Citrus Sinensis ID: 019552

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccEEEEccccccEEEEEccccccEEEEEHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
cccEEccHHHcccccccEEEEEccEEEccccccEEEcccccccccccccEEEEEEEccccccccccccHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccccEEEEcccccccEEEEEcHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHcccccccccccc
MATVTLSsslfstqkprtlsfsygvssdklnhtsfsgnfkfgsmkqsrrmrLVPVCRAAASVVFrdldaddfrhpldkQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGtsvlvsknqlpELHQLMTEAAEILNleapdlyvrqspvpnaytlaisgkkpFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANiltlgaytipgigGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLaggcpsladQLNVDAFLEQArsydkassspvgwyIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
matvtlssslfstqkprTLSFSygvssdklnhTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSydkassspvgWYIRNAqtrqlshpLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
MATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
************************************************RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKA*SSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASL*************
********SLFS***************************************LVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLAD*LNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDY****************
**********FSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQA*********PVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
*****L*SSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMK*******
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
Q8PSE5294 Protease HtpX homolog 2 O yes no 0.457 0.527 0.305 1e-11
Q8TP15294 Protease HtpX homolog 2 O yes no 0.457 0.527 0.288 3e-11
Q2RKK7299 Protease HtpX homolog OS= yes no 0.457 0.518 0.285 5e-10
Q3SW84307 Protease HtpX homolog OS= yes no 0.224 0.247 0.381 5e-08
B5YKM8282 Protease HtpX homolog OS= yes no 0.224 0.269 0.368 1e-07
Q8THH5286 Protease HtpX homolog 1 O no no 0.268 0.318 0.336 2e-07
A1AZW2292 Protease HtpX homolog OS= yes no 0.227 0.263 0.363 2e-07
A0QRJ0295 Protease HtpX homolog OS= no no 0.439 0.505 0.262 3e-07
B3QED3324 Protease HtpX homolog OS= yes no 0.289 0.302 0.342 3e-07
A3CLJ7298 Protease HtpX homolog OS= yes no 0.215 0.244 0.303 5e-07
>sp|Q8PSE5|HTPX2_METMA Protease HtpX homolog 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=htpX2 PE=3 SV=1 Back     alignment and function desciption
 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 25/180 (13%)

Query: 106 MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFV 165
           M+L   G  + VS+++ P+LH ++T    I +L  P + + ++ VPNA+    +  K  V
Sbjct: 61  MVLWTTGAQI-VSESEAPQLHGMITRLCAIADLPKPQVAIVRTQVPNAFATGRNQNKAVV 119

Query: 166 VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIP----GIGGMIAQ 221
            V T L++ L+  EL+AVLAHEL H+K      LT A+ L+  A+ I       G M   
Sbjct: 120 AVTTGLMDKLSPAELEAVLAHELSHVKNRDMAVLTIASFLSSVAFYIVRYSLYFGNMGGG 179

Query: 222 SLEEQ---LFRWL-----------------RAAELTCDRAALLVSQDPKVVISVLMKLAG 261
             +E    +  WL                 R  E + DR A +++  P  + S LMK++G
Sbjct: 180 RRKEGGGIMLVWLVSIVVWIVSFLLIRALSRYREFSADRGAAVITGQPANLASALMKISG 239

