Citrus Sinensis ID: 019684
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | 2.2.26 [Sep-21-2011] | |||||||
| P23525 | 344 | 37 kDa inner envelope mem | N/A | no | 1.0 | 0.979 | 0.802 | 1e-154 | |
| C3MCY6 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.350 | 0.457 | 0.365 | 2e-10 | |
| A6UFF7 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.341 | 0.445 | 0.358 | 2e-09 | |
| Q92SK7 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.341 | 0.445 | 0.35 | 7e-09 | |
| Q8CSH9 | 241 | Demethylmenaquinone methy | yes | no | 0.391 | 0.547 | 0.351 | 2e-08 | |
| Q5HP74 | 241 | Demethylmenaquinone methy | yes | no | 0.391 | 0.547 | 0.351 | 2e-08 | |
| Q1RJY5 | 248 | Ubiquinone/menaquinone bi | yes | no | 0.436 | 0.592 | 0.254 | 2e-08 | |
| A8GXR2 | 248 | Ubiquinone/menaquinone bi | yes | no | 0.436 | 0.592 | 0.254 | 2e-08 | |
| A9ILA7 | 260 | Ubiquinone/menaquinone bi | yes | no | 0.409 | 0.530 | 0.291 | 2e-08 | |
| A8F2G9 | 248 | Ubiquinone/menaquinone bi | yes | no | 0.436 | 0.592 | 0.270 | 2e-08 |
| >sp|P23525|IN37_SPIOL 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 544 bits (1402), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/344 (80%), Positives = 305/344 (88%), Gaps = 7/344 (2%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKH-IPKLSLIAKPRTVQS------IKCS 53
MA SMLNG + LI G TP F SDF G + +P+L+L R +++ KC+
Sbjct: 1 MACSMLNGVDKLALISGKTPNRLRFSGSDFTGSYKLPRLNLPPNSRNLRAKTLTTVTKCT 60
Query: 54 LSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML 113
LSA+ RPASQPRFIQ+K+EAFWFYRFLSIVYD++INPGHWTEDMRD ALEPADL+NRNML
Sbjct: 61 LSASERPASQPRFIQNKQEAFWFYRFLSIVYDNIINPGHWTEDMRDVALEPADLNNRNML 120
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
VVDVGGGTGFTTLGI+KHVD KNVTILDQSPHQLAKAK K+PLKEC+I+EGDAEDLPFPT
Sbjct: 121 VVDVGGGTGFTTLGIIKHVDPKNVTILDQSPHQLAKAKAKKPLKECRIIEGDAEDLPFPT 180
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPK
Sbjct: 181 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPK 240
Query: 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAED 293
EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK ED
Sbjct: 241 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKVED 300
Query: 294 LSKPVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
+ KPV+P V L RF+LGALA+TY+VLVPIYMW+KD+I PKG P+
Sbjct: 301 VQKPVHPLVFLYRFLLGALASTYYVLVPIYMWIKDKIFPKGMPL 344
|
Not yet known, one of the major proteins of the inner membrane of the chloroplast envelope. Spinacia oleracea (taxid: 3562) |
| >sp|C3MCY6|UBIE_RHISN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rhizobium sp. (strain NGR234) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGD 165
N V+DV GGTG IV+ K + T+LD + LA +A++K L + VE +
Sbjct: 71 NYRVLDVAGGTGDIAFRIVEASGRKAHATVLDINGSMLAVGAERARKKGLLGNLEFVEAN 130
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
AEDLPF + D Y A I P + ++EAYRVLK GG+ ++ L F
Sbjct: 131 AEDLPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFY 190
Query: 226 DVW 228
D W
Sbjct: 191 DAW 193
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rhizobium sp. (strain NGR234) (taxid: 394) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A6UFF7|UBIE_SINMW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Sinorhizobium medicae (strain WSM419) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAED 168
V+DV GGTG IV+ K T+LD + L+ +A++K + VE +AED
Sbjct: 74 VLDVAGGTGDIAFRIVERSGRKAQATVLDINGSMLSVGAERARKKGIEANLEFVEANAED 133
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
LPF + D Y A I P + +REAYRVLK GG+ ++ L F D W
Sbjct: 134 LPFAANSFDAYTIAFGIRNVPRIEVALREAYRVLKRGGRLLVLEFSEVEMPLLDRFYDAW 193
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Sinorhizobium medicae (strain WSM419) (taxid: 366394) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rhizobium meliloti (strain 1021) GN=ubiE PE=3 SV=2 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECKIVEGDAED 168
V+DV GGTG IV+ K + T+LD + L+ +A++K VE +AED
Sbjct: 74 VLDVAGGTGDIAFRIVERSGRKAHATVLDINGSMLSVGAERARKKGIEANLDFVEANAED 133
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
LPF + D Y A I P + ++EAYRVLK GG+ ++ L F D W
Sbjct: 134 LPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFYDAW 193
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8CSH9|UBIE_STAES Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLPFP 172
+DV GT T+ + + V +K VT LD S + L KQK L+ ++V GDA +LPF
Sbjct: 54 LDVCCGTADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLENIQLVHGDAMNLPFD 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-----SRYFAD 226
+ D YV+ G + PD ++E +RVLK GG + PT L S YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK 247
V +F K +E EW Q++ F
Sbjct: 173 VMPIFGKMFAKSKEEYEWLQQSTFN 197
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q5HP74|UBIE_STAEQ Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 115 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLPFP 172
+DV GT T+ + + V +K VT LD S + L KQK L+ ++V GDA +LPF
Sbjct: 54 LDVCCGTADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLENIQLVHGDAMNLPFD 113
Query: 173 TDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-----SRYFAD 226
+ D YV+ G + PD ++E +RVLK GG + PT L S YF
Sbjct: 114 DNSFD-YVTIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYFKF 172
Query: 227 VW----MLFPKEEEYIEWFQKAGFK 247
V +F K +E EW Q++ F
Sbjct: 173 VMPIFGKMFAKSKEEYEWLQQSTFN 197
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q1RJY5|UBIE_RICBR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia bellii (strain RML369-C) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK----NVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K + ++T+ D + L +AK+K + K
Sbjct: 56 NLNSNILDVASGSGDIALKLAKKAKDRGSNISLTLSDINEEMLRQAKKKSIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG----------KACI 210
AE+LPFP + D Y A I PD + ++EAYRVLK G K +
Sbjct: 116 FTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESL 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
+ Y + + Y + LFP ++E+ ++AGF+++ K +
Sbjct: 176 LQDFYKFYSFNVIPKIGQIITGNKEAYDYLVESIDLFPSQDEFRIMIKEAGFEEINYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A8GXR2|UBIE_RICB8 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia bellii (strain OSU 85-389) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK----NVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K + ++T+ D + L +AK+K + K
Sbjct: 56 NLNSNILDVASGSGDIALKLAKKAKDRGSNISLTLSDINEEMLRQAKKKSIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG----------KACI 210
AE+LPFP + D Y A I PD + ++EAYRVLK G K +
Sbjct: 116 FTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESL 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
+ Y + + Y + LFP ++E+ ++AGF+++ K +
Sbjct: 176 LQDFYKFYSFNVIPKIGKIITGNKEAYDYLVESIDLFPSQDEFRIMIKEAGFEEINYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rickettsia bellii (strain OSU 85-389) (taxid: 391896) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A9ILA7|UBIE_BART1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 37/175 (21%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE------PLKECKIVEGDA 166
V+DV GGTG I+K K + T+LD + L+ KQ+ PL VE +A
Sbjct: 76 VLDVAGGTGDIAFRILKASRQKAHATVLDINGSMLSVGKQRAQKNGLAPL--IDFVEANA 133
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACIIGPVYPTFWLSRYFA 225
E LPF D Y A I P + +REA+RVLK GG+ C+ WL + +
Sbjct: 134 EHLPFEDQSFDAYTIAFGIRNVPHIDQALREAFRVLKPGGRFLCLEFSNVEMPWLDKIY- 192
Query: 226 DVWML--------------------------FPKEEEYIEWFQKAGFKDVQLKRI 254
D+W FPK+ ++ ++AGF V + +
Sbjct: 193 DLWSFHAIPKLGQFIANDGDAYRYLVESIRKFPKQNDFAHMIKQAGFSRVSYRNL 247
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Bartonella tribocorum (strain CIP 105476 / IBS 506) (taxid: 382640) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A8F2G9|UBIE_RICM5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia massiliae (strain Mtu5) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECK 160
N N ++DV G+G L + K V+ ++T+ D + L +AK+K + K
Sbjct: 56 NLNSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLK 115
Query: 161 IVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK-LGGKACI--------- 210
AE+LPFP D D Y A I PD + ++EA RVLK +G C+
Sbjct: 116 FTVASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGY 175
Query: 211 IGPVYPTFWLS----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
I Y + + Y + LFP ++E+ + AGF++V K +
Sbjct: 176 IKDFYKFYSFNIIPSIGQMIVGNKEAYEYLVESIELFPSQDEFRIMIKDAGFEEVGYKNL 235
Query: 255 G 255
Sbjct: 236 S 236
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rickettsia massiliae (strain Mtu5) (taxid: 416276) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| 255559875 | 342 | chloroplast inner envelope protein, puta | 0.997 | 0.982 | 0.874 | 1e-168 | |
| 219842168 | 340 | 2-methyl-6-phytylbenzoquinone methyltran | 0.997 | 0.988 | 0.865 | 1e-168 | |
| 224062301 | 340 | predicted protein [Populus trichocarpa] | 0.994 | 0.985 | 0.862 | 1e-165 | |
| 224085545 | 340 | predicted protein [Populus trichocarpa] | 0.997 | 0.988 | 0.859 | 1e-165 | |
| 358249098 | 342 | uncharacterized protein LOC100783986 [Gl | 0.994 | 0.979 | 0.843 | 1e-161 | |
| 356536451 | 342 | PREDICTED: 37 kDa inner envelope membran | 0.994 | 0.979 | 0.840 | 1e-160 | |
| 345114364 | 351 | 2-methyl-6-phytylbenzoquinone methyltran | 0.997 | 0.957 | 0.829 | 1e-160 | |
| 219842172 | 341 | 2-methyl-6-geranylgeranylbenzoquinone me | 0.994 | 0.982 | 0.845 | 1e-159 | |
| 345114370 | 351 | 2-methyl-6-phytylbenzoquinone methyltran | 0.997 | 0.957 | 0.829 | 1e-159 | |
| 345114368 | 351 | 2-methyl-6-phytylbenzoquinone methyltran | 0.997 | 0.957 | 0.826 | 1e-159 |
| >gi|255559875|ref|XP_002520956.1| chloroplast inner envelope protein, putative [Ricinus communis] gi|223539793|gb|EEF41373.1| chloroplast inner envelope protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 300/343 (87%), Positives = 318/343 (92%), Gaps = 7/343 (2%)
Query: 1 MASSMLNGAETFTLIR--GMTPKGSSFLASDFHGKHIPKLSLIAKPRTVQSI----KCSL 54
MASSMLNGAE TL+R KG SF SDF+GKH P+++L + R +++ KCSL
Sbjct: 1 MASSMLNGAENLTLMRIKSTNHKGLSFSGSDFNGKHFPRVNLTSSSRILKTTTIAPKCSL 60
Query: 55 SATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLV 114
SA SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLS+RNMLV
Sbjct: 61 SA-SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSDRNMLV 119
Query: 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174
VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPFPTD
Sbjct: 120 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTD 179
Query: 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234
YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPKE
Sbjct: 180 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKE 239
Query: 235 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDL 294
EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK ED+
Sbjct: 240 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDV 299
Query: 295 SKPVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
SKPVNPFV LRF+LGA+AATY+VLVPIYMWLKDQIVPKG+PI
Sbjct: 300 SKPVNPFVFFLRFILGAMAATYYVLVPIYMWLKDQIVPKGRPI 342
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219842168|dbj|BAH10641.1| 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/341 (86%), Positives = 319/341 (93%), Gaps = 5/341 (1%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPRTVQSI----KCSLSA 56
MAS MLNGAE FTL+ G+TPKG FL SDFHG H P+++LI+ R ++ KC+LSA
Sbjct: 1 MASLMLNGAENFTLMSGITPKGLGFLGSDFHGNHFPRVNLISSSRISRTRTVMPKCNLSA 60
Query: 57 TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVD 116
SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADL+NRN+LVVD
Sbjct: 61 -SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNNRNLLVVD 119
Query: 117 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176
VGGGTGFTTLGIVKHVDA+NVTILDQSPHQLAKAKQKEPLK+CKI+EGDAEDLPFPTDYA
Sbjct: 120 VGGGTGFTTLGIVKHVDAQNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFPTDYA 179
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236
DRYVSAGSIEYWPDPQRGI+EAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPKEEE
Sbjct: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKEEE 239
Query: 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDLSK 296
YIEWF+KAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL+LGPK ED++K
Sbjct: 240 YIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLKLGPKEEDIAK 299
Query: 297 PVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
PVNPFV LLRF+LG LAA Y+VLVPIYMWLKDQIVPKG+PI
Sbjct: 300 PVNPFVFLLRFILGGLAAAYYVLVPIYMWLKDQIVPKGRPI 340
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224062301|ref|XP_002300813.1| predicted protein [Populus trichocarpa] gi|222842539|gb|EEE80086.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/342 (86%), Positives = 316/342 (92%), Gaps = 7/342 (2%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIA-----KPRTVQSIKCSLS 55
MASSMLNGAE TLIRG+TPKG F SD G+H K++ +A K RT+ + CSLS
Sbjct: 1 MASSMLNGAENLTLIRGITPKGLGFGGSDLQGRHFSKVNAVASTRISKARTLTPM-CSLS 59
Query: 56 ATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVV 115
A SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPADLSNRNMLVV
Sbjct: 60 A-SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLSNRNMLVV 118
Query: 116 DVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175
DVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKI+EGDAEDLPF TDY
Sbjct: 119 DVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFRTDY 178
Query: 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235
ADRYVSAGSIEYWPDPQRGI+EAYRVLKLGGKAC+IGPVYPTFWLSR+FAD WMLFPKEE
Sbjct: 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADAWMLFPKEE 238
Query: 236 EYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDLS 295
EYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAED++
Sbjct: 239 EYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVT 298
Query: 296 KPVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
+PV PFV L+R +LGA+AATY+VLVPIYMWLKDQIVPKG+PI
Sbjct: 299 EPVKPFVFLMRLILGAMAATYYVLVPIYMWLKDQIVPKGRPI 340
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085545|ref|XP_002307615.1| predicted protein [Populus trichocarpa] gi|222857064|gb|EEE94611.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 293/341 (85%), Positives = 313/341 (91%), Gaps = 5/341 (1%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPRTVQSI----KCSLSA 56
M SS+ NGAE LIRG+TPKG FL SD G+H K+SLI+ R ++ KCSLSA
Sbjct: 1 MTSSVFNGAENLALIRGITPKGLGFLGSDLQGRHFSKVSLISSTRISKARTLTPKCSLSA 60
Query: 57 TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVD 116
RPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPADLS+RN +VVD
Sbjct: 61 -PRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLSDRNTIVVD 119
Query: 117 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176
VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKIVEGDAEDLPFPTDYA
Sbjct: 120 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIVEGDAEDLPFPTDYA 179
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236
DRYVSAGSIEYWPDPQRGI+EAYRVLKL GKAC+IGPV+PTFWLSR+FADVWMLFPKEEE
Sbjct: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKLEGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239
Query: 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDLSK 296
YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAED+SK
Sbjct: 240 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVSK 299
Query: 297 PVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
P NPFV LRF+LGA+AATY+VLVPIYMWLKDQIVPKG+PI
Sbjct: 300 PANPFVFFLRFILGAMAATYYVLVPIYMWLKDQIVPKGRPI 340
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358249098|ref|NP_001240248.1| uncharacterized protein LOC100783986 [Glycine max] gi|255641609|gb|ACU21077.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 290/344 (84%), Positives = 309/344 (89%), Gaps = 9/344 (2%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKP-------RTVQSIKCS 53
M S ML+G E TL R +T G F SD HGK+ P++S A R++ KCS
Sbjct: 1 MGSVMLSGTEKLTL-RTLTGNGLGFTGSDLHGKNFPRVSFAATTSAKVPNFRSIVVPKCS 59
Query: 54 LSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML 113
+SA SRP+SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADL++RNM+
Sbjct: 60 VSA-SRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNDRNMI 118
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPF T
Sbjct: 119 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFRT 178
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
DYADRYVSAGSIEYWPDPQRGI+EAYRVLKLGGKAC+IGPVYPTFWLSR+FADVWMLFPK
Sbjct: 179 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPK 238
Query: 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAED 293
EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK ED
Sbjct: 239 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEED 298
Query: 294 LSKPVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
+ KPVNPFV LRFVLGALAAT+FVLVPIYMWLKDQ+VPKGQPI
Sbjct: 299 VEKPVNPFVFALRFVLGALAATWFVLVPIYMWLKDQVVPKGQPI 342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536451|ref|XP_003536751.1| PREDICTED: 37 kDa inner envelope membrane protein, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 289/344 (84%), Positives = 308/344 (89%), Gaps = 9/344 (2%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKP-------RTVQSIKCS 53
MAS ML+G E TL R +T G F SD HGK+ P++S +A R++ KCS
Sbjct: 1 MASVMLSGTEKLTL-RTLTGNGLGFTGSDLHGKNFPRVSFVATTSAKVPNFRSLVVPKCS 59
Query: 54 LSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML 113
+SA SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADL++RNM+
Sbjct: 60 VSA-SRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNDRNMI 118
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPF T
Sbjct: 119 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFRT 178
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
DYADRYVSAGSIEYWPDPQRGI+EAYRVLKLG KAC+IGPVYPTFWLSR+FADVWMLFPK
Sbjct: 179 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKLGAKACLIGPVYPTFWLSRFFADVWMLFPK 238
Query: 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAED 293
EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK ED
Sbjct: 239 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEED 298
Query: 294 LSKPVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
+ K VNPFV LRFVLGALAAT+FVLVPIYMWLKDQ+VPKGQPI
Sbjct: 299 VEKSVNPFVFALRFVLGALAATWFVLVPIYMWLKDQVVPKGQPI 342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345114364|gb|AEN74936.1| 2-methyl-6-phytylbenzoquinone methyltranferase 1 [Arachis hypogaea] gi|345114372|gb|AEN74940.1| 2-methyl-6-phytylbenzoquinone methyltranferase 1 [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 292/352 (82%), Positives = 307/352 (87%), Gaps = 16/352 (4%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAK-------------PRTV 47
MASSM +G E+ TL TP G F AS+FH K I S R V
Sbjct: 1 MASSMFSGTESLTLFSSKTPNGLCFNASNFHSKRIGFNSSTTNFNFSNKARVRHNSNRIV 60
Query: 48 QSI--KCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPA 105
++I KCSLSA SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPA
Sbjct: 61 RTIVPKCSLSA-SRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPA 119
Query: 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD 165
DLS+RNM+VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKI+EGD
Sbjct: 120 DLSDRNMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGD 179
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
AEDLPF TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FA
Sbjct: 180 AEDLPFRTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACVIGPVYPTFWLSRFFA 239
Query: 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 285
DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL
Sbjct: 240 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 299
Query: 286 QLGPKAEDLSKPVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
QLGPK ED+ KPVN FV L RF+LGALAAT+FVLVPIYMWLKDQIVPKGQPI
Sbjct: 300 QLGPKEEDVEKPVNTFVFLYRFLLGALAATWFVLVPIYMWLKDQIVPKGQPI 351
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219842172|dbj|BAH10643.1| 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 290/343 (84%), Positives = 318/343 (92%), Gaps = 8/343 (2%)
Query: 1 MASSMLNGAETFTLIRGMTPK--GSSFLASDFHGKHIPKLSL----IAKPRTVQSIKCSL 54
MASSML+GAE TL++G++PK G F SDFHG H P +++ I + RT+ KCSL
Sbjct: 1 MASSMLSGAENLTLMKGISPKVKGLGFSRSDFHGNHFPGVTITCSRIFRTRTMMP-KCSL 59
Query: 55 SATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLV 114
SA SRPASQP+FIQHKKEAFWFYRFLS+VYDH+INPGHWTEDMRDDALEPADLS+RNM+V
Sbjct: 60 SA-SRPASQPKFIQHKKEAFWFYRFLSVVYDHIINPGHWTEDMRDDALEPADLSDRNMVV 118
Query: 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174
VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPFPTD
Sbjct: 119 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTD 178
Query: 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234
YADRYVSAGSIEYWPDPQRGI+EAYRVLK GGKAC+IGPV+PTFWLSR+FADVWMLFPKE
Sbjct: 179 YADRYVSAGSIEYWPDPQRGIKEAYRVLKHGGKACLIGPVHPTFWLSRFFADVWMLFPKE 238
Query: 235 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDL 294
EEYIEWF+KAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPA GDSPLQLGPK ED+
Sbjct: 239 EEYIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPAYGDSPLQLGPKQEDV 298
Query: 295 SKPVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
+KPVNPFV LLRF+LGA+AATY+VLVPIYMWLKDQIVP+G+PI
Sbjct: 299 AKPVNPFVFLLRFILGAMAATYYVLVPIYMWLKDQIVPEGRPI 341
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345114370|gb|AEN74939.1| 2-methyl-6-phytylbenzoquinone methyltranferase [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 292/352 (82%), Positives = 306/352 (86%), Gaps = 16/352 (4%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAK-------------PRTV 47
MASSM +G E+ TL TP G F AS FH K I S R V
Sbjct: 1 MASSMFSGTESLTLFSSKTPNGLCFNASTFHSKRIGFNSSTTNFNFSNKARVRHNSNRIV 60
Query: 48 QSI--KCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPA 105
++I KCSLSA SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPA
Sbjct: 61 RTIVPKCSLSA-SRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPA 119
Query: 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD 165
DLS+RNM+VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKI+EGD
Sbjct: 120 DLSDRNMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGD 179
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
AEDLPF TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FA
Sbjct: 180 AEDLPFRTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACVIGPVYPTFWLSRFFA 239
Query: 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 285
DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL
Sbjct: 240 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 299
Query: 286 QLGPKAEDLSKPVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
QLGPK ED+ KPVN FV L RF+LGALAAT+FVLVPIYMWLKDQIVPKGQPI
Sbjct: 300 QLGPKEEDVEKPVNTFVFLYRFLLGALAATWFVLVPIYMWLKDQIVPKGQPI 351
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345114368|gb|AEN74938.1| 2-methyl-6-phytylbenzoquinone methyltranferase 3 [Arachis hypogaea] gi|345114376|gb|AEN74942.1| 2-methyl-6-phytylbenzoquinone methyltranferase [Arachis duranensis] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/352 (82%), Positives = 306/352 (86%), Gaps = 16/352 (4%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAK-------------PRTV 47
MASSM +G E+ TL TP G F AS+FH K I S R V
Sbjct: 1 MASSMFSGTESLTLFSSKTPNGLCFNASNFHSKRIGFNSSTTNFNFSNKARVRHNSNRIV 60
Query: 48 QSI--KCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPA 105
++I KCSLSA SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPA
Sbjct: 61 RTIVPKCSLSA-SRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPA 119
Query: 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD 165
DLS+RNM+VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKI+EGD
Sbjct: 120 DLSDRNMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGD 179
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
AEDLPF TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC+IGPVYPTFWLSR+FA
Sbjct: 180 AEDLPFRTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACVIGPVYPTFWLSRFFA 239
Query: 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 285
DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL
Sbjct: 240 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPL 299
Query: 286 QLGPKAEDLSKPVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
QLGPK ED+ KPV PFV L R +LGALAAT+FVLVPIYMWLKDQIVPKGQPI
Sbjct: 300 QLGPKEEDVEKPVKPFVFLYRLILGALAATWFVLVPIYMWLKDQIVPKGQPI 351
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| TAIR|locus:2087393 | 338 | APG1 "ALBINO OR PALE GREEN MUT | 0.979 | 0.976 | 0.768 | 1.1e-140 | |
| TIGR_CMR|NSE_0950 | 230 | NSE_0950 "ubiquinone/menaquino | 0.293 | 0.430 | 0.304 | 3.8e-05 | |
| UNIPROTKB|E2RF28 | 327 | COQ5 "Uncharacterized protein" | 0.219 | 0.226 | 0.367 | 0.00023 | |
| UNIPROTKB|F1RJK0 | 329 | COQ5 "Uncharacterized protein" | 0.145 | 0.148 | 0.46 | 0.00031 | |
| UNIPROTKB|P30866 | 207 | yafE "predicted S-adenosylmeth | 0.272 | 0.444 | 0.313 | 0.00038 | |
| TIGR_CMR|DET_1591 | 221 | DET_1591 "methyltransferase, U | 0.391 | 0.597 | 0.286 | 0.00047 | |
| RGD|1310857 | 327 | Coq5 "coenzyme Q5 homolog, met | 0.145 | 0.149 | 0.46 | 0.00049 | |
| UNIPROTKB|Q5LVS6 | 208 | SPO0620 "Uncharacterized prote | 0.528 | 0.855 | 0.246 | 0.0005 | |
| TIGR_CMR|SPO_0620 | 208 | SPO_0620 "conserved hypothetic | 0.528 | 0.855 | 0.246 | 0.0005 | |
| UNIPROTKB|Q81RE2 | 209 | BA_2106 "Uncharacterized prote | 0.219 | 0.354 | 0.315 | 0.00051 |
| TAIR|locus:2087393 APG1 "ALBINO OR PALE GREEN MUTANT 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 265/345 (76%), Positives = 290/345 (84%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIA-----KPRTVQSIKCSLS 55
MAS MLNGA TF PKG S+ H + IP+ +L++ PR + +CS S
Sbjct: 1 MASLMLNGAITF-------PKGLGSPGSNLHARSIPRPTLLSVTRTSTPRLSVATRCSSS 53
Query: 56 A--TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML 113
+ +SRP++QPRFIQHKKEA+WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLS+ +M
Sbjct: 54 SVSSSRPSAQPRFIQHKKEAYWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSHPDMR 113
Query: 114 VVDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
VVDV IVK V AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT
Sbjct: 114 VVDVGGGTGFTTLGIVKTVKAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
DYADRYVSAGSIEYWPDPQRGIREAYRVLK+GGKAC+IGPVYPTFWLSR+F+DVWMLFPK
Sbjct: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKIGGKACLIGPVYPTFWLSRFFSDVWMLFPK 233
Query: 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAED 293
EEEYIEWF+ AGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK ED
Sbjct: 234 EEEYIEWFKNAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEED 293
Query: 294 LSKPVN-PFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
+ KPVN PF L RF+LG LAA +FVL+PIYMW+KDQIVPK QPI
Sbjct: 294 VEKPVNNPFSFLGRFLLGTLAAAWFVLIPIYMWIKDQIVPKDQPI 338
|
|
| TIGR_CMR|NSE_0950 NSE_0950 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 32/105 (30%), Positives = 52/105 (49%)
Query: 111 NMLVVDVXXXXXXXXXXIVK-HVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDA 166
N V+D+ ++K H+ + + + D++ L AK + E K+V DA
Sbjct: 45 NQRVLDMAAGTGDITLRLLKTHIPVE-IILCDKNHEMLEIAKDRLLDEGYVNLKVVSADA 103
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI 210
LPF D YV A + + + +R + EAYRVLK GG+ +C+
Sbjct: 104 AQLPFEDCSFDHYVVAFGVRNFSNIERSLTEAYRVLKPGGRFSCL 148
|
|
| UNIPROTKB|E2RF28 COQ5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 95 (38.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 137 VTILDQSPHQLAKAKQKEPLKECKI----VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ 192
V + D + L KQK + K V GDAE+LPF D D Y A I
Sbjct: 167 VVVCDINKEMLKIGKQKARAQGYKAGLAWVLGDAEELPFDDDKFDVYTIAFGIRNVTHID 226
Query: 193 RGIREAYRVLKLGGK-ACI 210
+ ++EA+RVLK GG+ C+
Sbjct: 227 QALQEAHRVLKPGGRFLCL 245
|
|
| UNIPROTKB|F1RJK0 COQ5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 93 (37.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI 210
V GDAE+LPF D D Y A I R ++EA+RVLK GG+ C+
Sbjct: 198 VLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCL 247
|
|
| UNIPROTKB|P30866 yafE "predicted S-adenosylmethionine-dependent methyltransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 0.00038, P = 0.00038
Identities = 32/102 (31%), Positives = 49/102 (48%)
Query: 134 AKNVTIL---DQSPHQL---AKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187
A+NV+ + D S H L A+A + LK +G AE LPF + D +S S +
Sbjct: 14 AQNVSAVVAYDLSAHMLDVVAQAAEARQLKNITTRQGYAESLPFADNAFDIVISRYSAHH 73
Query: 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWM 229
W D +RE R+LK GG+ ++ + P D+W+
Sbjct: 74 WHDVGAALREVNRILKPGGRLIVMDVMSP----GHPVRDIWL 111
|
|
| TIGR_CMR|DET_1591 DET_1591 "methyltransferase, UbiE/COQ5 family" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 0.00047, P = 0.00047
Identities = 41/143 (28%), Positives = 66/143 (46%)
Query: 71 KEAFWFYRFLSIVYDHV----INPGHWTEDMRDDALEPADLSNRNMLVVDVXXXXXXXXX 126
K +W R+ S VYD + P E R ++ A++ R+ ++D+
Sbjct: 13 KTDYW-KRY-SKVYDFLTRLLFTPFGGEERFRRKFVDEANIQPRDN-IIDMCCGTGATTR 69
Query: 127 XIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR-YVSAGSI 185
+ + VT +D SP +A+AK+K + ++LPFP D+ +VS G
Sbjct: 70 LVAGKLKDGQVTGVDLSPDMMARAKEKVTGLPAVFQQASGDNLPFPEGTFDKAFVSYGLH 129
Query: 186 EYWPDPQR--GIREAYRVLKLGG 206
E P P R I++ Y+VLK GG
Sbjct: 130 EM-PTPIRHEAIKQIYKVLKPGG 151
|
|
| RGD|1310857 Coq5 "coenzyme Q5 homolog, methyltransferase (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 93 (37.8 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACI 210
V GDAE+LPF D D Y A I R ++EA+RVLK GG+ C+
Sbjct: 196 VLGDAEELPFDDDRFDVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCL 245
|
|
| UNIPROTKB|Q5LVS6 SPO0620 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 0.00050, P = 0.00050
Identities = 47/191 (24%), Positives = 78/191 (40%)
Query: 62 SQPRFI--QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVXX 119
S+P FI Q +K W ++ V P + D AL DL++ + L+ D+
Sbjct: 2 SKPEFIARQGRKPTGWLGHIVARVMARETRPEN------DRALSFLDLADGDSLI-DIGC 54
Query: 120 XXXXXXXXIVKHVDAKNVTILDQSPHQL--AKAKQKEPLKECKIVE--GDAEDLPFPTDY 175
+ V +D S L A+A+ ++ + + ++ D LPFP
Sbjct: 55 GHGETLFQADRIVRLSGSVGVDFSEVMLKRARARNRDAVWDTRMAFHCADTAALPFPDKR 114
Query: 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235
+ +S +I +WP+P + EA+RVL+ GG+ F D FP +
Sbjct: 115 FGKALSVHTIYFWPNPAAHLAEAFRVLRRGGRFLFCYRSTADRRAVEEFPDTVYRFPSVQ 174
Query: 236 EYIEWFQKAGF 246
E E + GF
Sbjct: 175 EVEEKLKLVGF 185
|
|
| TIGR_CMR|SPO_0620 SPO_0620 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 0.00050, P = 0.00050
Identities = 47/191 (24%), Positives = 78/191 (40%)
Query: 62 SQPRFI--QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVXX 119
S+P FI Q +K W ++ V P + D AL DL++ + L+ D+
Sbjct: 2 SKPEFIARQGRKPTGWLGHIVARVMARETRPEN------DRALSFLDLADGDSLI-DIGC 54
Query: 120 XXXXXXXXIVKHVDAKNVTILDQSPHQL--AKAKQKEPLKECKIVE--GDAEDLPFPTDY 175
+ V +D S L A+A+ ++ + + ++ D LPFP
Sbjct: 55 GHGETLFQADRIVRLSGSVGVDFSEVMLKRARARNRDAVWDTRMAFHCADTAALPFPDKR 114
Query: 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235
+ +S +I +WP+P + EA+RVL+ GG+ F D FP +
Sbjct: 115 FGKALSVHTIYFWPNPAAHLAEAFRVLRRGGRFLFCYRSTADRRAVEEFPDTVYRFPSVQ 174
Query: 236 EYIEWFQKAGF 246
E E + GF
Sbjct: 175 EVEEKLKLVGF 185
|
|
| UNIPROTKB|Q81RE2 BA_2106 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 0.00051, P = 0.00051
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 140 LDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAY 199
+D S + K K++ + ++GD LPF + + ++ S+E+ +P R + E
Sbjct: 48 VDLSEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIK 107
Query: 200 RVLKLGGKACI--IGP 213
RVLK G ACI +GP
Sbjct: 108 RVLKSDGYACIAILGP 123
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P23525 | IN37_SPIOL | No assigned EC number | 0.8023 | 1.0 | 0.9796 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 337 | |||
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 0.0 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 1e-24 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-22 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 5e-18 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 2e-17 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 2e-15 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 4e-15 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 4e-14 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-14 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 4e-12 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 6e-11 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 8e-11 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 2e-10 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 7e-10 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 2e-08 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 3e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-07 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 1e-06 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 3e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-06 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 9e-06 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyl | 8e-05 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 1e-04 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 6e-04 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 669 bits (1728), Expect = 0.0
Identities = 291/341 (85%), Positives = 311/341 (91%), Gaps = 5/341 (1%)
Query: 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPR----TVQSIKCSLSA 56
MASSMLNGAE LIRG+TPKG F SD HG+ PK L + R + +CS S+
Sbjct: 1 MASSMLNGAENLRLIRGITPKGLGFSGSDLHGRSFPKKLLSSSRRSPRLRTLAARCSSSS 60
Query: 57 TSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVD 116
SRPASQPRFIQHKKEAFWFYRFLSIVYDH+INPGHWTEDMRDDALEPADLS+RN+ VVD
Sbjct: 61 -SRPASQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVD 119
Query: 117 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176
VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI+EGDAEDLPFPTDYA
Sbjct: 120 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYA 179
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236
DRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKAC+IGPV+PTFWLSR+FADVWMLFPKEEE
Sbjct: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239
Query: 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDLSK 296
YIEWF KAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAED+SK
Sbjct: 240 YIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVSK 299
Query: 297 PVNPFVLLLRFVLGALAATYFVLVPIYMWLKDQIVPKGQPI 337
PVNPF LLRF+LG +AATY+VLVPIYMWLKDQIVPKGQPI
Sbjct: 300 PVNPFSFLLRFILGTIAATYYVLVPIYMWLKDQIVPKGQPI 340
|
Length = 340 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 1e-24
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 30/170 (17%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDA 166
V+DV GTG L + K V V LD S L A++K + ++ + V GDA
Sbjct: 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA 110
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
E+LPFP + D + + D + ++E YRVLK GG+ ++ P + R
Sbjct: 111 ENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI 170
Query: 227 VWML---------------------------FPKEEEYIEWFQKAGFKDV 249
++ FP +EE + +KAGF++V
Sbjct: 171 LYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEV 220
|
Length = 238 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 3e-22
Identities = 44/96 (45%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174
+DVG GTG + + A VT +D SP LA A+++ P K V GDAEDLPFP +
Sbjct: 1 LDVGCGTGLLAEALARRGGA-RVTGVDLSPEMLALARKRAP---RKFVVGDAEDLPFPDE 56
Query: 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI 210
D VS+ + + PDP+R +RE RVLK GGK I
Sbjct: 57 SFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 5e-18
Identities = 52/204 (25%), Positives = 75/204 (36%), Gaps = 46/204 (22%)
Query: 78 RFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKN 136
LS + W V+DV GTG + + K D
Sbjct: 17 DLLSFGLHRL-----WRRRAVKLIGVFKGQK-----VLDVACGTGDLAIELAKSAPDRGK 66
Query: 137 VTILDQSPHQLAKAKQKEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEY----WPDP 191
VT +D S L AK+K L + ++ DAE LPF D A +I + D
Sbjct: 67 VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFE----DNSFDAVTIAFGLRNVTDI 122
Query: 192 QRGIREAYRVLKLGGKACI----------IGPVY--------PT---FWLSRYFADVWM- 229
Q+ +RE YRVLK GG+ I + Y P+ A ++
Sbjct: 123 QKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLP 182
Query: 230 ----LFPKEEEYIEWFQKAGFKDV 249
FP +EE ++AGF++V
Sbjct: 183 ESIRAFPSQEELAAMLKEAGFEEV 206
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 2e-17
Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 41/177 (23%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK----EPLKECKIVEGDAED 168
V+D+ GTG + + K V V LD S LA ++K + V+GDAE
Sbjct: 55 VLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA 114
Query: 169 LPFPTDYADRYVSAGSIEY----WPDPQRGIREAYRVLKLGGKACI----------IGPV 214
LPFP + D +I + PD + +RE YRVLK GG+ I +
Sbjct: 115 LPFPDNSFDAV----TIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKA 170
Query: 215 YPTFWLS-----------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
Y F+L Y A+ FP +EE ++AGF+ V+ + +
Sbjct: 171 Y-DFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNL 226
|
Length = 239 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-15
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 30/166 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL 169
+DV GGTG T G+ + V LD + + L + ++K E + ++G+AE+L
Sbjct: 51 FLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEEL 110
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL--------- 220
PF D D + + +PD + ++EA+RVLK GG+ + P L
Sbjct: 111 PFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYF 170
Query: 221 -----------------SRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
+Y + FP ++ F+KAGFK V
Sbjct: 171 KYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSV 216
|
Length = 233 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-15
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 30/159 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQ--KEPLKECKIVEGDAEDLP 170
V+DVG G G + + V V +D+S LA AK+ + V GDA+ LP
Sbjct: 23 VLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82
Query: 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKA---------CIIGPVYP----- 216
FP D S +++ DP R + E RVL+ GG+ +
Sbjct: 83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRK 142
Query: 217 --TFWLSRYFADVWM---LFPKEEEYIEWFQKAGFKDVQ 250
FW FAD W+ L F++AG D++
Sbjct: 143 ILNFWSDH-FADPWLGRRLPG-------LFREAGLTDIE 173
|
Length = 241 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-14
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 13/151 (8%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAK---QKEPLKECKIVE 163
+ V+D+G GTG+ T + + + V +D S + KAK +K + + ++
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 164 GDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW- 219
GD E+LP + D +S + + PDP + + E RVLK GG + PV +
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELP 120
Query: 220 -----LSRYFADVWMLFPKEEEYIEWFQKAG 245
L R +A V +++ + ++AG
Sbjct: 121 ALLEDLERLYAGVLEGAIGKKKLLTILREAG 151
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-14
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE---CKIVEGDAEDLP 170
V+D+G GTG L + A+ VT +D SP L A++ ++++GDAE+LP
Sbjct: 2 VLDLGCGTGALALALASGPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 171 FPTD-YADRYVSAGSIEYWP-DPQRGIREAYRVLKLGGKACII 211
D D +S + + D R + EA R+LK GG +
Sbjct: 61 PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-12
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK------EPLKECKIVEGDAED 168
+D+G GTG +++ + T +D SP L A ++ ++ DA D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 169 LPFPT-DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
L + D V++ + + DP+ +R R+LK GG
Sbjct: 61 LDPGSFDVV---VASNVLHHLADPRAVLRNLRRLLKPGGV 97
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-11
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 32/170 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL 169
+DV GT ++ + + V + +V LD S + L+ +QK L ++V G+A +L
Sbjct: 49 ALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL 108
Query: 170 PFPTDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGK-ACI----------------- 210
PF + D YV+ G + PD + +RE YRV+K GGK C+
Sbjct: 109 PFDDNSFD-YVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFY 167
Query: 211 ---IGPVYPTFWLSRYFADVWML-----FPKEEEYIEWFQKAGFKDVQLK 252
I P++ + Y W+ FP +E E FQ+AGFKDV++K
Sbjct: 168 FKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-11
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPF 171
++D+G GTG + +VT +D S L AK++ K K+ V DA DLPF
Sbjct: 1 ILDLGCGTGRVLRALA-RAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPF 59
Query: 172 PTDYADRYVSAG-SIEYWPDPQ--RGIREAYRVLKLGG 206
D + AG S++Y Q +REA R+L+ GG
Sbjct: 60 EEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (143), Expect = 2e-10
Identities = 39/182 (21%), Positives = 62/182 (34%), Gaps = 7/182 (3%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEP--ADLSNRNMLVVDVGGGTGFTTLGIVKHV 132
+ + + E++ D L L + V+D+G GTG L
Sbjct: 11 RILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGG 70
Query: 133 DAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAED--LPFPTDYADRYVSAGSIEY 187
V +D SP LA A+ + L V DA LPF + V + + +
Sbjct: 71 RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130
Query: 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247
P + +RE RVLK GG+ + + R A + P E +
Sbjct: 131 LLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGDILLELEALL 190
Query: 248 DV 249
+
Sbjct: 191 RL 192
|
Length = 257 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-10
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
V+D+G GTG+ T ++K D S LA+AK K + + + GDAE LP
Sbjct: 38 VLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLS-ENVQFICGDAEKLPLED 96
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSRYFADVWMLFP 232
D VS ++++ D + + E RVLK GG T L + F + +
Sbjct: 97 SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYL 156
Query: 233 KEEEYIEWFQKAGFKDVQLK 252
+E K F+ + L+
Sbjct: 157 SLDELKALL-KNSFELLTLE 175
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI-VEGDAEDLP 170
M ++D+G G G + + V + S QLA A+++ + + VE +D
Sbjct: 74 MTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR 132
Query: 171 FPTDYADRYVSAGSIEY-----WPDPQRGIREAYRVLKLGGKA---CIIGP--VYPTF-- 218
+ DR VS G E+ + D ++ Y +LK GG+ I GP + F
Sbjct: 133 DFEEPFDRIVSVGMFEHVGKENYDD---FFKKVYALLKPGGRMLLHSITGPDQEFRRFPD 189
Query: 219 WLSRY-FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263
++ +Y F + P E +E +AGF + ++ + P + R +R
Sbjct: 190 FIDKYIFPGGEL--PSISEILELASEAGFVVLDVESLRPHYARTLR 233
|
Length = 283 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 40/171 (23%), Positives = 61/171 (35%), Gaps = 30/171 (17%)
Query: 91 GHWTEDMRDDALEP-ADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
E L V+D+G GTG + + +VT +D SP +
Sbjct: 2 RRQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRERG--FDVTGVDPSPAAVLI 59
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRY---VSAGSIEYWPDPQRGIREAYRVLKLGG 206
D P P A +Y + +E+ PDP +++ +LK GG
Sbjct: 60 FSL--------------FDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGG 105
Query: 207 KACIIGPVYPTFWLSRYFADVWMLFPK--------EEEYIEWFQKAGFKDV 249
I P+ +R FA+ L P+ EE +KAGF+ V
Sbjct: 106 VLLISTPLAD--DDARLFANWHYLRPRNTHISFYSEESLKRLLEKAGFELV 154
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDA-EDL 169
V+D+G GTG + + + VT +D SP L A++ L V+GDA + L
Sbjct: 5 VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDAL 64
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
+ D G + + +LK GG+
Sbjct: 65 DLLEGF-DAVFIGGGGGDLLEL---LDALASLLKPGGR 98
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 137 VTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
V LD S QLA A ++ L K + +EGDA DLPF Y D + D
Sbjct: 101 VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD 160
Query: 191 PQRGIREAYRVLKLGGKACII 211
+ ++E YRVLK G + I+
Sbjct: 161 RLKAMQEMYRVLKPGSRVSIL 181
|
Length = 261 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 54/211 (25%), Positives = 77/211 (36%), Gaps = 65/211 (30%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTI-LDQSPHQLAKAKQ---KEPLKECKIVEGDAEDL 169
V+D+G G GF + V I +D +P LAKA+ K + G+ E L
Sbjct: 81 VLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL 140
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK---------------------- 207
P + D +S I PD +R +EA+RVLK GG+
Sbjct: 141 PVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAEL 200
Query: 208 --ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK-------- 257
C+ G + +EEEY+ +AGF D+ I PK
Sbjct: 201 YAGCVAGAL------------------QEEEYLAMLAEAGFVDI---TIQPKREYRIPDA 239
Query: 258 ------WYRGVRRH--GLIMGCSVTGVKPAS 280
W R G I+ +V KPA+
Sbjct: 240 REFLEDWGIAPGRQLDGYIVSATVEATKPAA 270
|
Length = 272 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIVEGDAE 167
V+D G G+G L + V ++ P A A+++ L ++V GDA
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61
Query: 168 DLP-FPTDYADRYVS----AGSIEYWPDPQ----RGIREAYRVLKLGGKACIIGP 213
+L P D + D + R + A R+LK GG +I P
Sbjct: 62 ELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 47/185 (25%), Positives = 70/185 (37%), Gaps = 22/185 (11%)
Query: 86 HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILD--QS 143
H INP + +R+ A DL + V+DVG G G L +VT +D +
Sbjct: 38 HKINP-LRLDYIREVARLRFDLPG--LRVLDVGCGGG--ILSEPLARLGASVTGIDASEK 92
Query: 144 PHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203
P ++AK E + EDL D +E+ PDP+ +R +++K
Sbjct: 93 PIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVK 152
Query: 204 LGG-------------KAC-IIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
GG IIG Y + + D + F K E I W A K +
Sbjct: 153 PGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHD-YRKFIKPAELIRWLLGANLKII 211
Query: 250 QLKRI 254
K +
Sbjct: 212 DRKGL 216
|
Length = 243 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 8e-05
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 140 LDQSPHQLAKAKQKEPLK-----EC-KIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR 193
LD S QLA A ++ LK +C + +EGDA DLPF D + D R
Sbjct: 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLR 62
Query: 194 GIREAYRVLKLGGKACII 211
++E YRVLK G + I+
Sbjct: 63 AMKEMYRVLKPGSRVSIL 80
|
Length = 160 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 58/219 (26%), Positives = 82/219 (37%), Gaps = 45/219 (20%)
Query: 96 DMRDDALE----PADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
M +++L P D R +VDVG G G ++ + + A NV + SP Q A+A
Sbjct: 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARAN 158
Query: 152 ---QKEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
+ L + DA + PF D S S E+ PD ++ ++E RV GG+
Sbjct: 159 ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGR 218
Query: 208 ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG-----PKWYRGV 262
I+ W R L P E QK L +I P W
Sbjct: 219 IIIVT------WCHR------DLEPGETSLKPDEQKL------LDKICAAYYLPAW---- 256
Query: 263 RRHGLIMGCSVTGVKPASGDSPLQLGPKAEDLSKPVNPF 301
CS + + LQ K ED S+ V PF
Sbjct: 257 --------CSTSDYVKLAESLGLQ-DIKTEDWSEHVAPF 286
|
Length = 340 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
V+D G G G + VT LD SP LA+A+QK+ + GD E LP T
Sbjct: 46 VLDAGCGPG--WMSRYWRERGSQVTALDLSPPMLAQARQKDAAD--HYLAGDIESLPLAT 101
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
D S ++++ + +RE YRV++ GG
Sbjct: 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGV 135
|
Length = 251 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.94 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.92 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.92 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.9 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.89 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.89 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.87 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.86 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.86 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.85 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.84 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.84 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.83 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.83 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.83 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.83 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.82 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.82 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.81 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.81 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.8 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.8 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.8 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.8 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.79 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.79 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.79 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.78 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.77 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.76 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.76 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.76 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.75 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.75 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.74 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.73 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.72 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.71 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.71 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.7 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.7 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.69 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.69 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.69 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.68 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.68 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.67 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.67 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.67 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.67 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.67 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.67 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.67 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.66 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.66 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.65 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.65 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.64 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.64 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.64 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.64 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.63 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.63 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.63 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.63 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.63 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.62 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.62 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.61 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.61 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.6 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.6 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.59 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.58 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.58 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.58 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.58 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.57 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.56 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.55 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.55 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.55 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.54 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.54 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.54 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.53 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.51 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.51 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.5 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.5 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.49 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.49 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.47 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.47 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.47 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.47 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.46 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.45 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.45 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.44 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.42 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.42 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.39 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.37 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.37 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.37 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.37 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.36 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.36 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.35 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.35 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.33 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.32 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.3 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.3 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.28 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.28 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.27 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.27 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.26 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.26 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.25 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.25 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.25 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.25 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.23 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.22 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.22 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.2 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.19 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.19 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.18 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.18 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.16 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.15 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.14 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.14 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.13 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.12 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.11 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.11 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.1 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.08 | |
| PLN02366 | 308 | spermidine synthase | 99.08 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.07 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.06 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.05 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.02 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.01 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.01 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.01 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.0 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.98 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.95 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.94 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.94 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.93 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.92 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.9 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.9 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.88 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.88 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.88 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.88 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.85 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.84 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.84 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.81 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.81 | |
| PLN02476 | 278 | O-methyltransferase | 98.81 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.79 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.78 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.76 | |
| PLN02823 | 336 | spermine synthase | 98.74 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.71 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.71 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.7 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.69 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.69 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.66 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.64 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.63 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.62 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.62 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.6 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.59 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.58 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.57 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.55 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.54 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.54 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.52 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.52 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.48 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.46 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.46 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.45 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.41 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.4 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.39 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.39 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.38 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.37 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.37 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.34 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.33 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.31 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.31 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.28 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.24 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.24 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.2 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.2 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.2 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.16 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.15 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.12 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.12 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.12 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.09 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.09 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.09 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.08 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.05 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.03 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.02 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.0 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.99 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.98 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.98 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.98 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.97 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.97 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.93 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.89 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.83 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.78 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.75 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.74 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.74 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.63 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.62 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.6 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.58 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.58 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.54 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.53 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.48 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.44 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.4 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.32 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.3 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.24 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.1 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.08 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.02 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.93 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.91 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.86 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.63 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.63 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.59 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.55 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.42 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.42 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.36 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.34 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.33 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.28 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.26 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.24 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.22 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.18 | |
| PHA01634 | 156 | hypothetical protein | 96.11 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.97 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.95 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 95.77 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.69 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.66 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.62 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.59 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.54 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.48 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.31 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.3 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.21 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.12 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.03 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 94.98 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.98 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 94.97 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.83 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 94.74 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 94.73 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.58 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 94.53 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.51 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.39 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.26 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.26 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 94.25 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.11 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 94.09 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.09 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.01 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.51 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 93.49 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.09 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.05 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 92.67 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.66 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 92.54 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.42 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 92.32 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 92.16 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 92.08 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 91.96 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.92 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 91.82 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 91.62 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.24 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 91.11 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.04 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 91.01 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 90.69 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.65 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 90.4 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 90.23 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 90.19 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 89.83 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 89.43 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 89.18 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 89.05 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 88.9 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 88.43 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 88.28 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 88.12 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 88.11 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 87.95 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.89 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.82 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.8 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 87.7 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 87.65 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 87.65 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 87.59 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 87.14 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 86.99 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 86.66 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 86.52 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 85.65 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 85.64 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 85.48 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 85.18 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 84.92 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 84.86 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 84.75 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 84.69 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 84.56 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 84.56 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 84.55 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 83.7 | |
| PLN02494 | 477 | adenosylhomocysteinase | 83.57 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 83.37 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 83.24 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 83.03 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 82.89 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 82.8 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.74 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 82.72 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 82.56 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 82.55 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.42 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 82.39 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 82.28 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 81.87 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 81.72 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 81.38 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 81.3 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 81.13 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 81.13 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 80.95 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 80.94 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 80.86 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 80.8 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 80.79 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 80.75 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 80.51 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 80.13 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 80.1 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 80.04 |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=372.32 Aligned_cols=336 Identities=86% Similarity=1.447 Sum_probs=302.6
Q ss_pred CcccccccccccceecccCCCCcccccccccCCcCCCccccCCCcce----eeeecccccCCCCCCchHHhhhhhhhHHH
Q 019684 1 MASSMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSLIAKPRTV----QSIKCSLSATSRPASQPRFIQHKKEAFWF 76 (337)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (337)
||++|++|++.++++.+..|.|++|+++++++.+++...+....... ....|+. ...++.+++++.|+..+.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~~~~~ 79 (340)
T PLN02490 1 MASSMLNGAENLRLIRGITPKGLGFSGSDLHGRSFPKKLLSSSRRSPRLRTLAARCSS-SSSRPASQPRFIQHKKEAFWF 79 (340)
T ss_pred CCccccccccccccccccCCcccCCCCCcccccccccccccccCcccccceecccccc-ccCCcccccchhhhhhcceeE
Confidence 89999999999999999999999999999999998866555444333 3344554 367899999999999999999
Q ss_pred hhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC
Q 019684 77 YRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 156 (337)
Q Consensus 77 y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 156 (337)
|+..+..|+..+.+.+|.+.++...++...+..++.+|||||||+|.++..+++..++.+|+++|+|+.|++.++++...
