
+ + ++ +L ++G I + + +
Sbjct: 74 KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133
Query: 162 WLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221
S + + L ++ + A LA+ + +
Sbjct: 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193
Query: 222 NYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI 281
+ + + F + ++ + Y +
Sbjct: 194 SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT 253
Query: 282 PHGFIFATFM 291
Sbjct: 254 GEQGTRVFGY 263
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 340 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.93 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.78 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.31 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.02 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.2e-24 Score=193.48 Aligned_cols=268 Identities=12% Similarity=0.119 Sum_probs=177.9
Q ss_pred ccccchhhHHHHHHHHHHHHHhhh----hHHHHHHHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHH
Q 019522 33 SAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY 108 (340)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~ 108 (340)
+..++.+|.++..+++......++ ....|.+ +|+|+|++|+|++.+...++..+++++.|+++||+|||+++..+
T Consensus 17 ~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 17 PTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 445667787777777776666655 2335655 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hhhcc----chHHHHHHHHHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHH
Q 019522 109 CLTYILSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAI 180 (340)
Q Consensus 109 ~~~~~~~~-~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~ 180 (340)
.++.+++. +++++ ++++.+++.|++.|++.+...+...+ ++.|. ++|++..+...... .+|..+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~----~~g~~i~~~ 170 (447)
T d1pw4a_ 96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSVWNCAH----NVGGGIPPL 170 (447)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHHHHHHH----HHHHTSHHH
T ss_pred HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHhhccccccccccccc----chhhhhhhh
Confidence 99998877 66654 46779999999999999999888866 77775 55666444443333 344444444
Q ss_pred HHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhccc---ccccCCC--cc-----chHHHHH-------HHHHHHHH
Q 019522 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSW---TENYGDP--SE-----SKDLLTQ-------FRGAAVAI 243 (340)
Q Consensus 181 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~-----~~~~~~~-------~~~~~~~~ 243 (340)
++...... ..+|+ ..+.+.+.+..+..++..... |++++.. ++ .++..++ .+...+..
T Consensus 171 ~~~~~~~~---~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (447)
T d1pw4a_ 171 LFLLGMAW---FNDWH--AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYV 245 (447)
T ss_dssp HHHHHHHH---TCCST--TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHT
T ss_pred hhhhHhhh---hhccc--ccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHH
Confidence 44433332 12444 445554444433333332222 2211100 00 0000000 01123456
Q ss_pred hhchhHHHHHHHHHHhhhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 019522 244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRV 312 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 312 (340)
++++.++.......+.....+. ...+.|.|.++..+.+. +.......+..+++.++.+++.||.++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (447)
T d1pw4a_ 246 LPNKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN 316 (447)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HcCchHHHHHHHhhhhhhhhhc-chhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc
Confidence 7778887776666655555555 47888999988777665 35556678889999999999999998875
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=8.3e-18 Score=146.47 Aligned_cols=280 Identities=16% Similarity=0.060 Sum_probs=144.5
Q ss_pred chhhHHHHHHHHHHHHHhhhhHHHHH-HHHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHH
Q 019522 37 SFKNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS 115 (340)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~ 115 (340)
|..|.+....++..+..+...|++|. +.+++|+|++|+|++.+...+...+.+++.|+++||+||||++..+.....++
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~ 86 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 44565555566666666666788876 45678999999999999999999999999999999999999999998888887
Q ss_pred h-hhhccchHHHH----HHHHHHHHHHhhhhhhhhhhhhhcc---c-cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 019522 116 C-ITKHSPQYKIL----MIGRILGGIATSLLFSAFESWLVAE---H-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (340)
Q Consensus 116 ~-~~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~~i~~---~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 186 (340)
. +..+.++.... +..+.+.+.+.+............. . +++....... ......+..+++.+++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~ 162 (417)
T d1pv7a_ 87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRA----RMFGCVGWALGASIVGIMF 162 (417)
T ss_dssp HHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHH----hhhhccccccccccccccc
Confidence 6 55555554443 3334444444333333322211111 1 2222222222 2222333334444444443
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHHHHHHhcccccccCCCccchHHHH----HHHHHHHHHhhchhHHHHHHH---HHHh
Q 019522 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLT----QFRGAAVAIASDEKIALLGAI---QSLF 259 (340)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~ 259 (340)
.. .|+..+........+.........++++.+++++++..+ ..........+++........ ....