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q8TP15|HTPX2_METAC Protease HtpX homolog 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX2 PE=3 SV=1 Back     alignment and function description
>sp|Q2RKK7|HTPX_MOOTA Protease HtpX homolog OS=Moorella thermoacetica (strain ATCC 39073) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q3SW84|HTPX_NITWN Protease HtpX homolog OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|B5YKM8|HTPX_THEYD Protease HtpX homolog OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q8THH5|HTPX1_METAC Protease HtpX homolog 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX1 PE=3 SV=1 Back     alignment and function description
>sp|A1AZW2|HTPX_PARDP Protease HtpX homolog OS=Paracoccus denitrificans (strain Pd 1222) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|A0QRJ0|HTPX_MYCS2 Protease HtpX homolog OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|B3QED3|HTPX_RHOPT Protease HtpX homolog OS=Rhodopseudomonas palustris (strain TIE-1) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|A3CLJ7|HTPX_STRSV Protease HtpX homolog OS=Streptococcus sanguinis (strain SK36) GN=htpX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
225451439363 PREDICTED: uncharacterized protein LOC10 0.949 0.887 0.795 1e-151
255536903338 metalloendopeptidase, putative [Ricinus 0.967 0.970 0.780 1e-150
356558714329 PREDICTED: uncharacterized protein LOC10 0.870 0.896 0.833 1e-148
224060249347 predicted protein [Populus trichocarpa] 0.935 0.913 0.796 1e-144
449455858334 PREDICTED: protease HtpX homolog 1-like 0.979 0.994 0.758 1e-144
297814950344 peptidase M48 family protein [Arabidopsi 0.926 0.912 0.776 1e-143
18405231344 Peptidase family M48 family protein [Ara 0.926 0.912 0.776 1e-143
21553677344 unknown [Arabidopsis thaliana] 0.926 0.912 0.773 1e-142
357134404325 PREDICTED: uncharacterized protein LOC10 0.793 0.827 0.848 1e-134
414876777335 TPA: putative peptidase M48 family prote 0.858 0.868 0.779 1e-134
>gi|225451439|ref|XP_002273907.1| PREDICTED: uncharacterized protein LOC100263426 [Vitis vinifera] gi|296082349|emb|CBI21354.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/338 (79%), Positives = 301/338 (89%), Gaps = 16/338 (4%)

Query: 1   MATVTLSSSLFSTQKPRTLSFSYG-VSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAA 59
           MA+V LSS++F           +G +++ K   +SF    +F  +K+++R+R V VCRAA
Sbjct: 39  MASVPLSSTVF-----------FGSITAKKSRFSSFP--LEFRPLKKTQRVR-VSVCRAA 84

Query: 60  ASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK 119
            SVVFRDLDADDFRHPLDKQNTL+LRAIPGLN++G+ALLGTVTEQ+MLLENIGTSVLVSK
Sbjct: 85  -SVVFRDLDADDFRHPLDKQNTLILRAIPGLNEIGKALLGTVTEQVMLLENIGTSVLVSK 143

Query: 120 NQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE 179
           NQL +LHQLM EAAEILNL+APDLY+RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE
Sbjct: 144 NQLSDLHQLMLEAAEILNLDAPDLYIRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE 203

Query: 180 LQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCD 239
           LQAVLAHELGHLKCDHGVWLTFANILTLGAY++PG+GG+IA+ LEEQLFRWLRAAELTCD
Sbjct: 204 LQAVLAHELGHLKCDHGVWLTFANILTLGAYSLPGLGGLIARQLEEQLFRWLRAAELTCD 263

Query: 240 RAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQT 299
           RAALLV+QDPKVVISVLMKLAGG PSLADQLNVDAFLEQARSY+KASSSPVGWYIRNAQT
Sbjct: 264 RAALLVAQDPKVVISVLMKLAGGSPSLADQLNVDAFLEQARSYEKASSSPVGWYIRNAQT 323