T Consensus 80 y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~ 159 (340)
T PLN02490 80 YRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 159 (340)
T ss_pred ccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc
Confidence 99999999998888888988888888776655577899999999999999998887778999999999999999988665
Q ss_pred CCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHH
Q 019684 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236 (337)
Q Consensus 157 ~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
.+++++.+|++++++++++||+|++..+++|+++++.++++++++|||||++++.++..+..+..+.+.+.+..+.+.++
T Consensus 160 ~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eE 239 (340)
T PLN02490 160 KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239 (340)
T ss_pred cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHH
Confidence 67899999999989888899999999999999999999999999999999999887665555555555566666778999
Q ss_pred HHHHHHhCCCcEEEEEEcCcccccccccccceeeeeeeeccCCCCCCCCccCchhhcccCCCCchhHHHHHHHHhhhhhh
Q 019684 237 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDLSKPVNPFVLLLRFVLGALAATY 316 (337)
Q Consensus 237 ~~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~kp~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (337)
+.++|+++||+.+++.++.+.|+++++.++.++.+.+.++||..+++++++|+++++..+..||+.|+.+|..|+.++++
T Consensus 240 l~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (340)
T PLN02490 240 YIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVSKPVNPFSFLLRFILGTIAATY 319 (340)
T ss_pred HHHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEeccccCCCccccCccccccccCcCchhhhHHHHhhhHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhhhhhcccCCCCCC
Q 019684 317 FVLVPIYMWLKDQIVPKGQPI 337 (337)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~ 337 (337)
+.|.|+|+|.+++|+||||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~ 340 (340)
T PLN02490 320 YVLVPIYMWLKDQIVPKGQPI 340 (340)
T ss_pred HhhhhHHHHHhcccccCCCCC
Confidence 999999999999999999997
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=193.43 Aligned_cols=179 Identities=30% Similarity=0.400 Sum_probs=139.9
Q ss_pred HHHhhhhhHhhhccc---CCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 019684 74 FWFYRFLSIVYDHVI---NPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150 (337)
Q Consensus 74 ~~~y~~~~~~y~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a 150 (337)
...|+..+..|+.+- .-+ ....+++......... +|.+|||||||||.++..+++..+.++|+|+|+|+.|++.+
T Consensus 14 ~~vF~~ia~~YD~~n~~~S~g-~~~~Wr~~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a 91 (238)
T COG2226 14 QKVFDKVAKKYDLMNDLMSFG-LHRLWRRALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA 91 (238)
T ss_pred HHHHHhhHHHHHhhcccccCc-chHHHHHHHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH
Confidence 345555666666543 211 2233444444444443 79999999999999999999998889999999999999999
Q ss_pred HhhCCCC---CeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch-hHh-----
Q 019684 151 KQKEPLK---ECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLS----- 221 (337)
Q Consensus 151 ~~~~~~~---~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~----- 221 (337)
+++.... +++|+++|++++||+|++||+|.+.+.|++++|++++|+|++|+|||||++++.+...+.. +..
T Consensus 92 ~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~ 171 (238)
T COG2226 92 REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL 171 (238)
T ss_pred HHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH
Confidence 9987652 3899999999999999999999999999999999999999999999999999987665432 111
Q ss_pred ---------------------hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 222 ---------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 222 ---------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.++......+++.+++.++++++||+.+..+.+
T Consensus 172 ~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 172 YYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEee
Confidence 112222334688999999999999998885554
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-25 Score=194.73 Aligned_cols=177 Identities=33% Similarity=0.511 Sum_probs=88.5
Q ss_pred HHHhhhhhHhhhccc---C---CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHH
Q 019684 74 FWFYRFLSIVYDHVI---N---PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ 146 (337)
Q Consensus 74 ~~~y~~~~~~y~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~ 146 (337)
...|+..+..|+... . +..|...+ ++.... .++.+|||+|||||.++..+++.. +..+|+|+|+|+.|
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~----~~~~~~-~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKL----IKLLGL-RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp ---------------------------SHH----HHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHhCCCccccCCcHHHHHHHHH----HhccCC-CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 345666666666531 1 22344433 333332 378899999999999999998875 45899999999999
Q ss_pred HHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh-
Q 019684 147 LAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR- 222 (337)
Q Consensus 147 ~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~- 222 (337)
++.|+++.. ..+++++++|++++|+++++||+|++.+.+++++|+.+.++|++|+|||||++++.+...+......
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 999998743 2489999999999999999999999999999999999999999999999999999876655332111
Q ss_pred -------------------------hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 223 -------------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 223 -------------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++......+.+.+++.++|+++||+.++.+.+.
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp HHHH------------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111222345788999999999999998887654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=186.12 Aligned_cols=183 Identities=25% Similarity=0.276 Sum_probs=137.9
Q ss_pred hhHHHhhhhhHhhhcccCCC--cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHH
Q 019684 72 EAFWFYRFLSIVYDHVINPG--HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLA 148 (337)
Q Consensus 72 ~~~~~y~~~~~~y~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~ 148 (337)
.....|+..+..|+...... .....+....++.... +++.+|||+|||+|.++..+++.. +..+|+|+|+|++|++
T Consensus 34 ~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~ 112 (261)
T PLN02233 34 ERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA-KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLA 112 (261)
T ss_pred HHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC-CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 34456777777777532210 0112233333333333 368899999999999999988875 4579999999999999
Q ss_pred HHHhhCC------CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh
Q 019684 149 KAKQKEP------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (337)
Q Consensus 149 ~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 222 (337)
.|+++.. ..+++++++|++++|+++++||+|++.++++|++|+..++++++|+|||||++++.+...+......
T Consensus 113 ~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~ 192 (261)
T PLN02233 113 VAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTT 192 (261)
T ss_pred HHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHH
Confidence 9987642 2478999999999999999999999999999999999999999999999999999876654321110
Q ss_pred -------------------------hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 223 -------------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 223 -------------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++......+.+.+++.++|+++||++++...+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 193 SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 011222357899999999999999999887765
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=170.33 Aligned_cols=233 Identities=33% Similarity=0.468 Sum_probs=158.6
Q ss_pred cccccccccceecccCCCCcccccccccCCcCCCccc-cC-CCcceeeeeccc-c-cCCCCCCchHHhhhhhhhHHHhhh
Q 019684 4 SMLNGAETFTLIRGMTPKGSSFLASDFHGKHIPKLSL-IA-KPRTVQSIKCSL-S-ATSRPASQPRFIQHKKEAFWFYRF 79 (337)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~y~~ 79 (337)
.|.||+-.+ +.|+++.....+.++++.-.+ .. .........|+- . +.+++....++++...+..+++
T Consensus 2 ~~~~~a~~~-------~~~l~~p~~~~~ars~~~~~~~s~s~~~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~-- 72 (296)
T KOG1540|consen 2 LRMNGAILL-------PLGLRSPGSFLNARSFSSNTLLSSSSPSLSVASKCTHFGFKTVRESEKERLVHHVFESVAKK-- 72 (296)
T ss_pred cccchhhhh-------cccccCCccccccccccccccccccccccccccccccccccccchhhhhhHHHHHHHHHHHH--
Confidence 455665532 456666667776666653222 11 111112223332 1 1233333344444444444433
Q ss_pred hhHhhhcccCCCc--chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC------CeEEEEeCCHHHHHHHH
Q 019684 80 LSIVYDHVINPGH--WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------KNVTILDQSPHQLAKAK 151 (337)
Q Consensus 80 ~~~~y~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~------~~v~gvD~s~~~~~~a~ 151 (337)
+...++.+....| |.... +..+.. .++.++||++||||..+..+.+..+. .+|+++|+|+.|++.++
T Consensus 73 YD~mND~mSlGiHRlWKd~~----v~~L~p-~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk 147 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMF----VSKLGP-GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK 147 (296)
T ss_pred HHHHHHHhhcchhHHHHHHh----hhccCC-CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH
Confidence 3444555444333 63332 333333 36799999999999999999988765 89999999999999999
Q ss_pred hhCCC------CCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch-hHh---
Q 019684 152 QKEPL------KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLS--- 221 (337)
Q Consensus 152 ~~~~~------~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~--- 221 (337)
++... ..+.++++|++++||++++||...+.+.+..++|+++.+++++|+|||||++.+.+...... .+.
T Consensus 148 qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 148 QRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred HHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 88622 33889999999999999999999999999999999999999999999999999887655432 111
Q ss_pred ----------------------hhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 222 ----------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 222 ----------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
.++......+.+.+++..+.+++||..+.
T Consensus 228 ~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 228 DQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 11223334578999999999999999886
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=181.62 Aligned_cols=188 Identities=23% Similarity=0.269 Sum_probs=139.9
Q ss_pred hhhhhHHHhhhhhHhhhcccC----CCcch------------HHHHHHhccccCCC----CCCCEEEEEcCcccHHHHHH
Q 019684 69 HKKEAFWFYRFLSIVYDHVIN----PGHWT------------EDMRDDALEPADLS----NRNMLVVDVGGGTGFTTLGI 128 (337)
Q Consensus 69 ~~~~~~~~y~~~~~~y~~~~~----~~~~~------------~~~~~~~l~~~~~~----~~~~~VLDiGcG~G~~~~~l 128 (337)
...+...+|+.....|+.... .+.|. ..+.+.++..+.+. .++.+|||||||+|.++..+
T Consensus 57 ~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~L 136 (340)
T PLN02244 57 LKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYL 136 (340)
T ss_pred HHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHH
Confidence 334556677766666665332 11111 23444455555441 46789999999999999999
Q ss_pred HhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccC
Q 019684 129 VKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204 (337)
Q Consensus 129 ~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~Lkp 204 (337)
++.+ +.+|+|+|+|+.+++.++++.. ..+++++++|+.++++++++||+|++..+++|++|..++++++.++|||
T Consensus 137 a~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkp 215 (340)
T PLN02244 137 ARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAP 215 (340)
T ss_pred HHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCC
Confidence 9986 7899999999999999987642 2468999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCch---------hHhhhhhhhhc-----cCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 205 GGKACIIGPVYPTF---------WLSRYFADVWM-----LFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 205 gG~l~i~~~~~~~~---------~~~~~~~~~~~-----~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
||++++.+...... ........... .+.+.+++.++++++||+++++.++...
T Consensus 216 GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 216 GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 99999976543211 11111111111 2348999999999999999999887643
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=170.69 Aligned_cols=180 Identities=28% Similarity=0.376 Sum_probs=135.4
Q ss_pred HHhhhhhHhhhcccC--CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHH
Q 019684 75 WFYRFLSIVYDHVIN--PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAK 151 (337)
Q Consensus 75 ~~y~~~~~~y~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~ 151 (337)
.+|+..+..|+..-. .-.....++..++..+.+ .++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.+++.++
T Consensus 9 ~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 9 KVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV-QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred HHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 445555555554211 111233344445555554 368899999999999999999875 5679999999999999999
Q ss_pred hhCC---CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhH-h------
Q 019684 152 QKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-S------ 221 (337)
Q Consensus 152 ~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~------ 221 (337)
++.. ..+++++.+|+.++++++++||+|++..+++|++++.++++++.++|+|||++++.+...+.... .
T Consensus 88 ~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~ 167 (231)
T TIGR02752 88 QKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFY 167 (231)
T ss_pred HHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHH
Confidence 7743 24689999999888888889999999999999999999999999999999999988765432211 0
Q ss_pred -------------------hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 222 -------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 222 -------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.........+++.+++.++|+++||+++++..+.
T Consensus 168 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 168 FKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 0111223356789999999999999999888765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-21 Score=171.10 Aligned_cols=160 Identities=22% Similarity=0.285 Sum_probs=128.1
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCc
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~f 176 (337)
...++..+.+ .++.+|||||||+|..+..++..+ +++|+|+|+|+.+++.++++... .++.++.+|+.+.++++++|
T Consensus 41 ~~~~l~~l~l-~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIEL-NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCCC-CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 3444555554 378899999999999999988764 67999999999999999987643 56999999998888888899
Q ss_pred cEEEecccccccC--CHHHHHHHHHHhccCCCEEEEEcCCCCch--h---HhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 177 DRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTF--W---LSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 177 D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
|+|++..+++|++ ++..++++++++|||||++++.+...... + ...+.......+.+.+++.++|+++||+++
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 9999999999986 77899999999999999999987654321 1 111111122245689999999999999999
Q ss_pred EEEEcCcccc
Q 019684 250 QLKRIGPKWY 259 (337)
Q Consensus 250 ~~~~~~~~~~ 259 (337)
+..+..+.|.
T Consensus 199 ~~~d~~~~~~ 208 (263)
T PTZ00098 199 VAKDISDYWL 208 (263)
T ss_pred eEEeCcHHHH
Confidence 9999886654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-21 Score=174.96 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=119.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .+++++++|++++++.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 5679999999999999999875 78999999999999999976432 36899999999888878899999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhH----------hhhhh---hhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL----------SRYFA---DVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+|++|+..+++++.++|||||.+++.+........ ..+.. ..+..+++++++.++|+++||+++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999998765432110 01111 123357899999999999999998885
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
-+.
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 553
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=169.23 Aligned_cols=205 Identities=15% Similarity=0.099 Sum_probs=142.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++|||||||+|.++..+++.+++.+++|+|+|+++++.++++... .+++++..|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 479999999999999999988888999999999999999987532 4679999999665654 47999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcccccccccccc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGL 267 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~ 267 (337)
+.++..+++++.++|||||++++.+....... ..........+.+.+++.++++++||++++...++..+....+....
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l~~~~f 158 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLS-AIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFLYDPGF 158 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCc-cccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhccChhH
Confidence 99999999999999999999999876432110 00000111225688999999999999999999988665332211110
Q ss_pred eeeeeeeeccCCCCCCCCccCchhhcc-cCCCCchhHHH--HHHHHhhhhhhHhhHHHHhhhhhccc
Q 019684 268 IMGCSVTGVKPASGDSPLQLGPKAEDL-SKPVNPFVLLL--RFVLGALAATYFVLVPIYMWLKDQIV 331 (337)
Q Consensus 268 ~~~~~v~~~kp~~~~~~~~~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (337)
. .......+ + ..+. ..+.......+ .+..|......+++++.++|+.+++.
T Consensus 159 ~--~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 212 (224)
T smart00828 159 E--DNLERLYQ------D-----DLDEVTKRHFRGIANLGKLLEKGLASYALLIVQKDEFLSIEELR 212 (224)
T ss_pred H--HHHHHhcc------c-----cchHHHHHHHhhHHHHHHHHHhchHhhEEEEEeccccCCHHHHH
Confidence 0 00000000 0 0111 12222222222 34455566677789999999999874
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-20 Score=164.49 Aligned_cols=146 Identities=23% Similarity=0.264 Sum_probs=113.8
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEE
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYV 180 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~ 180 (337)
++..+.. .++.+|||||||+|.++..+++..|+.+|+|+|+|+.|++.|++ .+++++++|+++++ .+++||+|+
T Consensus 21 ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----~~~~~~~~d~~~~~-~~~~fD~v~ 94 (255)
T PRK14103 21 LLARVGA-ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----RGVDARTGDVRDWK-PKPDTDVVV 94 (255)
T ss_pred HHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----cCCcEEEcChhhCC-CCCCceEEE
Confidence 3444443 36789999999999999999999888999999999999999986 36889999998764 457899999
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC---chhH-hhh-----hh----hh----hccCCCHHHHHHHHHh
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP---TFWL-SRY-----FA----DV----WMLFPKEEEYIEWFQK 243 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~-~~~-----~~----~~----~~~~~~~~~~~~~l~~ 243 (337)
++.+++|++++..++++++++|||||++++..+... .... ... +. .. ...+.+.+++.++|++
T Consensus 95 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 95 SNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred EehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 999999999999999999999999999998754321 1111 000 10 00 1134689999999999
Q ss_pred CCCcEEEEE
Q 019684 244 AGFKDVQLK 252 (337)
Q Consensus 244 aGF~~v~~~ 252 (337)
+||++....
T Consensus 175 aGf~v~~~~ 183 (255)
T PRK14103 175 AGCKVDAWE 183 (255)
T ss_pred CCCeEEEEe
Confidence 999855444
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=159.47 Aligned_cols=144 Identities=23% Similarity=0.263 Sum_probs=119.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe--EEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--KIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||||||-|.++..+++. |++|+|+|+++.+++.|+.++....+ ++.+..++++....++||+|+|..|++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 7899999999999999999999 89999999999999999988766554 4788887777666689999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh------hhhh-------hhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYFA-------DVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
++|++.+++.+.+++||||.+++++.+....... .+.. ..+..+..++++..++..+|+.+.+..-+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 9999999999999999999999998875432111 1110 11224567899999999999998888665
Q ss_pred C
Q 019684 255 G 255 (337)
Q Consensus 255 ~ 255 (337)
.
T Consensus 217 ~ 217 (243)
T COG2227 217 T 217 (243)
T ss_pred E
Confidence 4
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-20 Score=177.88 Aligned_cols=155 Identities=21% Similarity=0.223 Sum_probs=125.8
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEE
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRY 179 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i 179 (337)
++.+.+ .++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++... .+++|+.+|+.+.++++++||+|
T Consensus 259 ~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 259 VDKLDL-KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred HHhcCC-CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEE
Confidence 333333 467899999999999999998875 78999999999999999887532 46899999998888888899999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc----hhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT----FWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++..+++|++++..++++++++|||||++++.+..... .............+.+.+++.++|+++||+++++.+..
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRT 416 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence 99999999999999999999999999999998754332 12222222222345789999999999999999888877
Q ss_pred ccc
Q 019684 256 PKW 258 (337)
Q Consensus 256 ~~~ 258 (337)
..+
T Consensus 417 ~~~ 419 (475)
T PLN02336 417 DQF 419 (475)
T ss_pred HHH
Confidence 554
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=156.77 Aligned_cols=182 Identities=29% Similarity=0.401 Sum_probs=134.3
Q ss_pred HHHhhhhhHhhhcc---cCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHH
Q 019684 74 FWFYRFLSIVYDHV---INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAK 149 (337)
Q Consensus 74 ~~~y~~~~~~y~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~ 149 (337)
..+|+..+..|+.. .... .........+...... ++.+|||+|||+|.++..++...+ ..+++++|+++.+++.
T Consensus 14 ~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 91 (239)
T PRK00216 14 AEMFDSIAPKYDLMNDLLSFG-LHRVWRRKTIKWLGVR-PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV 91 (239)
T ss_pred HHHHHHhhhhHHHHHHHHhcC-CcHHHHHHHHHHhCCC-CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Confidence 34556666666421 1111 1223333444444443 678999999999999999999876 5899999999999999
Q ss_pred HHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh-h--
Q 019684 150 AKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-R-- 222 (337)
Q Consensus 150 a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~-- 222 (337)
++++... .++.++.+|+.+.++.+++||+|++..++++..++..+++++.++|+|||.+++.+...+..... .
T Consensus 92 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~ 171 (239)
T PRK00216 92 GREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAY 171 (239)
T ss_pred HHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHH
Confidence 9988543 46899999998877777889999999999999999999999999999999998876543321100 0
Q ss_pred -----------------------hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 223 -----------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 223 -----------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
........+++.+++.++|+++||+++++......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 229 (239)
T PRK00216 172 DFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGG 229 (239)
T ss_pred HHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecC
Confidence 00111134568899999999999999999887633
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=161.86 Aligned_cols=145 Identities=20% Similarity=0.325 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC-CCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~-~~~~~fD~i~~~~ 183 (337)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++... .+++++++|+.+++ +.+++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 35689999999999999999987 78999999999999999987532 46889999997654 5567899999999
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhh--------hhh---------hccCCCHHHHHHHHHhCCC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF--------ADV---------WMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~l~~aGF 246 (337)
+++|+.++..+++++.++|||||++++.............. ... .....+++++.++|+++||
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf 200 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGW 200 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCC
Confidence 99999999999999999999999998875554322111110 000 0123578999999999999
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
++++..-+.
T Consensus 201 ~~~~~~gi~ 209 (255)
T PRK11036 201 QIMGKTGVR 209 (255)
T ss_pred eEeeeeeEE
Confidence 998776543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-20 Score=155.09 Aligned_cols=133 Identities=29% Similarity=0.395 Sum_probs=106.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.+|||||||+|.++..+++. +.+++|+|+|+.+++. .+......+....+.++++||+|++..+++|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 47899999999999999999777 6699999999999988 23444554444545667899999999999999
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh----h-h--hhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY----F-A--DVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----~-~--~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
+|+..+++++.++|||||++++.++.......... . . ..+..+++.+++.++++++||++++
T Consensus 92 ~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 92 PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999887542111111 0 1 1233567999999999999999886
|
... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-20 Score=138.32 Aligned_cols=95 Identities=37% Similarity=0.571 Sum_probs=87.2
Q ss_pred EEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHH
Q 019684 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG 194 (337)
Q Consensus 115 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~ 194 (337)
||+|||+|..+..+++. ++.+|+++|+|+.+++.++++....++.+..+|++++|+++++||+|++..+++|++++.++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 89999999999999998 78999999999999999999988788889999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEE
Q 019684 195 IREAYRVLKLGGKACI 210 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i 210 (337)
++++.|+|||||+++|
T Consensus 80 l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCcCeEEeC
Confidence 9999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=166.06 Aligned_cols=146 Identities=24% Similarity=0.302 Sum_probs=114.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh--hC--CCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KE--PLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~--~~--~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..++... ...|+|+|+|+.++..++. +. ...++.++.+|++++++ +++||+|++..++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 57899999999999999999883 3469999999999876443 22 13579999999999888 7789999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCch------hHhhhhhhhh--ccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRYFADVW--MLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
+|..++..++++++++|+|||.+++.+...... ...++ .... ...++.+++.++|+++||+++++......
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~t 278 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-AKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSVT 278 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-hcCccceeCCCHHHHHHHHHHcCCceEEEEeCCCC
Confidence 999999999999999999999998864322110 01111 1111 12358999999999999999999887754
Q ss_pred c
Q 019684 258 W 258 (337)
Q Consensus 258 ~ 258 (337)
+
T Consensus 279 ~ 279 (322)
T PRK15068 279 T 279 (322)
T ss_pred C
Confidence 4
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=155.79 Aligned_cols=173 Identities=21% Similarity=0.179 Sum_probs=123.4
Q ss_pred hHHHhhhhhHhhhcccC------CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHH
Q 019684 73 AFWFYRFLSIVYDHVIN------PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 146 (337)
Q Consensus 73 ~~~~y~~~~~~y~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~ 146 (337)
....|+..+..|+.... +..|...+...+.... .++.+|||||||||.++..+++.. +.+|+|+|+|++|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~---~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~M 86 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC---GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENM 86 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc---CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHH
Confidence 34567777777775421 1224444444333222 246899999999999999999886 5799999999999
Q ss_pred HHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCC-EEEEEcCCCCc------h-
Q 019684 147 LAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGG-KACIIGPVYPT------F- 218 (337)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~~~~------~- 218 (337)
++.|+++ ..++++|++++|+++++||+|++..+++|++|+++.+++++|+|||.. .+.+..+.... .
T Consensus 87 l~~a~~~-----~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y 161 (226)
T PRK05785 87 LKMNLVA-----DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFY 161 (226)
T ss_pred HHHHHhc-----cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHH
Confidence 9999864 246789999999999999999999999999999999999999999953 33332222110 0
Q ss_pred ----------------hHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 219 ----------------WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 219 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....++......+.+.+++.++|+++| ..++.+.+.
T Consensus 162 ~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~ 213 (226)
T PRK05785 162 LRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERG 213 (226)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEcc
Confidence 001122233345788999999999974 656666554
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=153.64 Aligned_cols=160 Identities=25% Similarity=0.357 Sum_probs=124.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhh--CCCCCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK--EPLKECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~d~~~~~~ 171 (337)
..++..++....+. ++.+|||+|||+|.++..+++.+ |..+++|+|+|+.+++.++++ ....++.+...|+.+.++
T Consensus 5 ~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 5 RRYRARTFELLAVQ-PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC
Confidence 34445555555553 78899999999999999999887 678999999999999999887 233578999999988888
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch--------hHhhhhhhh---hccCCCHHHHHHH
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF--------WLSRYFADV---WMLFPKEEEYIEW 240 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~ 240 (337)
.+++||+|++..+++|++++..+++++.++|||||.+++.++..... ......... .....+...+.++
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGL 163 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 88899999999999999999999999999999999999887542211 111111111 1122456789999
Q ss_pred HHhCCCcEEEEEEcC
Q 019684 241 FQKAGFKDVQLKRIG 255 (337)
Q Consensus 241 l~~aGF~~v~~~~~~ 255 (337)
|+++||+++++....
T Consensus 164 l~~aGf~~~~~~~~~ 178 (241)
T PRK08317 164 FREAGLTDIEVEPYT 178 (241)
T ss_pred HHHcCCCceeEEEEE
Confidence 999999988776653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=159.66 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=120.8
Q ss_pred CCCcchHHHHHH-hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh---hC-CCCCeEEEE
Q 019684 89 NPGHWTEDMRDD-ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KE-PLKECKIVE 163 (337)
Q Consensus 89 ~~~~~~~~~~~~-~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~---~~-~~~~~~~~~ 163 (337)
.+.+|...+... ++..+.. .++++|||||||+|.++..++... ...|+|+|+|+.++..++. .. ...++.+..
T Consensus 100 ~~~e~~s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~ 177 (314)
T TIGR00452 100 IDSEWRSDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP 177 (314)
T ss_pred CCHHHHHHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 344565555533 3444333 267899999999999999888873 3479999999999876432 22 235678888
Q ss_pred cCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch------hHhhh--hhhhhccCCCHH
Q 019684 164 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRY--FADVWMLFPKEE 235 (337)
Q Consensus 164 ~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~--~~~~~~~~~~~~ 235 (337)
.++++++.. .+||+|++..+++|.+++..++++++++|||||.|++.+...... ...++ +... ...++.+
T Consensus 178 ~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv-~flpS~~ 255 (314)
T TIGR00452 178 LGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV-YFIPSVS 255 (314)
T ss_pred CCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc-ccCCCHH
Confidence 999888754 479999999999999999999999999999999999875322110 00111 1111 1246899
Q ss_pred HHHHHHHhCCCcEEEEEEcCcc
Q 019684 236 EYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
++..+|+++||+++++......
T Consensus 256 ~L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 256 ALKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHHHCCCeEEEEEeccCC
Confidence 9999999999999999887644
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=154.53 Aligned_cols=147 Identities=29% Similarity=0.428 Sum_probs=116.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||+|||+|..+..++... +..+|+++|+|+.+++.|+++.. ..+++++.+|++++++++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 378999999999999888777664 34689999999999999998632 25789999999998888889999999999
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh--hhhhh----ccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY--FADVW----MLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++|.++...+++++.++|||||++++.+........... ....+ ....+.+++.++|+++||.++++....
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~~ 232 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPKR 232 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEecc
Confidence 999999999999999999999999997654322110000 01111 123578899999999999998875543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=153.18 Aligned_cols=149 Identities=23% Similarity=0.277 Sum_probs=118.2
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 174 (337)
......+++.+.. .++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ...++++|++++++.++
T Consensus 28 ~~~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d~~~~~~~~~ 102 (251)
T PRK10258 28 RQSADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA--ADHYLAGDIESLPLATA 102 (251)
T ss_pred HHHHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--CCCEEEcCcccCcCCCC
Confidence 3344444444443 25689999999999999988876 6899999999999999998753 35688999999898888
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhH-hhhhh-----hhhccCCCHHHHHHHHHhCCCcE
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFA-----DVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+||+|+++.++++.+++..++.++.++|+|||.+++.......... ...+. .....+.+.+++.+++...|++.
T Consensus 103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred cEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 9999999999999999999999999999999999998766543321 11111 11235678999999999999864
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-19 Score=145.95 Aligned_cols=135 Identities=27% Similarity=0.461 Sum_probs=107.6
Q ss_pred CCCEEEEEcCcccHHHHHHH-hhCCCCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCCC--CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLP--FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~~--~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.++..++ +..++.+++|+|+|+.+++.|+++ ....+++|+++|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 67899999999999999999 456789999999999999999985 33358999999998876 54 6799999999
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh------hhhhhhhccCC---CHHHHHHHHHhCC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYFADVWMLFP---KEEEYIEWFQKAG 245 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~l~~aG 245 (337)
+++|+.++..+++++.+.|++||.+++.+......... ......+.... +.+++..+|++||
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGNDKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC---CCCGHHHHHHHTT
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHhcC
Confidence 99999999999999999999999999987762221111 11112222223 7788889999887
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-19 Score=157.36 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=108.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhh--CCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKH--VDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
.++.+|||||||+|..+..+++. .|+.+++|+|+|+.|++.|+++.. ..+++++++|+.+++++ .+|+|++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 36789999999999999888873 478999999999999999998753 24689999999887764 49999999
Q ss_pred ccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCc-hh----Hhhhhh-----------------hh---hccCCCHH
Q 019684 183 GSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT-FW----LSRYFA-----------------DV---WMLFPKEE 235 (337)
Q Consensus 183 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~-~~----~~~~~~-----------------~~---~~~~~~~~ 235 (337)
.+++|+++. ..++++++++|||||.+++.+..... .. ...... .. .....+.+
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 999999754 57999999999999999998643211 00 000000 00 01125889
Q ss_pred HHHHHHHhCCCcEEEE
Q 019684 236 EYIEWFQKAGFKDVQL 251 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~ 251 (337)
+..++|+++||+.+++
T Consensus 213 ~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 213 THKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHcCchhHHH
Confidence 9999999999986544
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=156.16 Aligned_cols=162 Identities=22% Similarity=0.188 Sum_probs=113.2
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~ 172 (337)
..+.+++.+.+. +|.+|||||||.|.++..+++.+ +++|+|+++|+++.+.++++... .++++...|..+++.
T Consensus 50 k~~~~~~~~~l~-~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLK-PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHhCCC-CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-
Confidence 344556777764 89999999999999999999997 78999999999999999876433 458899999887653
Q ss_pred CCCccEEEeccccccc--CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh-------hhhhhhh---ccCCCHHHHHHH
Q 019684 173 TDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-------RYFADVW---MLFPKEEEYIEW 240 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~ 240 (337)
+||.|++..+++|+ .+...+++++.++|||||++++........... .++.... -..++.+++...
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 79999999999999 456899999999999999999875443322111 1111111 124578889999
Q ss_pred HHhCCCcEEEEEEcCcccccccc
Q 019684 241 FQKAGFKDVQLKRIGPKWYRGVR 263 (337)
Q Consensus 241 l~~aGF~~v~~~~~~~~~~~~~~ 263 (337)
++++||++.++..++.++.+..+
T Consensus 205 ~~~~~l~v~~~~~~~~hY~~Tl~ 227 (273)
T PF02353_consen 205 AEDAGLEVEDVENLGRHYARTLR 227 (273)
T ss_dssp HHHTT-EEEEEEE-HHHHHHHHH
T ss_pred HhcCCEEEEEEEEcCcCHHHHHH
Confidence 99999999999999876654433
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=152.00 Aligned_cols=143 Identities=27% Similarity=0.329 Sum_probs=119.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
.+.+|||+|||+|.++..+++..+..+++++|+|+.+++.++++.. .++.++.+|+.+.++++++||+|++..+++|..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-CCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 4579999999999999999999888899999999999999998765 478999999998888888999999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCCCCchhH-hhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
++..+++++.++|+|||.+++.++....... ..........+.+.+++.++++++ |+.+.....
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 177 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEEE 177 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence 9999999999999999999998766544321 111222334577899999999998 987765443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=152.54 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=110.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
.++.+|||+|||+|.++..+++.+ |+++++|+|+|+.|++.|+++... .+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 367899999999999999998863 689999999999999999987432 4689999999887764 48999999
Q ss_pred ccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCc-hhHhhhhh---------------------hh---hccCCCHH
Q 019684 183 GSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPT-FWLSRYFA---------------------DV---WMLFPKEE 235 (337)
Q Consensus 183 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~~~~---------------------~~---~~~~~~~~ 235 (337)
.+++|+++ ...++++++++|||||.+++.++.... ......+. +. .....+.+
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence 99999864 468999999999999999998764321 11101000 00 11246899
Q ss_pred HHHHHHHhCCCcEEEE
Q 019684 236 EYIEWFQKAGFKDVQL 251 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~ 251 (337)
++.++|+++||+.+++
T Consensus 210 ~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 210 THKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHcCCchHHH
Confidence 9999999999986553
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=145.20 Aligned_cols=146 Identities=32% Similarity=0.452 Sum_probs=119.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++.. ..++.++.+|+.+.++.+++||+|++..++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 6789999999999999999998765 699999999999999998753 34688999999888877778999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchh---------Hhh-----------------hhhhhhccCCCHHHHHHHH
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFW---------LSR-----------------YFADVWMLFPKEEEYIEWF 241 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~-----------------~~~~~~~~~~~~~~~~~~l 241 (337)
.+++..+++++.+.|+|||++++.+...+... ... +....+..+.+.+++.++|
T Consensus 119 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (223)
T TIGR01934 119 VTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAML 198 (223)
T ss_pred cccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999998765432210 000 0011123456889999999
Q ss_pred HhCCCcEEEEEEcC
Q 019684 242 QKAGFKDVQLKRIG 255 (337)
Q Consensus 242 ~~aGF~~v~~~~~~ 255 (337)
+++||+++++..+.
T Consensus 199 ~~aGf~~~~~~~~~ 212 (223)
T TIGR01934 199 KEAGFEEVRYRSLT 212 (223)
T ss_pred HHcCCccceeeeee
Confidence 99999999988876
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=148.43 Aligned_cols=146 Identities=25% Similarity=0.345 Sum_probs=113.0
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccE
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR 178 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 178 (337)
..++..+.. .++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++. .++.++.+|+.++. .+++||+
T Consensus 21 ~~ll~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--~~~~~~~~d~~~~~-~~~~fD~ 96 (258)
T PRK01683 21 RDLLARVPL-ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--PDCQFVEADIASWQ-PPQALDL 96 (258)
T ss_pred HHHHhhCCC-cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--CCCeEEECchhccC-CCCCccE
Confidence 334444444 3678999999999999999999888899999999999999999875 46889999997654 3458999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc---hh-H---------hhhhhhh---hccCCCHHHHHHHHH
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---FW-L---------SRYFADV---WMLFPKEEEYIEWFQ 242 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~-~---------~~~~~~~---~~~~~~~~~~~~~l~ 242 (337)
|+++.+++|++|...+++++.++|||||.+++..+.... .. . ...+... ...+.+.+.+.+++.
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999987533211 10 0 0000001 113467788999999
Q ss_pred hCCCcE
Q 019684 243 KAGFKD 248 (337)
Q Consensus 243 ~aGF~~ 248 (337)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999864
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=134.21 Aligned_cols=102 Identities=26% Similarity=0.398 Sum_probs=86.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCC-CCCCCCCCCccEEEecc-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDA-EDLPFPTDYADRYVSAG- 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~-~~~~~~~~~fD~i~~~~- 183 (337)
|+.+|||||||+|.++..+++..++.+|+|+|+|+.+++.++++. ...+++++++|+ ...... +.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999778999999999999999999886 347899999999 443333 4599999999
Q ss_pred ccccc---CCHHHHHHHHHHhccCCCEEEEEc
Q 019684 184 SIEYW---PDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 184 ~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+++++ ++..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 345789999999999999999875
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-18 Score=147.84 Aligned_cols=139 Identities=22% Similarity=0.266 Sum_probs=111.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----C----CeEEEEcCCCCCCCCCCCccEEEe
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~----~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
|++|||+|||+|.++..|++. ++.|+|+|+++.+++.|++.... . ++++...|++... +.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeee
Confidence 488999999999999999999 89999999999999999987432 1 2556666666543 44999999
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc------hhHhhhhhh-------hhccCCCHHHHHHHHHhCCCcE
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT------FWLSRYFAD-------VWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
..+++|+.|++.+++.+.++|||||.+++++..... ......... .|..|.+++++..++..+|+.+
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 999999999999999999999999999998765431 112222222 4456789999999999999987
Q ss_pred EEEEEc
Q 019684 249 VQLKRI 254 (337)
Q Consensus 249 v~~~~~ 254 (337)
.++.-.
T Consensus 245 ~~v~G~ 250 (282)
T KOG1270|consen 245 NDVVGE 250 (282)
T ss_pred hhhhcc
Confidence 666543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-18 Score=144.15 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=104.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .++++...|+.+.++. ++||+|++..+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 5689999999999999999987 78999999999999999876432 3578888999877664 5699999999998
Q ss_pred ccC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 187 YWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 187 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
|++ +...+++++.++|+|||++++.......... ........++.+++.+.++ ||++++....
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~---~~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP---CTVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC---CCCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 876 3568999999999999997654322111000 0001123357889999887 9998877543
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=150.39 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=125.1
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCC
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPT 173 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~ 173 (337)
.+.+++.+.+ ++|++|||||||.|.+++.+++++ +++|+|+++|+++.+.+++++.. .+++++..|..+++
T Consensus 61 ~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 61 LDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHhcCC-CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 3444555666 499999999999999999999998 89999999999999999986432 46888888887764
Q ss_pred CCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhH---hhhhhhhhc---cCCCHHHHHHHHHhCC
Q 019684 174 DYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWL---SRYFADVWM---LFPKEEEYIEWFQKAG 245 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~l~~aG 245 (337)
+.||.|+|..+++|+.. ...+++.+.++|+|||.+++.....+.... ..+....+. ..++..++.+..+++|
T Consensus 136 e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~ 215 (283)
T COG2230 136 EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAG 215 (283)
T ss_pred cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcC
Confidence 34999999999999976 789999999999999999987654433211 111111111 2467899999999999
Q ss_pred CcEEEEEEcCccccccc
Q 019684 246 FKDVQLKRIGPKWYRGV 262 (337)
Q Consensus 246 F~~v~~~~~~~~~~~~~ 262 (337)
|++.+...+.+++.+..