T Consensus 163 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T d1pv7a_ 163 TI-------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp HH-------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred cc-------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHH
Confidence 32 233334444333333333333344433322222211110 001111222333332222221 1111
Q ss_pred hhhHHHHHHhhccccccCCCCchh---hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHH
Q 019522 260 EGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP 330 (340)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 330 (340)
....... ....+.+..+..+.+. +.......++..++....+++.||.++|+ .+.......++.....
T Consensus 236 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~ 306 (417)
T d1pv7a_ 236 YDVFDQQ-FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN--ALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHHHH-HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH--HHHHHHHHHHHHHHHH
T ss_pred HHhhhcc-ccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc--chhhhHHHHHHhhhcc
Confidence 1222221 1122222222222222 24445567778889999999999999884 4555544444444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.8e-11 Score=105.66 Aligned_cols=142 Identities=9% Similarity=0.009 Sum_probs=98.6
Q ss_pred ChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHHHhhhhhhhhhhh
Q 019522 70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESW 148 (340)
Q Consensus 70 s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 148 (340)
+..+.+.......+...++..+.+++.||+|+|+.+..+..+.+++. ...+.++.+.+.+..++.|++.+...+...+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~- 335 (417)
T d1pv7a_ 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK- 335 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH-
Confidence 34455666677777777888899999999999999999999998888 7788999999999999999999998888766
Q ss_pred hhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHHHHHHHHHHhccccc
Q 019522 149 LVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221 (340)
Q Consensus 149 ~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (340)
++.|. +.|+... +.....+..+|..+++.+.+++.+..|++ ..+++.+++.++..++.....++
T Consensus 336 ~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~i~~~~~G~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 336 YITSQFEVRFSATIY-------LVCFCFFKQLAMIFMSVLAGNMYESIGFQ--GAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHSCGGGHHHHH-------HHHHTTTHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHCCHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 77665 3333321 21222333455566666666666666654 55666655555544444333333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=4.8e-09 Score=91.48 Aligned_cols=144 Identities=13% Similarity=-0.010 Sum_probs=87.9
Q ss_pred HHHHHH-HHhhCCChhhhHHHHHHHHhhhhhhhhhhhhccccccchHHHHHHHHHHHH---Hh-hh--hccchHHHHHHH
Q 019522 58 PYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL---SC-IT--KHSPQYKILMIG 130 (340)
Q Consensus 58 ~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~---~~-~~--~~~~~~~~l~~~ 130 (340)
.+.|.+ .++.+.+..+.+.......+...++.++.|++.||++||+..........+ +. .. ...++.+...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (447)
T d1pw4a_ 270 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349 (447)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred hhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHH
Confidence 334444 456789999999999988888888999999999999987644433332222 22 22 234567777777
Q ss_pred HHHHHHHhhhhhhhhhhhhhccc---cccchhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcccCCCcchhhhhHHHH
Q 019522 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (340)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (340)
.++.|++.+...+.... +..|. +.|+...+.. ...++..|.+.++.+.+++.+..||+ ..+......
T Consensus 350 ~~~~g~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~-------~~~~~~~g~~~~~~~~g~~~~~~g~~--~~~~~~~~~ 419 (447)
T d1pw4a_ 350 MIVIGFLIYGPVMLIGL-HALELAPKKAAGTAAGFT-------GLFGYLGGSVAASAIVGYTVDFFGWD--GGFMVMIGG 419 (447)
T ss_dssp HHHHHHHHTHHHHHHHH-HHHHTSCTTHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHSSCSH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHH
Confidence 88888887777666544 66665 3344422222 22233234455666666666666665 445444443
Q ss_pred HHHH
Q 019522 208 LAIG 211 (340)
Q Consensus 208 ~~~~ 211 (340)
.++.
T Consensus 420 ~~~~ 423 (447)
T d1pw4a_ 420 SILA 423 (447)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|