Query: 300 RQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVH 337
           RQLSHPL VLRAREID WSRS+DY SLL RA  +N+V 
Sbjct: 324 RQLSHPLPVLRAREIDEWSRSKDYRSLLSRAAPINSVQ 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255536903|ref|XP_002509518.1| metalloendopeptidase, putative [Ricinus communis] gi|223549417|gb|EEF50905.1| metalloendopeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356558714|ref|XP_003547648.1| PREDICTED: uncharacterized protein LOC100776801 [Glycine max] Back     alignment and taxonomy information
>gi|224060249|ref|XP_002300105.1| predicted protein [Populus trichocarpa] gi|222847363|gb|EEE84910.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455858|ref|XP_004145667.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] gi|449521182|ref|XP_004167609.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297814950|ref|XP_002875358.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297321196|gb|EFH51617.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18405231|ref|NP_566808.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|30688648|ref|NP_850640.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|9279635|dbj|BAB01093.1| unnamed protein product [Arabidopsis thaliana] gi|15010606|gb|AAK73962.1| AT3g27110/MOJ10_21 [Arabidopsis thaliana] gi|27363402|gb|AAO11620.1| At3g27110/MOJ10_21 [Arabidopsis thaliana] gi|222423154|dbj|BAH19556.1| AT3G27110 [Arabidopsis thaliana] gi|332643747|gb|AEE77268.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|332643748|gb|AEE77269.1| Peptidase family M48 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553677|gb|AAM62770.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357134404|ref|XP_003568807.1| PREDICTED: uncharacterized protein LOC100839697 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|414876777|tpg|DAA53908.1| TPA: putative peptidase M48 family protein isoform 1 [Zea mays] gi|414876778|tpg|DAA53909.1| TPA: putative peptidase M48 family protein isoform 2 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
TAIR|locus:2092010344 AT3G27110 [Arabidopsis thalian 0.946 0.933 0.771 4e-129
UNIPROTKB|O53978348 Rv1977 "Uncharacterized protei 0.781 0.761 0.318 3.6e-34
UNIPROTKB|Q887E6 400 PSPTO_1350 "Uncharacterized pr 0.519 0.44 0.281 1.6e-07
UNIPROTKB|P65815286 htpX "Protease HtpX homolog" [ 0.221 0.262 0.32 2.2e-06
TIGR_CMR|CHY_0108281 CHY_0108 "peptidase, M48 famil 0.224 0.270 0.342 2.8e-06
TIGR_CMR|GSU_1189316 GSU_1189 "peptidase, M48 famil 0.259 0.278 0.326 3.8e-05
UNIPROTKB|Q8EKI3 447 SO_0110 "Zn-dependent protease 0.448 0.340 0.254 0.00036
TIGR_CMR|SO_0110 447 SO_0110 "conserved hypothetica 0.448 0.340 0.254 0.00036
UNIPROTKB|Q8EDL5287 htpX "Protease HtpX" [Shewanel 0.601 0.710 0.243 0.00098
UNIPROTKB|Q9KSY9287 htpX "Protease HtpX" [Vibrio c 0.377 0.445 0.263 0.00098
TAIR|locus:2092010 AT3G27110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
 Identities = 256/332 (77%), Positives = 286/332 (86%)

Query:     6 LSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSR-RMRLVPVCRAAASVVF 64
             LS SL   + P+ + FS G  S      S+ G   FG+ K  R R+R VP+CRA   ++F
Sbjct:    20 LSRSL-GYRLPKKVGFSSGRRS-----VSYIG---FGAEKVGRFRVR-VPICRAVPPLLF 69

Query:    65 RDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPE 124
             +DLDADDFRHP DKQNTLLLRAIPGLN+ G+ALLG++TEQIMLLENIGTSVLVSKNQL +
Sbjct:    70 KDLDADDFRHPFDKQNTLLLRAIPGLNEFGKALLGSMTEQIMLLENIGTSVLVSKNQLSD 129

Query:   125 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVL 184
             LH L+ EAAEILN+EAPDLYVRQSPVPNAYTLAISGKKPF+VVHTSL+ELLT  ELQAVL
Sbjct:   130 LHGLLVEAAEILNIEAPDLYVRQSPVPNAYTLAISGKKPFIVVHTSLIELLTSAELQAVL 189

Query:   185 AHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALL 244
             AHELGHLKCDHGVWLTFANILTLGAYT+P  G MIA++LEEQL RWLR+AELTCDRAALL
Sbjct:   190 AHELGHLKCDHGVWLTFANILTLGAYTVPAFGQMIARTLEEQLLRWLRSAELTCDRAALL 249

Query:   245 VSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSH 304
             V+QDPKVV+SVLMKLAGGCPS+ADQLNVDAFLEQARSYDKASSSP+GWYIRNAQT QLSH
Sbjct:   250 VAQDPKVVVSVLMKLAGGCPSIADQLNVDAFLEQARSYDKASSSPLGWYIRNAQTSQLSH 309