T Consensus 216 ~~v~~~~~~~~hYa~Tl 232 (283)
T COG2230 216 FVVLDVESLRPHYARTL 232 (283)
T ss_pred cEEehHhhhcHHHHHHH
Confidence 99999999887665443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=147.01 Aligned_cols=187 Identities=22% Similarity=0.310 Sum_probs=127.3
Q ss_pred HhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHH
Q 019684 66 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 145 (337)
Q Consensus 66 ~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~ 145 (337)
+..+.++.+.+++ ..+..+|...+....+...-..=.|++|||||||+|.++..++.. +...|+|+|+++.
T Consensus 79 l~PWRKGPf~l~g--------i~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l 149 (315)
T PF08003_consen 79 LMPWRKGPFSLFG--------IHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL 149 (315)
T ss_pred hCCcccCCcccCC--------EeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH
Confidence 3445555555544 223345655554443332211127899999999999999999988 3457999999986
Q ss_pred HHHHHH---hhCCCCC-eEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh--
Q 019684 146 QLAKAK---QKEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-- 219 (337)
Q Consensus 146 ~~~~a~---~~~~~~~-~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-- 219 (337)
...+.. +...... +.+....++++|. .+.||+|+|..||.|..+|-..|.++...|+|||.+++.+...+...
T Consensus 150 f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~ 228 (315)
T PF08003_consen 150 FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENT 228 (315)
T ss_pred HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCce
Confidence 655433 3332222 3333356688887 67899999999999999999999999999999999998754433211
Q ss_pred ----Hhhhhhhhhc--cCCCHHHHHHHHHhCCCcEEEEEEcCcccccccc
Q 019684 220 ----LSRYFADVWM--LFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263 (337)
Q Consensus 220 ----~~~~~~~~~~--~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~ 263 (337)
..++ ..+.. -.+|...+..||+++||+++++..+...-.++.|
T Consensus 229 ~L~P~~rY-a~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR 277 (315)
T PF08003_consen 229 VLVPEDRY-AKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQR 277 (315)
T ss_pred EEccCCcc-cCCCceEEeCCHHHHHHHHHHcCCceEEEecCccCCHHHhc
Confidence 0111 11111 1368999999999999999999988754443333
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=144.26 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=111.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhh----CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||+|||+|.++..+++. .++.+++|+|+|+.|++.|+++....++.+...+...++..+++||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 36789999999999998888753 23569999999999999999887666788888887777777789999999999
Q ss_pred ccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhh----------------hhhhhccCCCHHHHHHHHHhCCC
Q 019684 185 IEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRY----------------FADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 185 l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
+||+++. ..+++++.++++ |.+++.+........... ....+..+++.+++.+++++ ||
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 9999886 479999999998 566666554432111000 01223356899999999999 99
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
++...-.+.
T Consensus 216 ~~~~~~~~~ 224 (232)
T PRK06202 216 RVERQWPFR 224 (232)
T ss_pred eEEecccee
Confidence 987766554
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=135.55 Aligned_cols=143 Identities=24% Similarity=0.268 Sum_probs=112.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeE-EEEcCCCCCC-CCCCCccEEEeccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECK-IVEGDAEDLP-FPTDYADRYVSAGSIE 186 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~-~~~~d~~~~~-~~~~~fD~i~~~~~l~ 186 (337)
..|||||||||..-...-.. |+.+|+++|+++.|-+.+.+.+.+ .++. |+.++.+++| ++++++|.|++..+++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred cceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 46899999999986554433 689999999999999998876543 3455 9999999998 8899999999999999
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh-----HhhhhhhhhccCC----CHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-----LSRYFADVWMLFP----KEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...|+.+.|+++.++|+|||++++.++...... +.......|+... -..+..+.|+++-|+.++.....
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~~ 234 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRFN 234 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhccc
Confidence 999999999999999999999999988766432 1222223233211 12456688999999998887765
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-17 Score=147.37 Aligned_cols=148 Identities=23% Similarity=0.348 Sum_probs=112.0
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCc
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f 176 (337)
+++...+ .++.+|||||||+|.++..+++.+|+.+++++|. +.+++.++++.. ..+++++.+|+.+.++++ +
T Consensus 141 l~~~~~~-~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~ 216 (306)
T TIGR02716 141 LLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--A 216 (306)
T ss_pred HHHHcCC-CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--C
Confidence 3344444 3678999999999999999999999999999998 789999887643 246899999997655543 7
Q ss_pred cEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch---hH---hhhhhh-----hhccCCCHHHHHHHHHh
Q 019684 177 DRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF---WL---SRYFAD-----VWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 177 D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~---~~~~~~-----~~~~~~~~~~~~~~l~~ 243 (337)
|+|++.+++|++.+. .++++++++.|+|||++++.+...... .. ...... ....+.+.+++.++|++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~ 296 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES 296 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHH
Confidence 999999999988765 479999999999999999987533211 11 111110 11124467999999999
Q ss_pred CCCcEEEEE
Q 019684 244 AGFKDVQLK 252 (337)
Q Consensus 244 aGF~~v~~~ 252 (337)
+||+.+++.
T Consensus 297 aGf~~v~~~ 305 (306)
T TIGR02716 297 LGYKDVTMV 305 (306)
T ss_pred cCCCeeEec
Confidence 999988753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=140.68 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=103.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--CeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... ++.+...|+...+++ ++||+|++..+++|
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 4579999999999999999987 789999999999999988765433 366777787665554 57999999999998
Q ss_pred cC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 188 WP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 188 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++ +...+++++.++|||||++++.+......... ........+.+++.++++ +|+++......
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~---~~~~~~~~~~~el~~~f~--~~~~~~~~e~~ 171 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC---HMPFSFTFKEDELRQYYA--DWELLKYNEAV 171 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC---CCCcCccCCHHHHHHHhC--CCeEEEeeccc
Confidence 85 34689999999999999976654322111000 011123468899999997 59888877543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=142.26 Aligned_cols=140 Identities=18% Similarity=0.181 Sum_probs=100.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------CCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++... .+++|...|++++ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 5789999999999999999987 78999999999999999987532 3578888888654 467999999
Q ss_pred cccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhh--------ccCCCHHHHHHHHHhCCCcEEEE
Q 019684 182 AGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--------MLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 182 ~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..+++|+++.. .+++.+.+ +.+||.++...+..............+ ..+.+.+++.++|+++||+++..
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 99999987643 46666664 455555443322211111111111111 12357999999999999998877
Q ss_pred EEcC
Q 019684 252 KRIG 255 (337)
Q Consensus 252 ~~~~ 255 (337)
....
T Consensus 298 ~~~~ 301 (315)
T PLN02585 298 EMTA 301 (315)
T ss_pred EEee
Confidence 6654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=132.66 Aligned_cols=125 Identities=22% Similarity=0.237 Sum_probs=104.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
+++.+|||+|||+|..+..++...++.+|+++|+|+.+++.|+++... .+++++.+|+.+++. +++||+|++..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 358999999999999999999887889999999999999999876432 358999999988776 67899999875
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+...++++++++|||||++++..... ...++.++.+..|+.+..+..+.
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRD-----------------PEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------hHHHHHHHHHhcCceEeeeEEEe
Confidence 4567889999999999999999885432 24557778888899988877765
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-16 Score=137.38 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=113.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~-~~~~~fD~i~~~~~l 185 (337)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..++++...|+.+.+ ..+++||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 36789999999999999998886 6789999999999999987643 234678888886654 345789999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh------hhh-------hhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS------RYF-------ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+|.+++..+++.+.+.|+|||.+++..+........ ... ...+..+.+.+++.++++++||++++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 999999999999999999999999886543221100 000 0112346788999999999999999886
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
...
T Consensus 205 ~~~ 207 (233)
T PRK05134 205 GLH 207 (233)
T ss_pred eEE
Confidence 543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-17 Score=153.22 Aligned_cols=173 Identities=19% Similarity=0.118 Sum_probs=133.8
Q ss_pred CCCchHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEE
Q 019684 60 PASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTI 139 (337)
Q Consensus 60 ~~~~~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~g 139 (337)
+.....+.+|..+..+||+....+....+.|++.++.+.+.++.... ++.+|||+|||+|.++..++...|+.++++
T Consensus 204 RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---~~~rVLDLGcGSG~IaiaLA~~~p~a~VtA 280 (423)
T PRK14966 204 RRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---ENGRVWDLGTGSGAVAVTVALERPDAFVRA 280 (423)
T ss_pred HHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---CCCEEEEEeChhhHHHHHHHHhCCCCEEEE
Confidence 33445678888898999998888888899999999999998877643 457999999999999999998888899999
Q ss_pred EeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCC-CCCCccEEEeccccc-------------cc--------CC----H
Q 019684 140 LDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPF-PTDYADRYVSAGSIE-------------YW--------PD----P 191 (337)
Q Consensus 140 vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~-~~~~fD~i~~~~~l~-------------~~--------~~----~ 191 (337)
+|+|+.+++.|+++... .+++++++|+.+... ..++||+|+++--.. |- .| .
T Consensus 281 VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~y 360 (423)
T PRK14966 281 SDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCI 360 (423)
T ss_pred EECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHH
Confidence 99999999999988543 358999999855332 235799999954211 00 01 2
Q ss_pred HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 192 QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 192 ~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
.++++++.+.|+|||.+++.... ...+.+.+++++.||..+++.
T Consensus 361 r~Ii~~a~~~LkpgG~lilEiG~-----------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 361 RTLAQGAPDRLAEGGFLLLEHGF-----------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred HHHHHHHHHhcCCCcEEEEEECc-----------------cHHHHHHHHHHHCCCcEEEEE
Confidence 36778888999999998765321 135678899999999876653
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=135.83 Aligned_cols=143 Identities=14% Similarity=0.154 Sum_probs=109.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..++.. +.+++|+|+|+.+++.|+++... .++.+.++|+.+++ ++||+|++..++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l 129 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVL 129 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHH
Confidence 6789999999999999999887 67999999999999999987532 36899999998765 679999999999
Q ss_pred cccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhh--------ccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW--------MLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+|++. ...+++++.+++++++.+.+.... ............+ ..+.+.+++.++++++||+++......
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTFAPKT-AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 98864 457899999999877666554322 1111111111111 134688999999999999999988766
Q ss_pred ccc
Q 019684 256 PKW 258 (337)
Q Consensus 256 ~~~ 258 (337)
...
T Consensus 209 ~~~ 211 (219)
T TIGR02021 209 TGF 211 (219)
T ss_pred ccc
Confidence 433
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=132.41 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=113.5
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEE
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i 179 (337)
+++...+.. ...+|.|+|||+|..+..+++++|+..++|+|.|++|++.|+++. ++++|..+|+.++. ++..+|++
T Consensus 21 dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl--p~~~f~~aDl~~w~-p~~~~dll 96 (257)
T COG4106 21 DLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL--PDATFEEADLRTWK-PEQPTDLL 96 (257)
T ss_pred HHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC--CCCceecccHhhcC-CCCccchh
Confidence 345555553 668999999999999999999999999999999999999998876 58899999998854 45679999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh----------------hccCCCHHHHHHHHHh
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV----------------WMLFPKEEEYIEWFQK 243 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~ 243 (337)
+++.++++++|..++|.++...|.|||+|.+.-+..-.......+.+. .....++..+.++|..
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~ 176 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAP 176 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCc
Confidence 999999999999999999999999999999986644322211111111 1123567777888877
Q ss_pred CCCc
Q 019684 244 AGFK 247 (337)
Q Consensus 244 aGF~ 247 (337)
.+=+
T Consensus 177 ~~~r 180 (257)
T COG4106 177 LACR 180 (257)
T ss_pred ccce
Confidence 6544
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=147.76 Aligned_cols=157 Identities=19% Similarity=0.102 Sum_probs=118.1
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEE
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYV 180 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~ 180 (337)
+++.+.+ .++.+|||||||+|.++..+++.+ +++|+|+|+|+++++.|+++....++++...|..++ +++||.|+
T Consensus 159 l~~~l~l-~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Iv 233 (383)
T PRK11705 159 ICRKLQL-KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIV 233 (383)
T ss_pred HHHHhCC-CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEE
Confidence 3344444 378899999999999999998875 679999999999999999987655688888888765 46799999
Q ss_pred ecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchh--Hhhhhhhh---hccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 181 SAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFW--LSRYFADV---WMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 181 ~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
+..+++|+.+ ...+++++.++|||||++++......... ...+.... ...+.+.+++.+.++ .||++.++..
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 9999999854 46899999999999999999765433210 01111110 012457788888766 5999999999
Q ss_pred cCcccccccc
Q 019684 254 IGPKWYRGVR 263 (337)
Q Consensus 254 ~~~~~~~~~~ 263 (337)
++.++.+...
T Consensus 313 ~~~hy~~TL~ 322 (383)
T PRK11705 313 FGADYDRTLM 322 (383)
T ss_pred ChhhHHHHHH
Confidence 8876654443
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-16 Score=128.51 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=114.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC-CCC-CCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-DLP-FPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~i~~~~~l~ 186 (337)
+++.+|||+|||.|.++..|.+. .+++..|+|++++.+..+.+ .++.++++|++ .+. |++++||.|+++.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----cCCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 48999999999999999999886 58999999999999988886 46789999995 454 8999999999999999
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh-----------------hhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY-----------------FADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
++.+++.+|+++.|+ |...+++-+++..+..+.. +.....++.|..+++++.++.|++++
T Consensus 87 ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 87 AVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred hHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEE
Confidence 999999999999776 6677777666543322211 11111245689999999999999999
Q ss_pred EEEEcCccc
Q 019684 250 QLKRIGPKW 258 (337)
Q Consensus 250 ~~~~~~~~~ 258 (337)
+...+...+
T Consensus 164 ~~~~~~~~~ 172 (193)
T PF07021_consen 164 ERVFLDGGR 172 (193)
T ss_pred EEEEEcCCC
Confidence 998887443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-16 Score=140.00 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=103.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .++++...|+...++ +++||+|++..+++|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 3469999999999999999987 78999999999999999876532 257788888876555 567999999999998
Q ss_pred cC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 188 WP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 188 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
++ +...+++++.++|+|||++++.......... ........++.+++.+.++. |+++....
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~---~~~p~~~~~~~~el~~~~~~--~~i~~~~e 259 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP---CPMPFSFTFKEGELKDYYQD--WEIVKYNE 259 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC---CCCCCCcccCHHHHHHHhCC--CEEEEEec
Confidence 86 4468999999999999997765432211100 01112334688999999974 98888754
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=128.86 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=107.6
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP 170 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~ 170 (337)
.+.++..++..+.+. ++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++... .+++++.+|+.. +
T Consensus 16 ~~~~r~~~~~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~ 93 (187)
T PRK08287 16 KEEVRALALSKLELH-RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-E 93 (187)
T ss_pred hHHHHHHHHHhcCCC-CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-h
Confidence 344455455555553 77899999999999999999988889999999999999999876432 468888888743 3
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
+ .++||+|++..... ....+++++.+.|+|||++++..... .+.+++.++++++||+.++
T Consensus 94 ~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~----------------~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 94 L-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL----------------ENLHSALAHLEKCGVSELD 153 (187)
T ss_pred c-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH----------------hhHHHHHHHHHHCCCCcce
Confidence 3 35799999876544 35678999999999999998864321 1356778899999998877
Q ss_pred EEEcC
Q 019684 251 LKRIG 255 (337)
Q Consensus 251 ~~~~~ 255 (337)
+..+.
T Consensus 154 ~~~~~ 158 (187)
T PRK08287 154 CVQLQ 158 (187)
T ss_pred EEEEE
Confidence 75554
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=129.22 Aligned_cols=138 Identities=13% Similarity=0.210 Sum_probs=104.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-C-CCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-PFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++. .+.+++|+|+|+.+++.+++ .+++++.+|+.+ + ++++++||+|++..+++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~----~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~ 87 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA----RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQA 87 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH----cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHc
Confidence 5689999999999999988776 36788999999999999875 357888899865 4 366788999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh-----------------hhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
++++..+++++.+.+++ +++..+......... +.......+.+.+++.++++++||++++
T Consensus 88 ~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 88 TRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 99999999999887654 444433221111000 0011112467899999999999999999
Q ss_pred EEEcC
Q 019684 251 LKRIG 255 (337)
Q Consensus 251 ~~~~~ 255 (337)
.....
T Consensus 165 ~~~~~ 169 (194)
T TIGR02081 165 RAAFD 169 (194)
T ss_pred EEEec
Confidence 88774
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.1e-16 Score=139.91 Aligned_cols=170 Identities=22% Similarity=0.246 Sum_probs=129.9
Q ss_pred hHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCC
Q 019684 64 PRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143 (337)
Q Consensus 64 ~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 143 (337)
..+.+|..+..+||+....+....+.|++.++.+....+.......+..+|||+|||+|.++..++...++.+|+++|+|
T Consensus 68 ~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis 147 (284)
T TIGR00536 68 GVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDIS 147 (284)
T ss_pred CCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECC
Confidence 36788888888898887777788888999999998887765422223369999999999999999999888999999999
Q ss_pred HHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEec-------------ccccccC------------CHHHH
Q 019684 144 PHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSA-------------GSIEYWP------------DPQRG 194 (337)
Q Consensus 144 ~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~-------------~~l~~~~------------~~~~~ 194 (337)
+.+++.|+++... .+++++.+|+.+ ++++.+||+|+++ .+..|.+ ....+
T Consensus 148 ~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~i 226 (284)
T TIGR00536 148 PDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQI 226 (284)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHH
Confidence 9999999987532 348999999865 3444479999995 2333333 23578
Q ss_pred HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHH-hCCCcEEEE
Q 019684 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ-KAGFKDVQL 251 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aGF~~v~~ 251 (337)
++++.++|+|||++++..... ..+.+.+++. +.||..+++
T Consensus 227 i~~a~~~L~~gG~l~~e~g~~-----------------q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 227 IELAPDYLKPNGFLVCEIGNW-----------------QQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHhccCCCEEEEEECcc-----------------HHHHHHHHHHhcCCCceeEE
Confidence 999999999999998764321 2345667777 478976655
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-17 Score=155.96 Aligned_cols=174 Identities=21% Similarity=0.210 Sum_probs=134.6
Q ss_pred CCCchHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCC-----------------------CCCCCEEEE
Q 019684 60 PASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADL-----------------------SNRNMLVVD 116 (337)
Q Consensus 60 ~~~~~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~VLD 116 (337)
+.....+.+|..+..+||+....+...+++|++.++.+++.++....- ..++.+|||
T Consensus 65 rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD 144 (506)
T PRK01544 65 RRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILE 144 (506)
T ss_pred HHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEE
Confidence 334467899999999999999999999999999999999988754320 113468999
Q ss_pred EcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecc---------
Q 019684 117 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAG--------- 183 (337)
Q Consensus 117 iGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~--------- 183 (337)
+|||+|.++..++...|+.+|+++|+|+.+++.|+++... .+++++.+|+.+ .+.+++||+|+++-
T Consensus 145 lG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~ 223 (506)
T PRK01544 145 LGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKS 223 (506)
T ss_pred ccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhh
Confidence 9999999999999888889999999999999999987532 358889999754 23356799999942
Q ss_pred -----cccccCC------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 184 -----SIEYWPD------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 184 -----~l~~~~~------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
+..|.+. ...+++++.++|+|||.+++... +...+.+.+++++.||
T Consensus 224 ~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-----------------~~q~~~v~~~~~~~g~ 286 (506)
T PRK01544 224 EMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-----------------FKQEEAVTQIFLDHGY 286 (506)
T ss_pred hcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-----------------CchHHHHHHHHHhcCC
Confidence 1122211 23578889999999999987522 1235678889999999
Q ss_pred cEEEE
Q 019684 247 KDVQL 251 (337)
Q Consensus 247 ~~v~~ 251 (337)
..+.+
T Consensus 287 ~~~~~ 291 (506)
T PRK01544 287 NIESV 291 (506)
T ss_pred CceEE
Confidence 87655
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-16 Score=127.48 Aligned_cols=118 Identities=29% Similarity=0.295 Sum_probs=95.6
Q ss_pred EEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 138 TILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 138 ~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+|+|+|++|++.|+++.. ..+++++++|++++|+++++||+|++..++++++|+.+++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999976543 13689999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCchhHh-------------------------hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 212 GPVYPTFWLS-------------------------RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 212 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+...+..... .+.......+.+.+++.++|+++||+.+......
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 7665422111 0111112356799999999999999998877654
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=129.22 Aligned_cols=124 Identities=20% Similarity=0.272 Sum_probs=97.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++++.. ..+++++++|+++++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 4789999999999999999887778899999999999988876532 246899999998764 356899999875
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH---HHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI---EWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~aGF~~v~~~~~~ 255 (337)
+.+...+++.+.++|+|||.+++..... ...++. +.+...||+.++...+.
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~~~-----------------~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKGKK-----------------YLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcCCC-----------------cHHHHHHHHHhhhhcCceEeeccccC
Confidence 3456678899999999999999874321 223333 44444899988887765
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=132.63 Aligned_cols=144 Identities=26% Similarity=0.309 Sum_probs=112.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--C-CeEEEEcCCCCCCCC-CCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K-ECKIVEGDAEDLPFP-TDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~-~~~~~~~d~~~~~~~-~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... . ++++...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 5789999999999999988876 56899999999999999886432 2 578888888766543 3689999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh-Hhh-----hh-------hhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSR-----YF-------ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~-----~~-------~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+|..++..+++++.++|+|||.+++......... ... .. ...+..+.+.+++.++++++||+++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 9999999999999999999999998765433111 000 00 0012235688899999999999999887
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
...
T Consensus 203 ~~~ 205 (224)
T TIGR01983 203 GLV 205 (224)
T ss_pred eEE
Confidence 543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.4e-16 Score=139.10 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=129.9
Q ss_pred hHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCC
Q 019684 64 PRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143 (337)
Q Consensus 64 ~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 143 (337)
..+.+|..+..+|++....+....+.+++.++.+....+.......++.+|||+|||+|.++..++...++.+++|+|+|
T Consensus 75 ~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis 154 (284)
T TIGR03533 75 RIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS 154 (284)
T ss_pred CCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence 45788889999999888888888889998888887776653211124579999999999999999998888999999999
Q ss_pred HHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecc------cc-------cccCC------------HHHH
Q 019684 144 PHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAG------SI-------EYWPD------------PQRG 194 (337)
Q Consensus 144 ~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~------~l-------~~~~~------------~~~~ 194 (337)
+.+++.|+++... .+++++.+|+.+ ++++++||+|+++- .+ .|.+. ...+
T Consensus 155 ~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~i 233 (284)
T TIGR03533 155 PDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRI 233 (284)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHH
Confidence 9999999987532 358999999854 23455799999851 11 11111 2467
Q ss_pred HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
++++.++|+|||++++.... +.+.+.+++.++||.......
T Consensus 234 l~~a~~~L~~gG~l~~e~g~------------------~~~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 234 LAEAADHLNENGVLVVEVGN------------------SMEALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred HHHHHHhcCCCCEEEEEECc------------------CHHHHHHHHHhCCCceeeecC
Confidence 89999999999999875431 335677888889987655444
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-17 Score=125.04 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=63.6
Q ss_pred EEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC--CCCCCccEEEecccccccC
Q 019684 115 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 115 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~~~~~fD~i~~~~~l~~~~ 189 (337)
||||||+|.++..+.+.+|..+++|+|+|+.+++.++++... .+......+..+.. ...++||+|++.++++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999999999999999999999999999888766432 22334443333322 1225899999999999999
Q ss_pred CHHHHHHHHHHhccCCCEE
Q 019684 190 DPQRGIREAYRVLKLGGKA 208 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l 208 (337)
++..++++++++|||||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=129.37 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
+++.+|||||||+|.++..+++..++.+++|+|+|+.+++.|+++.. ++.+.++|+.+ ++++++||+|++..+++|+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--NINIIQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--CCcEEEeeccC-CCCCCCEEEEEECChhhhC
Confidence 36789999999999999999988788999999999999999998753 56788899887 8888899999999999999
Q ss_pred CC--HHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 189 PD--PQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 189 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+. ..++++++.+++ ++.+++.+...
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 52 357899999987 56777776543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-16 Score=119.69 Aligned_cols=93 Identities=30% Similarity=0.424 Sum_probs=77.8
Q ss_pred EEEEcCcccHHHHHHHhhC---CCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEec-ccccc
Q 019684 114 VVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSA-GSIEY 187 (337)
Q Consensus 114 VLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~-~~l~~ 187 (337)
|||+|||+|..+..+.+.+ |..+++|+|+|+++++.++++.. ..+++++++|+.++++.+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999885 34899999999999999998873 247899999999988888899999995 44999
Q ss_pred cCCH--HHHHHHHHHhccCCC
Q 019684 188 WPDP--QRGIREAYRVLKLGG 206 (337)
Q Consensus 188 ~~~~--~~~l~~~~~~LkpgG 206 (337)
+.+. .++++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 8754 579999999999998
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=133.95 Aligned_cols=166 Identities=28% Similarity=0.306 Sum_probs=120.4
Q ss_pred hhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHH
Q 019684 68 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL 147 (337)
Q Consensus 68 ~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~ 147 (337)
++..+...|++.........+.+++.++.+...++.... ..+.+|||+|||+|.++..++...|..+++|+|+++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~ 124 (251)
T TIGR03534 47 AYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL 124 (251)
T ss_pred HHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH
Confidence 333333444444444444455666777777777766553 345799999999999999999988889999999999999
Q ss_pred HHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEecccccc------cC--------------------CHHHHHHHH
Q 019684 148 AKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIEY------WP--------------------DPQRGIREA 198 (337)
Q Consensus 148 ~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~------~~--------------------~~~~~l~~~ 198 (337)
+.++++... .++.++.+|+.+ ++++++||+|+++-.... +. ....+++++
T Consensus 125 ~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~ 203 (251)
T TIGR03534 125 AVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQA 203 (251)
T ss_pred HHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHH
Confidence 999977432 358899999966 455678999998532221 11 123678999
Q ss_pred HHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 199 YRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 199 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
.++|+|||.+++... +...+++.++|+++||+.+++..
T Consensus 204 ~~~L~~gG~~~~~~~-----------------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 204 PRLLKPGGWLLLEIG-----------------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred HHhcccCCEEEEEEC-----------------ccHHHHHHHHHHhCCCCceEEEe
Confidence 999999999988532 12356788999999999777644
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=148.69 Aligned_cols=107 Identities=26% Similarity=0.393 Sum_probs=92.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCC--CCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--FPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~--~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|..+..+++.+|+.+++|+|+|+.|++.|+++... .++.++++|+.+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57899999999999999999888999999999999999999987533 35778899998777 778899999999998
Q ss_pred cccC-------------CHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 186 EYWP-------------DPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 186 ~~~~-------------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
|++. +..+++++++++|||||++++.+...+
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 8752 346899999999999999999876433
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=133.81 Aligned_cols=168 Identities=28% Similarity=0.264 Sum_probs=126.0
Q ss_pred HhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHH
Q 019684 66 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 145 (337)
Q Consensus 66 ~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~ 145 (337)
+.++..+...||+....+....+.+++.++.+.+.++..... .++.+|||+|||+|.++..++...|..+++|+|+|+.
T Consensus 65 p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~ 143 (275)
T PRK09328 65 PLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALLL-KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE 143 (275)
T ss_pred CHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhccc-cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH
Confidence 455556666677765556666788888889888887754433 3678999999999999999999988899999999999
Q ss_pred HHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccccc--------------cc------------CCHHHHHH
Q 019684 146 QLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE--------------YW------------PDPQRGIR 196 (337)
Q Consensus 146 ~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~--------------~~------------~~~~~~l~ 196 (337)
+++.++++.. ..++.++.+|+.+ ++.+++||+|+++--.. |. .....+++
T Consensus 144 ~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~ 222 (275)
T PRK09328 144 ALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIE 222 (275)
T ss_pred HHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHH
Confidence 9999998754 3578999999855 23356899999852211 11 11246888
Q ss_pred HHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 197 EAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 197 ~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++.++|+|||++++.... ...+.+.+++++.||..++..
T Consensus 223 ~~~~~Lk~gG~l~~e~g~-----------------~~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 223 QAPRYLKPGGWLLLEIGY-----------------DQGEAVRALLAAAGFADVETR 261 (275)
T ss_pred HHHHhcccCCEEEEEECc-----------------hHHHHHHHHHHhCCCceeEEe
Confidence 999999999999884311 124568889999999866663
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-16 Score=132.93 Aligned_cols=176 Identities=19% Similarity=0.177 Sum_probs=123.8
Q ss_pred HhhhhhHhhhcccCCC--cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh
Q 019684 76 FYRFLSIVYDHVINPG--HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 153 (337)
Q Consensus 76 ~y~~~~~~y~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~ 153 (337)
.|+.+++.+++.+-.. .-...+..+.+..+... +-.++||+|||||..+..+... ..+++|+|+|.+|++.|.++
T Consensus 90 LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 90 LFDQYAERFDHILVDKLGYSVPELLAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCC-ccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence 4455555555543321 22344455555555443 4789999999999999999888 67899999999999999987
Q ss_pred CCCCCeEEEEcCCCC-CC-CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccC
Q 019684 154 EPLKECKIVEGDAED-LP-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231 (337)
Q Consensus 154 ~~~~~~~~~~~d~~~-~~-~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 231 (337)
..... ..++|+.. ++ ..++.||+|++..|+.++.+.+.++......|+|||.+.|+....+...- -.....-..-
T Consensus 167 g~YD~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l~ps~RyA 243 (287)
T COG4976 167 GLYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVLGPSQRYA 243 (287)
T ss_pred cchHH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-eecchhhhhc
Confidence 54432 23333321 11 34567999999999999999999999999999999999998544433211 0111111122
Q ss_pred CCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 232 PKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 232 ~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
.+...+..+++..||++++++.+.-+
T Consensus 244 H~~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 244 HSESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred cchHHHHHHHHhcCceEEEeecccch
Confidence 46677889999999999999988733
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-15 Score=127.48 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=98.7
Q ss_pred cCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCC----CCCCCCccEE
Q 019684 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDL----PFPTDYADRY 179 (337)
Q Consensus 105 ~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~----~~~~~~fD~i 179 (337)
+.+ .++.+|||+|||+|.++..+++..+..+|+++|+++.|++.+.+++.. .|+.++.+|+... ++. ++||+|
T Consensus 68 l~i-~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i 145 (226)
T PRK04266 68 FPI-KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVI 145 (226)
T ss_pred CCC-CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEE
Confidence 444 378999999999999999999987667999999999999877665432 5789999998642 223 459999
Q ss_pred EecccccccCCH---HHHHHHHHHhccCCCEEEEE------cCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 180 VSAGSIEYWPDP---QRGIREAYRVLKLGGKACII------GPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 180 ~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
++. ..++ ..+++++.++|||||++++. +...... . ..++..++++++||+.++
T Consensus 146 ~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~---~----------~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 146 YQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPK---E----------IFKEEIRKLEEGGFEILE 207 (226)
T ss_pred EEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHH---H----------HHHHHHHHHHHcCCeEEE
Confidence 853 3333 34689999999999999994 2221110 0 113455999999999999
Q ss_pred EEEcCc
Q 019684 251 LKRIGP 256 (337)
Q Consensus 251 ~~~~~~ 256 (337)
...+.+
T Consensus 208 ~~~l~p 213 (226)
T PRK04266 208 VVDLEP 213 (226)
T ss_pred EEcCCC
Confidence 988764
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=130.62 Aligned_cols=124 Identities=22% Similarity=0.139 Sum_probs=98.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCC-CCCC--CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDA-EDLP--FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~-~~~~--~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.++++.. ..++.++++|+ +.++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4679999999999999999998888899999999999999987642 25789999999 6665 6678899999876
Q ss_pred cccccC--------CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 184 SIEYWP--------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 184 ~l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
...+.. ....+++++.++|||||.+++...... ....+.+.+++.|+...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~----------------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG----------------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH----------------HHHHHHHHHHhCccccc
Confidence 543322 135799999999999999999764321 13457778888998644
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=131.71 Aligned_cols=173 Identities=21% Similarity=0.162 Sum_probs=129.8
Q ss_pred chHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeC
Q 019684 63 QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (337)
Q Consensus 63 ~~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~ 142 (337)
...+.+|..+..+|++....+....+.++..++.+.+.++........+.+|||+|||+|.++..++...++.+++++|+
T Consensus 39 ~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDi 118 (251)
T TIGR03704 39 AGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADI 118 (251)
T ss_pred cCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEEC
Confidence 45678889998888887777777778888888888888776543222346899999999999999998888889999999
Q ss_pred CHHHHHHHHhhCCCCCeEEEEcCCCCC-CC-CCCCccEEEeccccc--------------ccC--------C----HHHH
Q 019684 143 SPHQLAKAKQKEPLKECKIVEGDAEDL-PF-PTDYADRYVSAGSIE--------------YWP--------D----PQRG 194 (337)
Q Consensus 143 s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~-~~~~fD~i~~~~~l~--------------~~~--------~----~~~~ 194 (337)
|+.+++.++++....+.+++++|+.+. +. ..++||+|+++--.. |.+ | ...+
T Consensus 119 s~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i 198 (251)
T TIGR03704 119 DPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRV 198 (251)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHH
Confidence 999999999987655578899998652 21 135799999863211 110 1 2367
Q ss_pred HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++.+.++|+|||++++..... ..+++.++|++.||......
T Consensus 199 ~~~a~~~L~~gG~l~l~~~~~-----------------~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 199 AAGAPDWLAPGGHLLVETSER-----------------QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHhcCCCCEEEEEECcc-----------------hHHHHHHHHHHCCCCceeeE
Confidence 888889999999999874321 23567889999999754443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=121.95 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=101.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++... .+++++.+|+.+.. .++||+|+++..+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 56789999999999999999884 3999999999999999987532 35788889986543 358999999987776
Q ss_pred cCC---------------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 188 WPD---------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 188 ~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
.++ ...+++++.++|||||++++...... ...++.+.|++.||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------~~~~~~~~l~~~gf 158 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------GEPDTFDKLDERGF 158 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------ChHHHHHHHHhCCC
Confidence 643 24679999999999999998765432 25678889999999
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
....+...+
T Consensus 159 ~~~~~~~~~ 167 (179)
T TIGR00537 159 RYEIVAERG 167 (179)
T ss_pred eEEEEEEee
Confidence 988877665
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=135.20 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=85.9
Q ss_pred CCCEEEEEcCcccH----HHHHHHhhCC-----CCeEEEEeCCHHHHHHHHhhCC-------------------------
Q 019684 110 RNMLVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKEP------------------------- 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~~~~a~~~~~------------------------- 155 (337)
++.+|+|+|||+|. ++..+++..+ +.+|+|+|+|+.+++.|++..-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 5556666543 4789999999999999997531
Q ss_pred -----CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEc
Q 019684 156 -----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 156 -----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+++|.++|+.+.+.++++||+|+|.++++|++++ .+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 135899999998877777889999999999999755 479999999999999999863
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=135.04 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=128.6
Q ss_pred hHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCC
Q 019684 64 PRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143 (337)
Q Consensus 64 ~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 143 (337)
..+.+|..+..+|++....+....+.|++.++.+....+....-..+..+|||+|||+|.++..++...|+.+|+++|+|
T Consensus 87 ~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis 166 (307)
T PRK11805 87 RIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS 166 (307)
T ss_pred CccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC
Confidence 56788999999999888888888888998888887776543211112368999999999999999999888999999999
Q ss_pred HHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEeccc-------------ccccCC------------HHHH
Q 019684 144 PHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGS-------------IEYWPD------------PQRG 194 (337)
Q Consensus 144 ~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~-------------l~~~~~------------~~~~ 194 (337)
+.+++.|+++... .+++++++|+.+ .+++++||+|+++-- ..|.+. ...+
T Consensus 167 ~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i 245 (307)
T PRK11805 167 PDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRI 245 (307)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHH
Confidence 9999999988542 358999999854 233457999998611 112221 2478
Q ss_pred HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
++++.++|+|||++++.... +.+.+.+++.+.||........
T Consensus 246 ~~~a~~~L~pgG~l~~E~g~------------------~~~~~~~~~~~~~~~~~~~~~~ 287 (307)
T PRK11805 246 LAEAPDYLTEDGVLVVEVGN------------------SRVHLEEAYPDVPFTWLEFENG 287 (307)
T ss_pred HHHHHHhcCCCCEEEEEECc------------------CHHHHHHHHhhCCCEEEEecCC
Confidence 99999999999999885321 2345667788888876555443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=145.32 Aligned_cols=139 Identities=20% Similarity=0.189 Sum_probs=108.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCC--CCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAE--DLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~--~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||||||+|.++..+++. ..+|+|+|+|+.+++.+++... ..+++++++|+. .+++++++||+|++..+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 5679999999999999999987 5699999999999998875432 357899999995 4567788999999999999
Q ss_pred ccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch-hHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 187 YWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 187 ~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
|+++. ..+++++.++|||||++++.+...... ...... ....+.+...|.+++.++||...+..
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKN--NPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccC--CCCeecChHHHHHHHHHheeccCCCC
Confidence 99874 689999999999999999987653321 011100 11123467899999999999876543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=125.59 Aligned_cols=137 Identities=14% Similarity=0.049 Sum_probs=102.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---------------CCCCeEEEEcCCCCCCCC-C
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFP-T 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---------------~~~~~~~~~~d~~~~~~~-~ 173 (337)
++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.. ...+++++++|+.+++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 6689999999999999999998 999999999999999864321 124588999999876642 3
Q ss_pred CCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+.||.|+-..+++|++.. ...++.+.++|||||++++.......... .. .....+.+++.+++.. +|.+..+
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----~g-pp~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM----AG-PPFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----CC-cCCCCCHHHHHHHhcC-CceEEEE
Confidence 579999999999999644 46899999999999987776543321110 00 1124688999998863 5665555
Q ss_pred EEc
Q 019684 252 KRI 254 (337)
Q Consensus 252 ~~~ 254 (337)
...
T Consensus 186 ~~~ 188 (213)
T TIGR03840 186 ESR 188 (213)
T ss_pred eec
Confidence 443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=127.98 Aligned_cols=143 Identities=20% Similarity=0.290 Sum_probs=103.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++.+..+|+.. .+++||+|++..++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l 137 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVL 137 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchh
Confidence 6789999999999999999987 56899999999999999987432 368889888533 35789999999999
Q ss_pred cccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh--------hccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV--------WMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+|+++. ..+++++.+.+++++.+.+ .+.............. ...+.+.+++.++++++||++.+...+.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 998754 4788888887754444333 2211111111111111 1124578899999999999999998876
Q ss_pred ccc
Q 019684 256 PKW 258 (337)
Q Consensus 256 ~~~ 258 (337)
..+
T Consensus 217 ~~~ 219 (230)
T PRK07580 217 SGF 219 (230)
T ss_pred chh
Confidence 443
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=131.18 Aligned_cols=131 Identities=20% Similarity=0.273 Sum_probs=96.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC---CeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
+..+|||+|||+|.++..+++..+. .+++|+|+|+.+++.|+++. +++.+.++|+.++|+++++||+|++....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~~sfD~I~~~~~~- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFADQSLDAIIRIYAP- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcCCceeEEEEecCC-
Confidence 5578999999999999999887653 47999999999999998765 46889999999999999999999986541
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh-hhh-hhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-RYF-ADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..++++.|+|||||++++..+........ ... .+........ ....||+.++.+.+.
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~~~~------~~~~gF~~~~~~~~~ 220 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHAPEA------EQLEGFELQHSERLA 220 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccccch------hhccCCCeeeEEEEE
Confidence 24688999999999999987664432211 111 1111111111 134699988777764
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=123.99 Aligned_cols=166 Identities=22% Similarity=0.188 Sum_probs=122.0
Q ss_pred ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC--CeEEEEeCCHHHHHHHHhhCCC--CCeEEE
Q 019684 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL--KECKIV 162 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~--~~~~~~ 162 (337)
++..++|...-...++....- ...+|||||||.|.....+.+..+. ..++++|.||.+++..+++... .++...
T Consensus 50 FfkdR~wL~~Efpel~~~~~~--~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~af 127 (264)
T KOG2361|consen 50 FFKDRNWLLREFPELLPVDEK--SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAF 127 (264)
T ss_pred ccchhHHHHHhhHHhhCcccc--ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccc
Confidence 444566655444443333321 2238999999999999999988766 8999999999999999987543 345445
Q ss_pred EcCCCC----CCCCCCCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh---------
Q 019684 163 EGDAED----LPFPTDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV--------- 227 (337)
Q Consensus 163 ~~d~~~----~~~~~~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~--------- 227 (337)
+.|+.. -+...+++|.|++.++|..++- .+.++.+++++|||||.|++-+....+....++....
T Consensus 128 v~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVR 207 (264)
T KOG2361|consen 128 VWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVR 207 (264)
T ss_pred ceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEc
Confidence 556532 2466789999999999988753 3689999999999999999998876655444332211
Q ss_pred ----hccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 228 ----WMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 228 ----~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
...|++.+++.++++++||..++....
T Consensus 208 gDGT~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 208 GDGTRAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred cCCceeeeccHHHHHHHHHhcccchhcccce
Confidence 114689999999999999998776544
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=129.72 Aligned_cols=171 Identities=23% Similarity=0.231 Sum_probs=128.7
Q ss_pred CchHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEe
Q 019684 62 SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILD 141 (337)
Q Consensus 62 ~~~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD 141 (337)
....+.+|..+..+|++....+.+.++.|++.++.+.+.++...... +.+|||+|||||..++.++...|.++|+|+|
T Consensus 64 ~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~--~~~ilDlGTGSG~iai~la~~~~~~~V~a~D 141 (280)
T COG2890 64 AEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQL--DKRILDLGTGSGAIAIALAKEGPDAEVIAVD 141 (280)
T ss_pred HCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhc--CCcEEEecCChHHHHHHHHhhCcCCeEEEEE
Confidence 34556778888889999999999999999999999999876333322 1279999999999999999999889999999
Q ss_pred CCHHHHHHHHhhCCCCC---eEEEEcCCCCCCCCCCCccEEEecccc--c---cc-C-----C--------------HHH
Q 019684 142 QSPHQLAKAKQKEPLKE---CKIVEGDAEDLPFPTDYADRYVSAGSI--E---YW-P-----D--------------PQR 193 (337)
Q Consensus 142 ~s~~~~~~a~~~~~~~~---~~~~~~d~~~~~~~~~~fD~i~~~~~l--~---~~-~-----~--------------~~~ 193 (337)
+|+.+++.|++|+...+ +.++.+|..+ +.. ++||+|+++--. . +. + + ..+
T Consensus 142 is~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~ 219 (280)
T COG2890 142 ISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRR 219 (280)
T ss_pred CCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHH
Confidence 99999999999876544 4556666644 222 379999995211 1 11 1 1 137
Q ss_pred HHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC-CcEEEEEE
Q 019684 194 GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG-FKDVQLKR 253 (337)
Q Consensus 194 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-F~~v~~~~ 253 (337)
++.++.+.|+|||.+++.... ...+.+.+++.+.| |..+....
T Consensus 220 i~~~a~~~l~~~g~l~le~g~-----------------~q~~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 220 ILGEAPDILKPGGVLILEIGL-----------------TQGEAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred HHHhhHHHcCCCcEEEEEECC-----------------CcHHHHHHHHHhcCCceEEEEEe
Confidence 889999999999999876432 24577889999999 56554443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-14 Score=118.11 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=99.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.-.++||+|||.|.++..|+.. ..+++++|+|+.+++.|+++... +++++++.|+.+. .++++||+|+++.+++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred ccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 4578999999999999999999 56899999999999999998765 7899999999764 356789999999999999
Q ss_pred CCH---HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 189 PDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 189 ~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.+. ..+++.+...|+|||.+++.... ......|-+....+.+.++|.+. |..|+....
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-------d~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHAR-------DANCRRWGHAAGAETVLEMLQEH-LTEVERVEC 180 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE--------HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEec-------CCcccccCcccchHHHHHHHHHH-hhheeEEEE
Confidence 864 46899999999999999986542 11223344445788899999886 555555554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-14 Score=112.17 Aligned_cols=110 Identities=25% Similarity=0.323 Sum_probs=86.4
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCC-CCCCCC
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LPFPTD 174 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~-~~~~~~ 174 (337)
..++..... .++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++.. ..+++++.+|+.. ++...+
T Consensus 9 ~~~~~~~~~-~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 9 ALTLSKLRL-RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 334444443 25679999999999999999998888899999999999999987642 2468888888764 333345
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+||.|++..... ...++++++.+.|+|||++++..
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 799999976544 34689999999999999998863
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=124.98 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=85.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~---~~~~~fD~i~~~~ 183 (337)
...+|||||||+|.++..+++.+|..+++|+|+++.+++.|+++.. ..|++++++|+.+++ ++++++|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999999999999999999999999987643 247999999996543 4456899999876
Q ss_pred cccccCCH--------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 184 SIEYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 184 ~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
...+.... ..+++++.++|||||.+++....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 54433221 46899999999999999987643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=122.78 Aligned_cols=136 Identities=20% Similarity=0.241 Sum_probs=95.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.++||+|||.|..+..|++. |.+|+++|.|+..++.+.+.+. .-.++....|+.+..++ +.||+|++..+++|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 5689999999999999999999 9999999999999988876543 23488899999877665 56999999999998
Q ss_pred cCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 188 WPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 188 ~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
++.. ..+++.+...++|||++++.........-.. ......+.+.++.+.+. ||+++...+
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~---~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP---SPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S---S--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC---CCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 8643 5799999999999999888543211110000 01112345677877776 688877643
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-14 Score=120.55 Aligned_cols=141 Identities=19% Similarity=0.334 Sum_probs=105.3
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAE 167 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~ 167 (337)
+.++++...+...... ++.+|||+|||+|.++..++... +..+|+++|+++.+++.++++.. ..++.++.+|+.
T Consensus 24 t~~~~r~~~l~~l~~~-~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 24 TKEEIRALALSKLRLR-KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred CHHHHHHHHHHHcCCC-CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 3355655556666654 78999999999999999988764 45799999999999999987642 246888999986
Q ss_pred CC-CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 168 DL-PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 168 ~~-~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
+. +..++.||.|++.. ...+...+++++.++|+|||++++..... .+..+..+.|++.||
T Consensus 103 ~~l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~----------------~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 103 EILFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL----------------ETVNNALSALENIGF 163 (198)
T ss_pred hhHhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH----------------HHHHHHHHHHHHcCC
Confidence 53 33345799999854 34567889999999999999998743321 134677889999999
Q ss_pred cEEEEEEc
Q 019684 247 KDVQLKRI 254 (337)
Q Consensus 247 ~~v~~~~~ 254 (337)
. .++..+
T Consensus 164 ~-~~~~~~ 170 (198)
T PRK00377 164 N-LEITEV 170 (198)
T ss_pred C-eEEEEE
Confidence 4 444443
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=124.50 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=85.5
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF 171 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~ 171 (337)
+...+++.+.. .++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.++++... .+++++.+|+.+...
T Consensus 60 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 60 MVAMMCELIEP-RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHhcCC-CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 34444444444 3678999999999999999888753 46999999999999999876432 348899999976544
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
..++||+|++..++++++ +++.+.|+|||++++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence 556899999998887765 4688999999999875
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=112.66 Aligned_cols=139 Identities=21% Similarity=0.252 Sum_probs=110.9
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCC-
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED- 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~- 168 (337)
..++++...+..+... ++++++|||||||..++.++...|..+|+++|-++++++..++|.. -+|++.+.+|+.+
T Consensus 18 TK~EIRal~ls~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 18 TKEEIRALTLSKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred cHHHHHHHHHHhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 4566777777777764 8899999999999999999988889999999999999999887743 4789999999954
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC-c
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF-K 247 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF-~ 247 (337)
++-.+ ++|.|+.... .+.+.+++.+...|||||++++.....+ +.....+++++.|| +
T Consensus 97 L~~~~-~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE----------------~~~~a~~~~~~~g~~e 155 (187)
T COG2242 97 LPDLP-SPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE----------------TLAKALEALEQLGGRE 155 (187)
T ss_pred hcCCC-CCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH----------------HHHHHHHHHHHcCCce
Confidence 44222 6999998876 3567899999999999999998644322 34566789999999 5
Q ss_pred EEEEEE
Q 019684 248 DVQLKR 253 (337)
Q Consensus 248 ~v~~~~ 253 (337)
++++..
T Consensus 156 i~~v~i 161 (187)
T COG2242 156 IVQVQI 161 (187)
T ss_pred EEEEEe
Confidence 555543
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=119.73 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=115.0
Q ss_pred HHhhhhhHhhhcccCCCcchHHHHHHhccccCCCC-CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh
Q 019684 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN-RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 153 (337)
Q Consensus 75 ~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~ 153 (337)
.|++..+.-|..-..--....++....+..+.++. .+.-|||||||+|..+..+.+. +...+|+|+|+.|++.|.++
T Consensus 14 fYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~ 91 (270)
T KOG1541|consen 14 FYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER 91 (270)
T ss_pred eechhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh
Confidence 34445555665433223445556665566555432 3678999999999999988877 78999999999999999974
Q ss_pred CCCCCeEEEEcCC-CCCCCCCCCccEEEecccccccCC-------HH----HHHHHHHHhccCCCEEEEEcCCCCchhHh
Q 019684 154 EPLKECKIVEGDA-EDLPFPTDYADRYVSAGSIEYWPD-------PQ----RGIREAYRVLKLGGKACIIGPVYPTFWLS 221 (337)
Q Consensus 154 ~~~~~~~~~~~d~-~~~~~~~~~fD~i~~~~~l~~~~~-------~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 221 (337)
.-. -.++.+|+ +-+||..++||.+++...+.++-+ +. .++..++.+|++|++.++.-......
T Consensus 92 e~e--gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~--- 166 (270)
T KOG1541|consen 92 ELE--GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA--- 166 (270)
T ss_pred hhh--cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH---
Confidence 322 35788888 779999999999999877765522 22 57888999999999998874322211
Q ss_pred hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 222 RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
..+.+.+....|||.---+.+.
T Consensus 167 -----------q~d~i~~~a~~aGF~GGlvVd~ 188 (270)
T KOG1541|consen 167 -----------QIDMIMQQAMKAGFGGGLVVDW 188 (270)
T ss_pred -----------HHHHHHHHHHhhccCCceeeec
Confidence 3456677778899975444443
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=120.19 Aligned_cols=137 Identities=17% Similarity=0.133 Sum_probs=101.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---------------CCCCeEEEEcCCCCCCCCC-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFPT- 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---------------~~~~~~~~~~d~~~~~~~~- 173 (337)
++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++..+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 5689999999999999999998 899999999999999874321 1246889999998875332
Q ss_pred CCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..||.|+-..+++|++.. .+.++.+.++|+|||.+++........... . .....+.+++.+++.. +|++...
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~---g--Pp~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA---G--PPFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC---C--CCCCCCHHHHHHHhcC-CceEEEe
Confidence 579999999999999643 479999999999999765543322211110 0 1124688999999963 3776666
Q ss_pred EEc
Q 019684 252 KRI 254 (337)
Q Consensus 252 ~~~ 254 (337)
...
T Consensus 189 ~~~ 191 (218)
T PRK13255 189 ERQ 191 (218)
T ss_pred eec
Confidence 554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.9e-14 Score=125.30 Aligned_cols=102 Identities=15% Similarity=0.054 Sum_probs=85.0
Q ss_pred CCCEEEEEcCcccHH-HHH-HHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFT-TLG-IVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~-~~~-l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
++++|+|||||.|.+ ++. ++..+|+.+++|+|+++++++.|++.... ++++|..+|+.+.+...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998743 333 34567889999999999999999988732 56999999997754334679999999
Q ss_pred cccccc--CCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYW--PDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+++++ .++.++++++.+.|+|||.+++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88888 688899999999999999999875
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=121.06 Aligned_cols=151 Identities=16% Similarity=0.088 Sum_probs=103.2
Q ss_pred cchHHHHHHhccc---cCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhC-CCCCeEEEEcCC
Q 019684 92 HWTEDMRDDALEP---ADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDA 166 (337)
Q Consensus 92 ~~~~~~~~~~l~~---~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~ 166 (337)
++...+...++.- +.+ .++.+|||+|||+|.++..+++... ..+|+++|+|+.+.+...+.+ ...|+.++..|+
T Consensus 112 p~rSKlaa~i~~g~~~l~I-kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da 190 (293)
T PTZ00146 112 PFRSKLAAAIIGGVANIPI-KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDA 190 (293)
T ss_pred CcccHHHHHHHCCcceecc-CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCc
Confidence 3445565555433 334 4889999999999999999999863 468999999987554333332 226889999998
Q ss_pred CCC---CCCCCCccEEEecccccccCCH-HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHH----H
Q 019684 167 EDL---PFPTDYADRYVSAGSIEYWPDP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEY----I 238 (337)
Q Consensus 167 ~~~---~~~~~~fD~i~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 238 (337)
... ....++||+|++... .+|. ..++.++.++|||||.+++.-.... . ..-.++++. .
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~-i----------d~g~~pe~~f~~ev 256 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANC-I----------DSTAKPEVVFASEV 256 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccc-c----------ccCCCHHHHHHHHH
Confidence 542 223357999998764 2443 4566799999999999998422111 0 011122222 3
Q ss_pred HHHHhCCCcEEEEEEcCcc
Q 019684 239 EWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 239 ~~l~~aGF~~v~~~~~~~~ 257 (337)
++|+++||+.++...+.+.
T Consensus 257 ~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 257 QKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred HHHHHcCCceEEEEecCCc
Confidence 8899999999999888643
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-14 Score=128.99 Aligned_cols=145 Identities=19% Similarity=0.130 Sum_probs=110.4
Q ss_pred ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEE
Q 019684 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVE 163 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~ 163 (337)
.+.+....+.+...+++.... +++.+|||+|||+|.++..++.. +.+++|+|+++.|++.+++++.. .++.+..
T Consensus 160 ~~~~~~l~~~la~~~~~l~~~-~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~ 236 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLARV-TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR 236 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhCC-CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe
Confidence 444556666677766666555 37889999999999999887665 78999999999999999887532 3478899
Q ss_pred cCCCCCCCCCCCccEEEecccccc--------cCC-HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCH
Q 019684 164 GDAEDLPFPTDYADRYVSAGSIEY--------WPD-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (337)
Q Consensus 164 ~d~~~~~~~~~~fD~i~~~~~l~~--------~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (337)
+|+.++++.+++||+|++.--... ..+ ...+++++.++|||||++++..+..
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------------------- 297 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------------------- 297 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-------------------
Confidence 999988887789999999632211 111 3689999999999999998875532
Q ss_pred HHHHHHHHhCCCcEEEEEEc
Q 019684 235 EEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 235 ~~~~~~l~~aGF~~v~~~~~ 254 (337)
.++.++++++|| ++.....
T Consensus 298 ~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 298 IDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CCHHHHHhhcCc-chheeee
Confidence 245578999999 7766553
|
This family is found exclusively in the Archaea. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=115.01 Aligned_cols=125 Identities=25% Similarity=0.350 Sum_probs=96.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CC--eEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KE--CKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~--~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
++.+|||+|||+|.++..++.. +.+++++|+|+.+++.++++... .+ +.++.+|+.+ ++.+++||+|+++..
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 6789999999999999999988 78999999999999999876421 12 7888888865 344557999998755
Q ss_pred ccccC---------------------CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHh
Q 019684 185 IEYWP---------------------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 185 l~~~~---------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (337)
+.+.. ....+++++.++|||||.+++..+.. ...+++.+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------~~~~~l~~~~~~ 163 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------TGEDEVLEYLEK 163 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------CCHHHHHHHHHH
Confidence 43311 12468999999999999998765321 235678899999
Q ss_pred CCCcEEEEEE
Q 019684 244 AGFKDVQLKR 253 (337)
Q Consensus 244 aGF~~v~~~~ 253 (337)
+||+++....
T Consensus 164 ~g~~~~~~~~ 173 (188)
T PRK14968 164 LGFEAEVVAE 173 (188)
T ss_pred CCCeeeeeee
Confidence 9998876654
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=117.12 Aligned_cols=97 Identities=22% Similarity=0.229 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~i 179 (337)
+++.+|||+|||+|.++..+++.. +..+|+|+|+++ + ...+++.++++|+.+.+ +.+++||+|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 578899999999999999998885 347999999988 1 11256899999998743 567789999
Q ss_pred EecccccccCCH-----------HHHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
++..+.++..++ ..+++++.++|||||.+++...
T Consensus 122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 998766654432 3589999999999999998654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9e-13 Score=115.47 Aligned_cols=147 Identities=21% Similarity=0.205 Sum_probs=100.2
Q ss_pred ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEc
Q 019684 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEG 164 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~ 164 (337)
.+.+...+..+... +..... .++.+|||+|||+|.++..++.. +..+++++|+|+.+++.++++... .+++++.+
T Consensus 15 ~~~p~~ds~~l~~~-l~~~~~-~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~ 91 (223)
T PRK14967 15 VYRPQEDTQLLADA-LAAEGL-GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRG 91 (223)
T ss_pred CcCCCCcHHHHHHH-HHhccc-CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC
Confidence 33444444433333 333333 36789999999999999998876 345999999999999999887543 24778888
Q ss_pred CCCCCCCCCCCccEEEecccccccCC---------------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh
Q 019684 165 DAEDLPFPTDYADRYVSAGSIEYWPD---------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (337)
Q Consensus 165 d~~~~~~~~~~fD~i~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 223 (337)
|+.+ .+.+++||+|+++--...... .+.+++++.++|||||++++......
T Consensus 92 d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------- 163 (223)
T PRK14967 92 DWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------- 163 (223)
T ss_pred chhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc-------
Confidence 8865 345678999999743221111 24678899999999999998644321
Q ss_pred hhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
+..++.+.+++.||.......
T Consensus 164 ---------~~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 164 ---------GVERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred ---------CHHHHHHHHHHCCCCeEEEEe
Confidence 234566677777776444433
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=120.45 Aligned_cols=123 Identities=25% Similarity=0.301 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....++. +...++..+.+||+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~-- 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN-- 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH--
Confidence 37899999999999999887765 3446999999999999999886544431 0001111122699999865332
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....++.++.++|||||++++++.... ..+.+.+.+++.||++++....+
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~~----------------~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILEE----------------QADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcHh----------------hHHHHHHHHHHCCCEEEEEEEeC
Confidence 235788999999999999999865421 35678899999999998877654
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=120.37 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEE----EEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI----VEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||+|||+|.+++..++. +..+++|+|++|.+++.+++|...+++.. ...+.... ...++||+|+++=.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-~~~~~~DvIVANIL 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-PENGPFDVIVANIL 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-cccCcccEEEehhh
Confidence 37899999999999999998887 45679999999999999999977666552 22222222 22358999998752
Q ss_pred ccccCCH-HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 185 IEYWPDP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 185 l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. ++ ..+...+.+.|||||+++++..... ..+.+.+.++++||+++++...+
T Consensus 239 A----~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------q~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 239 A----EVLVELAPDIKRLLKPGGRLILSGILED----------------QAESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred H----HHHHHHHHHHHHHcCCCceEEEEeehHh----------------HHHHHHHHHHhCCCeEeEEEecC
Confidence 2 33 4788999999999999999875422 24678889999999999887764
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=117.55 Aligned_cols=110 Identities=23% Similarity=0.255 Sum_probs=87.0
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~ 170 (337)
..+...++..+.+ .++.+|||||||+|..+..+++..+ ..+|+++|+++++++.++++.. ..+++++.+|+...+
T Consensus 62 p~~~~~~~~~l~~-~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~ 140 (212)
T PRK13942 62 IHMVAIMCELLDL-KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHHHHcCC-CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC
Confidence 3444555555555 3789999999999999999888753 4799999999999999998753 246999999997655
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...++||+|++.....+++ +.+.+.|||||++++.
T Consensus 141 ~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 5667899999987765443 4677899999999885
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=115.05 Aligned_cols=103 Identities=27% Similarity=0.356 Sum_probs=83.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|..+..+++..|..+|+++|+++.+++.++++... .+++++..|..+ ...+++||+|+++--++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 57899999999999999999998888899999999999999987543 238899999855 23367899999987665
Q ss_pred ccCC-----HHHHHHHHHHhccCCCEEEEEcC
Q 019684 187 YWPD-----PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 187 ~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.-.+ .+++++++.++|||||.++++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 4443 35799999999999999977643
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-13 Score=108.57 Aligned_cols=145 Identities=20% Similarity=0.222 Sum_probs=110.8
Q ss_pred hHHHHHHhccccC---CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---C-CeEEEEcCC
Q 019684 94 TEDMRDDALEPAD---LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---K-ECKIVEGDA 166 (337)
Q Consensus 94 ~~~~~~~~l~~~~---~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~-~~~~~~~d~ 166 (337)
.+.+..++.+... +.....+|||+|||.|.++..|++.-=...++|+|.|+.+++.|+..+.. . .++|.+.|+
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 3445555554443 33344599999999999999999872124599999999999998866543 2 399999999
Q ss_pred CCCCCCCCCccEEEeccccccc---CCH-----HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH
Q 019684 167 EDLPFPTDYADRYVSAGSIEYW---PDP-----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (337)
Q Consensus 167 ~~~~~~~~~fD~i~~~~~l~~~---~~~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
.+..+..++||+|+-...+..+ ++. ...+..+.+.|+|||+++|..++. |.+++.
T Consensus 128 ~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-----------------T~dELv 190 (227)
T KOG1271|consen 128 TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-----------------TKDELV 190 (227)
T ss_pred cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc-----------------cHHHHH
Confidence 8867777889999987776654 221 246888999999999999987653 778999
Q ss_pred HHHHhCCCcEEEEEEcC
Q 019684 239 EWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 239 ~~l~~aGF~~v~~~~~~ 255 (337)
+.++..||+.....+..
T Consensus 191 ~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 191 EEFENFNFEYLSTVPTP 207 (227)
T ss_pred HHHhcCCeEEEEeeccc
Confidence 99999999987776654
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-13 Score=116.09 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=84.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~ 172 (337)
+...+++.+.. .++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|+++... .+++++.+|+.+....
T Consensus 65 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 65 MVAMMTELLEL-KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHhCC-CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 34444555554 3789999999999999999998853 46799999999999999987532 4689999999765444
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
..+||+|++.....+++ +.+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKIP------EALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCccccc------HHHHHhcCcCcEEEEE
Confidence 56899999887665543 5678899999999875
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-13 Score=125.35 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=83.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------CCeEEEEcCCCCCCCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~fD~i~~~~ 183 (337)
.+.+|||+|||+|.++..+++..|..+|+++|.|+.+++.++++... .+++++..|..+. +.+++||+|+++-
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP 306 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP 306 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc
Confidence 34699999999999999999999999999999999999999987421 2578888887542 3345799999986
Q ss_pred ccccc---CC--HHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYW---PD--PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~---~~--~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+|.. .+ ..++++++.++|+|||.++++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 66533 22 24789999999999999999853
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=119.33 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC-CCCCCC----CccE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LPFPTD----YADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~-~~~~~~----~fD~ 178 (337)
+++.+|||+|||+|..+..+++..+ +.+|+++|+|++|++.+++++.. .++.++++|+.+ ++.... ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3668999999999999999998865 58999999999999999887432 346778999965 333332 2345
Q ss_pred EEecccccccCC--HHHHHHHHHHhccCCCEEEEE
Q 019684 179 YVSAGSIEYWPD--PQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 179 i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+++..++++++. ...++++++++|+|||.+++.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 555677777754 347999999999999999874
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-13 Score=119.75 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=92.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC----CeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++.... ++.+...+.. +..+++||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH
Confidence 6799999999999999888765 4569999999999999999875432 3445555532 2335689999997654
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+ ....++.++.++|||||+++++..... ..+++.+.+++. |+.++....+
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~~~----------------~~~~v~~~~~~~-f~~~~~~~~~ 285 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGILET----------------QAQSVCDAYEQG-FTVVEIRQRE 285 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCcHh----------------HHHHHHHHHHcc-CceeeEeccC
Confidence 3 235789999999999999999875321 245677788776 9887766543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-12 Score=110.31 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=86.9
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCC-CC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-LP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~-~~ 170 (337)
.+....++..+.. .++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.++++.. ..+++++.+|+.+ ++
T Consensus 26 ~~v~~~l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 26 REVRLLLISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh
Confidence 3444445555554 37789999999999999999887778899999999999999998743 2468899999854 22
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.....+|.++... ..+...+++++.++|+|||++++....
T Consensus 105 ~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 105 QLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred hCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 2223467766532 235678999999999999999988653
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-13 Score=118.98 Aligned_cols=133 Identities=31% Similarity=0.443 Sum_probs=99.6
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
....++ .+..+|||||+|+|.++..+++.+|+.+++..|+ |.+++.+++ .++++++.+|+. -+++. +|+|++
T Consensus 93 ~~~~d~-~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f-~~~P~--~D~~~l 164 (241)
T PF00891_consen 93 LEAFDF-SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---ADRVEFVPGDFF-DPLPV--ADVYLL 164 (241)
T ss_dssp HHHSTT-TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---TTTEEEEES-TT-TCCSS--ESEEEE
T ss_pred hccccc-cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---ccccccccccHH-hhhcc--ccceee
Confidence 333444 3567999999999999999999999999999999 999999888 578999999997 35555 999999
Q ss_pred cccccccCCHH--HHHHHHHHhccCC--CEEEEEcCCCCc----hhHh--hhhhhhhc------cCCCHHHHHHHHH
Q 019684 182 AGSIEYWPDPQ--RGIREAYRVLKLG--GKACIIGPVYPT----FWLS--RYFADVWM------LFPKEEEYIEWFQ 242 (337)
Q Consensus 182 ~~~l~~~~~~~--~~l~~~~~~Lkpg--G~l~i~~~~~~~----~~~~--~~~~~~~~------~~~~~~~~~~~l~ 242 (337)
.+++|+++|.+ .+|+++++.|+|| |+|+|.+...+. .... ....+..+ .-+|.++|.++|+
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 99999998875 7999999999999 999998765332 1111 01122211 2367888888874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-13 Score=136.24 Aligned_cols=168 Identities=18% Similarity=0.145 Sum_probs=125.2
Q ss_pred hhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCC-CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHH
Q 019684 70 KKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 148 (337)
Q Consensus 70 ~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~ 148 (337)
..+..+||+....+...+++|+++++.+.+. +...+.. -++.+|||+|||+|..++.++...+..+|+|+|+|+.+++
T Consensus 78 ~~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~ 156 (1082)
T PLN02672 78 YEGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVK 156 (1082)
T ss_pred CCCeEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 3466789999999999999999999999888 4432210 1356899999999999999999988889999999999999
Q ss_pred HHHhhCCC-------------------CCeEEEEcCCCCCCCC-CCCccEEEecc--------------ccccc------
Q 019684 149 KAKQKEPL-------------------KECKIVEGDAEDLPFP-TDYADRYVSAG--------------SIEYW------ 188 (337)
Q Consensus 149 ~a~~~~~~-------------------~~~~~~~~d~~~~~~~-~~~fD~i~~~~--------------~l~~~------ 188 (337)
.|++|+.. .+++|+++|+.+.... ..+||+|+++- +..|-
T Consensus 157 ~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 157 VAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 99887532 3589999998653211 23699999931 11111
Q ss_pred --------------CC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH-HHHHhCCCcEE
Q 019684 189 --------------PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI-EWFQKAGFKDV 249 (337)
Q Consensus 189 --------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aGF~~v 249 (337)
.| ..+++.++.++|+|||.+++.-... ..+.+. +++++.||+.+
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~-----------------q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR-----------------PGQAVCERLFERRGFRIT 299 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------------HHHHHHHHHHHHCCCCee
Confidence 11 1478889999999999998753211 235566 58999999987
Q ss_pred EEEEcC
Q 019684 250 QLKRIG 255 (337)
Q Consensus 250 ~~~~~~ 255 (337)
.+....
T Consensus 300 ~~~~~~ 305 (1082)
T PLN02672 300 KLWQTK 305 (1082)
T ss_pred EEeeeh
Confidence 775553
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=113.80 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=98.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
...+|||+|||+|.++..++...++.+|+++|+|+.+++.++++. ++++++++|+.+... +.+||+|+++-.+.+.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhcc-cCCCcEEEEcCCccccC
Confidence 457999999999999998888766689999999999999999875 468899999987543 45799999987777653
Q ss_pred CH--------------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 190 DP--------------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 190 ~~--------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
.. .+.+.....+|+|+|.+.+.-... ..++.-.+.+++.++|+++||..
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~----------~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR----------PYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc----------ccccccCCHHHHHHHHHhcCcEe
Confidence 21 245677788889999777662211 12233458899999999999984
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-13 Score=122.45 Aligned_cols=103 Identities=21% Similarity=0.208 Sum_probs=84.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC--eEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
...+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++....+ .+++..|+.+. .+++||+|+++..+|+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccC
Confidence 3468999999999999999999888899999999999999998754433 45677777542 2567999999988876
Q ss_pred cC-----CHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 188 WP-----DPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 188 ~~-----~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.. ..+++++++.++|||||.++++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 32 2368999999999999999987654
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=121.94 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=86.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~--~~~~~~fD~i~~~~~ 184 (337)
.+..+||||||+|.++..++...|...++|+|+++.+++.+.+++. ..|+.++.+|+..+ .++++++|.|++.+.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 5679999999999999999999999999999999999999887643 25799999999653 467889999998654
Q ss_pred ccccCCH------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 185 IEYWPDP------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 185 l~~~~~~------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
..+.... ..+++++.++|+|||.+.+.+..
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 4332222 47999999999999999997654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.7e-13 Score=119.31 Aligned_cols=139 Identities=26% Similarity=0.303 Sum_probs=96.2
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe--EEEEcCCCCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--KIVEGDAEDL 169 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~d~~~~ 169 (337)
|.+..+--..+.... .++.+|||+|||||.+++..++. +..+|+|+|++|.+++.|++|+..+++ .+......+
T Consensus 145 H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~- 220 (295)
T PF06325_consen 145 HPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED- 220 (295)
T ss_dssp CHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC-
T ss_pred CHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc-
Confidence 334444444444443 36889999999999999987776 456899999999999999988543321 222222222
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
...++||+|+++-...- ...++..+.++|+|||+++++..... ..+.+.+.+++ ||+.+
T Consensus 221 -~~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 221 -LVEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE----------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp -TCCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHT-TEEEE
T ss_pred -cccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------HHHHHHHHHHC-CCEEE
Confidence 22478999998754432 24688889999999999999876433 24677788877 99998
Q ss_pred EEEEcC
Q 019684 250 QLKRIG 255 (337)
Q Consensus 250 ~~~~~~ 255 (337)
+....+
T Consensus 280 ~~~~~~ 285 (295)
T PF06325_consen 280 EEREEG 285 (295)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 887754
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-13 Score=103.40 Aligned_cols=102 Identities=30% Similarity=0.391 Sum_probs=82.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~~~~~fD~i~~~~~ 184 (337)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.++.+... .+++++++|+.+.. +.+++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999995 58999999999999999987542 46899999997654 67789999999765
Q ss_pred ccccC--------CHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWP--------DPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..... ....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 55321 124789999999999999988643
|
... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.7e-12 Score=108.47 Aligned_cols=131 Identities=20% Similarity=0.241 Sum_probs=106.7
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCc
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~f 176 (337)
.....+. ++++|||.|+|+|.++..|+... |..+|+.+|+.++..+.|++|+.. +++++..+|+.+.-+++ .|
T Consensus 87 ~~~~gi~-pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~v 164 (256)
T COG2519 87 VARLGIS-PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DV 164 (256)
T ss_pred HHHcCCC-CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-cc
Confidence 3444553 89999999999999999999754 558999999999999999998543 44888999997755555 79
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
|+|++ .+++|..+++.+.++|||||.+++..++.+. .+...+.|++.||..++..++-
T Consensus 165 Dav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ----------------v~kt~~~l~~~g~~~ie~~E~l 222 (256)
T COG2519 165 DAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ----------------VEKTVEALRERGFVDIEAVETL 222 (256)
T ss_pred CEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH----------------HHHHHHHHHhcCccchhhheee
Confidence 99995 5899999999999999999999998876443 2445567888899988776653
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=109.32 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=99.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CC-eEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KE-CKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~-~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
...+.||.|+|-|..+..+...+ --+|-.+|+.+..++.|++.... .+ .++.+..++++..+.++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 45799999999999998876654 56899999999999999987654 23 5778888877655567899999999999
Q ss_pred ccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh-hhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-VWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
|++|.+ ++|+++...|+|||.+++-+....... ..++. -.....+.+.+.+++++||++++....-.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~--~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF--DEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE--EEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC--cccCCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 999875 799999999999999999765433210 00010 01113467899999999999998876643
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=106.24 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=99.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---------------CCCCeEEEEcCCCCCCCC--
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECKIVEGDAEDLPFP-- 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---------------~~~~~~~~~~d~~~~~~~-- 172 (337)
++.+||+.|||.|..+..|++. |.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 5789999999999999999998 899999999999999976521 124689999999887632
Q ss_pred -CCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccC-CCHHHHHHHHHhCCCcE
Q 019684 173 -TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF-PKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 173 -~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aGF~~ 248 (337)
.+.||+|+-..++++++.. .+..+.+.++|+|||.+++......... ..-.| .+.+++.+++.. +|++
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~-------~GPPf~v~~~e~~~lf~~-~~~i 192 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKS-------QTPPYSVTQAELIKNFSA-KIKF 192 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCC-------CCCCCcCCHHHHHHhccC-CceE
Confidence 2579999999999999754 4799999999999999888754322110 00012 367888888864 3444
Q ss_pred EEE
Q 019684 249 VQL 251 (337)
Q Consensus 249 v~~ 251 (337)
..+
T Consensus 193 ~~l 195 (226)
T PRK13256 193 ELI 195 (226)
T ss_pred EEe
Confidence 333
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-12 Score=108.31 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=106.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC--CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~~~~~fD~i~~~~ 183 (337)
...+|||+|||+|..++.++++.+.++++|||+++++.+.|+++... .+++++++|+.++. ....+||+|+|+-
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 47899999999999999999998779999999999999999988543 56999999997654 3345799999953
Q ss_pred ccccc------------------CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC
Q 019684 184 SIEYW------------------PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 184 ~l~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 245 (337)
-..-. .+.+.+++.+.+.|||||.+.++-+.. ...++.++|++.+
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------------rl~ei~~~l~~~~ 186 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------------RLAEIIELLKSYN 186 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------------HHHHHHHHHHhcC
Confidence 32211 123478999999999999999985421 2456788999999
Q ss_pred CcEEEEEEcCcccc
Q 019684 246 FKDVQLKRIGPKWY 259 (337)
Q Consensus 246 F~~v~~~~~~~~~~ 259 (337)
|....+..+-++-.
T Consensus 187 ~~~k~i~~V~p~~~ 200 (248)
T COG4123 187 LEPKRIQFVYPKIG 200 (248)
T ss_pred CCceEEEEecCCCC
Confidence 99988888765543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-12 Score=108.46 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=83.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~ 171 (337)
..+...++..+.. .++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++.. ..+++++.+|..+...
T Consensus 64 p~~~~~l~~~l~~-~~~~~VLeiG~GsG~~t~~la~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 64 PYMVARMTELLEL-KPGDRVLEIGTGSGYQAAVLAHL--VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHH--hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence 3344444544544 37899999999999999988877 3589999999999999988743 2468999999855333
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..++||+|++....+++ .+++.+.|+|||++++...
T Consensus 141 ~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 34689999998766554 3567899999999988643
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=104.01 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~i 179 (337)
+++.+|||+|||+|.++..+++.. +..+++++|+|+.+ ...++.++++|+.+.. +.+++||+|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 478999999999999999988875 45689999999865 1256888989986642 345679999
Q ss_pred Eeccccc--------ccC---CHHHHHHHHHHhccCCCEEEEEc
Q 019684 180 VSAGSIE--------YWP---DPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 180 ~~~~~l~--------~~~---~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++....+ |.. +...+++++.++|+|||++++..
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9864321 111 12578999999999999999864
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=93.71 Aligned_cols=98 Identities=32% Similarity=0.403 Sum_probs=82.9
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCCCC-CCCCccEEEecccccc-
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPF-PTDYADRYVSAGSIEY- 187 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~~~-~~~~fD~i~~~~~l~~- 187 (337)
+|+|+|||+|..+..++. .+..+++++|+++.+++.+++. ....++.++..|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999999888 4578999999999999988832 233568899999976543 4567999999999998
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEE
Q 019684 188 WPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
..+...+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677789999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=104.64 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=88.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~ 173 (337)
+...++..+.. +++.+|||||||+|..+..|++. ..+|+.+|..++..+.|++++ ...|+.++++|...-..+.
T Consensus 60 ~vA~m~~~L~~-~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLEL-KPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCC-CCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 44444555555 48899999999999999999998 459999999999999999874 3457999999997655556
Q ss_pred CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..||.|+.......+|+ .+.+.|||||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 78999999998888875 47889999999988543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-12 Score=109.21 Aligned_cols=148 Identities=20% Similarity=0.159 Sum_probs=110.8
Q ss_pred HHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccC---CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEe
Q 019684 65 RFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPAD---LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILD 141 (337)
Q Consensus 65 ~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD 141 (337)
.+.||+-+...|-+..-..-..+++|+..++++++.+++... .. ++..|||+|||+|.++..++...|.++++++|
T Consensus 101 ~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~AiD 179 (328)
T KOG2904|consen 101 MPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAID 179 (328)
T ss_pred CChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEEe
Confidence 346777777777776666777899999999999888876643 22 45689999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCC----CCeEEEEcCCC-----CCCCCCCCccEEEecccccccCC----------------------
Q 019684 142 QSPHQLAKAKQKEPL----KECKIVEGDAE-----DLPFPTDYADRYVSAGSIEYWPD---------------------- 190 (337)
Q Consensus 142 ~s~~~~~~a~~~~~~----~~~~~~~~d~~-----~~~~~~~~fD~i~~~~~l~~~~~---------------------- 190 (337)
.|+.++..|.+|+.. .++..+..+++ ..+..+++.|+++++--.-.-.|
T Consensus 180 ~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~e 259 (328)
T KOG2904|consen 180 VSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLE 259 (328)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccc
Confidence 999999999988543 44666644442 23355688999999532221111
Q ss_pred ----HHHHHHHHHHhccCCCEEEEEcC
Q 019684 191 ----PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 191 ----~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...++.-+.|+|+|||.+.+...
T Consensus 260 G~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 260 GYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 11467778899999999988654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-11 Score=108.19 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=99.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh----------CCCCCeEEEEcCCCC-CCCCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPLKECKIVEGDAED-LPFPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~~~~~d~~~-~~~~~~~fD~ 178 (337)
...+||+||||+|..+..+.+..+..+|+++|+++++++.|++. ...++++++.+|+.+ +...+++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 56899999999999999888875567999999999999999962 134689999999865 3444567999
Q ss_pred EEecccccc---cCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 179 YVSAGSIEY---WPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 179 i~~~~~l~~---~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
|++...-.. ... -..+++.+.+.|+|||.+++...... . .... ...+.+.|+++||.+.....
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~-~-~~~~----------~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA-D-APLV----------YWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh-h-hHHH----------HHHHHHHHHHhCCceEEEEE
Confidence 998632110 000 14689999999999999987643211 0 0000 12367899999999888777
Q ss_pred cCccc
Q 019684 254 IGPKW 258 (337)
Q Consensus 254 ~~~~~ 258 (337)
..+.+
T Consensus 298 ~vPsy 302 (374)
T PRK01581 298 IVPSF 302 (374)
T ss_pred ecCCC
Confidence 76554
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=108.89 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~i~~~~ 183 (337)
+++.+|||||||+|.++..+++..|+.+++++|+++.+++.|+++.. .++++++.+|+.+ +....++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35689999999999999999999899999999999999999998753 2568999999854 222235799999753
Q ss_pred ccc-ccCC---HHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIE-YWPD---PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~-~~~~---~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.-. ..+. ...+++++.+.|+|||++++.-.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 111 1111 25899999999999999998543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=105.58 Aligned_cols=133 Identities=23% Similarity=0.328 Sum_probs=102.1
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCC---
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP--- 172 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~--- 172 (337)
++..+.+. +|.+|||.|+|+|.++..+++.. |..+|+.+|..++..+.|+++.. ..++++.+.|+.+..+.
T Consensus 32 I~~~l~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 32 ILMRLDIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHcCCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 34455553 89999999999999999999764 67899999999999999998743 35799999999543332
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhc-cCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVL-KLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+..+|.|++ .+++|...+..+.++| +|||++++..++.+. .....+.|++.||.++++
T Consensus 111 ~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------v~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 111 ESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQ----------------VQKTVEALREHGFTDIET 169 (247)
T ss_dssp TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHH----------------HHHHHHHHHHTTEEEEEE
T ss_pred cCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHH----------------HHHHHHHHHHCCCeeeEE
Confidence 356999985 5899999999999999 999999998776443 245567889999999888
Q ss_pred EEcC
Q 019684 252 KRIG 255 (337)
Q Consensus 252 ~~~~ 255 (337)
.++-
T Consensus 170 ~Evl 173 (247)
T PF08704_consen 170 VEVL 173 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=101.25 Aligned_cols=138 Identities=24% Similarity=0.268 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh-CC--------------CCCeEEEEcCCCCCCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EP--------------LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~-~~--------------~~~~~~~~~d~~~~~~~~ 173 (337)
.++.+||..|||.|..+..|+++ |.+|+|+|+|+.+++.+.+. .. ..++++.++|+.+++...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 36789999999999999999998 89999999999999998432 11 135789999998876433
Q ss_pred -CCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 174 -DYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 174 -~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
++||+|+=..+++.++. ..+..+.+.++|+|||.+++.....+..... ... ...+.+++.+++. .+|++..
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~---GPP--f~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME---GPP--FSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS---SSS------HHHHHHHHT-TTEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC---CcC--CCCCHHHHHHHhc-CCcEEEE
Confidence 57999999999988853 3579999999999999955443222111000 000 1236788999998 8999887
Q ss_pred EEEc
Q 019684 251 LKRI 254 (337)
Q Consensus 251 ~~~~ 254 (337)
....
T Consensus 188 l~~~ 191 (218)
T PF05724_consen 188 LEEE 191 (218)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7764
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-11 Score=112.43 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--CeEEEEcCCCCCC--CCCCCccEEEecc-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLP--FPTDYADRYVSAG- 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~--~~~~~fD~i~~~~- 183 (337)
.++.+|||+|||+|..+..+++..++.+|+++|+|+.+++.++++.... +++++++|+.+++ +.+++||.|++.-
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 4789999999999999999999876679999999999999999886432 3678999997653 3456799999532
Q ss_pred -----cccccC------C----------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHH
Q 019684 184 -----SIEYWP------D----------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (337)
Q Consensus 184 -----~l~~~~------~----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (337)
++.+-+ . ..++++++.++|||||++++++...... .+.+.+...++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------------Ene~~v~~~l~ 389 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------------ENEQQIKAFLA 389 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hCHHHHHHHHH
Confidence 111111 1 1268999999999999999887643321 13455556666
Q ss_pred hC-CCcEEE
Q 019684 243 KA-GFKDVQ 250 (337)
Q Consensus 243 ~a-GF~~v~ 250 (337)
+. +|+.+.
T Consensus 390 ~~~~~~~~~ 398 (427)
T PRK10901 390 RHPDAELLD 398 (427)
T ss_pred hCCCCEEec
Confidence 54 566544
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=111.45 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=84.0
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~ 170 (337)
..+...+++.+.+. ++.+|||||||+|.++..+++..+. .+|+++|+++++++.|+++.. ..++.++.+|+.+.+
T Consensus 66 p~l~a~ll~~L~i~-~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 66 PSLMALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHHhcCCC-CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 33444455555543 6789999999999999999987643 579999999999999987643 246889999986655
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...++||+|++...+.+++ ..+.+.|+|||++++.
T Consensus 145 ~~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred cccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEE
Confidence 4456799999886655443 3567899999998875
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-11 Score=106.92 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=87.2
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe---EEEEcCCCCCCCCCCCccE
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC---KIVEGDAEDLPFPTDYADR 178 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~d~~~~~~~~~~fD~ 178 (337)
++.++.. .+.+|||+|||.|.+++.+++..|..+++-+|.|..+++.+++++..+++ .+...|..+ +..+ +||+
T Consensus 151 l~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~ 227 (300)
T COG2813 151 LETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDL 227 (300)
T ss_pred HHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccE
Confidence 4444443 34599999999999999999999999999999999999999998764432 456666654 3334 7999
Q ss_pred EEecccccccCCH-----HHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDP-----QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~-----~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+|+--+|--.+. ++++++..+.|++||.|.++...
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence 9999888754332 37999999999999999988653
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-11 Score=101.79 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=98.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
...++||||.|.|..+..++..+ .+|+++|.|+.|....+++ +.+.+ |..++.-.+.+||+|.|.++|....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k----g~~vl--~~~~w~~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK----GFTVL--DIDDWQQTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC----CCeEE--ehhhhhccCCceEEEeehhhhhccC
Confidence 45789999999999999999884 5799999999998887764 33333 4434443456899999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEc---------CCC-CchhHhhhhhhhhccC-CCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 190 DPQRGIREAYRVLKLGGKACIIG---------PVY-PTFWLSRYFADVWMLF-PKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~---------~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+|..+|+++++.|+|+|++++.- ... ........+.-....+ ...+.+.+.|+.+||+++......
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 99999999999999999998751 111 0000000000000000 013445588999999999988875
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-11 Score=108.30 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=81.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC--------CCCCeEEEEcCCCC-CCCCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECKIVEGDAED-LPFPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~~~d~~~-~~~~~~~fD~i~ 180 (337)
++.+||+||||+|..+..+++..+..+|+++|+++.+++.|++.. ..++++++.+|+.. +...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 568999999999999999988645579999999999999999864 24678999999854 233456899999
Q ss_pred ecccccccCCH----HHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDP----QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+...-.+.+.. ..+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 86543332221 578899999999999998753
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9e-11 Score=112.71 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=96.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC----CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP----FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~----~~~~~fD~i~ 180 (337)
.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++... .+++++.+|+.+++ ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4789999999999999999998753 46999999999999999887543 45889999997765 3456899999
Q ss_pred ec------ccccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH
Q 019684 181 SA------GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (337)
Q Consensus 181 ~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
+. .++.+.++ ..+++.++.+.|||||+++.++...... .+.+.+.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-------------Ene~~v~ 397 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-------------ENEAQIE 397 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hHHHHHH
Confidence 73 34444443 2478999999999999999887654321 1344566
Q ss_pred HHHHhC-CCcEE
Q 019684 239 EWFQKA-GFKDV 249 (337)
Q Consensus 239 ~~l~~a-GF~~v 249 (337)
..|++. +|+.+
T Consensus 398 ~~l~~~~~~~~~ 409 (434)
T PRK14901 398 QFLARHPDWKLE 409 (434)
T ss_pred HHHHhCCCcEec
Confidence 677665 57643
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=97.79 Aligned_cols=99 Identities=30% Similarity=0.408 Sum_probs=75.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--C--CeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K--ECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~--~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
...++|+|||+|.-++.++.. -.+|+|+|+|+.|++.|++.... . ..++...+..++--.+++.|+|++..++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 348999999999888888887 46899999999999999876432 1 12333334444433478999999999997
Q ss_pred ccCCHHHHHHHHHHhccCCC-EEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGG-KACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG-~l~i~~ 212 (337)
++ |.+++++++.|+||+.| .+.+-.
T Consensus 112 WF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 112 WF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 66 67899999999999877 555543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-11 Score=99.97 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=105.0
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCe-EEEEcCCCCC--CC------CCCCccEE
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKEC-KIVEGDAEDL--PF------PTDYADRY 179 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~-~~~~~d~~~~--~~------~~~~fD~i 179 (337)
.+|||||||||..+..++..+|..+..-.|+++..+...++.. ...|+ .-+..|+.+. +. ..++||+|
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 3699999999999999999999999999999988865544321 22332 3355666443 22 24589999
Q ss_pred EecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchh--------Hhhhhh--hhhccCCCHHHHHHHHHhCCCc
Q 019684 180 VSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFW--------LSRYFA--DVWMLFPKEEEYIEWFQKAGFK 247 (337)
Q Consensus 180 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~l~~aGF~ 247 (337)
++.+++|-.+-. +.+++.+.++|+|||.|++..+...... +...+. +....+.+.+++.++.+++|++
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 999999765533 5799999999999999999887544221 111111 1122467899999999999999
Q ss_pred EEEEEEcC
Q 019684 248 DVQLKRIG 255 (337)
Q Consensus 248 ~v~~~~~~ 255 (337)
.++...+.
T Consensus 187 l~~~~~MP 194 (204)
T PF06080_consen 187 LEEDIDMP 194 (204)
T ss_pred cCcccccC
Confidence 88877765
|
The function of this family is unknown. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.6e-11 Score=99.18 Aligned_cols=117 Identities=23% Similarity=0.270 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++...|-|.|||.+.++..+.. ..+|...|+-. .+-.+..+|+..+|++++++|+++..-.|. -
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva------------~n~~Vtacdia~vPL~~~svDv~VfcLSLM-G 134 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA------------PNPRVTACDIANVPLEDESVDVAVFCLSLM-G 134 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-------------SSTTEEES-TTS-S--TT-EEEEEEES----S
T ss_pred CCCEEEEECCCchHHHHHhccc---CceEEEeeccC------------CCCCEEEecCccCcCCCCceeEEEEEhhhh-C
Confidence 4567999999999999866542 46899999832 223477899999999999999999887775 4
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.|+..+++|+.|+|||||.|.|.+... ++.+.+.+.+.+++.||+.......+
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAEV~S--------------Rf~~~~~F~~~~~~~GF~~~~~d~~n 187 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAEVKS--------------RFENVKQFIKALKKLGFKLKSKDESN 187 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEEEGG--------------G-S-HHHHHHHHHCTTEEEEEEE--S
T ss_pred CCcHHHHHHHHheeccCcEEEEEEecc--------------cCcCHHHHHHHHHHCCCeEEecccCC
Confidence 688999999999999999999987542 24477889999999999988866554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=110.91 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC----eEEEEcCCCCCCC--CCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDAEDLPF--PTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~d~~~~~~--~~~~fD~i~~~ 182 (337)
.++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++....+ +.+..+|....+. .+++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 47899999999999999999998777899999999999999998864333 2335566654443 45679999962
Q ss_pred ------ccccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 183 ------GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 183 ------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.++.+.++ ..++++++.++|||||+++++++...