Query:   305 PLLVLRAREIDAWSRSQDYASLLKRAMKMNTV 336
             PL VLRAREID WSRS +Y SLLKRA + +TV
Sbjct:   310 PLPVLRAREIDEWSRSLEYKSLLKRANRKSTV 341
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
UNIPROTKB|O53978 Rv1977 "Uncharacterized protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms
UNIPROTKB|Q887E6 PSPTO_1350 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|P65815 htpX "Protease HtpX homolog" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0108 CHY_0108 "peptidase, M48 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1189 GSU_1189 "peptidase, M48 family" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EKI3 SO_0110 "Zn-dependent protease with chaperone function" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0110 SO_0110 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EDL5 htpX "Protease HtpX" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSY9 htpX "Protease HtpX" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.84LOW CONFIDENCE prediction!
3rd Layer3.4.240.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037849001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (433 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
COG0501302 COG0501, HtpX, Zn-dependent protease with chaperon 1e-25
PRK02391296 PRK02391, PRK02391, heat shock protein HtpX; Provi 3e-16
pfam01435223 pfam01435, Peptidase_M48, Peptidase family M48 5e-16
PRK03982288 PRK03982, PRK03982, heat shock protein HtpX; Provi 3e-12
PRK01265324 PRK01265, PRK01265, heat shock protein HtpX; Provi 1e-09
PRK04897298 PRK04897, PRK04897, heat shock protein HtpX; Provi 3e-09
PRK01345317 PRK01345, PRK01345, heat shock protein HtpX; Provi 6e-09
PRK02870336 PRK02870, PRK02870, heat shock protein HtpX; Provi 3e-08
PRK03001283 PRK03001, PRK03001, M48 family peptidase; Provisio 3e-08
PRK03072288 PRK03072, PRK03072, heat shock protein HtpX; Provi 2e-05
PRK05457284 PRK05457, PRK05457, heat shock protein HtpX; Provi 2e-04
>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  103 bits (259), Expect = 1e-25
 Identities = 59/262 (22%), Positives = 97/262 (37%), Gaps = 42/262 (16%)

Query: 87  IPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK--NQLPELHQLMTEAAEILNLEA---- 140
           I  L      L+  +  + ++L+++G   L             L+ + AE+         
Sbjct: 58  IALLLAFAALLISLLFSKALVLKSLGALTLSEPILLAPRLYAVLLLKVAELARQAGIPHM 117

Query: 141 PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH----- 195
           P++Y+ ++P PNA+ L    K   VVV T L++LL   EL+AVLAHELGH+K  H     
Sbjct: 118 PEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLLNDDELEAVLAHELGHIKNRHTLVRL 177

Query: 196 ----GVWLTFANILTL-----GAYTIPGIGGMIAQSLEEQLF-----RWLRAAELTCDRA 241
                +   F  + TL               ++   L   L       + R  E   DR 
Sbjct: 178 TLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLATLLVLAFSRKREYEADRF 237

Query: 242 ALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQ 301
           A  ++  P+ + S L KLA        +  + +                G+     Q   
Sbjct: 238 AAKLTG-PEKLASALQKLARLSGRANSKAFIAS----------------GFSGGRLQALF 280

Query: 302 LSHPLLVLRAREIDAWSRSQDY 323
            +HP L  R   +   + +   
Sbjct: 281 STHPPLAERIAALRQLALTVGI 302

Length = 302
>gnl|CDD|179418 PRK02391, PRK02391, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48 Back     alignment and domain information
>gnl|CDD|235186 PRK03982, PRK03982, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|234931 PRK01265, PRK01265, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235318 PRK04897, PRK04897, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|234944 PRK01345, PRK01345, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|179524 PRK03001, PRK03001, M48 family peptidase; Provisional Back     alignment and domain information
>gnl|CDD|235102 PRK03072, PRK03072, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
PRK04897298 heat shock protein HtpX; Provisional 100.0
PRK02870336 heat shock protein HtpX; Provisional 100.0
PRK02391296 heat shock protein HtpX; Provisional 100.0
PRK03072288 heat shock protein HtpX; Provisional 100.0
PRK03982288 heat shock protein HtpX; Provisional 100.0
PRK01345317 heat shock protein HtpX; Provisional 100.0
PRK03001283 M48 family peptidase; Provisional 100.0
PRK01265324 heat shock protein HtpX; Provisional 100.0
PRK05457284 heat shock protein HtpX; Provisional 100.0
COG0501302 HtpX Zn-dependent protease with chaperone function 99.96
PF01435226 Peptidase_M48: Peptidase family M48 This is family 99.94
COG4783 484 Putative Zn-dependent protease, contains TPR repea 99.86
KOG2719428 consensus Metalloprotease [General function predic 99.86
KOG2661424 consensus Peptidase family M48 [Posttranslational 99.77
COG4784 479 Putative Zn-dependent protease [General function p 99.77
PF05569299 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0 99.73
COG4219337 MecR1 Antirepressor regulating drug resistance, pr 99.51
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 97.63
PF04228292 Zn_peptidase: Putative neutral zinc metallopeptida 97.32
PF10463206 Peptidase_U49: Peptidase U49; InterPro: IPR019504 97.17
PF01863205 DUF45: Protein of unknown function DUF45; InterPro 96.77
PRK09672305 phage exclusion protein Lit; Provisional 96.68
PRK04351149 hypothetical protein; Provisional 96.3
COG1451223 Predicted metal-dependent hydrolase [General funct 95.91
smart00731146 SprT SprT homologues. Predicted to have roles in t 95.36
PF10263157 SprT-like: SprT-like family; InterPro: IPR006640 T 95.33
PF13203292 DUF2201_N: Putative metallopeptidase domain 95.23
PF10026195 DUF2268: Predicted Zn-dependent protease (DUF2268) 94.31
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 93.95
PRK04860160 hypothetical protein; Provisional 93.19
PF1369979 DUF4157: Domain of unknown function (DUF4157) 92.89
COG2856213 Predicted Zn peptidase [Amino acid transport and m 92.88
COG3091156 SprT Zn-dependent metalloprotease, SprT family [Ge 92.08
PF04298222 Zn_peptidase_2: Putative neutral zinc metallopepti 89.4
PF12388211 Peptidase_M57: Dual-action HEIGH metallo-peptidase 88.18
COG3590654 PepO Predicted metalloendopeptidase [Posttranslati 85.19
PF02031132 Peptidase_M7: Streptomyces extracellular neutral p 84.89
COG2321295 Predicted metalloprotease [General function predic 83.31
PF08325186 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1 82.06
PF14247220 DUF4344: Domain of unknown function (DUF4344) 80.15
>PRK04897 heat shock protein HtpX; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.1e-37  Score=290.96  Aligned_cols=260  Identities=17%  Similarity=0.222  Sum_probs=177.3

Q ss_pred             hhhccccc-ccceeeeeeeeheeeecCCCccccccccchhHHHHHHHccchhHHHHHHHHHHHHHHHHHHHhCcccccCC
Q 019552           41 FGSMKQSR-RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK  119 (339)
Q Consensus        41 ~~~~~~~~-~t~~~~~~~~~~~~~~~gl~~~~~~h~~d~~~~~~l~~ipg~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~  119 (339)
                      |.|+++|+ ||-+++ ..+...+.+.|...+.+..+ +......+..   +..++..++.++....+..+..+ .+++++
T Consensus         3 ~~~~~~n~~~t~~ll-~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-a~~v~~   76 (298)
T PRK04897          3 YEQIASNKRKTVFLL-VVFFLLLALVGAAVGYLFLN-SGLGGLIIAL---IIGVIYALIMIFQSTNVVMSMNH-AREVTE   76 (298)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-cchhHHHHHH---HHHHHHHHHHHHhhHHHHHHhCC-CEECCh
Confidence            78999999 887655 55545555555422211111 1111111111   22235567778888888877664 568889