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 34555444 24799999999999999999877653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=103.10 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=82.9
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~ 170 (337)
..+...+++.+.+ +++.+|||||||+|..+..++.... ..+|+++|..+...+.|++++. ..|+.++.+|.....
T Consensus 58 P~~~a~~l~~L~l-~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDL-KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhc-CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 4455556666665 4899999999999999999998753 3579999999999999998754 357999999986544
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
.....||.|++......++ ..+.+.|++||++++.
T Consensus 137 ~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence 4456899999998886554 3477889999999884
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-10 Score=94.90 Aligned_cols=144 Identities=18% Similarity=0.307 Sum_probs=96.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--------------------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------------------------------- 157 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------------------- 157 (337)
.+..+|||||.+|.++..+++.+....+.|+|+++..++.|+++....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 568899999999999999999998888999999999999999865321
Q ss_pred ------CeEEEEcCC-----CCCCCCCCCccEEEeccccccc----CC--HHHHHHHHHHhccCCCEEEEEcCCCCchhH
Q 019684 158 ------ECKIVEGDA-----EDLPFPTDYADRYVSAGSIEYW----PD--PQRGIREAYRVLKLGGKACIIGPVYPTFWL 220 (337)
Q Consensus 158 ------~~~~~~~d~-----~~~~~~~~~fD~i~~~~~l~~~----~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 220 (337)
++.|...+. .-+.+....||+|+|..+-.++ .| ..++++++.++|.|||+|++.-.....+..
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~k 217 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKK 217 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHH
Confidence 111111111 0012345679999996554433 22 358999999999999999886433222211
Q ss_pred h-----hhhhhhhccCCCHHHHHHHHHhC--CCcEEEEEE
Q 019684 221 S-----RYFADVWMLFPKEEEYIEWFQKA--GFKDVQLKR 253 (337)
Q Consensus 221 ~-----~~~~~~~~~~~~~~~~~~~l~~a--GF~~v~~~~ 253 (337)
. ....+....+..++.+..++.+. ||+.++-..
T Consensus 218 aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 218 AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence 1 11122223456789999999887 666544433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=112.64 Aligned_cols=126 Identities=20% Similarity=0.150 Sum_probs=93.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhC----------CCCCeEEEEcCCCC-CCCCCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE----------PLKECKIVEGDAED-LPFPTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~~~d~~~-~~~~~~~fD 177 (337)
++++|||||||+|..+..+.+. +. .+++++|+++++++.++++. ..++++++.+|+.+ +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5689999999999999998875 54 79999999999999999831 23678999999865 223346899
Q ss_pred EEEecccccccCCH-----HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 178 RYVSAGSIEYWPDP-----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 178 ~i~~~~~l~~~~~~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+|++...-...+.. .++++.+.+.|||||.+++..... ... .. ...++.+.++++||.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~-~~~-~~----------~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP-YFA-PK----------AFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc-ccc-hH----------HHHHHHHHHHHcCCEE
Confidence 99997543332221 368999999999999998864321 110 00 1246788999999943
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=109.23 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEec-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSA- 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~~- 182 (337)
.++.+|||+|||+|..+..+++.. ++.+|+++|+|+.+++.+++++.. .+++++.+|+..++ +.+++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 478899999999999999999875 357999999999999999987543 35789999997765 445679999972
Q ss_pred -----ccccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 183 -----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 183 -----~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.++..-++ ..+++.++.+.|||||.++.+++...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22222121 13679999999999999999877643
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=95.31 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=79.5
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCccEEE
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYV 180 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD~i~ 180 (337)
++.+.. .++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... .+++++.+|+.++++++.+||.|+
T Consensus 6 ~~~~~~-~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi 82 (169)
T smart00650 6 VRAANL-RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred HHhcCC-CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEE
Confidence 333443 26789999999999999999988 67999999999999999988643 579999999998887776799999
Q ss_pred ecccccccCCHHHHHHHHHHh--ccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRV--LKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~i~~ 212 (337)
++--++ +. ..++..+.+. +.++|.+++..
T Consensus 83 ~n~Py~-~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 83 GNLPYN-IS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ECCCcc-cH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 865443 32 2444444433 34777777753
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-10 Score=102.10 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=111.1
Q ss_pred cCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC---eEEEEc
Q 019684 88 INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE---CKIVEG 164 (337)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~ 164 (337)
+.|......+++.+.+.+... +|..|||-=||||.+++...-. |++++|+|++..|++.|+.|+..-+ ..+...
T Consensus 176 ~~p~s~~P~lAR~mVNLa~v~-~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~ 252 (347)
T COG1041 176 FRPGSMDPRLARAMVNLARVK-RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV 252 (347)
T ss_pred cCcCCcCHHHHHHHHHHhccc-cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEe
Confidence 345666777888888887775 8999999999999999997777 8999999999999999999876533 334444
Q ss_pred -CCCCCCCCCCCccEEEeccccc-----ccCC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCH
Q 019684 165 -DAEDLPFPTDYADRYVSAGSIE-----YWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE 234 (337)
Q Consensus 165 -d~~~~~~~~~~fD~i~~~~~l~-----~~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 234 (337)
|+..+|+.++++|.|++---.. .... ..++++.+.++||+||++++..+..
T Consensus 253 ~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~------------------- 313 (347)
T COG1041 253 LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD------------------- 313 (347)
T ss_pred cccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------------
Confidence 9999999888999999832211 1111 3579999999999999999986621
Q ss_pred HHHHHHHHhCCCcEEEEEEc
Q 019684 235 EEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 235 ~~~~~~l~~aGF~~v~~~~~ 254 (337)
....+++.||.++.....
T Consensus 314 --~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 314 --PRHELEELGFKVLGRFTM 331 (347)
T ss_pred --chhhHhhcCceEEEEEEE
Confidence 224788899998877654
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=111.33 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEec--
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSA-- 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~-- 182 (337)
.++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++++.. .+++++++|+.+++ ++++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 3678999999999999988887653 46999999999999999887543 35889999997764 45679999962
Q ss_pred ----ccccccC------C----------HHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 183 ----GSIEYWP------D----------PQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 183 ----~~l~~~~------~----------~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.++..-+ + ..+++.++.+.|||||++++.+....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1111111 1 12589999999999999999877643
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=109.01 Aligned_cols=129 Identities=20% Similarity=0.194 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC--CCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP--FPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~~~~~fD~i~~~ 182 (337)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++... .+++++++|+.++. +. ++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 367899999999999999999876 567999999999999999887533 35889999997653 33 679999974
Q ss_pred c------cccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHH
Q 019684 183 G------SIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240 (337)
Q Consensus 183 ~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (337)
- ++.+.++ ...+++++.++|||||.++.++....... +...+...
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E-------------ne~vv~~~ 394 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE-------------NEEVIEAF 394 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh-------------hHHHHHHH
Confidence 2 1222121 12589999999999999998765432211 23345556
Q ss_pred HHhC-CCcEEEE
Q 019684 241 FQKA-GFKDVQL 251 (337)
Q Consensus 241 l~~a-GF~~v~~ 251 (337)
+++. +|+.+..
T Consensus 395 l~~~~~~~~~~~ 406 (444)
T PRK14902 395 LEEHPEFELVPL 406 (444)
T ss_pred HHhCCCcEEecc
Confidence 6665 4765543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=98.83 Aligned_cols=135 Identities=24% Similarity=0.262 Sum_probs=100.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCC--CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL--PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~--~~~~~~fD~i~ 180 (337)
+.+.+|||.++|-|..++...++ ++ +|+.++.++..++.|.-|.- ..+++.+.+|+.+. .+.|++||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 36899999999999999999988 65 99999999999999986632 24578999999553 47899999998
Q ss_pred ec---ccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 181 SA---GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 181 ~~---~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.. +++.-.---.++.++++|+|||||.++-..-.... .++...-+..+.+.|+++||++++....
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---------ryrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---------RYRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---------ccccCChhHHHHHHHHhcCceeeeeehh
Confidence 52 11111111257999999999999999875433221 1112234577889999999998776553
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-10 Score=100.60 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEec--
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSA-- 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~-- 182 (337)
+++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++.. .++.++..|+..++...+.||.|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4788999999999999999988764 36899999999999999887543 45788899987665445679999972
Q ss_pred ----ccccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 183 ----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 183 ----~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.++.+-++ ..++++++.+.|||||+|+.++....
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12222111 12589999999999999998876543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=97.55 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=97.1
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
++.+...+....|.|+|||.+.++. .. ...|+.+|+-+ .|-+++.+|+.++|++|++.|+++.
T Consensus 172 i~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a------------~~~~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 172 IRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA------------VNERVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred HHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeec------------CCCceeeccccCCcCccCcccEEEe
Confidence 3333333567889999999998876 22 34788999821 3556889999999999999999998
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
.-.|. -.|...++.+++|+|+|||.++|.+... .|.+...+...|...||...+....+..
T Consensus 235 CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S--------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 235 CLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS--------------RFSDVKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred eHhhh-cccHHHHHHHHHHHhccCceEEEEehhh--------------hcccHHHHHHHHHHcCCeeeehhhhcce
Confidence 77664 5788999999999999999999987543 2457778999999999998777665533
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.3e-10 Score=96.90 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=110.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC--CeEEEEeCCHHHHHHHHhhCCC---CC-eEEEEcCCCCC---CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL---KE-CKIVEGDAEDL---PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~---~~-~~~~~~d~~~~---~~~~~~fD~i 179 (337)
...-+||||.||.|.........+|. .++...|.|+..++..++.... .+ ++|.++|+.+. .-.+...|++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999999999998876 7899999999999998876543 23 49999999653 2223458999
Q ss_pred EecccccccCCHH---HHHHHHHHhccCCCEEEEEc-CCCCchhH-hhhhh------hhhccCCCHHHHHHHHHhCCCcE
Q 019684 180 VSAGSIEYWPDPQ---RGIREAYRVLKLGGKACIIG-PVYPTFWL-SRYFA------DVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 180 ~~~~~l~~~~~~~---~~l~~~~~~LkpgG~l~i~~-~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+.+..++.++|-+ ..++.+.+.+.|||+++.+. +.++...+ .+.+. ...+...+..++.+++++|||+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 9999999999853 67999999999999999886 34443321 22221 22234579999999999999996
Q ss_pred EEEE
Q 019684 249 VQLK 252 (337)
Q Consensus 249 v~~~ 252 (337)
++..
T Consensus 294 ~~q~ 297 (311)
T PF12147_consen 294 IDQR 297 (311)
T ss_pred hhhe
Confidence 5554
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.4e-10 Score=99.76 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=103.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
.-...+|+|.|.|..+..+...+|. +-+++++...+..+..... ++++.+.+|..+- .|. -|+|++.+++||++
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 3478999999999999999998875 5566666566555555554 6688999998543 333 47999999999999
Q ss_pred CHH--HHHHHHHHhccCCCEEEEEcCCCCch-hHhh------hhhhhhc-------cCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 190 DPQ--RGIREAYRVLKLGGKACIIGPVYPTF-WLSR------YFADVWM-------LFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 190 ~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~------~~~~~~~-------~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
|.+ ++|++++..|+|||++++.+...+.. .... ...+..+ .-.+..++..++.++||.+..+..
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~ 330 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVAL 330 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEe
Confidence 875 89999999999999999998755431 1000 0011111 124789999999999999888776
Q ss_pred cC
Q 019684 254 IG 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 331 ~~ 332 (342)
T KOG3178|consen 331 TA 332 (342)
T ss_pred cc
Confidence 54
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=96.85 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=107.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+....++|||||-|.....+..+. ..+++-+|.|-.|++.++..-. .-.+....+|-+.++|.++++|+|+++..+|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 356789999999999999998882 4689999999999999985432 12256778899999999999999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh-h--hh---------hhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-Y--FA---------DVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~--~~---------~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..|....+.++...|||+|.++-.-.........+ . +. .....|....++-.+|.+|||....+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 99999999999999999999876533322221111 0 00 11112345678889999999986544
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=104.51 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=97.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---------CC----CeEEEEcCCCCCC----CC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LK----ECKIVEGDAEDLP----FP 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---------~~----~~~~~~~d~~~~~----~~ 172 (337)
++.+|||+|||-|..+.-.... .-..++|+|+|...++.|+++.. .. ...|+.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7889999999998877766665 35799999999999999998861 11 2567888875321 33
Q ss_pred C--CCccEEEeccccccc-CCH---HHHHHHHHHhccCCCEEEEEcCCCCchh--Hhh----------------------
Q 019684 173 T--DYADRYVSAGSIEYW-PDP---QRGIREAYRVLKLGGKACIIGPVYPTFW--LSR---------------------- 222 (337)
Q Consensus 173 ~--~~fD~i~~~~~l~~~-~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~---------------------- 222 (337)
+ ..||+|-|.+++|+. .+. ..+++++.+.|+|||+++.+.+...... +..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 3 489999999999987 333 3699999999999999998754322110 000
Q ss_pred ----hhh------------hhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 223 ----YFA------------DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 223 ----~~~------------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.+. +........+.+.+++++.|++.|....+..
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e 270 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE 270 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence 000 0001123578899999999999998877753
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=97.79 Aligned_cols=103 Identities=26% Similarity=0.330 Sum_probs=78.3
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCC-CC--CCCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAED-LP--FPTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~-~~--~~~~~fD~i~~~~~l 185 (337)
..+||||||.|.++..+|...|+..++|+|++...+..+.++. ...|+.++++|+.. +. ++++++|.|+..+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 3899999999999999999999999999999999988887653 34789999999976 32 556889999875433
Q ss_pred cccCCH--------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 186 EYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 186 ~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
-+.... ..++..+.++|+|||.|.+.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 322211 27999999999999999987653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=104.40 Aligned_cols=138 Identities=16% Similarity=0.141 Sum_probs=96.9
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC-
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL- 169 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~- 169 (337)
++.+.+.+++.+.. .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++.. .+++++.+|+.+.
T Consensus 282 ~e~l~~~vl~~l~~-~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDP-QPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcC-CCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 35556666665544 36789999999999999999988 57999999999999999987532 4689999998542
Q ss_pred ---CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 170 ---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 170 ---~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
++.+++||+|++.---.- ....++.+.+ ++|++.++++... .+ + ..++ ..|.+.||
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp-~t--l-------------aRDl-~~L~~~gY 417 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNP-AT--L-------------ARDA-GVLVEAGY 417 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeCh-HH--h-------------hccH-HHHhhCCc
Confidence 244567999997432221 2345555555 6898888887421 11 0 1112 24567899
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
++.++..+.
T Consensus 418 ~l~~i~~~D 426 (443)
T PRK13168 418 RLKRAGMLD 426 (443)
T ss_pred EEEEEEEec
Confidence 999888875
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.7e-10 Score=99.32 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=79.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
.+.+||+||||+|..+..+.+..+..+++++|+++.+++.+++... .++++++.+|..+ +...+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999999988887556789999999999999998642 2467888888743 2222468999998
Q ss_pred cccccccCC----HHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.......+. ..++++.+.+.|+|||.+++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654322222 3578999999999999999863
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=100.04 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCCC-C-CCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-P-FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~-~~~~~fD~i 179 (337)
+++++||+||||.|..+..+++..+..+|+.+|+++.+++.+++... .++++++.+|+... . .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 36789999999999999999887334689999999999999998642 36799999997432 1 225679999
Q ss_pred EecccccccCC----HHHHHHHHHHhccCCCEEEEEc
Q 019684 180 VSAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 180 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++...-.+.+. ...+++.+.+.|+|||.++...
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98543332222 2468999999999999997653
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=93.54 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=88.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC---CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++.. ++.++.+|+...++ +++||+|+++--+.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--~~~~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--EATWINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--CCEEEEcchhcccc-cCCccEEEECCCCC
Confidence 46799999999999999988764 35699999999999999998763 57899999976554 46899999963333
Q ss_pred cc--CC----------HHHHHHHHHHhccCCCEEEEEcCCCC-chhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 187 YW--PD----------PQRGIREAYRVLKLGGKACIIGPVYP-TFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 187 ~~--~~----------~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
-. .+ ...+++.+.++++||+. ++-....+ .+.-..++. +..-.+.....+++++.|+..
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFR--QDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCcccee--eccCcccHHHHHHHHhcCeee
Confidence 11 11 23688888886666664 33211111 010001100 001124567888999999863
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6e-10 Score=112.91 Aligned_cols=128 Identities=20% Similarity=0.175 Sum_probs=94.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCC-CCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDL-PFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~-~~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+.. .+++++++|+.+. ....++||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999886 345799999999999999988532 3588999998542 11145799999842
Q ss_pred -----------cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 184 -----------SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 184 -----------~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+.....+...++..+.++|+|||.+++...... . ..-.+.+.++|+....+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~----------------~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-F----------------KMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-C----------------ChhHHHHHhCCCeEEEEe
Confidence 111123445788999999999999987654221 1 112678888999987776
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
..+
T Consensus 680 ~~~ 682 (702)
T PRK11783 680 AKT 682 (702)
T ss_pred cCC
Confidence 654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.1e-10 Score=97.28 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=80.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCC-C-----CCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL-P-----FPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~-~-----~~~~~fD~ 178 (337)
++++|||||||+|..+..++...+ +.+++++|+++++++.|+++... .+++++.+|+.+. + .++++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 678999999999999998888754 57999999999999999987532 4689999999552 2 12467999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+....- +.....+..+.+.|+|||.+++.+..
T Consensus 148 VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 148 AFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred EEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9874321 34467899999999999998876543
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.1e-10 Score=100.06 Aligned_cols=124 Identities=22% Similarity=0.259 Sum_probs=91.0
Q ss_pred hhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCC
Q 019684 83 VYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKE 158 (337)
Q Consensus 83 ~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~ 158 (337)
..+.++.....+...+..++..-.+. +++.|||||||+|.++...++. +..+|+++|.|..+ +.|.+... ...
T Consensus 34 iheeML~D~VRt~aYr~~i~~n~~lf-~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~~~~i 110 (346)
T KOG1499|consen 34 IHEEMLKDSVRTLAYRNAILQNKHLF-KDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNGLEDV 110 (346)
T ss_pred HHHHHHhhhhhHHHHHHHHhcchhhc-CCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcCccce
Confidence 44455555555666666666555544 7899999999999999988887 46789999997655 66665533 234
Q ss_pred eEEEEcCCCCCCCCCCCccEEEeccccccc---CCHHHHHHHHHHhccCCCEEE
Q 019684 159 CKIVEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 159 ~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 209 (337)
++++.+.++++.++.+++|+|++-++-.++ .-.+.++-.=-+.|+|||.++
T Consensus 111 i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 111 ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 889999998876667789999996554433 234567777779999999875
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=103.28 Aligned_cols=104 Identities=19% Similarity=0.058 Sum_probs=77.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCCC----CCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLP----FPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~----~~~~~fD~i~ 180 (337)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|+++... .+++++++|+.+.. ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999998876654 345999999999999999987542 25789999986531 1245799999
Q ss_pred eccccccc---------CCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 181 SAGSIEYW---------PDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 181 ~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+.--...- .+...++..+.++|+|||.++.....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 86322111 12345667788999999999876543
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=93.30 Aligned_cols=103 Identities=22% Similarity=0.213 Sum_probs=69.6
Q ss_pred CCCEEEEEcCcccH----HHHHHHhh----CC-CCeEEEEeCCHHHHHHHHhhC----------------------C---
Q 019684 110 RNMLVVDVGGGTGF----TTLGIVKH----VD-AKNVTILDQSPHQLAKAKQKE----------------------P--- 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~----~~~~l~~~----~~-~~~v~gvD~s~~~~~~a~~~~----------------------~--- 155 (337)
+.-+|+.+||++|. ++..+.+. .+ ..+++|+|+|+.+++.|++-. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999995 33334441 11 379999999999999998510 0
Q ss_pred ------CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEc
Q 019684 156 ------LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 156 ------~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+++|...|+.+.+...+.||+|+|.+|+.++... .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 035899999997733445679999999999999765 579999999999999999863
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.1e-09 Score=93.07 Aligned_cols=137 Identities=18% Similarity=0.135 Sum_probs=99.2
Q ss_pred HHhhhhhHhhhcccCCCcchHHHHHHhccccCCCC--CCCEEEEEcCcccH----HHHHHHhhCC-----CCeEEEEeCC
Q 019684 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN--RNMLVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQS 143 (337)
Q Consensus 75 ~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~VLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s 143 (337)
.+.+.....-..++...+..+.+...++..+.... ..-+|+-+||+||. ++..+.+..+ ..+|+|+|+|
T Consensus 59 ~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId 138 (268)
T COG1352 59 AFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDID 138 (268)
T ss_pred HHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECC
Confidence 44454554455566655556666776665432211 35799999999994 5555666654 4899999999
Q ss_pred HHHHHHHHhhC----------------------CC----------CCeEEEEcCCCCCCCCCCCccEEEecccccccCCH
Q 019684 144 PHQLAKAKQKE----------------------PL----------KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP 191 (337)
Q Consensus 144 ~~~~~~a~~~~----------------------~~----------~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~ 191 (337)
..+++.|++-. .. ..|.|...|+.+.+...+.||+|+|.+|+.+++.+
T Consensus 139 ~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~ 218 (268)
T COG1352 139 LSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEE 218 (268)
T ss_pred HHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHH
Confidence 99999998421 00 23778889986544345569999999999999766
Q ss_pred --HHHHHHHHHhccCCCEEEEE
Q 019684 192 --QRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 192 --~~~l~~~~~~LkpgG~l~i~ 211 (337)
.++++.++..|+|||.|++-
T Consensus 219 ~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 219 TQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEc
Confidence 47999999999999999985
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-09 Score=94.62 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=78.2
Q ss_pred CCEEEEEcCcccH----HHHHHHhhCC----CCeEEEEeCCHHHHHHHHhhC------------------------C---
Q 019684 111 NMLVVDVGGGTGF----TTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE------------------------P--- 155 (337)
Q Consensus 111 ~~~VLDiGcG~G~----~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~------------------------~--- 155 (337)
.-+|+..||.||. ++..+.+..+ ..+|+|+|+|+.+++.|++-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999995 3344444322 378999999999999998531 0
Q ss_pred -------CCCeEEEEcCCCCCCCC-CCCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEE
Q 019684 156 -------LKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 156 -------~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...++|...|+.+.+++ .+.||+|+|.+++.|+++ ..++++++++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 02368999999764432 567999999999999965 458999999999999998775
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-09 Score=89.59 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=103.2
Q ss_pred hhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCe---------EEEEeCCHHHHHHHHhhC
Q 019684 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKN---------VTILDQSPHQLAKAKQKE 154 (337)
Q Consensus 84 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~s~~~~~~a~~~~ 154 (337)
|.....+.+..+.++..++..+... ++..|||.-||+|.++++.+....... ++|+|+++.+++.+++|+
T Consensus 3 yR~~~~~a~L~~~lA~~ll~la~~~-~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~ 81 (179)
T PF01170_consen 3 YRPFFGPAPLRPTLAAALLNLAGWR-PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL 81 (179)
T ss_dssp TTTSSSSTSS-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH
T ss_pred CcCCCCCCCCCHHHHHHHHHHhCCC-CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH
Confidence 4445566777888888888888774 788999999999999988776644444 899999999999999885
Q ss_pred CC----CCeEEEEcCCCCCCCCCCCccEEEeccccccc-CC-------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhh
Q 019684 155 PL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW-PD-------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (337)
Q Consensus 155 ~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~-~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 222 (337)
.. ..+.+.+.|+.++++.++++|.|+++--...- .+ ...+++++.++|++ ..+++....
T Consensus 82 ~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~-------- 152 (179)
T PF01170_consen 82 KAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN-------- 152 (179)
T ss_dssp HHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC--------
T ss_pred HhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC--------
Confidence 42 34789999999998777899999996444322 11 13678999999999 434333221
Q ss_pred hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+.+.++..+++..+.....
T Consensus 153 ------------~~~~~~~~~~~~~~~~~~~~~ 173 (179)
T PF01170_consen 153 ------------RELEKALGLKGWRKRKLYNGH 173 (179)
T ss_dssp ------------CCHHHHHTSTTSEEEEEEETT
T ss_pred ------------HHHHHHhcchhhceEEEEEec
Confidence 234556777777776666554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-09 Score=92.71 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=82.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--C-CeEEEEcCCCCC---CCCCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K-ECKIVEGDAEDL---PFPTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~-~~~~~~~d~~~~---~~~~~~fD~i~~~~~l 185 (337)
..+||||||.|.++..+|...|...++|||+....+..|.+.+.. - |+.+++.|+..+ -+++++.|-|+..+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 589999999999999999999999999999999888888766432 3 889999999553 2455589999975443
Q ss_pred cccCCH--------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 186 EYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 186 ~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
-|.... ..+++.+.++|+|||.|.+.+..
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 333221 27999999999999999998654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=93.67 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=95.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC-----CeEEEE-cCCCCCC----CCCCCccEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVE-GDAEDLP----FPTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~-~d~~~~~----~~~~~fD~i 179 (337)
++.+|||||||+|.+...++...++++++|+|+++.+++.|+++.... ++++.. .|..++. ..++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999999988888888777899999999999999999886543 355543 3332221 235689999
Q ss_pred EecccccccCCH-----HHHHHH----------------HHHhccCCCEEEEEcCCCCchhHhhhhhhhhc-----cCCC
Q 019684 180 VSAGSIEYWPDP-----QRGIRE----------------AYRVLKLGGKACIIGPVYPTFWLSRYFADVWM-----LFPK 233 (337)
Q Consensus 180 ~~~~~l~~~~~~-----~~~l~~----------------~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-----~~~~ 233 (337)
+|+=-++.-.+. .+-.+. ..+++.+||.+.++........ .......|. ...+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~-~~~~~~gwftsmv~kk~~ 272 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK-AFAKQVLWFTSLVSKKEN 272 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH-HHHhhCcEEEEEeeccCC
Confidence 997555432221 111222 2355668888877765433221 000011111 2247
Q ss_pred HHHHHHHHHhCCCcEEEEEEcC
Q 019684 234 EEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 234 ~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...+.+.|++.|...+.+.++.
T Consensus 273 l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 273 LPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred HHHHHHHHHHcCCceEEEEEEe
Confidence 8999999999999888887774
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-09 Score=88.63 Aligned_cols=119 Identities=13% Similarity=0.040 Sum_probs=80.9
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC-
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED- 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~- 168 (337)
.++.+.+.++..+....++.+|||+|||+|.++..++... ..+|+++|.++.+++.+++++.. .+++++.+|+.+
T Consensus 36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~ 114 (199)
T PRK10909 36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF 114 (199)
T ss_pred CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH
Confidence 3444444444433211256899999999999998755553 47999999999999999987532 368899999854
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHh--ccCCCEEEEEcC
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRV--LKLGGKACIIGP 213 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~i~~~ 213 (337)
++...++||+|++.--.. -.-...+++.+... |+|++.+++...
T Consensus 115 l~~~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 115 LAQPGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HhhcCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 222244699999865532 12234555666553 789998888754
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-09 Score=89.50 Aligned_cols=104 Identities=15% Similarity=0.231 Sum_probs=83.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEE-cCCCC-CC-CCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVE-GDAED-LP-FPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~-~d~~~-~~-~~~~~fD~i~~ 181 (337)
+.++|||||++.|..++.|+...| ..+++.+|.++++.+.|+++... +++..+. +|..+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 678999999999999999999988 78999999999999999988543 3477777 57743 22 45688999995
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
-..= .+....++.+.++|+|||.+++-+....
T Consensus 139 DadK---~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 139 DADK---ADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred eCCh---hhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 4322 2446899999999999999988655443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=94.64 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=67.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCC
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~ 175 (337)
.+.+.+++.+... ++.+|||||||+|.++..+++.. .+|+|+|+++.+++.++++....+++++++|+.++++++-.
T Consensus 29 ~i~~~i~~~l~~~-~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 29 NILDKIVDAAGPQ-PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHHhcCCC-CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcC
Confidence 4455555555543 67899999999999999999984 49999999999999999887557899999999887765422
Q ss_pred ccEEEecc
Q 019684 176 ADRYVSAG 183 (337)
Q Consensus 176 fD~i~~~~ 183 (337)
+|.|+++-
T Consensus 106 ~~~vv~Nl 113 (272)
T PRK00274 106 PLKVVANL 113 (272)
T ss_pred cceEEEeC
Confidence 57777753
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=93.60 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=84.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCC-CCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPF-PTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~-~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++.. .+++|+++|+.++.. ..+.||+|++.---
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 4689999999999999999986 68999999999999999987532 468999999976432 23569999976321
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. .....+.+....++|++.++++.... . -..++..+ .||+..++..+.
T Consensus 251 ~---G~~~~~~~~l~~~~~~~ivyvsc~p~-t---------------~~rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 251 R---GIGKELCDYLSQMAPRFILYSSCNAQ-T---------------MAKDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred C---CccHHHHHHHHHcCCCeEEEEECCcc-c---------------chhHHhhc---cCcEEEEEEEec
Confidence 1 11122333344467877776654321 1 12233333 589988887764
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-09 Score=93.63 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=105.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----C----CeEEEEcCCCC------CCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECKIVEGDAED------LPFPT 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~----~~~~~~~d~~~------~~~~~ 173 (337)
+++..++|+|||-|..++-..+. +-..++|+|+++..++.|+++... . .+.|+.+|... +++.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 57889999999999988777665 346899999999999999987532 1 26788888743 34456
Q ss_pred CCccEEEeccccccc-CCH---HHHHHHHHHhccCCCEEEEEcCCCCchhH-------hhhhhhhh--------------
Q 019684 174 DYADRYVSAGSIEYW-PDP---QRGIREAYRVLKLGGKACIIGPVYPTFWL-------SRYFADVW-------------- 228 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~-~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~~-------------- 228 (337)
.+||+|-|.+++|+. .+. ..+++++.+.|+|||+++-+-|....... ..+-.+++
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~ 274 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDV 274 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCC
Confidence 669999999999975 332 46899999999999999887654321100 00111110
Q ss_pred ------------------ccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 229 ------------------MLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 229 ------------------~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
..+..-..+.+++++.|++.|.+..+..
T Consensus 275 p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~d 320 (389)
T KOG1975|consen 275 PPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFAD 320 (389)
T ss_pred CCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHH
Confidence 0012357888999999999998887753
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=96.91 Aligned_cols=137 Identities=24% Similarity=0.324 Sum_probs=93.0
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC---
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL--- 169 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~--- 169 (337)
.+...++..+.. .++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++.. .+++++.+|+.+.
T Consensus 279 ~l~~~~~~~l~~-~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 279 KLVDRALEALEL-QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHhcc-CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH
Confidence 344444444433 35689999999999999999987 56899999999999999987532 4789999998542
Q ss_pred -CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 170 -PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 170 -~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+..+++||+|++.---. .-...+++.+.+ ++|++.++++.. +. |...-...|.+.||+.
T Consensus 356 ~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~--p~---------------tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCN--PA---------------TLARDLEFLCKEGYGI 415 (431)
T ss_pred HHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCC--HH---------------HHHHHHHHHHHCCeeE
Confidence 23345799999643211 112456666554 889887776532 11 1112234567789988
Q ss_pred EEEEEcC
Q 019684 249 VQLKRIG 255 (337)
Q Consensus 249 v~~~~~~ 255 (337)
..+..+.
T Consensus 416 ~~~~~~D 422 (431)
T TIGR00479 416 TWVQPVD 422 (431)
T ss_pred EEEEEec
Confidence 7777654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-08 Score=88.06 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=90.3
Q ss_pred hhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 019684 71 KEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150 (337)
Q Consensus 71 ~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a 150 (337)
..-+.||++....-+.+... ..+..+.+.++...... .++.|||+|||+|.++...+.. +..+|++++- .+|.+.|
T Consensus 140 ~~YF~~YG~L~~QQNMmQDY-VRTgTY~~Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA-S~MAqyA 215 (517)
T KOG1500|consen 140 SQYFQFYGYLSQQQNMMQDY-VRTGTYQRAILENHSDF-QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA-SEMAQYA 215 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhccccc-CCcEEEEecCCccHHHHHHHHh-CcceEEEEeh-hHHHHHH
Confidence 33456777776655443221 22233334444433222 6889999999999998877766 5678999998 5788888
Q ss_pred HhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEE
Q 019684 151 KQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 151 ~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i 210 (337)
++.... .++.++.+-++++.+++ +.|+|++--+-..+-+. -+..-..++.|||.|.++-
T Consensus 216 ~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 216 RKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred HHHHhcCCccceEEEccCccccccCch-hccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 876543 45889999999887765 49999985433323232 2344556799999999864
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-08 Score=83.45 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=93.0
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC---CCCCccEEEeccccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAGSIEYW 188 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~---~~~~fD~i~~~~~l~~~ 188 (337)
.++|||||=+...... ..+-.+|+.||+++. .-.+.+.|+.+.|. ++++||+|.++-||.++
T Consensus 53 lrlLEVGals~~N~~s---~~~~fdvt~IDLns~------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred ceEEeecccCCCCccc---ccCceeeEEeecCCC------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 6999999976554332 234578999999651 12356778866554 46789999999999999
Q ss_pred CCHH---HHHHHHHHhccCCCE-----EEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 189 PDPQ---RGIREAYRVLKLGGK-----ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 189 ~~~~---~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
|++. +.++.+++.|+|+|. |+++-|...- ....+.+.+.|.++|+..||+.++.+....
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---------~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---------TNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---------hcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 9986 699999999999999 8888664321 112466889999999999999999977763
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-08 Score=85.25 Aligned_cols=141 Identities=21% Similarity=0.128 Sum_probs=102.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---------------------------------C-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------------------------P- 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---------------------------------~- 155 (337)
...+||-.|||.|.++..++.. +..+.|.|.|--|+-...-.+ .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4679999999999999999999 899999999988864433100 0
Q ss_pred ---------CCCeEEEEcCCCCCCCCC---CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh
Q 019684 156 ---------LKECKIVEGDAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (337)
Q Consensus 156 ---------~~~~~~~~~d~~~~~~~~---~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 223 (337)
..++....+|+.+.-..+ ++||+|++.+.+.-.++.-..++.|.++|||||..+=..|..-......
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~- 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS- 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC-
Confidence 023556677776544333 6899999998888888888999999999999997766655432211000
Q ss_pred hhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
...-...-.+.+++..++++.||+++..+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000001235789999999999999988776
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=90.48 Aligned_cols=86 Identities=26% Similarity=0.331 Sum_probs=69.2
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~ 173 (337)
..+.+.+++.+... ++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++++|+.+++++
T Consensus 15 ~~~~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 15 DRVVDRIVEYAEDT-DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP- 90 (258)
T ss_pred HHHHHHHHHhcCCC-CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch-
Confidence 34455555555543 6789999999999999999998 5799999999999999998764 36799999999887754
Q ss_pred CCccEEEecccc
Q 019684 174 DYADRYVSAGSI 185 (337)
Q Consensus 174 ~~fD~i~~~~~l 185 (337)
.||.|+++--.
T Consensus 91 -~~d~Vv~NlPy 101 (258)
T PRK14896 91 -EFNKVVSNLPY 101 (258)
T ss_pred -hceEEEEcCCc
Confidence 48999886554
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=86.03 Aligned_cols=105 Identities=20% Similarity=0.165 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCC-C--C-CCCCCccE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAED-L--P-FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~-~--~-~~~~~fD~ 178 (337)
.++.+|||+|||+|..++.++...+..+|+..|.++ .++..+.+.. ..++.+...|..+ . . ....+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 378999999999999999988886678999999988 8888877643 2456777777643 1 1 23457999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+...+++.-.....+++-+.++|+|+|.+++....
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999998777788999999999999997776543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=83.55 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=85.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.+.+|+|+|||||.+++..+-. +..+|+++|+++++++.+++|..+ .++.|+++|+.+.. ..+|.++.+--+..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 6789999999999999987766 457999999999999999998653 46899999998864 56888887644432
Q ss_pred c---CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 188 W---PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 188 ~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
. .| ..++..+.+.- .++.+-+ ...+.+-+.+..+++|+++......
T Consensus 121 ~~rhaD-r~Fl~~Ale~s----~vVYsiH----------------~a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 121 QRRHAD-RPFLLKALEIS----DVVYSIH----------------KAGSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred ccccCC-HHHHHHHHHhh----heEEEee----------------ccccHHHHHHHHHhcCCeEEEEEEE
Confidence 2 23 23444444433 1111111 1225677888999999998777544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.9e-09 Score=88.20 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=81.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CC-----CCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP-----FPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~-----~~~~~fD~ 178 (337)
+.++||||||++|..+..+++..| +.+|+.+|++++..+.|+++.. ..+++++.+|+.+ ++ ...++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 568999999999999999998876 5899999999999999987643 2569999999854 22 11357999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
|+.-..= .+....++.+.++|+|||.+++-+....
T Consensus 125 VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 125 VFIDADK---RNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred EEEcccc---cchhhHHHHHhhhccCCeEEEEcccccc
Confidence 9975532 3456788899999999999998765443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.3e-08 Score=84.92 Aligned_cols=134 Identities=17% Similarity=0.075 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHH-HHhhCCCCCe-EEEEcCCCCC-----CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-AKQKEPLKEC-KIVEGDAEDL-----PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~-~~~~~d~~~~-----~~~~~~fD~i~~ 181 (337)
.++.+|||+|||+|.++..+++. +..+|+|+|+++.|+.. .+++ +++ .+...|+... +..-..+|++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 36789999999999999999987 45689999999988876 3322 232 2333444422 211124665554
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEE-EcCCCCchhHh--h--hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACI-IGPVYPTFWLS--R--YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i-~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+.. .++..+.+.|+| |.+++ ..|-++..... . ...+.-.+..-.+.+...+.+.||++..+....
T Consensus 150 S~~--------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 150 SLI--------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred ehH--------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 432 257889999999 66554 33322111100 0 000000011234667778888999987776653
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=90.53 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC-CC-C----CCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LP-F----PTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~-~~-~----~~~~fD~ 178 (337)
+.++||||||++|..++.++...| +.+++.+|.+++..+.|+++... .+++++.+|+.+ ++ + .+++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 578999999999999999998764 57899999999999999987532 468999999844 32 1 1357999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+.-.- -.+....++.+.++|+|||.+++-+..
T Consensus 198 VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 198 AFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 996542 124567899999999999999876543
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=83.48 Aligned_cols=97 Identities=24% Similarity=0.254 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCC-------------CCeEEEEcCCCCCCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPL-------------KECKIVEGDAEDLPFPT 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~-------------~~~~~~~~d~~~~~~~~ 173 (337)
.+|.+.||+|+|+|.++..++... ++..++|||.-++.++.+++++.. .++.++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 489999999999999999888665 345569999999999999987532 35788999998877778
Q ss_pred CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
.+||.|++... ..+..+++...|+|||.+++-
T Consensus 161 a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAA------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccC------ccccHHHHHHhhccCCeEEEe
Confidence 89999998733 334567788899999999874
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-08 Score=96.80 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=82.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~--~~~~~~fD~i~~~~~ 184 (337)
....+||||||.|.++..+|..+|...++|+|++...+..+.++.. -.|+.++..|+..+ -++++++|.|+..+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 5678999999999999999999999999999999987777665532 25788888887432 267788999997654
Q ss_pred ccccCCH--------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
=-|.... ..+++.+.++|||||.+.+.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 4433221 27999999999999999988654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.7e-09 Score=97.97 Aligned_cols=99 Identities=22% Similarity=0.271 Sum_probs=74.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEE---eCCHHHHHHHHhhCCCCCeEEEEcC--CCCCCCCCCCccEEEeccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTIL---DQSPHQLAKAKQKEPLKECKIVEGD--AEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~d--~~~~~~~~~~fD~i~~~~~l~ 186 (337)
..+||||||+|.++..|.++ +..++.+ |..+.+++.|.++.. -...+- ...+||++++||+|+|..++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRGv----pa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERGV----PAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcCc----chhhhhhccccccCCccchhhhhcccccc
Confidence 47899999999999999998 5554443 444567777776532 222222 367899999999999998887
Q ss_pred ccCCH-HHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 187 YWPDP-QRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 187 ~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
.+... ..+|-++.|+|+|||+++++.+...
T Consensus 193 ~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cchhcccceeehhhhhhccCceEEecCCccc
Confidence 66433 4689999999999999999876433
|
; GO: 0008168 methyltransferase activity |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.4e-08 Score=88.18 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=78.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
..++||.||+|.|..+..+.+..+..+++.+|+++.+++.|++... .++++++.+|+.. +...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999998887556789999999999999998753 3679999999854 3334568999998
Q ss_pred ccccccc---CC----HHHHHH-HHHHhccCCCEEEEE
Q 019684 182 AGSIEYW---PD----PQRGIR-EAYRVLKLGGKACII 211 (337)
Q Consensus 182 ~~~l~~~---~~----~~~~l~-~~~~~LkpgG~l~i~ 211 (337)
... ... +- -.++++ .+.+.|+|||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 631 111 00 136777 899999999998775
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=83.35 Aligned_cols=84 Identities=24% Similarity=0.356 Sum_probs=65.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~ 173 (337)
..+...+++.+... ++.+|||||||+|.++..+++.. .+++++|+++.+++.++++.. ..+++++.+|+.+.++.
T Consensus 15 ~~i~~~i~~~~~~~-~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 15 ESVIQKIVEAANVL-EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHHhcCCC-CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh-
Confidence 34555556555543 67899999999999999999984 579999999999999998754 36799999999887764
Q ss_pred CCcc---EEEecc
Q 019684 174 DYAD---RYVSAG 183 (337)
Q Consensus 174 ~~fD---~i~~~~ 183 (337)
.+| .|+++-
T Consensus 91 -~~d~~~~vvsNl 102 (253)
T TIGR00755 91 -DFPKQLKVVSNL 102 (253)
T ss_pred -HcCCcceEEEcC
Confidence 366 666543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=77.98 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=91.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHH---HHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL---AKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~---~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.+++|||+|.|.-++.++-.+|..+++.+|.+..-+ +.+.+.+.-.|++++++.+++ +....+||+|++..+-
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 389999999999999999999999999999998544 444445555789999999988 5556789999998654
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....+++-+...+++||.+++.--..... ..++....++..|.+...+..+.
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~KG~~~~~--------------El~~~~~~~~~~~~~~~~v~~~~ 177 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYKGPDAEE--------------ELEEAKKAWKKLGLKVLSVPEFE 177 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEESS--HH--------------HHHTHHHHHHCCCEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEcCCChHH--------------HHHHHHhHHHHhCCEEeeecccc
Confidence 56788999999999999998764321111 12345566777788777776653
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-08 Score=88.27 Aligned_cols=90 Identities=26% Similarity=0.338 Sum_probs=68.9
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~ 170 (337)
..+...+++..... ++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.. ..+++++.+|+.+.+
T Consensus 22 ~~i~~~Iv~~~~~~-~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 22 PLVLDKIVEKAAIK-PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHHhcCCC-CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 34555555555553 7789999999999999999987 5789999999999999998753 357999999997755
Q ss_pred CCCCCccEEEecccccccCC
Q 019684 171 FPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~ 190 (337)
+ ..||.|+++-- .++..
T Consensus 99 ~--~~~d~VvaNlP-Y~Ist 115 (294)
T PTZ00338 99 F--PYFDVCVANVP-YQISS 115 (294)
T ss_pred c--cccCEEEecCC-cccCc
Confidence 4 35898887543 34444
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=88.98 Aligned_cols=122 Identities=9% Similarity=-0.018 Sum_probs=85.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|++++.. .+++|+.+|+.+.. ...++||+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4579999999999999999976 67999999999999999987532 36899999986532 112459999875332
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.. -...+++.+. .++|++.++++.. +.. + ..++..+ .||++.++..+.
T Consensus 311 ~G--~~~~~l~~l~-~~~p~~ivyvsc~--p~T-l-------------aRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 RG--IGKELCDYLS-QMAPKFILYSSCN--AQT-M-------------AKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred CC--CcHHHHHHHH-hcCCCeEEEEEeC--HHH-H-------------HHHHHHh---cCceEEEEEEec
Confidence 11 1235555554 4789888887642 111 1 1223333 699988887765
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-07 Score=75.02 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=91.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
..-+||||||+|..+..++... |+..+.++|++|.+++...+.+.. .+++.++.|+.+ ....++.|+++.+--..-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcCc
Confidence 5779999999999999988875 567899999999999887765433 346788888855 223378999887422211
Q ss_pred cC-----------------C----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 188 WP-----------------D----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 188 ~~-----------------~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
-+ + .++++.++-..|.|.|.+++.....+ .++++.+.++.-||
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------KPKEILKILEKKGY 186 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------CHHHHHHHHhhccc
Confidence 10 0 13677778888999999998765432 35777889999999
Q ss_pred cEEEEEE
Q 019684 247 KDVQLKR 253 (337)
Q Consensus 247 ~~v~~~~ 253 (337)
.......
T Consensus 187 ~~~~~~~ 193 (209)
T KOG3191|consen 187 GVRIAMQ 193 (209)
T ss_pred ceeEEEE
Confidence 7655433
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.6e-07 Score=72.11 Aligned_cols=117 Identities=22% Similarity=0.294 Sum_probs=92.3
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--- 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--- 170 (337)
..+++........ ..+.-|||+|.|||.++..+.++ .+...+++++.|++......+... .+.++.+|+.++.
T Consensus 34 s~lA~~M~s~I~p-esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--~~~ii~gda~~l~~~l 110 (194)
T COG3963 34 SILARKMASVIDP-ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHHHHhccCc-ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--CccccccchhhHHHHH
Confidence 3344455555444 36789999999999999998877 345789999999999999988765 4558899987654
Q ss_pred --CCCCCccEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCC
Q 019684 171 --FPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 171 --~~~~~fD~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
..+..||.|+|.--+-.++-.. ++++++...|.+||.++.....
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 4567799999988777776543 6899999999999999887554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=73.97 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCCEEEEEcCcccH-HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~ 183 (337)
++.+|||||||+|. .+..|++. +.+|+++|+++..++.++++ .+.++.+|+.+..+. -+.+|+|++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----GLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 56899999999996 88888876 88999999999999999865 468999999765432 24599999744
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=88.44 Aligned_cols=104 Identities=18% Similarity=0.091 Sum_probs=82.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCC-C---CCCCCccEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDL-P---FPTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~-~---~~~~~fD~i 179 (337)
+|++|||+-|=||.++...+.. |+ +|+.||.|...++.|++|... ..+.|+++|+.+. . -...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4899999999999999998876 66 999999999999999998643 3368999998553 2 233489999
Q ss_pred Eec---------ccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 180 VSA---------GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 180 ~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
++- ....-..+...++..+.++|+|||.+++.+...
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 982 112222455689999999999999999887643
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-07 Score=78.74 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=71.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC-CC-C-CC-CCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LP-F-PT-DYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~-~~-~-~~-~~fD~i~~ 181 (337)
.+.+|||++||+|.++..++.+. ..+|+++|.++.+++.++++... .+++++.+|+.+ +. . .. ..||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999882 35899999999999999887532 357899999843 22 1 12 23787776
Q ss_pred cccccccCCHHHHHHHHHH--hccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYR--VLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 213 (337)
.--.. ......++..+.+ .|+++|.+++...
T Consensus 128 DPPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 43332 2233455555544 6888888777644
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.7e-08 Score=85.31 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=88.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-------------------------------CC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------------------------------KE 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------------------------------~~ 158 (337)
++.++||||||+-..-..-+..+ --+++..|.++...+..++-+.. ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 57799999999865532222221 34799999998877655431110 01
Q ss_pred e-EEEEcCCCCC-CCCC-----CCccEEEeccccccc-CCH---HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh
Q 019684 159 C-KIVEGDAEDL-PFPT-----DYADRYVSAGSIEYW-PDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227 (337)
Q Consensus 159 ~-~~~~~d~~~~-~~~~-----~~fD~i~~~~~l~~~-~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 227 (337)
+ .++.+|+.+. |+.. .+||+|++..+++.. +|. .+.++++.++|||||.|++............ -...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG-~~~F 213 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG-GHKF 213 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET-TEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC-CEec
Confidence 2 3677899653 3332 259999999999876 344 4789999999999999999865433221100 0011
Q ss_pred hccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 228 WMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 228 ~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
.....+.+.+++.|+++||++++..
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1234588999999999999998888
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.1e-08 Score=89.53 Aligned_cols=143 Identities=22% Similarity=0.235 Sum_probs=105.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++..++|+|||.|.....++.. ....++|+|.++..+..+..... .....++.+|+.+.|++++.||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 35678999999999999988776 57899999999998888775432 23456688999999999999999999999
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch------hHhhhh-----hhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRYF-----ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
.+|.++...++++++++++|||+++..+...... ...... .+............+++...||..+.+.
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~ 266 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLE 266 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhhc
Confidence 9999999999999999999999998864322110 000000 0111111233456678888888877643
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=83.14 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=79.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CCC------CCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPF------PTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~------~~~~fD 177 (337)
+.++|||||+++|..++.++... ++.+++.+|.+++..+.|+++.. ..+++++.+|+.+ ++- ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 56899999999999999999876 46899999999999999987743 3579999999844 221 135899
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|+.-.-= ......++.+.+.|+|||.+++-+.
T Consensus 159 ~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 159 FIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred EEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 99965431 2345788888999999999887544
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.1e-08 Score=84.80 Aligned_cols=96 Identities=26% Similarity=0.268 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe-EEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-KIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+.+..++|+|||.|..+. ..|.+.++|+|++...+..+++. +. ....+|+..+|+.+.+||.+++..++||
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC----CCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 368899999999998743 23778899999999998888753 33 5778899999999999999999999999
Q ss_pred cCCH---HHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDP---QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~---~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+... .++++++.|.|+|||...+..
T Consensus 116 lsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 9765 479999999999999977753
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.2e-07 Score=77.11 Aligned_cols=132 Identities=19% Similarity=0.265 Sum_probs=100.5
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCC--CC
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP--TD 174 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~--~~ 174 (337)
+..+.+ .+|.+|||-|+|+|.++..+++.. |-.+++.+|+.....+.|.+... ..++++..-|+....|. +.
T Consensus 98 ~~~L~i-~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 98 LSMLEI-RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHhcC-CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 344444 489999999999999999999886 66899999998888877776533 36799999999665443 46
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCC-EEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGG-KACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
.+|.|++ .++.|...+-.+..+||.+| +++-..++.+. .+.-.+.|+++||..++..+
T Consensus 177 ~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPCIEQ----------------vqrtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 177 KADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQ----------------VQRTCEALRSLGFIEIETVE 235 (314)
T ss_pred ccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHHHHH----------------HHHHHHHHHhCCCceEEEEE
Confidence 7898885 57888889999999999877 66655554332 13445789999998887766
Q ss_pred cC
Q 019684 254 IG 255 (337)
Q Consensus 254 ~~ 255 (337)
+-
T Consensus 236 v~ 237 (314)
T KOG2915|consen 236 VL 237 (314)
T ss_pred ee
Confidence 54
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.6e-07 Score=79.11 Aligned_cols=123 Identities=13% Similarity=-0.046 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
+..++||=||.|.|..++.+.+. + .+|+-||+++.+++.+++.. ..++++++.. +.+ ...++||+|+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence 46799999999999999999998 4 49999999999999999843 3466776652 221 12357999997
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
-.. ....+++.+.+.|+|||.++......- . ... ....+.+.+++ .|..+.....
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~-~-~~~----------~~~~i~~~l~~-~F~~v~~y~~ 200 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFISVAKHPL-L-EHV----------SMQNALKNMGD-FFSIAMPFVA 200 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEECCCCcc-c-CHH----------HHHHHHHHHHh-hCCceEEEEe
Confidence 643 346788999999999999988643211 0 000 12344456666 6886655444
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-07 Score=79.95 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=81.2
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-PFPTDYADRYVSA 182 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~~~~~~fD~i~~~ 182 (337)
.++||-||.|.|..++.+.+..+..+++.+|+++..++.+++... .++++.+.+|..+. .-...+||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 379999999999999999999777899999999999999998643 36788999998543 2223379999985
Q ss_pred ccccccC----CHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWP----DPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..=.--+ .-..+++.+++.|+++|.++...
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4433111 11589999999999999999873
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-08 Score=82.12 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=100.9
Q ss_pred hHHHHHHhcccc--CCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC
Q 019684 94 TEDMRDDALEPA--DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF 171 (337)
Q Consensus 94 ~~~~~~~~l~~~--~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~ 171 (337)
.++..+.++... .....+.++||+|.|.|..+..++..+ -+|++.++|..|..+.+++. -.+ ....++.-
T Consensus 94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~----ynV--l~~~ew~~ 165 (288)
T KOG3987|consen 94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKN----YNV--LTEIEWLQ 165 (288)
T ss_pred cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcC----Cce--eeehhhhh
Confidence 344444444433 122345799999999999999988874 47999999999999888542 111 12222222
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccC-CCEEEEE---------cCCCCchh--HhhhhhhhhccC-CCHHHHH
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKL-GGKACII---------GPVYPTFW--LSRYFADVWMLF-PKEEEYI 238 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~l~i~---------~~~~~~~~--~~~~~~~~~~~~-~~~~~~~ 238 (337)
.+-+||+|.|.+++.-..++-+.++.++.+|+| +|++++. +.+....+ ...........+ .....+.
T Consensus 166 t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~ 245 (288)
T KOG3987|consen 166 TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFM 245 (288)
T ss_pred cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHH
Confidence 345699999999999999999999999999999 8988764 11111111 111111111111 1234677
Q ss_pred HHHHhCCCcEEEEEEcC
Q 019684 239 EWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 239 ~~l~~aGF~~v~~~~~~ 255 (337)
++|+++||.+...+...
T Consensus 246 e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 246 ELLRNCGYRVEAWTRLP 262 (288)
T ss_pred HHHHhcCchhhhhhcCC
Confidence 89999999987766654
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-07 Score=86.94 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=77.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+.+|||++||+|..++.++...+..+|+++|+++.+++.+++|+.. .++++..+|+..+....+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 4689999999999999998876556899999999999999988643 345688899865322145699999753 2
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+..++....+.+++||.++++.
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 345678888888899999999983
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6e-07 Score=86.08 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=68.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhC----CCCeEEEEeCCHHHHHHHHh----hCCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQ----KEPLKECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~----~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
+..|||||||+|.++...++.. ...+|++||-|+.+....++ +.-..+++++.+|++++..+. ++|+|||-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 5789999999999987665542 24799999999987765533 333367999999999987655 69999984
Q ss_pred ccccccC--CHHHHHHHHHHhccCCCEEE
Q 019684 183 GSIEYWP--DPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 183 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~ 209 (337)
..=.... -..+.+....+.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3322221 22467888999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=82.47 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEe--
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVS-- 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~-- 181 (337)
+++.+|||+++|+|.-+..+++..+ ...++++|+++..++..++++.. .++.+...|...+. ...+.||.|+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 4789999999999999999998864 36899999999999888877543 56777888876543 22356999995
Q ss_pred --c--ccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCc
Q 019684 182 --A--GSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPT 217 (337)
Q Consensus 182 --~--~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~ 217 (337)
+ .++..-++. .++|.++.+.|||||+|+.+++....
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 2 222221211 36899999999999999888876543
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-07 Score=78.88 Aligned_cols=96 Identities=25% Similarity=0.279 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++..|||..||-|.+++.+++..++..|+++|++|..++..+++.. ..++..+.+|+.++.. .+.||.|++..-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 47899999999999999999996557899999999999988887643 3458899999977654 678999987542
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEE
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~ 209 (337)
- .-..++..+.+++++||.+.
T Consensus 179 ~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 E----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEE
T ss_pred H----HHHHHHHHHHHHhcCCcEEE
Confidence 2 22358888999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-06 Score=77.57 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=82.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCCC-CeEE--EEcCC-C-CCCCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLK-ECKI--VEGDA-E-DLPFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~--~~~d~-~-~~~~~~~~fD~i~~~~ 183 (337)
.+.+|||+|||+|.-+..+.+.++ -.+++++|.|+.|++.++...... +... ...+. . ..++ ...|+|++.+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEeh
Confidence 457999999999988777766665 357999999999999988764321 1110 01111 1 1122 2349999999
Q ss_pred cccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 184 SIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 184 ~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+|..+++. ..+++++.+.+.+ .|+++|+..+... ....+.++.|.+.|+.++
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf------------~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF------------RRIAEARDQLLEKGAHVV 164 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH------------HHHHHHHHHHhhCCCceE
Confidence 99999873 2567777676665 9999998765431 123455666666666643
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.6e-06 Score=68.06 Aligned_cols=101 Identities=29% Similarity=0.320 Sum_probs=74.3
Q ss_pred EEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCC--CC-eEEEEcCCCC--CCCCC-CCccEEEeccccc
Q 019684 114 VVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL--KE-CKIVEGDAED--LPFPT-DYADRYVSAGSIE 186 (337)
Q Consensus 114 VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~--~~-~~~~~~d~~~--~~~~~-~~fD~i~~~~~l~ 186 (337)
++|+|||+|... .+....+. ..++|+|+++.++..++..... .+ +.+...|... .++.+ ..||++ ......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 33333222 4899999999999886654321 11 5788888765 67776 489999 554444
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+..+....+.++.+.++|+|.+++......
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444488899999999999999998866543
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-07 Score=80.42 Aligned_cols=104 Identities=22% Similarity=0.222 Sum_probs=74.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCC-CC--CCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAED-LP--FPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~-~~--~~~~~fD~i~~ 181 (337)
++++|||+-|=||.++...+.. +..+|+.||.|..+++.+++|.. ..+++|+..|+.+ +. -..++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 6789999999999999987765 33589999999999999998843 2468899999854 21 12458999998
Q ss_pred c------ccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 182 A------GSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 182 ~------~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
- ....-..+..+++..+.++|+|||.|++....
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2 11111234567899999999999999876553
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.9e-07 Score=78.84 Aligned_cols=103 Identities=21% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCC-CccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTD-YADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~-~fD~i~ 180 (337)
+.++||-||.|.|..+..+.+..+..+++.+|+++.+++.|++... .++++++.+|... +.-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 6789999999999999999887556899999999999999997532 3689999999843 222233 799999
Q ss_pred ecccccccCC----HHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.-..-...+. -..+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8433322221 2589999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=75.47 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=74.3
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~ 173 (337)
....+.+++.+... +++.|||||+|.|.++..|++. +.+|+++++++.+++..++... ..+++.+.+|+...+++.
T Consensus 16 ~~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 16 KNVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 44567777777775 5899999999999999999999 7789999999999999998864 578999999998877664
Q ss_pred C-CccEEEecccccccCC
Q 019684 174 D-YADRYVSAGSIEYWPD 190 (337)
Q Consensus 174 ~-~fD~i~~~~~l~~~~~ 190 (337)
- .++.|+++--. ++..
T Consensus 93 l~~~~~vVaNlPY-~Iss 109 (259)
T COG0030 93 LAQPYKVVANLPY-NISS 109 (259)
T ss_pred hcCCCEEEEcCCC-cccH
Confidence 2 47888875433 3443
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.1e-07 Score=80.00 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=67.9
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCC--CC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP--FP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~--~~ 172 (337)
+..++++.+.. .++..+||.+||.|.++..+++.++ ..+|+|+|.++.+++.+++++.. .++.++++|+.++. ..
T Consensus 7 ll~Evl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 7 LLDEVVDALAI-KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred cHHHHHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 44455555544 3678999999999999999999975 68999999999999999987643 57999999997643 12
Q ss_pred C--CCccEEEeccc
Q 019684 173 T--DYADRYVSAGS 184 (337)
Q Consensus 173 ~--~~fD~i~~~~~ 184 (337)
+ .++|.|++...
T Consensus 86 ~~~~~vDgIl~DLG 99 (296)
T PRK00050 86 EGLGKVDGILLDLG 99 (296)
T ss_pred cCCCccCEEEECCC
Confidence 2 27999998433
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.3e-06 Score=70.84 Aligned_cols=129 Identities=19% Similarity=0.170 Sum_probs=96.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHH---HHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~---~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+.+++|||+|.|.-++.++-.+|+.+|+-+|.... .++.+.+.+.-+|++++++.+++.......||+|.++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999998889999999999864 4555556666688999999998876322229999988644
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
+...+.+-+...+|+||.+++.-... . ..-..+.+......||.+..+......
T Consensus 146 --~L~~l~e~~~pllk~~g~~~~~k~~~-------~-------~~e~~e~~~a~~~~~~~~~~~~~~~~p 199 (215)
T COG0357 146 --SLNVLLELCLPLLKVGGGFLAYKGLA-------G-------KDELPEAEKAILPLGGQVEKVFSLTVP 199 (215)
T ss_pred --chHHHHHHHHHhcccCCcchhhhHHh-------h-------hhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence 45667788899999999876431110 0 012356677888889999888887633
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=8e-06 Score=76.40 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=83.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~ 171 (337)
+.+...+++.... .+.+|||++||+|.++..+++.. .+|+|+|+++.+++.+++++.. .+++++.+|+.+.-.
T Consensus 184 ~~l~~~v~~~~~~--~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 184 IKMLEWACEVTQG--SKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHHHHhhc--CCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 3344444444432 23479999999999999998883 5999999999999999988543 368899999865211
Q ss_pred -----------C-----CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHH
Q 019684 172 -----------P-----TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235 (337)
Q Consensus 172 -----------~-----~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
. ...||+|+..=-- ..-...+++.+.+ |++.++++... .. + ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR--~G~~~~~l~~l~~---~~~ivYvsC~p-~t--l-------------aR 318 (353)
T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFVDPPR--AGLDPDTCKLVQA---YERILYISCNP-ET--L-------------KA 318 (353)
T ss_pred HHhhccccccccccccccCCCCEEEECCCC--CCCcHHHHHHHHc---CCcEEEEEcCH-HH--H-------------HH
Confidence 0 1137988863221 1111345555543 77777776421 11 0 12
Q ss_pred HHHHHHHhCCCcEEEEEEcC
Q 019684 236 EYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~~~~~ 255 (337)
++..+. .||++..+..+.
T Consensus 319 Dl~~L~--~~Y~l~~v~~~D 336 (353)
T TIGR02143 319 NLEQLS--ETHRVERFALFD 336 (353)
T ss_pred HHHHHh--cCcEEEEEEEcc
Confidence 333333 348888887765
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.7e-06 Score=76.79 Aligned_cols=134 Identities=15% Similarity=0.066 Sum_probs=85.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC-C
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL-P 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~-~ 170 (337)
+.+.+.+...... .+.+|||++||+|.++..+++. ..+|+|+|.++.+++.+++++.. .+++++.+|+.+. +
T Consensus 193 e~l~~~v~~~~~~--~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 193 EKMLEWALDATKG--SKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHhhc--CCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 3444444443322 2357999999999999998887 45899999999999999988532 3688999998552 1
Q ss_pred -CC--------------CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHH
Q 019684 171 -FP--------------TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE 235 (337)
Q Consensus 171 -~~--------------~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
+. ..+||+|+..--- ..-..++++.+.+ |++.++++... .. + ..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC~p-~t--l-------------ar 327 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISCNP-ET--L-------------CE 327 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEeCH-HH--H-------------HH
Confidence 10 1258999863221 1112345555544 67777766321 11 0 23
Q ss_pred HHHHHHHhCCCcEEEEEEcC
Q 019684 236 EYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~~~~~ 255 (337)
++..+. + ||++.++..+.
T Consensus 328 Dl~~L~-~-gY~l~~v~~~D 345 (362)
T PRK05031 328 NLETLS-Q-THKVERFALFD 345 (362)
T ss_pred HHHHHc-C-CcEEEEEEEcc
Confidence 344343 3 99988887765
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7e-07 Score=70.52 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=62.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.|++++|+|||.|-+....... ..-.|+|+|++|++++.+.+|+.. -++++.++|+.++-+..+.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 6899999999999998554433 446799999999999999988754 457899999988777778999999865544
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.3e-06 Score=73.30 Aligned_cols=137 Identities=19% Similarity=0.200 Sum_probs=82.1
Q ss_pred CEEEEEcCcc--cHHHHHHHh-hCCCCeEEEEeCCHHHHHHHHhhCCC-CC--eEEEEcCCCCCC--CC----CCCcc--
Q 019684 112 MLVVDVGGGT--GFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL-KE--CKIVEGDAEDLP--FP----TDYAD-- 177 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~-~~--~~~~~~d~~~~~--~~----~~~fD-- 177 (337)
...||||||- -...-.+++ ..|.++|+-+|.+|..+..++..+.. ++ ..++.+|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5799999993 334444544 36899999999999999999987543 45 889999997632 11 12233
Q ss_pred ---EEEecccccccCC---HHHHHHHHHHhccCCCEEEEEcCCCCchh-----Hhhhhhhh--hccCCCHHHHHHHHHhC
Q 019684 178 ---RYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACIIGPVYPTFW-----LSRYFADV--WMLFPKEEEYIEWFQKA 244 (337)
Q Consensus 178 ---~i~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~l~~a 244 (337)
.+++..++||++| +..+++.++..|.||.+|.++........ ....+... ...+.+.+++..+|.
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~-- 227 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD-- 227 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--
Confidence 6778899999965 57899999999999999999865443211 11111111 123568889988888
Q ss_pred CCcEEE
Q 019684 245 GFKDVQ 250 (337)
Q Consensus 245 GF~~v~ 250 (337)
||+.++
T Consensus 228 g~elve 233 (267)
T PF04672_consen 228 GLELVE 233 (267)
T ss_dssp TSEE-T
T ss_pred CCccCC
Confidence 888654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.4e-07 Score=72.48 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=102.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC------CeEEEEcCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECKIVEGDAE 167 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~d~~ 167 (337)
+.+...+++..... .+.+|||+|.| +|.-++.++...|...|...|-+++.++..++....+ .+....-+..
T Consensus 15 eala~~~l~~~n~~-rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~ 93 (201)
T KOG3201|consen 15 EALAWTILRDPNKI-RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW 93 (201)
T ss_pred HHHHHHHHhchhHH-hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh
Confidence 34445555544332 57899999999 5666777777788899999999999998887643211 1111111111
Q ss_pred --CCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC
Q 019684 168 --DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 168 --~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 245 (337)
.......+||.|++..++..-.......+.|.++|+|.|.-++..|.... +.+.+.+.....|
T Consensus 94 ~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~---------------sL~kF~de~~~~g 158 (201)
T KOG3201|consen 94 GAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ---------------SLQKFLDEVGTVG 158 (201)
T ss_pred hhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc---------------hHHHHHHHHHhce
Confidence 11123458999999999875555568999999999999998887765432 5677888999999
Q ss_pred CcEEEEEEcCc
Q 019684 246 FKDVQLKRIGP 256 (337)
Q Consensus 246 F~~v~~~~~~~ 256 (337)
|.+.-.+.+..
T Consensus 159 f~v~l~enyde 169 (201)
T KOG3201|consen 159 FTVCLEENYDE 169 (201)
T ss_pred eEEEecccHhH
Confidence 99887777663
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.6e-06 Score=84.25 Aligned_cols=130 Identities=15% Similarity=0.096 Sum_probs=91.5
Q ss_pred hhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC----C--------------------------
Q 019684 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV----D-------------------------- 133 (337)
Q Consensus 84 y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~----~-------------------------- 133 (337)
|.....+.+..+.++..++.......++..++|.+||+|.+++..+... |
T Consensus 164 yr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~ 243 (702)
T PRK11783 164 YRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE 243 (702)
T ss_pred CccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence 3333345577888999888887764467899999999999998876521 1
Q ss_pred ------------CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCC--CCCccEEEecccccc-cC---CH
Q 019684 134 ------------AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP--TDYADRYVSAGSIEY-WP---DP 191 (337)
Q Consensus 134 ------------~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~--~~~fD~i~~~~~l~~-~~---~~ 191 (337)
..+++|+|+++.+++.|++|+.. ..+.+.++|+.+++.+ .++||+|+++--... +. +.
T Consensus 244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l 323 (702)
T PRK11783 244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPAL 323 (702)
T ss_pred HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHH
Confidence 13699999999999999998543 3478999999776543 357999999743322 11 22
Q ss_pred HHHHHHHHHhcc---CCCEEEEEcC
Q 019684 192 QRGIREAYRVLK---LGGKACIIGP 213 (337)
Q Consensus 192 ~~~l~~~~~~Lk---pgG~l~i~~~ 213 (337)
..+++++.+.++ +|+.+++...
T Consensus 324 ~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 324 IALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 344455444444 8988877654
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-07 Score=77.24 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=82.5
Q ss_pred cchHHHHHHhccccCCC-CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCC
Q 019684 92 HWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDA 166 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~ 166 (337)
+.+..+++.+++.+... -.+.+|||+-||+|.++.....+ +..+|+.||.++..+...++|+.. .++..+..|+
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA 101 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH
Confidence 44555666555554432 26899999999999999998888 357899999999999999987532 3478888886
Q ss_pred CC-CC---CCCCCccEEEecccccccCC-HHHHHHHHH--HhccCCCEEEEEcCC
Q 019684 167 ED-LP---FPTDYADRYVSAGSIEYWPD-PQRGIREAY--RVLKLGGKACIIGPV 214 (337)
Q Consensus 167 ~~-~~---~~~~~fD~i~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~l~i~~~~ 214 (337)
.. +. ....+||+|++.--.. ... ...++..+. .+|+++|.+++....
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~-~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYA-KGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STT-SCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHHHHhhcccCCCceEEEECCCcc-cchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 32 22 2457899999853332 222 367777777 789999999887543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-06 Score=72.69 Aligned_cols=83 Identities=27% Similarity=0.380 Sum_probs=68.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~ 170 (337)
..+...+...+++. +++.|||||.|||.++..+.+. +.+|+++++++.|+....++... ..++++.+|+...+
T Consensus 44 p~v~~~I~~ka~~k-~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKADLK-PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccCCC-CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 44667777777775 8899999999999999999999 89999999999999999988543 45889999996654
Q ss_pred CCCCCccEEEec
Q 019684 171 FPTDYADRYVSA 182 (337)
Q Consensus 171 ~~~~~fD~i~~~ 182 (337)
++ .||.++++
T Consensus 121 ~P--~fd~cVsN 130 (315)
T KOG0820|consen 121 LP--RFDGCVSN 130 (315)
T ss_pred Cc--ccceeecc
Confidence 33 49999884
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-06 Score=73.94 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC------C--C--CCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------P--F--PTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~------~--~--~~~~fD~ 178 (337)
++.+|||+||++|.|+..+.+.. +..+|+|+|+.+.. ...++.++++|+.+. . + ..+.||+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------cccceeeeecccchhhHHHhhhhhccccccCcce
Confidence 45899999999999999999985 45899999997661 113455555555321 1 1 1258999
Q ss_pred EEecccccccCCH-----------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|++-.......+. ...+.-+.+.|+|||.+++-...
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 9997644333221 13555666789999988875443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-05 Score=73.00 Aligned_cols=130 Identities=21% Similarity=0.245 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC--CeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC---CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP---FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~---~~~~~fD~i~ 180 (337)
.+|.+|||..++.|.=+..+++...+ ..|+++|.++.-++..+++... .|+..+..|....+ ...++||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 58899999999999999999988643 5679999999988888877543 45667777775433 2223599999
Q ss_pred e------cccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH
Q 019684 181 S------AGSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (337)
Q Consensus 181 ~------~~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
. ..++.--++. .++|..+.+.|||||.|+.+++..... .+.+.+.
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e-------------ENE~vV~ 301 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE-------------ENEEVVE 301 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh-------------cCHHHHH
Confidence 7 2333222221 268999999999999999988765432 1345566
Q ss_pred HHHHhC-CCcEEEE
Q 019684 239 EWFQKA-GFKDVQL 251 (337)
Q Consensus 239 ~~l~~a-GF~~v~~ 251 (337)
..|++. +|+.+..
T Consensus 302 ~~L~~~~~~~~~~~ 315 (355)
T COG0144 302 RFLERHPDFELEPV 315 (355)
T ss_pred HHHHhCCCceeecc
Confidence 667665 5655444
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.1e-05 Score=64.49 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=94.2
Q ss_pred chHHHHHHhccc---cCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHH----HHHHHHhhCCCCCeEEEEc
Q 019684 93 WTEDMRDDALEP---ADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPH----QLAKAKQKEPLKECKIVEG 164 (337)
Q Consensus 93 ~~~~~~~~~l~~---~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~~~ 164 (337)
+...+...++.- ..+ .+|.+||-+|..+|.....+++-.+ ...|++++.|+. .+..|+++ +|+-.+..
T Consensus 54 ~RSKLaAai~~Gl~~~~i-k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~ 129 (229)
T PF01269_consen 54 FRSKLAAAILKGLENIPI-KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILE 129 (229)
T ss_dssp TT-HHHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES
T ss_pred hhhHHHHHHHcCccccCC-CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeeeec
Confidence 344555555443 334 4899999999999999999988764 789999999994 45555554 78999999
Q ss_pred CCCCCC---CCCCCccEEEecccccccCCH-HHHHHHHHHhccCCCEEEEEcC------CCCchhHhhhhhhhhccCCCH
Q 019684 165 DAEDLP---FPTDYADRYVSAGSIEYWPDP-QRGIREAYRVLKLGGKACIIGP------VYPTFWLSRYFADVWMLFPKE 234 (337)
Q Consensus 165 d~~~~~---~~~~~fD~i~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~~~~~~~ 234 (337)
|+.... ..-+.+|+|++.-. .++. +-++.++...||+||.+++.-- ..+.. .. .
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~---~v----------f 193 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE---EV----------F 193 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH---HH----------H
T ss_pred cCCChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH---HH----------H
Confidence 996532 12247999997532 2343 3577888899999999988621 11110 00 1
Q ss_pred HHHHHHHHhCCCcEEEEEEcCc
Q 019684 235 EEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 235 ~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.+-.+.|++.||+..+...+.+
T Consensus 194 ~~e~~~L~~~~~~~~e~i~LeP 215 (229)
T PF01269_consen 194 AEEVKKLKEEGFKPLEQITLEP 215 (229)
T ss_dssp HHHHHHHHCTTCEEEEEEE-TT
T ss_pred HHHHHHHHHcCCChheEeccCC
Confidence 2345678889999999998875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=68.12 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~--~~~~~~fD~i~~~~~ 184 (337)
.+|.+||+||-|-|.....+.+. |..+-+.|+..|+.++..+...- ..|+....+--++. .+++++||.|+-...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 48999999999999998887777 44567789999999999998753 35677776665442 267889999998766
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-++..|...+.+.+.++|||+|++-+.+-
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 67778888899999999999999977654
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.4e-06 Score=69.74 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=80.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CC-----CCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP-----FPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~-----~~~~~fD~ 178 (337)
.++++||||.=||..+..++...| +.+|+++|++++..+.+.+... ...++++++++.+ ++ ...++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 578999999999999999999876 5899999999999988876532 3568999998843 22 34578999
Q ss_pred EEecccccccC-CHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWP-DPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
++. .|.. +....+.++.+++|+||.+++-...
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~DNvl 185 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVDNVL 185 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEeccc
Confidence 994 4443 3357899999999999999886533
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=73.36 Aligned_cols=124 Identities=22% Similarity=0.179 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
..|.+|||.=+|-|.+++.++..- ..+|+++|++|.+++..++|+.. ..+..+++|+.+....-+.||-|++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~- 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL- 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-
Confidence 469999999999999999999882 33499999999999999988643 237889999987665546799999764
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 247 (337)
..+-..++..+.+.+++||.+.+.+......... .....+.....+.|++
T Consensus 265 ---p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----------~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 265 ---PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE----------RPEKRIKSAARKGGYK 314 (341)
T ss_pred ---CCcchhhHHHHHHHhhcCcEEEEEeccchhhccc----------chHHHHHHHHhhccCc
Confidence 3355678888999999999998876654432111 1245666777777753
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=71.05 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC----CCCeEEEEeCCHHHHHHHHhhCC-C--CCeEE--EEcCCCCC----CC--CC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEP-L--KECKI--VEGDAEDL----PF--PT 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~-~--~~~~~--~~~d~~~~----~~--~~ 173 (337)
+++..|+|+|||+|.-+..+.+.+ ...+++++|+|.++++.+.+++. . +.+++ +++|..+. +- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 467789999999998877665543 24789999999999999998765 2 44544 78888542 21 12
Q ss_pred CCccEEEe-cccccccCCHH--HHHHHHHH-hccCCCEEEEE
Q 019684 174 DYADRYVS-AGSIEYWPDPQ--RGIREAYR-VLKLGGKACII 211 (337)
Q Consensus 174 ~~fD~i~~-~~~l~~~~~~~--~~l~~~~~-~LkpgG~l~i~ 211 (337)
....+++. ..++.+++..+ .+|+++++ .|+|||.+++.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 23455554 56888886654 78999999 99999999885
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=64.97 Aligned_cols=149 Identities=17% Similarity=0.047 Sum_probs=92.8
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHH----------HHHHHhhCCCCCeEEEEcCCCCCC
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ----------LAKAKQKEPLKECKIVEGDAEDLP 170 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~----------~~~a~~~~~~~~~~~~~~d~~~~~ 170 (337)
|....+ +++.+|+|+=.|.|.|+..++... |...|+++-..+.. -..+++ ....|.+.+..+...+.
T Consensus 41 L~FaGl-kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGL-KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVYANVEVIGKPLVALG 118 (238)
T ss_pred eEEecc-CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhhhhhhhhCCcccccC
Confidence 455555 489999999999999999988875 34577776554321 111111 11234444444444433
Q ss_pred CCCCCccEEEecccccc-------cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHh
Q 019684 171 FPTDYADRYVSAGSIEY-------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (337)
+.+..|+++.....|. -....++.+++++.|||||.+.+.++......-.+ ......+.+...+.+..+.
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~--dt~~~~ri~~a~V~a~vea 195 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS--DTITLHRIDPAVVIAEVEA 195 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh--hhhhhcccChHHHHHHHHh
Confidence 3344666665333322 22346899999999999999999987544311110 1111234578889999999
Q ss_pred CCCcEEEEEEcC
Q 019684 244 AGFKDVQLKRIG 255 (337)
Q Consensus 244 aGF~~v~~~~~~ 255 (337)
+||+..-...+.
T Consensus 196 aGFkl~aeS~il 207 (238)
T COG4798 196 AGFKLEAESEIL 207 (238)
T ss_pred hcceeeeeehhh
Confidence 999987777664
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.9e-06 Score=72.11 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=70.0
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC------------CCCCeEEEE
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------PLKECKIVE 163 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~------------~~~~~~~~~ 163 (337)
.....+++.+.+. +++..+|+|||.|......+...+..+++|||+.+...+.|.... ....+++..
T Consensus 29 ~~~~~il~~~~l~-~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 29 EFVSKILDELNLT-PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHHhCCC-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 3444555666653 789999999999999888887765556999999998887776421 123477888
Q ss_pred cCCCCCCCCC---CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 164 GDAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 164 ~d~~~~~~~~---~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|+.+.++.. ...|+|++++... -++....+.+....||+|-+++-..+
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred cCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 8886543211 3479999988653 33445667888888999888765433
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=67.99 Aligned_cols=121 Identities=20% Similarity=0.243 Sum_probs=84.5
Q ss_pred EEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CCCCCCCccEEEeccccccc
Q 019684 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 114 VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~i~~~~~l~~~ 188 (337)
|.||||-.|.+...|.+.....+++++|+++.-++.|+++.. ..++++..+|-.+ ++. .+..|.|+...+=...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecCCHHH
Confidence 689999999999999999555689999999999999998743 2569999999644 332 2237888876654321
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+++++....++....|++.... ....++++|.+.||.+++-.-+.
T Consensus 80 --I~~ILe~~~~~~~~~~~lILqP~~------------------~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 80 --IIEILEAGPEKLSSAKRLILQPNT------------------HAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp --HHHHHHHTGGGGTT--EEEEEESS-------------------HHHHHHHHHHTTEEEEEEEEEE
T ss_pred --HHHHHHhhHHHhccCCeEEEeCCC------------------ChHHHHHHHHHCCCEEEEeEEEe
Confidence 346777777777766677765332 45789999999999998887764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.5e-05 Score=74.63 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=94.1
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP 170 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~ 170 (337)
.+.+....++.+... ++.+|||+=||.|.++..+++. ..+|+|+|+++++++.|++++.. .|++|+.+|+++..
T Consensus 278 ~ekl~~~a~~~~~~~-~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 278 AEKLYETALEWLELA-GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence 344555556655543 6789999999999999999977 78999999999999999988643 45889999997654
Q ss_pred C---CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCc
Q 019684 171 F---PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (337)
Q Consensus 171 ~---~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 247 (337)
. ....+|.|+..--=.-+ ...+++.+ ..++|-..++++... . |...=...|.+.|++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l-~~~~p~~IvYVSCNP---~--------------TlaRDl~~L~~~gy~ 414 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRAGA--DREVLKQL-AKLKPKRIVYVSCNP---A--------------TLARDLAILASTGYE 414 (432)
T ss_pred hhccccCCCCEEEECCCCCCC--CHHHHHHH-HhcCCCcEEEEeCCH---H--------------HHHHHHHHHHhCCeE
Confidence 2 23468999852111000 01344444 446777888876421 1 122223577888988
Q ss_pred EEEEEEcC
Q 019684 248 DVQLKRIG 255 (337)
Q Consensus 248 ~v~~~~~~ 255 (337)
+.++..+.
T Consensus 415 i~~v~~~D 422 (432)
T COG2265 415 IERVQPFD 422 (432)
T ss_pred EEEEEEec
Confidence 76666654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7e-05 Score=68.14 Aligned_cols=130 Identities=20% Similarity=0.193 Sum_probs=93.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhh----------CCCCCeEEEEcCCCCC-CCCCCCc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK----------EPLKECKIVEGDAEDL-PFPTDYA 176 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~----------~~~~~~~~~~~d~~~~-~~~~~~f 176 (337)
+.-.+||-+|.|.|.-++.+.+. | ..+++-+|++|.|++.++.+ ..+++++++..|+.++ .-..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 35578999999999999999887 6 57899999999999999843 1236788999998663 2334579
Q ss_pred cEEEecccccccCCH----------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 177 DRYVSAGSIEYWPDP----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 177 D~i~~~~~l~~~~~~----------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
|.|+. .++|| .++..-+.+.|+++|.+++.....- ...+ .--.+..-+++|||
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y--~tp~----------vfw~i~aTik~AG~ 429 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY--FTPR----------VFWRIDATIKSAGY 429 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc--cCCc----------eeeeehhHHHhCcc
Confidence 99985 34443 2688889999999999998743210 0000 01134568899999
Q ss_pred cEEEEEEcCc
Q 019684 247 KDVQLKRIGP 256 (337)
Q Consensus 247 ~~v~~~~~~~ 256 (337)
...-.+..-+
T Consensus 430 ~~~Pyhv~VP 439 (508)
T COG4262 430 RVWPYHVHVP 439 (508)
T ss_pred eeeeeEEecC
Confidence 8776655543
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-05 Score=73.99 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=83.7
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEecccccccCC
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~ 190 (337)
++|-+|||.-.+...+.+. +...++-+|+|+..++....... .+...+...|+..+.|++++||+|+....++++-.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999998887776 35679999999999988876642 24588999999999999999999999999988732
Q ss_pred H----------HHHHHHHHHhccCCCEEEEEcC
Q 019684 191 P----------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 191 ~----------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ...+.+++++|+|||+++.+..
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 1 2468999999999999877654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.6e-05 Score=71.28 Aligned_cols=127 Identities=16% Similarity=0.063 Sum_probs=91.4
Q ss_pred cccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC-------------------------------
Q 019684 86 HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------------------------------- 134 (337)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~------------------------------- 134 (337)
..-.+.+..+.++..++..+... ++..++|.-||+|.+++..+...++
T Consensus 168 ~~~g~ApLketLAaAil~lagw~-~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~ 246 (381)
T COG0116 168 VYDGPAPLKETLAAAILLLAGWK-PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEE 246 (381)
T ss_pred ccCCCCCchHHHHHHHHHHcCCC-CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHH
Confidence 33345677888999888888775 5689999999999999988776421
Q ss_pred -C-------eEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccc-cCCH---H----HH
Q 019684 135 -K-------NVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEY-WPDP---Q----RG 194 (337)
Q Consensus 135 -~-------~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~-~~~~---~----~~ 194 (337)
. .++|+|+++.+++.|+.|+.. .-++|.++|+..++.+-+.+|+|+|+--..- +.+. . .+
T Consensus 247 ~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~f 326 (381)
T COG0116 247 RARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREF 326 (381)
T ss_pred HHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHH
Confidence 1 377999999999999988644 3489999999887644367999999633321 2222 2 34
Q ss_pred HHHHHHhccCCCEEEEEcC
Q 019684 195 IREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~ 213 (337)
.+.+.+.++--+..++++.
T Consensus 327 g~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 327 GRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHhcCCceEEEEcc
Confidence 4455566666677777654
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4e-05 Score=64.17 Aligned_cols=122 Identities=15% Similarity=0.081 Sum_probs=84.6
Q ss_pred cchHHHHHHhccccCC-CCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCC
Q 019684 92 HWTEDMRDDALEPADL-SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDA 166 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~ 166 (337)
+.+..+++.+++.+.. .-.+.++||+-+|+|.++...+.+ +..+++.+|.+.......++|.. ..++.++..|+
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence 3445555555555543 137899999999999999999888 35789999999999999998843 25578888888
Q ss_pred CCC-CCCCC--CccEEEecccccc-cCCHHHHHHH--HHHhccCCCEEEEEcCC
Q 019684 167 EDL-PFPTD--YADRYVSAGSIEY-WPDPQRGIRE--AYRVLKLGGKACIIGPV 214 (337)
Q Consensus 167 ~~~-~~~~~--~fD~i~~~~~l~~-~~~~~~~l~~--~~~~LkpgG~l~i~~~~ 214 (337)
... +.... +||+|+.---++. +-+....+.. -...|+|+|.+++....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 532 22222 4999998654441 1222333333 45779999999987553
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.4e-05 Score=66.48 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=73.0
Q ss_pred cccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCC
Q 019684 103 EPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPT 173 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~ 173 (337)
+...+..++.+|+|+|+-+|.|+..+++..+ +..|+|+|+.|.-. .+++.++++|++..+ +..
T Consensus 38 ~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~--------~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 38 EKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred HhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc--------CCCceEEeeeccCccHHHHHHHHcCC
Confidence 3335556899999999999999999988853 35699999955321 256899999996643 334
Q ss_pred CCccEEEecccc--------cccCCH---HHHHHHHHHhccCCCEEEEEcCC
Q 019684 174 DYADRYVSAGSI--------EYWPDP---QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 174 ~~fD~i~~~~~l--------~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
..+|+|+|-..- +|.... ...+.-+..+|+|||.+++-...
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 557999974322 221111 24677778899999999886543
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.9e-05 Score=64.04 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=80.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC--eEEEEcCCCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTD 174 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~d~~~~~~~~~ 174 (337)
+.+.++..-+. -.+++|||.|+|+|.-++..+.. +...|+..|+.|......+-|...+. +.+...|.-. .+.
T Consensus 67 lAR~i~~~Pet-VrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~ 141 (218)
T COG3897 67 LARYIDDHPET-VRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPP 141 (218)
T ss_pred HHHHHhcCccc-cccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCc
Confidence 33444444333 27899999999999999987777 45789999999888888877765443 5666666644 356
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhcc-CCCEEEEEcCCCC
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLK-LGGKACIIGPVYP 216 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~ 216 (337)
.||+++...++..-+...+++. ..+.|+ .|-.+++.++...
T Consensus 142 ~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 142 AFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred ceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 7999999998876666667777 555554 4555555566544
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00035 Score=58.74 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=100.8
Q ss_pred chHHHHHHhcccc---CCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-CCCCeEEEEcCCCC
Q 019684 93 WTEDMRDDALEPA---DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAED 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~---~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~~~ 168 (337)
+...+...++.-+ ++ +++.+||=+|.-+|.....+++-.+...+++++.|+......-..+ ..+|+-.+..|+..
T Consensus 57 ~RSKLaAaIl~Gl~~~pi-~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~ 135 (231)
T COG1889 57 RRSKLAAAILKGLKNFPI-KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARK 135 (231)
T ss_pred chhHHHHHHHcCcccCCc-CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCC
Confidence 3455666665544 34 4899999999999999999999988789999999987655444332 23788889999966
Q ss_pred CC---CCCCCccEEEecccccccCCH-HHHHHHHHHhccCCCEEEEEcCC--CC-chhHhhhhhhhhccCCCHHHHHHHH
Q 019684 169 LP---FPTDYADRYVSAGSIEYWPDP-QRGIREAYRVLKLGGKACIIGPV--YP-TFWLSRYFADVWMLFPKEEEYIEWF 241 (337)
Q Consensus 169 ~~---~~~~~fD~i~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~l 241 (337)
.. .--+..|+|+..-. .++. +-+..++...||+||.+++.--. .. +...... ..+-.+-|
T Consensus 136 P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v----------f~~ev~kL 202 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV----------FKDEVEKL 202 (231)
T ss_pred cHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH----------HHHHHHHH
Confidence 32 22345899885321 2333 24678889999999987765211 10 0000011 12334678
Q ss_pred HhCCCcEEEEEEcCc
Q 019684 242 QKAGFKDVQLKRIGP 256 (337)
Q Consensus 242 ~~aGF~~v~~~~~~~ 256 (337)
++.||++.++..+.+
T Consensus 203 ~~~~f~i~e~~~LeP 217 (231)
T COG1889 203 EEGGFEILEVVDLEP 217 (231)
T ss_pred HhcCceeeEEeccCC
Confidence 889999999988875
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.4e-05 Score=72.06 Aligned_cols=141 Identities=19% Similarity=0.218 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhh-------CCCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCCCC-C-CC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKH-------VDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPF-P-TD 174 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~-~-~~ 174 (337)
.++.+|+|.+||+|.++..+.+. .+..+++|+|+++.++..|+.++. ..+..+..+|....+. . ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 36778999999999999888763 257899999999999998876531 1234577888744332 2 46
Q ss_pred CccEEEeccccccc--C------C-------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCC
Q 019684 175 YADRYVSAGSIEYW--P------D-------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (337)
Q Consensus 175 ~fD~i~~~~~l~~~--~------~-------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (337)
.||+|+++--+... . + ...++..+.+.|++||++.++-+. ..+.. -..