Q ss_pred             CChHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchhHH
Q 019552          120 NQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWL  199 (339)
Q Consensus       120 ~~~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~~~  199 (339)
                      +|.|+|++.++++|++.|++.|++|+++++.+|||++|.++.++.|++++||++.+++||+++|+|||+||++++|..++
T Consensus        77 ~~~p~L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~~~d~~~~  156 (298)
T PRK04897         77 EEAPELWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISHIRNYDIRLS  156 (298)
T ss_pred             hhhHHHHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999999999999999877788999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHH-----------Hhc-----------hhhH----HHH---HH---HHH-H-HHHHHHHHHHHHHHHHHHHh
Q 019552          200 TFANILTLGA-----------YTI-----------PGIG----GMI---AQ---SLE-E-QLFRWLRAAELTCDRAALLV  245 (339)
Q Consensus       200 ~~~~~l~~~~-----------~~~-----------p~~~----~~i---~~---~l~-~-~l~~~sR~~E~~AD~~A~~~  245 (339)
                      ++...+..+.           ++.           +...    .++   ..   .+. . ..+.+||.+||+||++|+++
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~l  236 (298)
T PRK04897        157 TIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVEL  236 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            7654322111           000           0000    000   00   111 1 12468999999999999999


Q ss_pred             cCChHHHHHHHHHHhcCCCCCcccccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHHHHHHHHh
Q 019552          246 SQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDA  316 (339)
Q Consensus       246 ~~~p~~~~~aL~kla~~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~L~~  316 (339)
                      ++||+++++||.|++.++.... +.+.+    -+..|-     ..+.+......+++|||++.+||++|++
T Consensus       237 t~~p~~La~AL~KL~~~~~~~~-~~~~~----~~~~~i-----~~p~~~~~~~~lfsTHP~~~eRI~~L~~  297 (298)
T PRK04897        237 TRNPQGLISALEKISNSQPMKH-PVDDA----SAALYI-----SDPLKKKGLSKLFDTHPPIEERIERLKN  297 (298)
T ss_pred             hCCHHHHHHHHHHHHhcccccc-ccChH----HHHhcc-----CCCcccchHHHHHcCCcCHHHHHHHHHc
Confidence            9999999999999998654211 11110    001111     0111100123579999999999999985

>PRK02870 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK02391 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03072 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03982 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01345 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03001 M48 family peptidase; Provisional Back     alignment and domain information
>PRK01265 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK05457 heat shock protein HtpX; Provisional Back     alignment and domain information
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG2719 consensus Metalloprotease [General function prediction only] Back     alignment and domain information
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4784 Putative Zn-dependent protease [General function prediction only] Back     alignment and domain information
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases Back     alignment and domain information
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori Back     alignment and domain information
>PRK09672 phage exclusion protein Lit; Provisional Back     alignment and domain information
>PRK04351 hypothetical protein; Provisional Back     alignment and domain information
>COG1451 Predicted metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>smart00731 SprT SprT homologues Back     alignment and domain information
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT) Back     alignment and domain information
>PF13203 DUF2201_N: Putative metallopeptidase domain Back     alignment and domain information
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>PRK04860 hypothetical protein; Provisional Back     alignment and domain information
>PF13699 DUF4157: Domain of unknown function (DUF4157) Back     alignment and domain information
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only] Back     alignment and domain information
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases Back     alignment and domain information
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 Back     alignment and domain information
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG2321 Predicted metalloprotease [General function prediction only] Back     alignment and domain information
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase Back     alignment and domain information
>PF14247 DUF4344: Domain of unknown function (DUF4344) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3cqb_A107 Probable protease HTPX homolog; heat shock protein 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 1e-04
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 7e-04
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Length = 107 Back     alignment and structure
 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 117 VSKNQLPELHQLMT---EAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173
           +   +    H L+      A+   +  P + +  S   NA+          V V T L+ 
Sbjct: 17  IESPRNETEHWLLETVGRQAQQAGIGMPTVAIYDSADINAFATGAKRDDSLVAVSTGLLH 76

Query: 174 LLTRKELQAVLAHELGHLK 192
            +TR E +AVLAHE+ H+ 
Sbjct: 77  NMTRDEAEAVLAHEVSHIA 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253 Back     alignment and structure
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} Length = 482 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 99.95
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 99.94
3cqb_A107 Probable protease HTPX homolog; heat shock protein 99.79
3dte_A301 IRRE protein; radiotolerance, gene regulation, met 96.81
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A Back     alignment and structure
Probab=99.95  E-value=3.3e-27  Score=235.72  Aligned_cols=181  Identities=25%  Similarity=0.267  Sum_probs=133.6

Q ss_pred             ccCCCChHHHHHHHHHHHHHcCCCCCcEEEEe----CCCCcEEEeeccCCccEEEECHHHHhh-----------------
Q 019552          116 LVSKNQLPELHQLMTEAAEILNLEAPDLYVRQ----SPVPNAYTLAISGKKPFVVVHTSLVEL-----------------  174 (339)
Q Consensus       116 ~v~~~~~p~L~~~l~~l~~~lgi~~p~v~v~~----~~~~NAfa~G~~g~~~~IvI~~gLl~~-----------------  174 (339)
                      +.+|.++++|++.++++|+++|+|.|++||++    ++.+|||++|++ .++.||+.++|++.                 
T Consensus       225 k~~Pl~dg~L~~~Ie~la~~~~fp~~~v~vv~gSkRs~~~NAy~~G~~-~~krIVl~dtLl~~~~~~~~~~~~~~~~~~~  303 (482)
T 4aw6_A          225 KFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFF-KNKRIVLFDTLLEEYSVLNKDIQEDSGMEPR  303 (482)
T ss_dssp             CEEECCSSHHHHHHHHHHHHTTCCEEEEEEECGGGTBSCCCEEEEESS-SCEEEEEEHHHHC------------------
T ss_pred             CCccCCcHHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCceEEEcCC-CCcEEEEEchHHHhccccccccccccccccc
Confidence            45677888999999999999999999999999    789999999985 45688888999887                 


Q ss_pred             --------------------cCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH------Hhc---------------h
Q 019552          175 --------------------LTRKELQAVLAHELGHLKCDHGVWLTFANILTLGA------YTI---------------P  213 (339)
Q Consensus       175 --------------------L~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~~~------~~~---------------p  213 (339)
                                          |++||+++|+|||+||++++|..++++...+..+.      .+.               |
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~l~~~El~aVlaHElgH~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~l~~~~G~~~~~p  383 (482)
T 4aw6_A          304 NEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYDSQP  383 (482)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHTTCCSCCC
T ss_pred             ccccccchhhcccchhhccCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcchhhHhhcCCCCccc
Confidence                                89999999999999999999999887654332111      100               1


Q ss_pred             h-hHHHH-HH----H---H-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCcccccHHHHHHHHhhcc
Q 019552          214 G-IGGMI-AQ----S---L-EEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYD  283 (339)
Q Consensus       214 ~-~~~~i-~~----~---l-~~~l~~~sR~~E~~AD~~A~~~~~~p~~~~~aL~kla~~~~~~~~~~~~~~fl~qa~~~~  283 (339)
                      . ++.++ ..    +   + ......+||.+|++||++|+++ ++|++++++|.|++..+...                 
T Consensus       384 ~~~~~llv~~~i~~P~~~l~~~i~~~~SR~~E~eAD~~a~~l-g~p~~L~~AL~KL~~~n~s~-----------------  445 (482)
T 4aw6_A          384 TLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKL-GKAKDLYSALIKLNKDNLGF-----------------  445 (482)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHTTCC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccC-----------------
Confidence            1 11111 11    1   1 1133578999999999999998 67999999999998654221                 


Q ss_pred             ccCCCCCchhhhccccccCCCCChHHHHHHHHhhhhhhc
Q 019552          284 KASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQD  322 (339)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~L~~~~~s~~  322 (339)
                         ..+.+++    ..+++|||++.+||++|+++.++.+
T Consensus       446 ---~~~~~~~----~~~~sTHP~~~eRI~~L~~~~~~~~  477 (482)
T 4aw6_A          446 ---PVSDWLF----SMWHYSHPPLLERLQALKTMKQHAE  477 (482)
T ss_dssp             ---SCCCHHH----HHHSCSSCCHHHHHHHHHHC-----
T ss_pred             ---CCCChHH----HHHhcCCcCHHHHHHHHHHhhHhhh
Confidence               1122322    2468999999999999999876543
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Back     alignment and structure
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00