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~---~~L~~--------~~~ 193 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN---GFLFS--------SSS 193 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH---HHHHG--------STH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc---hhhhc--------cch
Confidence 89999994222111 0 0 125889999999999998776542 11110 001
Q ss_pred HHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 234 ~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
...+++.|-+.+. +..+..+....+..
T Consensus 194 ~~~iR~~ll~~~~-i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 194 EKKIRKYLLENGY-IEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHHHHHHEE-EEEEEE--TTSSSS
T ss_pred HHHHHHHHHhhch-hhEEeecccceecc
Confidence 2456666655433 55566666655555
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.1e-05 Score=72.62 Aligned_cols=98 Identities=11% Similarity=0.156 Sum_probs=78.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSAGSI 185 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~~~~l 185 (337)
+.+|||+.||+|..++.++.+.+ ..+|+++|+++.+++.+++|... .++.+++.|+..+- .....||+|...- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 35899999999999999998753 36899999999999999988643 24778888886532 2235699998744 2
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+..++..+.+.+++||.++++.
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 345679999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.5e-05 Score=76.09 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC--------CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC-----CCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL-----PFPT 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~-----~~~~ 173 (337)
...+|||.|||+|.++..+++..+ ..+++|+|+++..+..++.++.. ..+.....|.... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 356899999999999998887653 25789999999999999877432 1244454553211 1112
Q ss_pred CCccEEEec
Q 019684 174 DYADRYVSA 182 (337)
Q Consensus 174 ~~fD~i~~~ 182 (337)
+.||+|+++
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 479999995
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.3e-05 Score=69.21 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.++||+||++|.|+..+.+. +.+|++||.++ + +......+++.....|........+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l---~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-M---AQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-c---CHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 47899999999999999999998 78999999654 2 22233446788888887443222567999998654
Q ss_pred CCHHHHHHHHHHhccCC
Q 019684 189 PDPQRGIREAYRVLKLG 205 (337)
Q Consensus 189 ~~~~~~l~~~~~~Lkpg 205 (337)
..|.++++-+.+.|..|
T Consensus 280 e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 EKPARVAELMAQWLVNG 296 (357)
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 46788888899999876
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.3e-05 Score=68.57 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=77.2
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFP 172 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~ 172 (337)
...+.+.+++.+... ++..|||||+|+|.++..+.+. +.+++++|+++...+..+++.. ..+++++.+|+.++...
T Consensus 15 ~~~~~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 15 DPNIADKIVDALDLS-EGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGG
T ss_pred CHHHHHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccH
Confidence 355666677776654 7899999999999999999998 4899999999999999998765 57899999999887654
Q ss_pred C---CCccEEEecccccccCCHHHHHHHHHHhccC
Q 019684 173 T---DYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204 (337)
Q Consensus 173 ~---~~fD~i~~~~~l~~~~~~~~~l~~~~~~Lkp 204 (337)
+ ..-..|+++--. ++ -..++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 4 334556654222 22 23566666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.1e-06 Score=66.42 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=58.8
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHH
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ 192 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~ 192 (337)
-.+-||||. .+..|+...+-++-. +.+++++......+|.+++.|+|++.++++|+.-.+
T Consensus 5 ~kv~ig~G~-------~r~npgWi~~d~ed~-------------~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E 64 (185)
T COG4627 5 EKVKIGAGG-------KRVNPGWIITDVEDR-------------PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE 64 (185)
T ss_pred eEEEEeccc-------cccCCCceeeehhcc-------------cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH
Confidence 467789997 333466655433221 123333333355679999999999999999997543
Q ss_pred --HHHHHHHHhccCCCEEEEEcCC
Q 019684 193 --RGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 193 --~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.+++++++.|||||+|-+.-+.
T Consensus 65 g~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 65 GTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred HHHHHHHHHHHhCcCcEEEEEcCC
Confidence 6899999999999999988654
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.6e-05 Score=63.77 Aligned_cols=147 Identities=20% Similarity=0.171 Sum_probs=95.7
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-eEEEEcCCCCCC---CCCCCcc
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDAEDLP---FPTDYAD 177 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~d~~~~~---~~~~~fD 177 (337)
++...+..++..+||||+.||.++..+.+. +..+|+++|..-.++..--++- ++ +.+...|+..+. +.+ ..|
T Consensus 71 le~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d--~rV~~~E~tN~r~l~~~~~~~-~~d 146 (245)
T COG1189 71 LEEFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRND--PRVIVLERTNVRYLTPEDFTE-KPD 146 (245)
T ss_pred HHhcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcC--CcEEEEecCChhhCCHHHccc-CCC
Confidence 444444458999999999999999999887 4578999999988877655432 33 334445665432 323 588
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEE-cCCCCchhHhh----hhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII-GPVYPTFWLSR----YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++++--++. ....+|..+..+++|++.++.. -|-++.....- ...+......-.+.+.+++++.||.+..+.
T Consensus 147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 999876555 4567999999999999887653 22221110000 000100111235678889999999988776
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
...
T Consensus 224 ~Sp 226 (245)
T COG1189 224 KSP 226 (245)
T ss_pred ccC
Confidence 543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=65.63 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=50.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCC--CCCCC-ccEEEe
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP--FPTDY-ADRYVS 181 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~--~~~~~-fD~i~~ 181 (337)
..|+|+.||.|..++.+++. ..+|+++|+++..++.|+.|+. ..+++++++|+.++. ..... ||+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 36999999999999999999 5689999999999999998742 467999999996532 22222 899997
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.8e-05 Score=62.84 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=71.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----------CCCeEEEEcCCCC-CCCCCCCccEE
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECKIVEGDAED-LPFPTDYADRY 179 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~~~d~~~-~~~~~~~fD~i 179 (337)
.-.+.|||||-|.++..++..+|..-+.|.++-...-+..+++.. ..|+.+...++.. +| +-|..-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhhc
Confidence 356899999999999999999999999999998777777765521 1345555555422 22 223332
Q ss_pred EecccccccCCHH-------------HHHHHHHHhccCCCEEEEEcCCC
Q 019684 180 VSAGSIEYWPDPQ-------------RGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 180 ~~~~~l~~~~~~~-------------~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
-+.-.+..++|+. ..+.+..-+|++||.++.++...
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 3333344455543 57889999999999999876543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=64.53 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=64.3
Q ss_pred CCEEEEEcCccc-HHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCCCCCCCCccEEEecc
Q 019684 111 NMLVVDVGGGTG-FTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 111 ~~~VLDiGcG~G-~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~i~~~~ 183 (337)
+.+|+=||||.= ..++.+++.+ ++..|+++|+++++.+.+++... ..+++|+.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999964 4445555543 56789999999999999987543 3679999999977654446799999876
Q ss_pred cccc-cCCHHHHHHHHHHhccCCCEEEEE
Q 019684 184 SIEY-WPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 184 ~l~~-~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...- -.+..+++.++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 5542 236679999999999999999886
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=60.68 Aligned_cols=100 Identities=22% Similarity=0.157 Sum_probs=67.2
Q ss_pred CCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CCCCC--------CCCCCC
Q 019684 106 DLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDL--------PFPTDY 175 (337)
Q Consensus 106 ~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~~~~--------~~~~~~ 175 (337)
.+..++.+|||+||-+|.|+....+.. |...|.|||+-.- ....+++++++ |+.+. ..++..
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 344689999999999999999888886 8899999998321 11245566665 66552 145678
Q ss_pred ccEEEecccccc----cCCHHH-------HHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSAGSIEY----WPDPQR-------GIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~~~l~~----~~~~~~-------~l~~~~~~LkpgG~l~i~~~ 213 (337)
.|+|++...-.. +.|... ++.-....++|+|.++.-..
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 999998543221 122222 34444566789999987643
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=65.85 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCC-C-CCCCCccEEEe-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDL-P-FPTDYADRYVS- 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~-~-~~~~~fD~i~~- 181 (337)
.++.+|||.+++.|.-+..+++... ...+++.|+++.-+...+++ ....++.....|.... + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 4789999999999999999998875 58999999999988888765 3345677777777543 1 22335999998
Q ss_pred -----cccccccCCH----------------HHHHHHHHHhc----cCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHH
Q 019684 182 -----AGSIEYWPDP----------------QRGIREAYRVL----KLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236 (337)
Q Consensus 182 -----~~~l~~~~~~----------------~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
..++..-++. .++|+++.+.+ ||||+++.++...... .+.+.
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-------------ENE~v 230 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-------------ENEEV 230 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-------------GTHHH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-------------HHHHH
Confidence 2233333331 26899999999 9999999887643221 13455
Q ss_pred HHHHHHhC-CCcEEE
Q 019684 237 YIEWFQKA-GFKDVQ 250 (337)
Q Consensus 237 ~~~~l~~a-GF~~v~ 250 (337)
+...|++. .|+.+.
T Consensus 231 V~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 231 VEKFLKRHPDFELVP 245 (283)
T ss_dssp HHHHHHHSTSEEEEC
T ss_pred HHHHHHhCCCcEEEe
Confidence 66667765 555444
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.5e-05 Score=71.36 Aligned_cols=71 Identities=32% Similarity=0.436 Sum_probs=51.7
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED 168 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~ 168 (337)
.+.+...+++.+... + ..|||+-||.|.++..+++. ..+|+|+|.++.+++.|++++.. .|++|+.+++++
T Consensus 182 ~~~l~~~~~~~l~~~-~-~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 182 NEKLYEQALEWLDLS-K-GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHHCTT--T-TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHHhhcC-C-CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 344555556655543 3 38999999999999999998 67999999999999999988543 568999887654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=59.71 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=75.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.+.+.|+|+|+|.++...+.. .-+|++++.+|...+.|.+|.. ..|++++.+|+.+..| +..|+|+|-..=..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 377999999999998877666 6799999999999999999853 3579999999988877 34799987432111
Q ss_pred c--CCHHHHHHHHHHhccCCCEEEEE
Q 019684 188 W--PDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 188 ~--~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+ .....+++.+.+.|+-.+.++-.
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccccH
Confidence 1 12236788888899999888643
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=61.62 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=66.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC----CCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL----PFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~----~~~~~~fD~i~~ 181 (337)
....|+|.-||-|..++.++.. +..|++||++|.-+..|+.|++ ..+++|+++|+.++ .+....+|+|..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4578999999999999999998 6789999999999999999864 25799999999653 344444666665
Q ss_pred cccccccCCHHHHHHHHHHhccCCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGG 206 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG 206 (337)
.---..-.-....+-.+...++|.|
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhH
Confidence 4322211111233344445555543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00068 Score=60.69 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=92.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHH-------hhC----------------CCCC--------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK-------QKE----------------PLKE-------- 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~-------~~~----------------~~~~-------- 158 (337)
..-+||--|||.|.++..++.. +..+-|-+.|--|+--.. ... ..++
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 3568999999999999999998 667777788766553221 100 0000
Q ss_pred ------------eEEEEcCCCCC---CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh
Q 019684 159 ------------CKIVEGDAEDL---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223 (337)
Q Consensus 159 ------------~~~~~~d~~~~---~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 223 (337)
.+.-.+|+.+. +-..+.||+|+..+.+..-.+.-..++.|...|||||..+-..|..-.+.-...
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 11122444321 112246999999987777777788999999999999998866553211100000
Q ss_pred hhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...-..--.+.+++..+.+.-||++++...+.
T Consensus 308 ~~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 308 VENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred CcccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 00000012478999999999999999887664
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=61.82 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCCEEEEEcCcccHHHHHHHh--------h-------CCCCeEEEEeCCHHHHHHHHhhC----------------CCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVK--------H-------VDAKNVTILDQSPHQLAKAKQKE----------------PLKE 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~----------------~~~~ 158 (337)
+..+|+|+|||+|..+..+.. . .|..+|..-|+-..-....-+.+ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 356899999999977654422 1 24578888887532221111111 0011
Q ss_pred ---eEEEEcCCCCCCCCCCCccEEEecccccccCC--------------------------------------HHHHHHH
Q 019684 159 ---CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD--------------------------------------PQRGIRE 197 (337)
Q Consensus 159 ---~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~--------------------------------------~~~~l~~ 197 (337)
+.-+.+++..--|+.++.+++++.+++|++.. ...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11223455444478899999999999998752 1134555
Q ss_pred HHHhccCCCEEEEEcCCCCc-----------hh---Hhhhhhhhh----------------ccCCCHHHHHHHHHhCC-C
Q 019684 198 AYRVLKLGGKACIIGPVYPT-----------FW---LSRYFADVW----------------MLFPKEEEYIEWFQKAG-F 246 (337)
Q Consensus 198 ~~~~LkpgG~l~i~~~~~~~-----------~~---~~~~~~~~~----------------~~~~~~~~~~~~l~~aG-F 246 (337)
=.+-|.|||+++++...... .+ +...+.+.. ..+++.+++++.+++.| |
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCE
Confidence 56778999999987433210 00 111111111 13478999999999887 6
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
++.+++.+.
T Consensus 303 ~I~~le~~~ 311 (386)
T PLN02668 303 AIDKLEVFK 311 (386)
T ss_pred EeeeeEEee
Confidence 665555544
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00039 Score=56.20 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHh-----hCCCCeEEEEeCCHHHHHHHHhhCCC------CCeEEEEcCCCCCCCCCCCcc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVK-----HVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDYAD 177 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~fD 177 (337)
.+..+|+|+|||.|.++..++. . ++.+|+++|.++..++.+.++... .++.+..++..+... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 3678999999999999999998 5 689999999999998888765321 345555555543221 34567
Q ss_pred EEEecccccccCCHH-HHHHHHHHhccCCCEEEE
Q 019684 178 RYVSAGSIEYWPDPQ-RGIREAYRVLKLGGKACI 210 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~i 210 (337)
+++. +|-..+.. .+++.+.+ |+-..++
T Consensus 102 ~~vg---LHaCG~Ls~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 102 ILVG---LHACGDLSDRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEE---eecccchHHHHHHHHHH---cCCCEEE
Confidence 7775 44444442 45555444 5554443
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00017 Score=58.20 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=45.8
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCC
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAE 167 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~ 167 (337)
.|||||||.|.++..++...+..+++++|+++.+.+.++++... .++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 48999999999999999988778999999999999999887432 34777776654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.53 E-value=1.9e-05 Score=60.51 Aligned_cols=97 Identities=20% Similarity=0.326 Sum_probs=42.2
Q ss_pred EEEcCcccHHHHHHHhhCCC---CeEEEEeCCHH---HHHHHHhhCCCCCeEEEEcCCCCC-C-CCCCCccEEEeccccc
Q 019684 115 VDVGGGTGFTTLGIVKHVDA---KNVTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDL-P-FPTDYADRYVSAGSIE 186 (337)
Q Consensus 115 LDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~---~~~~a~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~i~~~~~l~ 186 (337)
||||+..|..+..+++..+. .+++++|..+. .-+..++.....+++++.++..+. + +..+++|+|+.-.. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 69999999999888876543 37999999984 444444322235699999998542 2 33568999997542 2
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+.....++.+.+.|+|||.+++-+
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 22334567888999999999998753
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0025 Score=54.52 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=92.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.+.++.||||-.+.+...+.+..+...+++.|+++.-++.|.++... .+++...+|....--.+..+|+|+...+=
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 56679999999999999999998889999999999999999887654 34677777774321233469999876544
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.. -...++++-.+.|+-=-++++... ....+++++|.+.+|.++...-+.+
T Consensus 96 G~--lI~~ILee~~~~l~~~~rlILQPn------------------~~~~~LR~~L~~~~~~I~~E~ileE 146 (226)
T COG2384 96 GT--LIREILEEGKEKLKGVERLILQPN------------------IHTYELREWLSANSYEIKAETILEE 146 (226)
T ss_pred HH--HHHHHHHHhhhhhcCcceEEECCC------------------CCHHHHHHHHHhCCceeeeeeeecc
Confidence 32 124577777776664345554422 1457899999999999887766653
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00053 Score=62.32 Aligned_cols=85 Identities=14% Similarity=0.231 Sum_probs=67.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCC----
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP---- 170 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~---- 170 (337)
+.+++++.+.. .++..++|.=+|.|..+..+++.++..+|+|+|.++.+++.+++++.. .++.++++++.++.
T Consensus 8 ll~Evl~~L~~-~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGLNI-KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhcCc-CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 45555666554 377899999999999999999987779999999999999999987543 47889999886543
Q ss_pred -CCCCCccEEEec
Q 019684 171 -FPTDYADRYVSA 182 (337)
Q Consensus 171 -~~~~~fD~i~~~ 182 (337)
....++|.|+..
T Consensus 87 ~~~~~~vDgIl~D 99 (305)
T TIGR00006 87 ELLVTKIDGILVD 99 (305)
T ss_pred hcCCCcccEEEEe
Confidence 233568988873
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0018 Score=58.06 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=64.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCC---
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--- 170 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~--- 170 (337)
+..+.++.+... ++...+|.--|.|..+..+.+.+|. .+++|+|-++.+++.|+++... .++.++++++.++.
T Consensus 11 Ll~E~i~~L~~~-~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 11 LLNEVVELLAPK-PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHHhcccC-CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHH
Confidence 555556666554 6789999999999999999999875 5699999999999999998643 56888888775542
Q ss_pred --CCCCCccEEEe
Q 019684 171 --FPTDYADRYVS 181 (337)
Q Consensus 171 --~~~~~fD~i~~ 181 (337)
...+++|.|+.
T Consensus 90 ~~~~i~~vDGiL~ 102 (314)
T COG0275 90 KELGIGKVDGILL 102 (314)
T ss_pred HhcCCCceeEEEE
Confidence 22346777766
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00025 Score=67.54 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED 168 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~ 168 (337)
+.+..+||+.||||.+++.+++. ..+|+|++++++.++.|+.++.. .|++|+++-+++
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 36789999999999999999987 67999999999999999998765 468999996655
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00061 Score=58.09 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=66.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhh---C-CCCeEEEEeCCHHHHHHH-Hh-hCCCCCeEEEEcCCCCCC----C--C--CCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKH---V-DAKNVTILDQSPHQLAKA-KQ-KEPLKECKIVEGDAEDLP----F--P--TDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~---~-~~~~v~gvD~s~~~~~~a-~~-~~~~~~~~~~~~d~~~~~----~--~--~~~ 175 (337)
+++.|+|+|.=.|..+..++.. + +..+|+|+|++....... .+ ....++++++++|..+.. . . ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5689999999999888777653 3 568999999964443222 22 122368999999986642 1 1 112
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhcc-CCCHHHHHHHHHhCC
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML-FPKEEEYIEWFQKAG 245 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aG 245 (337)
-.+ ++-.+-|...+..+.|+....++++|+++++.+...........-...|.. --....+.+.|++..
T Consensus 112 ~vl-VilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~ 181 (206)
T PF04989_consen 112 PVL-VILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHP 181 (206)
T ss_dssp SEE-EEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTT
T ss_pred ceE-EEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCC
Confidence 223 334444555667788899999999999999876542221111111111111 113566777887765
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=60.01 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHh---hCCCCCeEEEEcCC----CCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQ---KEPLKECKIVEGDA----EDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~---~~~~~~~~~~~~d~----~~~~~~~~~fD~i~~ 181 (337)
..++|||+|.|.|.-+..+-..+|.. .++.++.|+..-+.... +...........|+ .++|..+ .|++++.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad-~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAAD-LYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccc-eeehhhh
Confidence 45779999999998887777777764 57778888866554442 22111122223333 3344333 4777776
Q ss_pred cccccccCCH---HHHHHHHHHhccCCCEEEEEcCCCCch
Q 019684 182 AGSIEYWPDP---QRGIREAYRVLKLGGKACIIGPVYPTF 218 (337)
Q Consensus 182 ~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~ 218 (337)
.+-|-+.... ...++.+...+.|||.|+|++...+..
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 6655555433 347899999999999999999876654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00044 Score=65.95 Aligned_cols=118 Identities=18% Similarity=0.098 Sum_probs=78.7
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeC--CHHHHHHHHhhCCCCCeEEEEcCC-CCCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ--SPHQLAKAKQKEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~i~~~~~l~~ 187 (337)
-..|+|...|.|.++..|.+. ..-|.-+=+ .+..+...-++ ++-=+..|. +.++.-+.+||+|++.+++..
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~~~~ntL~vIydR----GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD--PVWVMNVVPVSGPNTLPVIYDR----GLIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeeecccccHHHHHhccC--CceEEEecccCCCCcchhhhhc----ccchhccchhhccCCCCcchhheehhhhhhh
Confidence 357999999999999999876 333332222 12222222221 222233455 556666789999999999988
Q ss_pred cCCH---HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 188 WPDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 188 ~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..+. ..++-|+.|+|+|||.++|-+... ..++++.+++.-.++....
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------VLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------HHHHHHHHHHhCcceEEEE
Confidence 7654 679999999999999999976531 2456667777777764433
|
; GO: 0008168 methyltransferase activity |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0065 Score=55.95 Aligned_cols=95 Identities=20% Similarity=0.328 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
+++++|+=+|+| .|.++..+++.. +++|+++|.|++-.+.|++..... ++.. |......-.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~---~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADH---VINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcE---EEEcCCchhhHHhHhhCcEEEECCC--
Confidence 489999999887 567888888875 599999999999999999875422 2222 22111111223999986543
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
...+....+.|++||+++++...
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 45778899999999999998655
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0047 Score=57.37 Aligned_cols=146 Identities=17% Similarity=0.202 Sum_probs=78.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----------------CCCeEEEEeCCHHHHHHH-H---hh----CCCCC--eEEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV----------------DAKNVTILDQSPHQLAKA-K---QK----EPLKE--CKIVE 163 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~----------------~~~~v~gvD~s~~~~~~a-~---~~----~~~~~--~~~~~ 163 (337)
..-+|+|+||.+|..+..+.... |..+|+--|+-..-.... + .. ....+ +.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 55789999999999887654321 236888888743221111 1 00 00123 33456
Q ss_pred cCCCCCCCCCCCccEEEecccccccCCH---------------------------------------HHHHHHHHHhccC
Q 019684 164 GDAEDLPFPTDYADRYVSAGSIEYWPDP---------------------------------------QRGIREAYRVLKL 204 (337)
Q Consensus 164 ~d~~~~~~~~~~fD~i~~~~~l~~~~~~---------------------------------------~~~l~~~~~~Lkp 204 (337)
+.+..--+++++.|++++.+++|++... ..+|+.=.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 7776655889999999999999987430 1356666677899
Q ss_pred CCEEEEEcCCCCc--------hh----Hhhhhhhh----------------hccCCCHHHHHHHHHhCC-CcEEEEEEcC
Q 019684 205 GGKACIIGPVYPT--------FW----LSRYFADV----------------WMLFPKEEEYIEWFQKAG-FKDVQLKRIG 255 (337)
Q Consensus 205 gG~l~i~~~~~~~--------~~----~~~~~~~~----------------~~~~~~~~~~~~~l~~aG-F~~v~~~~~~ 255 (337)
||++++.-...+. .. +...+.++ ...+++.+++.+.+++.| |++.+++.+.
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~ 255 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFE 255 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEe
Confidence 9999987432221 01 11111111 113478999999998876 6665555544
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0025 Score=55.96 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=58.2
Q ss_pred CCC--EEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------------CCeEEEEcCCCC-CCCCCC
Q 019684 110 RNM--LVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------KECKIVEGDAED-LPFPTD 174 (337)
Q Consensus 110 ~~~--~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~~~~~~~~d~~~-~~~~~~ 174 (337)
++. +|||.-+|+|..+..++.. +++|+++|-++.+....++++.. .+++++.+|..+ +.-...
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 444 8999999999999999998 88899999999887766644221 357788888744 222223
Q ss_pred CccEEEeccccccc
Q 019684 175 YADRYVSAGSIEYW 188 (337)
Q Consensus 175 ~fD~i~~~~~l~~~ 188 (337)
+||+|++-=.+.|-
T Consensus 164 ~fDVVYlDPMfp~~ 177 (250)
T PRK10742 164 RPQVVYLDPMFPHK 177 (250)
T ss_pred CCcEEEECCCCCCC
Confidence 69999988777764
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0036 Score=54.84 Aligned_cols=147 Identities=12% Similarity=0.017 Sum_probs=83.7
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC--CCCCeEEEEcCCCCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECKIVEGDAEDLP 170 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~ 170 (337)
+.+.+...++... ++..+|+|||||.=-++.......++..++|+|++..+++...+.. ...+.++...|+..-+
T Consensus 91 ~Ld~fY~~if~~~---~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 91 NLDEFYDEIFGRI---PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP 167 (251)
T ss_dssp GHHHHHHHHCCCS------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred hHHHHHHHHHhcC---CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence 3444555555543 3578999999999999888777767899999999999998887653 2256778888886543
Q ss_pred CCCCCccEEEecccccccCCHHH-HHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQR-GIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~-~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+....|+.+..-+++.+...+. .--++.+.+. .=.++++.+...-..-...+... -...+..++...|+.+.
T Consensus 168 -~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~-----y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 168 -PKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQT-----YSAWFEALAAERGWIVD 240 (251)
T ss_dssp -TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHHC-----HHHHHHHHCCTTCEEEE
T ss_pred -CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccccccC-----HHHHHHHhcccCCceee
Confidence 3456999999888876643321 2122233332 23455555433211111111111 13556677777787733
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0044 Score=49.55 Aligned_cols=109 Identities=18% Similarity=0.296 Sum_probs=68.9
Q ss_pred eEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC--CCCCCccEEEecccccccCC--------HH---HHHHHH
Q 019684 136 NVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWPD--------PQ---RGIREA 198 (337)
Q Consensus 136 ~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~~~~~fD~i~~~~~l~~~~~--------~~---~~l~~~ 198 (337)
+|+|+|+-+++++.+++++.. .+++++..+-+.+. .+.+++|+++.+ |.++|. ++ ..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 689999999999999987543 46899988776654 233479998865 344442 22 688999
Q ss_pred HHhccCCCEEEEEcCC-CCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 199 YRVLKLGGKACIIGPV-YPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 199 ~~~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.+.|+|||.+.++-.. ++....... ...++.+-|...-|.+.....++
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~---------av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESE---------AVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHH---------HHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHH---------HHHHHHHhCCcceEEEEEEEccC
Confidence 9999999999887543 332211111 12344555566788888887776
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.027 Score=55.04 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-----------CC-------
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-----------LP------- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-----------~~------- 170 (337)
++.+|+=+|||. |..+...++.. |++|+++|.+++.++.+++.. .++...|..+ +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG----A~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG----AEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC----CeEEEeccccccccccchhhhcchhHHHHH
Confidence 689999999996 77777778776 569999999999999998742 2332222111 00
Q ss_pred ---CCC--CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 171 ---FPT--DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 171 ---~~~--~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+.+ +.+|+|+.......-+.+..+.+++.+.+||||.++....
T Consensus 239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3599999877665444555556999999999999987754
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0038 Score=56.46 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=65.1
Q ss_pred CCEEEEEcCcccHH-HHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCC-----CCCCCCCCccEE
Q 019684 111 NMLVVDVGGGTGFT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAE-----DLPFPTDYADRY 179 (337)
Q Consensus 111 ~~~VLDiGcG~G~~-~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~-----~~~~~~~~fD~i 179 (337)
.-++||||||.... .+.-++.+ +++++|+|+++..++.|+++... .+|+++...-. .+...++.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 46899999998644 34334443 89999999999999999987543 35776544221 122234579999
Q ss_pred EecccccccCCHHHHHHHHHHh---c-cC-----CCEEEEEcCCCCc-------hhHhhhhhhhhc-------------c
Q 019684 180 VSAGSIEYWPDPQRGIREAYRV---L-KL-----GGKACIIGPVYPT-------FWLSRYFADVWM-------------L 230 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~---L-kp-----gG~l~i~~~~~~~-------~~~~~~~~~~~~-------------~ 230 (337)
+|+--++.-.+. ......+. | ++ .....+.....+. ..+.++..+... .
T Consensus 182 mCNPPFy~s~~e--~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgK 259 (299)
T PF05971_consen 182 MCNPPFYSSQEE--AEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGK 259 (299)
T ss_dssp EE-----SS----------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESS
T ss_pred ecCCccccChhh--hcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccC
Confidence 997766544332 11111111 2 11 1222233222211 112222222211 1
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 231 FPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 231 ~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+...+.+.|++.|-..+.+.++.
T Consensus 260 kssL~~l~~~L~~~~~~~~~~~e~~ 284 (299)
T PF05971_consen 260 KSSLKPLKKELKKLGATNYKVTEMC 284 (299)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEE
T ss_pred cccHHHHHHHHHhcCCceEEEEEcc
Confidence 2467899999999999888777764
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0065 Score=56.71 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC---CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP---FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~---~~~~~fD~i~~ 181 (337)
+++.||||..+-.|.=+.+++.... ...|++.|.+..-+....+++.. .|......|..++| ++. +||-|++
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 6899999999999988888777643 46899999999988888877543 45666777776554 444 7999987
Q ss_pred c----c--ccc------ccCC----------HHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 182 A----G--SIE------YWPD----------PQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 182 ~----~--~l~------~~~~----------~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
- . ++. ...+ ..++|..+...+++||+|+.++...
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 2 1 111 1111 1268889999999999999887654
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.005 Score=56.04 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=59.3
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCC-----
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP----- 170 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~----- 170 (337)
..++++.+.. .++..++|.=-|.|..+..+.+.+|+++++|+|-++.+++.+++++. ..++.++.+++.++.
T Consensus 9 l~Evl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 9 LKEVLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 3444444443 37789999999999999999999888999999999999999998865 367999999886643
Q ss_pred C-CCCCccEEEe
Q 019684 171 F-PTDYADRYVS 181 (337)
Q Consensus 171 ~-~~~~fD~i~~ 181 (337)
. ...++|.|+.
T Consensus 88 ~~~~~~~dgiL~ 99 (310)
T PF01795_consen 88 LNGINKVDGILF 99 (310)
T ss_dssp TTTTS-EEEEEE
T ss_pred ccCCCccCEEEE
Confidence 2 3346888887
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.061 Score=46.95 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=69.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCC-CCC-CCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAED-LPF-PTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~-~~~-~~~~fD~i~~~~~l 185 (337)
.|++||-+|=.. ..++.++-..+..+|+.+|+++..++..++.+.. -+++.+..|+.+ +|- -.++||++++.-..
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 589999999554 3344444444568999999999999888765433 238888999955 442 23679999973211
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
-.....-++.+....||..|...+............ ..++++.+.+.||.+.++..
T Consensus 123 -T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~-----------~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 123 -TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDK-----------WLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp -SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHH-----------HHHHHHHHHTS--EEEEEEE
T ss_pred -CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHH-----------HHHHHHHHHHCCcCHHHHHh
Confidence 122334689999999997774333322222111111 13567788899999877744
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.081 Score=43.92 Aligned_cols=134 Identities=19% Similarity=0.098 Sum_probs=87.0
Q ss_pred EEcCcccHHHHHHHhhCC-CCeEEEE--eCCHHHHHHHH---hh---CCCCCeEE-EEcCCCCCC----CCCCCccEEEe
Q 019684 116 DVGGGTGFTTLGIVKHVD-AKNVTIL--DQSPHQLAKAK---QK---EPLKECKI-VEGDAEDLP----FPTDYADRYVS 181 (337)
Q Consensus 116 DiGcG~G~~~~~l~~~~~-~~~v~gv--D~s~~~~~~a~---~~---~~~~~~~~-~~~d~~~~~----~~~~~fD~i~~ 181 (337)
=||=|.=.++..|++.++ ..+++++ |...+..+... ++ +...++.+ ...|+.++. ...+.||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777788888888876 5666665 44443333332 11 22234433 445776654 24578999997
Q ss_pred cccccc--cCC-----------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 182 AGSIEY--WPD-----------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 182 ~~~l~~--~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
++--.- ..+ ...+++.+.++|+++|.+.++-..... ++.-.+.++.+++||..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------y~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------YDSWNIEELAAEAGLVL 147 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------CccccHHHHHHhcCCEE
Confidence 643322 001 126899999999999999987544332 24456778999999999
Q ss_pred EEEEEcCcccccccc
Q 019684 249 VQLKRIGPKWYRGVR 263 (337)
Q Consensus 249 v~~~~~~~~~~~~~~ 263 (337)
++...+...-|+++.
T Consensus 148 ~~~~~F~~~~ypgY~ 162 (166)
T PF10354_consen 148 VRKVPFDPSDYPGYE 162 (166)
T ss_pred EEEecCCHHHCCCcc
Confidence 999998876666543
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.002 Score=48.90 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=43.1
Q ss_pred CccEEEeccccccc----CC--HHHHHHHHHHhccCCCEEEEEcCCCCchhH-----hhhhhhhhccCCCHHHHHHHHHh
Q 019684 175 YADRYVSAGSIEYW----PD--PQRGIREAYRVLKLGGKACIIGPVYPTFWL-----SRYFADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 175 ~fD~i~~~~~l~~~----~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~ 243 (337)
.||+|+|..+.-++ .| ...+++.+++.|+|||.+++.-.....+.. ..........-..++.+.+.|.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 48999998877654 12 247999999999999999987432111110 11111111112356678888887
Q ss_pred --CCCcEEEEEEcC
Q 019684 244 --AGFKDVQLKRIG 255 (337)
Q Consensus 244 --aGF~~v~~~~~~ 255 (337)
.||..++.....
T Consensus 81 ~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 81 PEVGFSSVEELGVP 94 (110)
T ss_dssp TTT---EEEEE---
T ss_pred cccceEEEEEcccC
Confidence 599988765544
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.022 Score=53.09 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=63.4
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++++||=.||| .|..+..+++..+..+|+++|.+++.++.+++.....-+.....++.+.....+.+|+|+-...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 67899999987 4677777777753347999999999999998753211011111122221111234888874322
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ...+..+.+.|++||++++...
T Consensus 245 -~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 2467788999999999998764
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.013 Score=51.55 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=69.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---------CCeEEEEcCCCC---CCCCCCC-c
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIVEGDAED---LPFPTDY-A 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~---~~~~~~~-f 176 (337)
...+|||+|+|+|..++.++.. .+.+|+-.|+.. .++..+.+... ..+.....+-.. ..+.... |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH-hcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4568999999999777766665 478999999844 33333322111 123333333222 1122233 9
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
|+|++..++.+......+..-+...|..+|.+++..+..
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 999999999998888889999999999999776665543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.028 Score=52.63 Aligned_cols=100 Identities=25% Similarity=0.342 Sum_probs=70.4
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CC-CCC-CCCC-CCccEEEeccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DA-EDL-PFPT-DYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~-~~~-~~~~-~~fD~i~~~~~ 184 (337)
++.+|+=+|||+ |.++..+++..+..+|+.+|.++.-++.|++......+..... +. ... .... ..+|+++-...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 445999999996 8888888888878999999999999999998543221111111 11 000 1112 25999986544
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
....+.++.+.++|||.+.+.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 3358899999999999999886543
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.036 Score=47.35 Aligned_cols=103 Identities=14% Similarity=0.021 Sum_probs=63.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC--CeEEEEeCCHHHHHHHHhhCCC-------------------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL------------------------------- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~------------------------------- 156 (337)
.+-++-|.+||.|.++..+.-.++. ..|+|.|+++++++.|++|+.-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4568999999999998887766543 5799999999999999875310
Q ss_pred --------------CCeEEEEcCCCCCC-----CCCCCccEEEecccccccCCH---------HHHHHHHHHhccCCCEE
Q 019684 157 --------------KECKIVEGDAEDLP-----FPTDYADRYVSAGSIEYWPDP---------QRGIREAYRVLKLGGKA 208 (337)
Q Consensus 157 --------------~~~~~~~~d~~~~~-----~~~~~fD~i~~~~~l~~~~~~---------~~~l~~~~~~LkpgG~l 208 (337)
......+.|+.+.. ......|+|+..--..+..++ ..+|+.++.+|.+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 11456778886621 122336999985444444443 36999999999656666
Q ss_pred EEEc
Q 019684 209 CIIG 212 (337)
Q Consensus 209 ~i~~ 212 (337)
.+++
T Consensus 211 ~v~~ 214 (246)
T PF11599_consen 211 AVSD 214 (246)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6644
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.025 Score=53.67 Aligned_cols=102 Identities=24% Similarity=0.312 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-----C-CC-CCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-----L-PF-PTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-----~-~~-~~~~fD~i~ 180 (337)
.++.+||.+|||. |..+..+++..+..+++++|.+++..+.+++... ..++...-.+ + .+ ....+|+|+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---AETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---cEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 4788999999998 8899999988744469999999999999987632 1222111110 1 11 223589888
Q ss_pred ecccc---------------cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSI---------------EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l---------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-...- +-..+....+.++.+.|+|+|.+++...
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 74321 1124456688999999999999988753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.032 Score=56.85 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=79.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-------C-----CCeEEEEeCCH---HHHHHHHhhC--------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQSP---HQLAKAKQKE-------------------- 154 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~s~---~~~~~a~~~~-------------------- 154 (337)
+.-+|||+|-|+|.......+.. | ..+++++|..| +.+..+.+..
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999776655433 2 36899999643 3333332110
Q ss_pred ------CCC--CeEEEEcCCCC-CCCCCCCccEEEecccc-cccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhh
Q 019684 155 ------PLK--ECKIVEGDAED-LPFPTDYADRYVSAGSI-EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (337)
Q Consensus 155 ------~~~--~~~~~~~d~~~-~~~~~~~fD~i~~~~~l-~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 222 (337)
... .+++..+|+.+ ++--...||+++.-..- ..-++. ..+++++.++++|||.+.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~----------- 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF----------- 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe-----------
Confidence 001 24466688743 33223569999974322 122222 47999999999999998632
Q ss_pred hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.....++..|.++||++.....++
T Consensus 206 ---------t~a~~vr~~l~~~GF~v~~~~~~g 229 (662)
T PRK01747 206 ---------TSAGFVRRGLQEAGFTVRKVKGFG 229 (662)
T ss_pred ---------ehHHHHHHHHHHcCCeeeecCCCc
Confidence 245668889999999877654443
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.12 Score=47.77 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC----CCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCCC---------CC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLP---------FP 172 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~~---------~~ 172 (337)
+++.+|||.+.-.|.-+..+.+..- ...|++-|.++.-+...... ....++.+...|+...| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 5899999999999998887777632 23799999998766655543 33345555555554333 12
Q ss_pred CCCccEEEec------ccccccCCH-----------------HHHHHHHHHhccCCCEEEEEcCCCCc
Q 019684 173 TDYADRYVSA------GSIEYWPDP-----------------QRGIREAYRVLKLGGKACIIGPVYPT 217 (337)
Q Consensus 173 ~~~fD~i~~~------~~l~~~~~~-----------------~~~l~~~~~~LkpgG~l~i~~~~~~~ 217 (337)
...||-|++- .++.+-++. -+++.+..++||+||.++-++.....
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 3469998871 122222211 16899999999999999999876554
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.033 Score=43.47 Aligned_cols=71 Identities=13% Similarity=-0.025 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
.+++|+|||.+-|..++.++-. +...|+++++++...+..+++....++-=......+++-.-+.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 6899999999999999999887 4568999999999999998876543321111111234434456888775
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.051 Score=49.32 Aligned_cols=101 Identities=21% Similarity=0.268 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC--CCCC------CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD--AEDL------PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d--~~~~------~~~~~~fD~i 179 (337)
+.+.+||-+|+|+ |..+...++.++..+|+.+|+++..++.|++... ..+...... ..++ -..+..+|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga-~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGA-TVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCC-eEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 4899999999996 7777888888888999999999999999998432 222211111 1110 1233458888
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+....+ +..++.....+++||.+++.....+
T Consensus 247 ~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 865444 3567778899999999888765443
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.007 Score=49.18 Aligned_cols=131 Identities=18% Similarity=0.065 Sum_probs=78.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHH-HHhhCCCCCe-EEEEcCCC-CCCCCCCCccEEEecccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-AKQKEPLKEC-KIVEGDAE-DLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~-~~~~~d~~-~~~~~~~~fD~i~~~~~l~~ 187 (337)
+++++-+|+.. -|...++-.++..++..+|.++--++. .+ .++ ++...|+. ++....++||.+.|.++++|
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~-----dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh 75 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFR-----DRLSSILPVDFAKNWQKYAGSFDFAASFSSIEH 75 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcccc-----cccccccHHHHHHHHHHhhccchhhheechhcc
Confidence 56788888874 455555555566778888875421111 11 111 12222331 11123467999999999998
Q ss_pred cC-----CH------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 188 WP-----DP------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 188 ~~-----~~------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.. || .+.+.++.++|||||.+++.-|...+.... +. ++.+....+.-++ .||+.++....
T Consensus 76 ~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~f----Na-hRiYg~~rL~mm~--~gfe~i~tfs~ 146 (177)
T PF03269_consen 76 FGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQF----NA-HRIYGPIRLAMMF--YGFEWIDTFSG 146 (177)
T ss_pred ccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEE----ec-ceeecHhHHHHHh--CCcEEEeeecc
Confidence 72 22 378899999999999999987765432111 11 1233444554444 48988877554
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.21 Score=44.77 Aligned_cols=138 Identities=15% Similarity=0.148 Sum_probs=87.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCCCC--------CCCCCcc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLP--------FPTDYAD 177 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~--------~~~~~fD 177 (337)
..|+.+|||-=.-...+... ++.+++=+|. |++++.-++.+. ..+..++..|+.+.+ +..+.--
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 46999999986665554322 2467777787 555554444432 356788888885211 2122344
Q ss_pred EEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCC-chh----Hhhhh-------hhhhccCCCHHHHHHHHHh
Q 019684 178 RYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP-TFW----LSRYF-------ADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 178 ~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-~~~----~~~~~-------~~~~~~~~~~~~~~~~l~~ 243 (337)
++++-.++.+++.. .++++.+.+...||+.+++...... ... ..... ...+....+.+++.++|++
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAE 240 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHH
Confidence 77788888888764 4799999999889999887533221 100 01100 0111223578999999999
Q ss_pred CCCcEEEE
Q 019684 244 AGFKDVQL 251 (337)
Q Consensus 244 aGF~~v~~ 251 (337)
.||+....
T Consensus 241 ~Gw~~~~~ 248 (260)
T TIGR00027 241 RGWRASEH 248 (260)
T ss_pred CCCeeecC
Confidence 99998766
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.39 Score=43.38 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=75.2
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC--CCCccEEEeccccccc-
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP--TDYADRYVSAGSIEYW- 188 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~--~~~fD~i~~~~~l~~~- 188 (337)
+|+|+-||.|.+...+.+. +.+ +.++|+++.+++..+.+.... .+.+|+.++... ...+|+++...--..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~---~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK---LIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC---CccCccccCchhhcCCCCCEEEeCCCChhhh
Confidence 6899999999998888776 455 677999999999999886422 566788665432 3469999984322211
Q ss_pred --------CCHH-HHHHHH---HHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 189 --------PDPQ-RGIREA---YRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 189 --------~~~~-~~l~~~---~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
.|.. .++.++ .+.++|. +++.|....-.... .-...+.+.+.|++.||.+...
T Consensus 77 ~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~--------~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 77 IAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHD--------NGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred HHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccC--------chHHHHHHHHHHHhCCcEEEEE
Confidence 2222 233333 3334554 33333322211000 0113467888899999985333
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.59 Score=40.97 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=69.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC----CeEEEEeCCHHHHHHHHhhC--CCCC--eEEEEcCCCC----CCCCCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQKE--PLKE--CKIVEGDAED----LPFPTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~----~~v~gvD~s~~~~~~a~~~~--~~~~--~~~~~~d~~~----~~~~~~~fD 177 (337)
.+...+|+|+|+..-+..+.+.+.. .+++.+|+|...++...+.. ..++ +.-+++|.+. +| ..++==
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 4789999999999888777766533 78999999998886654432 2233 4456677632 23 122223
Q ss_pred EEEecccccccCC-H-HHHHHHHHHhccCCCEEEEE
Q 019684 178 RYVSAGSIEYWPD-P-QRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 178 ~i~~~~~l~~~~~-~-~~~l~~~~~~LkpgG~l~i~ 211 (337)
.++....+..+.. . ..++.++...|.||-++++-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3445566666642 2 47999999999999999885
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.056 Score=46.93 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=74.6
Q ss_pred hHHHHHHhc---cccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCH----HHHHHHHhhCCCCCeEEEEcC
Q 019684 94 TEDMRDDAL---EPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSP----HQLAKAKQKEPLKECKIVEGD 165 (337)
Q Consensus 94 ~~~~~~~~l---~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~~~d 165 (337)
...++..++ +.+.+ +++.+||-+|.++|.....+.+-. |..-|++++.|+ +.+..|+++ .|+..+..|
T Consensus 138 rSKLAA~I~gGvdnihi-kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiED 213 (317)
T KOG1596|consen 138 RSKLAAGILGGVDNIHI-KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIED 213 (317)
T ss_pred HHHHHHHhhcCccceee-cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeecc
Confidence 444554443 33334 589999999999999988887765 567899999986 445555543 678888888
Q ss_pred CCCCC---CCCCCccEEEecccccccCCHH-HHHHHHHHhccCCCEEEEE
Q 019684 166 AEDLP---FPTDYADRYVSAGSIEYWPDPQ-RGIREAYRVLKLGGKACII 211 (337)
Q Consensus 166 ~~~~~---~~~~~fD~i~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~i~ 211 (337)
+.... ..-.-.|+|++.-. .+|.. -+.-++...||+||.++++
T Consensus 214 ArhP~KYRmlVgmVDvIFaDva---qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred CCCchheeeeeeeEEEEeccCC---CchhhhhhhhhhhhhhccCCeEEEE
Confidence 86522 12234666665321 12322 3566788999999999886
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.023 Score=48.90 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=66.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----C-C----CeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV----D-A----KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FP 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~----~-~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~ 172 (337)
.-.+|+|+..-.|.|+..+.+++ + . ..+++||+-+- +.-+++.-+++|+.... |.
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI~GV~qlq~DIT~~stae~Ii~hfg 112 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------APIEGVIQLQGDITSASTAEAIIEHFG 112 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------CccCceEEeecccCCHhHHHHHHHHhC
Confidence 45789999999999999988764 1 1 23999998432 22256788899997642 55
Q ss_pred CCCccEEEecc-----cccccCCHH------HHHHHHHHhccCCCEEEE
Q 019684 173 TDYADRYVSAG-----SIEYWPDPQ------RGIREAYRVLKLGGKACI 210 (337)
Q Consensus 173 ~~~fD~i~~~~-----~l~~~~~~~------~~l~~~~~~LkpgG~l~i 210 (337)
.++.|+|+|.. .+|.++... ..|.-...+|||||.++-
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 67899999953 344444331 456677789999999974
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.041 Score=50.77 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=76.8
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC---CeEEEEcCCCCCCC-CCCCccEEEeccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPF-PTDYADRYVSAGSIE 186 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~~~d~~~~~~-~~~~fD~i~~~~~l~ 186 (337)
..+|||.=+|+|.=++.++.+.+..+++.-|+||.+.+.+++|...+ +...+..|+..+-. ....||+|= +.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----cC
Confidence 67899999999999999999877669999999999999999986544 44555567644321 135688875 33
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
-+..|.-++..+.+.++.||.+.++.
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 44566779999999999999999973
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.033 Score=49.77 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=76.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCCC--CCCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDL--PFPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~--~~~~~~fD~i~ 180 (337)
..++||-||.|.|...+....+-.-.++.-+|++...++..++-. ..+++....+|...+ ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 678999999999999988887733357888999998888887643 236688888886332 13367899999
Q ss_pred ecccccccCC----HHHHHHHHHHhccCCCEEEEEcCC
Q 019684 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.-..=.-.+. .+..+.-+.+.||+||+++....+
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 6322111111 135788899999999999988644
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.12 Score=50.55 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC----CCeEEEEeCCHHHHHHHHhhCCCCCe----EEEEcCCCCCC-C----CCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKEC----KIVEGDAEDLP-F----PTDY 175 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~d~~~~~-~----~~~~ 175 (337)
.+..+|.|..||+|.+.....+.+. ...++|.|+++.....|+.+..-.++ ....+|-..-| . ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 3667999999999999887766542 26799999999999999987433332 33444442222 2 3367
Q ss_pred ccEEEeccccc---ccC---------------------C-HHHHHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSAGSIE---YWP---------------------D-PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~~~l~---~~~---------------------~-~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
||.|+++--+. +.. . ....+.++...|+|||+..++-+
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 99999842221 110 0 13689999999999987776644
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.13 Score=41.30 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=73.9
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAED 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~~~ 168 (337)
-+.+..+.++..+.-. +..+.+|+|+|.|......++. .-...+|+++++-.+..++-+. ....+.|..-|+-.
T Consensus 56 AtteQv~nVLSll~~n-~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 56 ATTEQVENVLSLLRGN-PKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred ccHHHHHHHHHHccCC-CCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 3455556666666543 5578999999999999887777 2367899999999888877432 23457788888766
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
..+.+-.+-+|+ .+-.-++|. -.++..-+..|..++-.-+..+
T Consensus 134 ~dl~dy~~vviF--gaes~m~dL---e~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 134 VDLRDYRNVVIF--GAESVMPDL---EDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred ccccccceEEEe--ehHHHHhhh---HHHHHhhCcCCCeEEEEecCCC
Confidence 555554343343 332223443 3344445666777765544333
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.1 Score=50.98 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC--------------------
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-------------------- 168 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-------------------- 168 (337)
++.+||=+|+|. |..+..++... ++.|+++|.++..++.+++. +.+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----GAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCeEEeccccccccccccceeecCHHHHHHH
Confidence 578999999996 56666667765 67899999999998888863 22333322211
Q ss_pred ---CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 169 ---LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 169 ---~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
++-.-..+|+|+..-.+..-+.|.-+.+++.+.+|||+.++-.
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 0111245999988776666566666889999999999997643
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.065 Score=48.66 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=49.7
Q ss_pred CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
|...-..+.+.++.... .+|+.|||.-||+|..+....+. +-+.+|+|++++..+.|++++.
T Consensus 190 Pt~kP~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 190 PTQKPEALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred cccChHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 33444566666665543 48999999999999999987776 7899999999999999998853
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.053 Score=46.91 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh
Q 019684 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (337)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 152 (337)
+......+.+.++.... .+++.|||.=||+|..+....+. +-+.+|+|+++...+.|++
T Consensus 173 ~~~kP~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 34455566666665543 57899999999999999987777 7899999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.085 Score=46.97 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=50.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCC--------CCeEEEEeCCHHHHHHHHhhCCC---------CCeEEEEcCCCCCCCCC
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---------KECKIVEGDAEDLPFPT 173 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~ 173 (337)
.-+|+|+|.|+|.++..+.+... ..+++.||+|+.+.+.-++++.. .++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 46999999999999999877542 36899999999998888877654 12444 33444433
Q ss_pred CCccEEEecccccccC
Q 019684 174 DYADRYVSAGSIEYWP 189 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~ 189 (337)
..-+|+++.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 356777887777776
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.064 Score=48.63 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--------------------CCCeEEEEeCCH--HHHHHHHhhCCC-----------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--------------------DAKNVTILDQSP--HQLAKAKQKEPL----------- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--------------------~~~~v~gvD~s~--~~~~~a~~~~~~----------- 156 (337)
+..+||-||.|.|.=...++..+ +..+++.||+.+ ..++........
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987666655443 125899999975 444443322111
Q ss_pred ---------CCeEEEEcCCCCCCCCC-------CCccEEEeccccccc-----CCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 157 ---------KECKIVEGDAEDLPFPT-------DYADRYVSAGSIEYW-----PDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 157 ---------~~~~~~~~d~~~~~~~~-------~~fD~i~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
-++.|.+.|+..+..++ ...|+|...+.+..+ ..--++|.++...++||-.|+|++..
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 24789999997654322 246888776666533 22347999999999999999998753
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.028 Score=50.09 Aligned_cols=104 Identities=17% Similarity=0.102 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh-------C---CCCC---eEEEEcCCCCCCC-C
Q 019684 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-------E---PLKE---CKIVEGDAEDLPF-P 172 (337)
Q Consensus 107 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~-------~---~~~~---~~~~~~d~~~~~~-~ 172 (337)
..-.+++|||+|||+|.-.+..... ....+...|.|...++...-. + ...+ ......+..++-+ .
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred eEecCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 3347899999999999988887766 237888889988777322210 0 0011 1111221112111 1
Q ss_pred CC--CccEEEecccccccCCHHHH-HHHHHHhccCCCEEEEE
Q 019684 173 TD--YADRYVSAGSIEYWPDPQRG-IREAYRVLKLGGKACII 211 (337)
Q Consensus 173 ~~--~fD~i~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~i~ 211 (337)
.+ +||+|.++..+...+..+.+ .......++++|.+++.
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 12 79999999888877766666 66667777888888764
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.085 Score=46.08 Aligned_cols=74 Identities=24% Similarity=0.250 Sum_probs=45.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh-------hCCC-----CCeEEEEcCCCC-CCCCCCCccE
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------KEPL-----KECKIVEGDAED-LPFPTDYADR 178 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-------~~~~-----~~~~~~~~d~~~-~~~~~~~fD~ 178 (337)
.+|||.=+|-|..+..++.. |++|+++|-||.+....+. .... .+++++.+|..+ +..++.+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999999999876 7899999999876554442 1111 368999999865 5556789999
Q ss_pred EEecccccc
Q 019684 179 YVSAGSIEY 187 (337)
Q Consensus 179 i~~~~~l~~ 187 (337)
|+.--++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 999877765
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.035 Score=53.01 Aligned_cols=101 Identities=18% Similarity=0.303 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCCCC----eEEEEcCCCCC----CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDAEDL----PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~d~~~~----~~~~~~fD~i 179 (337)
.++-+|||.=|++|.-++..+.+.|+ .+|++-|.++..++..+++...++ ++....|+..+ +.....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 36789999999999999999999887 579999999999999888765443 44455665322 3335679999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-+ .-...+..+|+.+.+.++.||.|.++..
T Consensus 188 DL----DPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DL----DPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ec----CCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 73 3444567899999999999999999743
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.12 Score=49.79 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=79.1
Q ss_pred HHHHHHhccccCCCCC--CCEEEEEcCcccHHHHHHHhh----CCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcC
Q 019684 95 EDMRDDALEPADLSNR--NMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGD 165 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~--~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d 165 (337)
+.+...+++..+-..+ ...|+-+|.|-|-+.....+. ....++++++-+|.++-..+..- -..+++.+..|
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~D 429 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSD 429 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEecc
Confidence 3344444444332222 457889999999876654332 12478999999999887666432 23569999999
Q ss_pred CCCCCCCCCCccEEEecccccccCCH---HHHHHHHHHhccCCCEEEE
Q 019684 166 AEDLPFPTDYADRYVSAGSIEYWPDP---QRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 166 ~~~~~~~~~~fD~i~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i 210 (337)
+.+++-+..+.|++++- .|..+.|- .+-|..+.+.|||+|..+=
T Consensus 430 MR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 430 MRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 99988556789999863 34444443 4789999999999987754
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.13 Score=45.15 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=48.7
Q ss_pred CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
+...-..+.+.++.... .+|+.|||.=||+|..+....+. +-+++|+|++++..+.+.++..
T Consensus 145 p~~kP~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 145 PTEKPVTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCcHHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHH
Confidence 44455566666665433 47899999999999999987776 7899999999999999987653
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.11 Score=47.60 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh-------hCC----CC-CeEEEEcCCCCCCC-CCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------KEP----LK-ECKIVEGDAEDLPF-PTDY 175 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-------~~~----~~-~~~~~~~d~~~~~~-~~~~ 175 (337)
.+|+-|.|-=.|||.++...+.- |+-|+|.|++-.++...+. |.. .+ -+.++.+|....+. ....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 58999999999999999887776 8999999999888774322 111 11 15678888866553 3567
Q ss_pred ccEEEec------------------------ccccccCCH---------HHHHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSA------------------------GSIEYWPDP---------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~------------------------~~l~~~~~~---------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
||.|+|. .--.|.+.. ...+.=..++|..||++++--+
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 9999991 111233321 1467777899999999988644
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.56 Score=43.06 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC------CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL------PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~------~~~~~~fD~i~~ 181 (337)
.++.+||..|+| .|..+..+++.. +.+|++++.++...+.+++... +.+..+-... ....+.+|+++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGA----DEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCC----CEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 467899998886 478888888875 6789999999999988865322 2222111110 123456898874
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... ....++++.+.|+++|.++....
T Consensus 239 ~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 239 FVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 321 13578889999999999987643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.29 Score=45.67 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=61.0
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeC---CHHHHHHHHhhCCCCCeEEEE---cCCCCCCCCCCCccEEEec
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQ---SPHQLAKAKQKEPLKECKIVE---GDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~~---~d~~~~~~~~~~fD~i~~~ 182 (337)
++.+||=+|+|. |.++..+++.. +.+|++++. ++.-.+.+++... +++. .|..+. ...+.+|+|+-.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga----~~v~~~~~~~~~~-~~~~~~d~vid~ 245 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGA----TYVNSSKTPVAEV-KLVGEFDLIIEA 245 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCC----EEecCCccchhhh-hhcCCCCEEEEC
Confidence 678999999874 77777777775 568999986 6778887775422 2221 111110 112358888854
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. . ...+.+..+.|++||++++...
T Consensus 246 ~g-----~-~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 246 TG-----V-PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cC-----C-HHHHHHHHHHccCCcEEEEEec
Confidence 32 1 2467888999999999988754
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.12 Score=45.19 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=47.5
Q ss_pred EEEEcCCCCC--CCCCCCccEEEecccc----cc-----c--C---C-HHHHHHHHHHhccCCCEEEEEcCCCCchhHhh
Q 019684 160 KIVEGDAEDL--PFPTDYADRYVSAGSI----EY-----W--P---D-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (337)
Q Consensus 160 ~~~~~d~~~~--~~~~~~fD~i~~~~~l----~~-----~--~---~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 222 (337)
+++.+|..+. .++++++|+|+..--. .. + . + ....+.+++|+|||||.+++.....
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------- 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------- 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-------
Confidence 4566666443 3667778888774111 00 0 0 1 1368899999999999987642211
Q ss_pred hhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
....+...++++||.......
T Consensus 76 ----------~~~~~~~al~~~GF~l~~~Ii 96 (227)
T PRK13699 76 ----------RVDRFMAAWKNAGFSVVGHLV 96 (227)
T ss_pred ----------cHHHHHHHHHHCCCEEeeEEE
Confidence 123456678999998766543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.38 Score=44.74 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
+++++||=+|||. |.++..+++. .++.+|+++|.+++-++.+++ +. ......+. . .+..+|+|+-.-.-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---~~~~~~~~---~-~~~g~d~viD~~G~- 232 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---ETYLIDDI---P-EDLAVDHAFECVGG- 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---ceeehhhh---h-hccCCcEEEECCCC-
Confidence 4689999999874 5566666664 456789999999988888875 21 11111111 1 11248888743221
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
......+.+..+.|++||++++...
T Consensus 233 --~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 --RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --CccHHHHHHHHHhCcCCcEEEEEee
Confidence 0123578889999999999988753
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.12 Score=48.73 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=71.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCC----C-CeEEEEcCCCCCC-CCCCCccEEEecc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL----K-ECKIVEGDAEDLP-FPTDYADRYVSAG 183 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~----~-~~~~~~~d~~~~~-~~~~~fD~i~~~~ 183 (337)
.-+|||.=+|+|.=++..+.+.++ .+|+.-|+|+++++..++|... . .+++...|+..+- .....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID--- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID--- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE---
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE---
Confidence 468999999999999998888544 6899999999999999987432 2 4677788875432 2456799997
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+.-+..+..++..+.+.++.||.|.++..
T Consensus 127 -lDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 127 -LDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -E--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred -eCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 44455677899999999999999999844
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.07 Score=41.98 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=50.5
Q ss_pred eEEEEcCCCC-CCCCCCCccEEEecccccccCCH----HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCC
Q 019684 159 CKIVEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (337)
Q Consensus 159 ~~~~~~d~~~-~~~~~~~fD~i~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (337)
+++..+|+.+ ++--+..||+|+... +.--.++ ..+++++.++++|||.+.-.. .
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------~ 91 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------S 91 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------c
Confidence 5677888843 332236799999754 2222333 479999999999999886422 3
Q ss_pred HHHHHHHHHhCCCcEEEEEEcCc
Q 019684 234 EEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 234 ~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
...++..|.++||.+....-++.
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g~ 114 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFGR 114 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-STT
T ss_pred hHHHHHHHHHcCCEEEEcCCCCC
Confidence 35688899999999888877653
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.2 Score=42.03 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=75.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~ 178 (337)
++..|+|+|.-.|..++.++... ...+|+++|++-..++.+... .+++.|+.++-.+.. ...+.--+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--VPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 56789999999998887776532 137999999987665444332 378999999886642 22333345
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT 217 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 217 (337)
.++-..-|+....-..++-..++|.-|-++++.+...+.
T Consensus 147 fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 147 FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 556666676666667888888999999999998765543
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.26 Score=38.60 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=60.9
Q ss_pred cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C-CCCCCccEEEecccccccCCHHH
Q 019684 120 GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYVSAGSIEYWPDPQR 193 (337)
Q Consensus 120 G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~i~~~~~l~~~~~~~~ 193 (337)
|.|..+..+++..+ .+|+++|.++.-++.+++... ..++..+-.++ . ..+..+|+|+-.-. -..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcc---cccccccccccccccccccccccceEEEEecC------cHH
Confidence 56888999999875 999999999999999987542 11222211111 1 22346999985322 246
Q ss_pred HHHHHHHhccCCCEEEEEcCCC
Q 019684 194 GIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 194 ~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
.++.....|+|+|++++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8899999999999999987654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.046 Score=41.37 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=26.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~ 142 (337)
+...-.|||||+|.+.--|..+ |..-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4567889999999999888888 788889997
|
; GO: 0008168 methyltransferase activity |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.5 Score=43.24 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=58.3
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++++||=+||| .|.++..+++..+...++++|.++..++.+.+.. . .|..+. ....+|+|+-...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------~--i~~~~~--~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------V--LDPEKD--PRRDYRAIYDASG---- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------c--cChhhc--cCCCCCEEEECCC----
Confidence 56789989987 4778888888764444778899888777665321 1 111110 1235898874322
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-...+..+.+.|+++|++++...
T Consensus 210 --~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 --DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --CHHHHHHHHHhhhcCcEEEEEee
Confidence 23467888999999999998754
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.53 Score=43.40 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=60.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcC---CCCCCCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGD---AEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d---~~~~~~~~~~fD~i~~~~~ 184 (337)
++.+||-.|||. |..+..+++.. +. ++++++.++...+.+++... . .++..+ ........+.+|+++....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGA-D--ETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCC-C--EEEcCCchhhhhhhccCCCccEEEECCC
Confidence 678999998876 77777777775 55 79999999988887665321 1 112111 1111112234899886432
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. ...++++.+.|+++|+++...
T Consensus 241 ~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 A------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 245788899999999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.97 Score=41.78 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+++++||=.|+| .|..+..+++.. +.++++++.+++-.+.+++.... .+. |..+. ..+.+|+++.....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~----~vi-~~~~~--~~~~~d~~i~~~~~-- 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAA----SAG-GAYDT--PPEPLDAAILFAPA-- 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCc----eec-ccccc--CcccceEEEECCCc--
Confidence 478999999975 456666777775 67899999999999888875431 111 11111 12347876543221
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...+....+.|++||++++...
T Consensus 234 ----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----HHHHHHHHHhhCCCcEEEEEec
Confidence 2468889999999999988764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.71 Score=40.62 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~i~ 180 (337)
.++.+||..|+|+ |..+..+++.. +.++++++.++...+.+++... . .++ |..+.. ...+.+|+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~-~--~~~--~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGA-D--HVI--DYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCC-c--eec--cCCcCCHHHHHHHhcCCCCCEEE
Confidence 4788999999985 77777777765 5899999999988888765421 1 111 111111 1235699998
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.... . ...+..+.+.|+++|.++....
T Consensus 207 ~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 207 DAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 5422 1 1467778899999999987654
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.51 Score=44.10 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C-CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~i~ 180 (337)
.++++||=.|||. |..+..+++.. +. +|+++|.++...+.+++... . .++...-.+. . .....+|+|+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGA-T--HTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC-c--eEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 4789999999864 66777777775 55 59999999999999876432 1 1111110110 0 1223589887
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-.. .. ...++...+.+++||++++...
T Consensus 251 d~~-----g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 251 DAV-----GR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ECC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 432 12 2467778899999999998754
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.38 Score=43.61 Aligned_cols=98 Identities=22% Similarity=0.197 Sum_probs=73.2
Q ss_pred CCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 111 NMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 111 ~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
+.+|.-||.|. |..+..++--. +++|+.+|+|..-+........ .++.....+...+...-.+.|+++..-.+.--.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~-~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG-GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC-ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 45677888884 77777666654 7899999999988887776543 345555555443332335699999887777778
Q ss_pred CHHHHHHHHHHhccCCCEEEE
Q 019684 190 DPQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i 210 (337)
.|.-+.+++...+|||+.++=
T Consensus 246 aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 246 APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CceehhHHHHHhcCCCcEEEE
Confidence 888999999999999999864
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.24 Score=46.80 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=55.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCC-CCCccEEEeccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP-TDYADRYVSAGSIE 186 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~ 186 (337)
..|||||+|||.++...++. ++-.|++++.-..|.+.|++.... ++++++.---.++... ....|+++.-...-
T Consensus 68 v~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdt 146 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDT 146 (636)
T ss_pred EEEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhh
Confidence 46999999999999887777 355799999999999999865432 4466655433333211 22356555422221
Q ss_pred cc--CCHHHHHHHHHHhcc
Q 019684 187 YW--PDPQRGIREAYRVLK 203 (337)
Q Consensus 187 ~~--~~~~~~l~~~~~~Lk 203 (337)
.+ ...-..++++++.|.
T Consensus 147 EligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhccccchhHHHHHHHhc
Confidence 11 111235666666554
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.48 Score=44.54 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCCC-CCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLP-FPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~i~~~~~ 184 (337)
+++++||=.|+|. |..+..+++.. +. +|+++|.++..++.+++.....-+.....|. +.+. ...+.+|+|+-...
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 3788999899863 66777777775 55 6999999999999887643211011111111 0000 11225888874321
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
....+....+.|+++|++++...
T Consensus 269 ------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 ------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 12467788899999999988754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.2 Score=42.20 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=60.3
Q ss_pred CCCEEEEEcCcccH----HHHHHHhhC---CCCeEEEEeC----CHHHHHHHHhhCC----CCC--eEEEE---cCCCCC
Q 019684 110 RNMLVVDVGGGTGF----TTLGIVKHV---DAKNVTILDQ----SPHQLAKAKQKEP----LKE--CKIVE---GDAEDL 169 (337)
Q Consensus 110 ~~~~VLDiGcG~G~----~~~~l~~~~---~~~~v~gvD~----s~~~~~~a~~~~~----~~~--~~~~~---~d~~~~ 169 (337)
+.-+|+|+|.|.|. +...|+.+. |..++|||+. +...++.+.+++. .-+ .+|.. .+.+++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 45689999999985 333444432 4589999999 7777766665532 123 33433 233333
Q ss_pred -----CCCCCCccEEEecccccccCC-------HHHHHHHHHHhccCCCEEEEE
Q 019684 170 -----PFPTDYADRYVSAGSIEYWPD-------PQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 170 -----~~~~~~fD~i~~~~~l~~~~~-------~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...++..=+|.+...+||+.+ +...+-+..+.|+|.-.+++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 123343445556777788853 223344556688998666554
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.69 Score=44.17 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=67.5
Q ss_pred CCCEEEEEcCccc--HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcC--C--CCCCCC-CCCccEEE
Q 019684 110 RNMLVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGD--A--EDLPFP-TDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G--~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d--~--~~~~~~-~~~fD~i~ 180 (337)
..+.+.|+|.|.| .++......--.-.++.||.|..|......+... .+-..+... + ..+|.. ...||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4567888888765 4444444432235788999999999988876543 111111111 1 123433 34599999
Q ss_pred ecccccccCCHH---HH-HHHHHHhccCCCEEEEEcCCCC
Q 019684 181 SAGSIEYWPDPQ---RG-IREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 181 ~~~~l~~~~~~~---~~-l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+.+.++++.+.. .+ -....+..++|+.+++++....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999997753 23 3344566788999999876543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.32 Score=45.01 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=37.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----C----CCeEEEEeCCHHHHHHHHhhCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV----D----AKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~----~----~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
..-.++|+|.|+|.++..+.+.. | ..++..|++|++..+.=++++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 45689999999999999887643 3 5899999999998877766543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=91.96 E-value=2.8 Score=31.94 Aligned_cols=102 Identities=22% Similarity=0.223 Sum_probs=62.9
Q ss_pred CcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecccccccCCHH
Q 019684 119 GGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSIEYWPDPQ 192 (337)
Q Consensus 119 cG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~l~~~~~~~ 192 (337)
||.|..+..+++.+ .+.+|+.+|.+++..+.+++. ...++.+|..+.. ..-.+.|.+++.. ++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----GVEVIYGDATDPEVLERAGIEKADAVVILT-----DDDE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TSEEEES-TTSHHHHHHTTGGCESEEEEES-----SSHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----ccccccccchhhhHHhhcCccccCEEEEcc-----CCHH
Confidence 45556666655543 345899999999999988864 4679999997642 2224577777542 2333
Q ss_pred --HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 193 --RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 193 --~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
..+....+.+.|...++..... .+..+.|+++|...+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~~--------------------~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVND--------------------PENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEESS--------------------HHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEECC--------------------HHHHHHHHHCCcCEE
Confidence 3444556667788887765322 334567777776543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.61 Score=41.97 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCC-C-CCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL-P-FPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~-~-~~~~~fD~i~~~~~ 184 (337)
++.+||=+|+| .|..+..+++.. +. +|+++|.++.-++.+++.....-+.. .+. ... . .....+|+++-...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~--~~~~~~~~~~~~~~g~d~vid~~G 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEP--EVLAERQGGLQNGRGVDVALEFSG 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCc--hhhHHHHHHHhCCCCCCEEEECCC
Confidence 68899999886 366667777775 55 49999999998888886532110100 110 000 0 11235888874321
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
....++++.+.|+|+|++++...
T Consensus 197 ------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------ChHHHHHHHHHhcCCCEEEEecc
Confidence 13467888999999999998764
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.9 Score=39.93 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=80.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---CCCCCccEEEeccccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSIE 186 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~~l~ 186 (337)
..+++|+-||.|.+..-+... +.+ +.++|+++..++.-+.+... ..++..|+.+.. +....+|+++...--.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~--~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH--GDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC--CceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 367999999999999888877 555 55799999999988887653 455666765433 1111689999843332
Q ss_pred cc---------CCHH----HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCc
Q 019684 187 YW---------PDPQ----RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247 (337)
Q Consensus 187 ~~---------~~~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 247 (337)
.+ .|+. --+.++...++| .+++.+....-.. . .-...+.+.+.|++.||.
T Consensus 79 ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~--~-------~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 79 DFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLS--S-------KGQTFDEIKKELEELGYG 141 (328)
T ss_pred chhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHh--c-------CchHHHHHHHHHHHcCCc
Confidence 22 2332 345666677788 5555554322111 0 223568899999999997
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=91.62 E-value=2.2 Score=39.01 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=90.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC------CeEEEEcCCCCC--C--CC-----CCC
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECKIVEGDAEDL--P--FP-----TDY 175 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~d~~~~--~--~~-----~~~ 175 (337)
...|+-+|||--.-+..+-.. ++.+|.-+|. |+.++.=++.+... ..+++..|+.+. + +. ...
T Consensus 93 ~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWP-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccceeecCCC-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 478999999964443332222 2578888888 77776655554332 478899999632 1 22 233
Q ss_pred ccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhh-------hh-------hhhhccCCCHHHHHH
Q 019684 176 ADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSR-------YF-------ADVWMLFPKEEEYIE 239 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------~~-------~~~~~~~~~~~~~~~ 239 (337)
-=++++-.++.+++.. .++++.|..++.||-.+++............ .. ...+....+..++..
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ 250 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIET 250 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHH
Confidence 3478888889998765 4799999999999999887654222111110 00 112222356899999
Q ss_pred HHHhCCCcEEEEE
Q 019684 240 WFQKAGFKDVQLK 252 (337)
Q Consensus 240 ~l~~aGF~~v~~~ 252 (337)
++.+.||..+...
T Consensus 251 ~l~~~g~~~~~~~ 263 (297)
T COG3315 251 WLAERGWRSTLNR 263 (297)
T ss_pred HHHhcCEEEEecC
Confidence 9999999977764
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.89 Score=41.99 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=60.0
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-C-CCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-P-FPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~i~~~~~l 185 (337)
++.+||=.|+| .|..+..+++.. +.+ |+++|.+++..+.+++.....-+.....+...+ . .....+|+|+-...
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 68899999886 356666677775 566 999999999988887643211011100110001 0 12235898884321
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
....+....+.|+++|++++...
T Consensus 241 -----~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 -----NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEEcC
Confidence 22456777889999999987654
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.3 Score=41.14 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC----C-C-CCCCcc----
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----P-F-PTDYAD---- 177 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~----~-~-~~~~fD---- 177 (337)
.++.+||-.|+|. |..+..+++.. +.+++++|.+++.++.+++.....-+.....+..++ . . ....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 4789999999975 77777778775 568999999999999887643211011111110010 0 0 112344
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+|+ ..... ...+....+.|++||++++....
T Consensus 244 ~v~-----d~~g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 244 KIF-----ECSGS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred EEE-----ECCCC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 443 22222 34667788899999999987643
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.1 Score=41.66 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC---C--CCCCCCcc-EEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAED---L--PFPTDYAD-RYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~---~--~~~~~~fD-~i~ 180 (337)
.++++||=.|+|. |..+..+++.. +.+ |+++|.+++..+.+++... . .++..+-.. + ......+| +|+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGA-M--QTFNSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCC-c--eEecCcccCHHHHHHHhcCCCCCeEEE
Confidence 3688999999864 66667777775 554 7899999998888865322 1 111111000 0 01223477 544
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
- .... ...+.+..+.|++||++++...
T Consensus 235 d-----~~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 235 E-----TAGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred E-----CCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 2222 3577888999999999998754
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.14 Score=45.93 Aligned_cols=93 Identities=28% Similarity=0.409 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCcccHHHH-HHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe----EEEEcCCCCCCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTL-GIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC----KIVEGDAEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~d~~~~~~~~~~fD~i~~~~ 183 (337)
..+..|.|+=.|-|+++. .+... +...|+++|.+|..++..++++..+++ ..+.+|-.. +-++...|-|.+.
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLG- 269 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNLG- 269 (351)
T ss_pred cccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheeec-
Confidence 356889999999999998 44444 567899999999999999988765553 334455433 3445667877743
Q ss_pred cccccCCHHHHHHHHHHhccCCCE
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGK 207 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~ 207 (337)
-+|.-++-.-.+..+|||.|-
T Consensus 270 ---LlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 270 ---LLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred ---cccccccchHHHHHHhhhcCC
Confidence 455555555667788888543
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.3 Score=41.77 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC-----CCC-C-CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-----AED-L-PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d-----~~~-~-~~~~~~fD~i~ 180 (337)
+++++||=+|+|. |..+..+++..+..+|+++|.+++.++.+++... . .++..+ ..+ + ....+.+|+|+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI-T--DFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC-c--EEEecccccchHHHHHHHHhCCCCCEEE
Confidence 4789999999873 6666777777533379999999999999976432 1 122111 100 0 01122589887
Q ss_pred ecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
-... . ...+......+++| |++++...
T Consensus 274 d~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 274 ECAG-----N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ECCC-----C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 5322 2 24677788889997 99887654
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.91 Score=42.91 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-----CCCC-CC-CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-----DAED-LP-FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-----d~~~-~~-~~~~~fD~i~ 180 (337)
.++.+||-.|+|. |..+..+++..+...++++|.++...+.+++... . .++.. +..+ +. ...+.+|+|+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa-~--~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV-T--DFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-c--EEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 4789999998863 6666777777543468999999999888876432 1 11111 1100 00 1122588887
Q ss_pred ecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
-... ....+....+.+++| |++++...
T Consensus 269 d~~G------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 269 ECVG------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ECCC------ChHHHHHHHHhhccCCCEEEEECC
Confidence 4322 123567788899998 99987653
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.59 Score=43.45 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=35.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 152 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 152 (337)
+-+.|+|+|.|.|.++..+.-.+ +..|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 45789999999999999998876 7899999999777666653
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.7 Score=37.36 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+||-.|||. |..+..+++.. +.+ +++++.+++..+.+++......+ .. ..........+|+|+....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~--~~--~~~~~~~~~~~d~vl~~~~-- 168 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPV--AA--DTADEIGGRGADVVIEASG-- 168 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccc--cc--cchhhhcCCCCCEEEEccC--
Confidence 3788999899875 77777777775 566 99999999988877764311111 10 0000112345898885321
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
....+....+.|+++|.++...
T Consensus 169 ----~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ----SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ----ChHHHHHHHHHhcCCcEEEEEe
Confidence 1236778899999999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.86 Score=39.59 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC-C----eEEEEc-CC----CCCCCCCCCccE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-E----CKIVEG-DA----EDLPFPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~----~~~~~~-d~----~~~~~~~~~fD~ 178 (337)
.+.-++||||.|.--.=-.+..+--+.+.+|.|+++..++.|+.....+ + ++.... |- ..+.-.++.||+
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 3567899999987433222222212789999999999999999764322 2 343322 21 112223567999
Q ss_pred EEeccccccc
Q 019684 179 YVSAGSIEYW 188 (337)
Q Consensus 179 i~~~~~l~~~ 188 (337)
+.|+--+|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9998777643
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=89.83 E-value=2.8 Score=38.39 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-CCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-FPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD~i~~~~~l~ 186 (337)
.++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++... . .++..+-.... ...+.+|+++....
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~d~vi~~~~-- 234 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLGA-D--EVVDSGAELDEQAAAGGADVILVTVV-- 234 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhCC-c--EEeccCCcchHHhccCCCCEEEECCC--
Confidence 477899999987 677777777775 6799999999998888754321 1 11111100100 01235898875321
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. ...+..+.+.|+++|.++...
T Consensus 235 ---~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ---S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ---c-HHHHHHHHHhcccCCEEEEEC
Confidence 1 236778899999999998764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.18 Score=47.35 Aligned_cols=58 Identities=28% Similarity=0.237 Sum_probs=48.4
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC-----CeEEEEcCC
Q 019684 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIVEGDA 166 (337)
Q Consensus 107 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~d~ 166 (337)
..++|..|.|+-||.|-+++.++.. +++|++-|+++++++..+.+...+ ++..+..|+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 4468999999999999999999988 799999999999999999886532 255566665
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.18 E-value=2.3 Score=39.86 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHH-HHHhhCCCCCeEEEE-cCCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLA-KAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~-~a~~~~~~~~~~~~~-~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.++++||-.|+| .|..+..+++.. +.++++++.++.... .+++... . .++. .+...+....+.+|+|+-...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga-~--~vi~~~~~~~~~~~~~~~D~vid~~g- 256 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGA-D--SFLVSTDPEKMKAAIGTMDYIIDTVS- 256 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCC-c--EEEcCCCHHHHHhhcCCCCEEEECCC-
Confidence 368899989986 467777777775 678888888765443 3333211 1 1111 110011100124788874322
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ...+.+..+.|++||+++....
T Consensus 257 ----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 ----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 2 2367788999999999987753
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.98 Score=42.65 Aligned_cols=100 Identities=19% Similarity=0.124 Sum_probs=57.5
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++.+|+=+|+| .|..+...+... +++|+.+|.+++.++.+.+.... .+.....+..++.-.-..+|+|+..-....-
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCc-eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 45679999998 466666666665 57899999998877766544321 1111111111111011358999975422111
Q ss_pred CCHHHHHHHHHHhccCCCEEEEE
Q 019684 189 PDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+.+.-+-++..+.++||+.++-.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEE
Confidence 12222346666778999887754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.90 E-value=5.3 Score=36.51 Aligned_cols=94 Identities=20% Similarity=0.244 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC----CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~----~~~~~~fD~i~~~ 182 (337)
.++.+||-+|+| .|..+..+++.. +.+ +++++.+++..+.+++... . .++..+-.+. ....+.+|+++..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGA-T--ETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-e--EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 377899999876 366777777775 555 8899999998888765422 1 1221111110 1133568999853
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. ....+.++.+.|+++|+++...
T Consensus 234 ~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 234 TG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 21 1357788899999999998764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.8 Score=40.04 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=66.8
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-C-CC-CCCCccEEEecc
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-PF-PTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~-~~-~~~~fD~i~~~~ 183 (337)
+++++||=.|. |.|.+++.|++.... +++++--+++-.+.+++.....-+.+...|+.+ . .. ....+|+|+-.-
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 36899999984 578899999999744 777887778777777765543333444444321 1 12 223599998532
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
. ...+.+....|+++|+++......
T Consensus 220 G-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 G-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred C-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 2 246777899999999999875543
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.28 E-value=2.3 Score=39.20 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCC--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~--~~~~~~fD~i~~~~~ 184 (337)
.++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++.....-+.....+. ..+ ...+..+|+++....
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 4788999998874 77778888875 789999988888888876543111011111111 001 012345899986421
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
-...+.++.+.|+++|.++...
T Consensus 237 ------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 ------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1346788899999999988764
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.99 Score=43.44 Aligned_cols=106 Identities=17% Similarity=0.032 Sum_probs=73.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC----C---CCCCCCccEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED----L---PFPTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~----~---~~~~~~fD~i 179 (337)
.+..+|-||-|.|.+...+...+|..++++++++|++++.|++.... .+..+...|..+ . .-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 56789999999999999999888989999999999999999976432 122233333211 0 1245579988
Q ss_pred Eec----ccccccCC--H----HHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 180 VSA----GSIEYWPD--P----QRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 180 ~~~----~~l~~~~~--~----~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
... . .|-+.- + +.++..+...|.|.|.+++.-....
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 862 2 222222 1 3689999999999999987654443
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=2.6 Score=39.29 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=62.8
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-eEEEEc-CCCC-C-CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEG-DAED-L-PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~-d~~~-~-~~~~~~fD~i~~~ 182 (337)
.++++||=.|+ |.|..+..+++.. +.+|++++.+++..+.+++...... +..... +..+ + ....+.+|+|+-.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 47899999997 4788888888885 6789999999988888763322111 111101 1110 0 0112358888743
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. ...+..+.+.|++||++++...
T Consensus 236 vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 236 VG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC-------HHHHHHHHHHhccCCEEEEECc
Confidence 21 1467888999999999987653
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=87.95 E-value=2.5 Score=39.18 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C-CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~i~~ 181 (337)
+++.+||-.|+| .|..+..+++..+...++++|.+++..+.+++... . .++..+-.+. . .....+|+|+.
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~-~--~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA-T--DIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--eEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 478899988876 46677777777643469999999988888876422 1 1111110110 0 12245898884
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... . ...+.++.+.|+++|+++....
T Consensus 242 ~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 242 AGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 221 1 2467889999999999987643
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.89 E-value=7.3 Score=37.02 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc---CCCC-CC--CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG---DAED-LP--FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~---d~~~-~~--~~~~~fD~i~~ 181 (337)
.++++||=.|+| .|..+..+++..+...++.+|.++.-++.+++... . .+... +..+ +. .....+|+++-
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga--~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC--E-TVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC--e-EEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 367888888886 36666777777543346677899888988887532 1 12111 1100 10 12235898885
Q ss_pred cccccc--------cCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEY--------WPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...-.. ..+....+++..+.+++||++++...
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 433210 01223588999999999999998764
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.76 Score=43.42 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=53.3
Q ss_pred HHHHHHHhhCCCCCeEEEEcCCCCCC--CCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 145 HQLAKAKQKEPLKECKIVEGDAEDLP--FPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~d~~~~~--~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+..+..++++ .+++++.+++.+.- .+++++|.++......++++. .+.++++.+.++|||++++-....+
T Consensus 265 e~f~~lr~~~--drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 265 ENFEALRARL--DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred hHHHHHhcCC--CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 3444444444 67899999886532 457899999999999988764 4789999999999999998765443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.80 E-value=2.8 Score=38.65 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-C--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~--~~~~~~fD~i~~~~~ 184 (337)
+++.+||..|+| .|..+..+++..+...+++++.++...+.+++.....-+.....+..+ + ....+.+|+++....
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g 245 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVG 245 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccC
Confidence 367899988876 477777788876324788998888877777654311001111111100 0 012346998885321
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
- ...+.+..+.|+++|+++...
T Consensus 246 ~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 246 F------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C------HHHHHHHHHHhhcCCEEEEEc
Confidence 1 247788899999999988654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=87.70 E-value=2.6 Score=38.46 Aligned_cols=93 Identities=18% Similarity=0.072 Sum_probs=62.0
Q ss_pred CCCCEEEEEc--CcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCccEEEe
Q 019684 109 NRNMLVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~i~~ 181 (337)
.++.+||=.| .|.|..+..+++.. +.++++++.+++..+.+++... . .++..+-.+. ....+.+|+|+-
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga-~--~vi~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGF-D--AVFNYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-C--EEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence 4788998887 45788888888885 6799999999998888876422 1 1111111111 011245898874
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. .. ..+....+.|+++|+++...
T Consensus 218 ~~-----g~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 NV-----GG--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CC-----CH--HHHHHHHHhhccCCEEEEEc
Confidence 32 11 46788899999999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=0.53 Score=42.70 Aligned_cols=55 Identities=27% Similarity=0.340 Sum_probs=37.2
Q ss_pred CeEEEEcCCCCC--CCCCCCccEEEeccccc-------c---c------CCHHHHHHHHHHhccCCCEEEEEc
Q 019684 158 ECKIVEGDAEDL--PFPTDYADRYVSAGSIE-------Y---W------PDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 158 ~~~~~~~d~~~~--~~~~~~fD~i~~~~~l~-------~---~------~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+..++++|+.+. .+++++||+|++.=-.. . + .-....+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 446788888553 35677899999832110 0 0 001368999999999999999863
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=87.65 E-value=2.9 Score=38.32 Aligned_cols=95 Identities=18% Similarity=0.036 Sum_probs=61.7
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-eEEEEc-CCCC-C-CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEG-DAED-L-PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~-d~~~-~-~~~~~~fD~i~~~ 182 (337)
.++.+||=.|. |.|..+..+++.. +.++++++.+++..+.+++... .. +..... +..+ . ....+.+|+|+-.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lGa-~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLGF-DVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-CEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 47889998884 5788888888875 6799999999998888876432 11 111110 1111 0 0112358888742
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. .. ..+....+.|+++|+++...
T Consensus 215 ~-----G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 215 V-----GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred C-----CH--HHHHHHHHHhCcCcEEEEec
Confidence 2 21 24578899999999999764
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=87.59 E-value=6 Score=37.88 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=64.0
Q ss_pred HHhccccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCcc
Q 019684 99 DDALEPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYAD 177 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 177 (337)
+.+++.....-++++|+=+|+|. |......++.. +++|+.+|.++...+.|++. +.+.. +.++. . ..+|
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----G~~~~--~~~e~-v--~~aD 259 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----GYEVM--TMEEA-V--KEGD 259 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----CCEEc--cHHHH-H--cCCC
Confidence 44444444434789999999996 55555555554 67999999999888887753 22222 11111 1 2479
Q ss_pred EEEecccccccCCHHHHHHH-HHHhccCCCEEEEEcC
Q 019684 178 RYVSAGSIEYWPDPQRGIRE-AYRVLKLGGKACIIGP 213 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~-~~~~LkpgG~l~i~~~ 213 (337)
+|+... ... .++.. ..+.+|+||.++....
T Consensus 260 VVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 260 IFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred EEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 998642 222 34554 5899999999988764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=87.14 E-value=0.72 Score=43.12 Aligned_cols=121 Identities=13% Similarity=0.065 Sum_probs=80.6
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHh----------hCCC--CCeEE
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ----------KEPL--KECKI 161 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~----------~~~~--~~~~~ 161 (337)
.......+.+.+.+. +++.-.|+|+|.|.....++.......-+|+++....-+.+.. .+.. ..+..
T Consensus 177 ~~~ql~si~dEl~~g-~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLG-PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hHHHHHHHHHHhccC-CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 344455556666664 7888999999999999988887555667788776543333332 1221 23677
Q ss_pred EEcCCCCCC---CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 162 VEGDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 162 ~~~d~~~~~---~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+++++.+.. .-....++|+++++.. -++...-+.++..-+++|-+++=..+..+
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vNN~~F-dp~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVNNVAF-DPELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEecccC-CHHHHHhhHHHHhhCCCcceEeccccccc
Confidence 888876532 2234588999888775 33334455699999999999987666544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.99 E-value=2.3 Score=39.94 Aligned_cols=103 Identities=21% Similarity=0.134 Sum_probs=72.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCCCC--------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAEDLP-------------- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~-------------- 170 (337)
.+.++||.+|+.+.....+++.++..+--|+++..+.+..+...... .++.+..+|+...+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 46799999999999999999998777788899988888877754332 22344444432221
Q ss_pred ---------------CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 171 ---------------FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 171 ---------------~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
++...+|. ..+.-|+++...++......++|+|.+.+.+...
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~ 316 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIR 316 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcC
Confidence 12223333 4455566666778899999999999999876544
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=86.66 E-value=1.4 Score=39.31 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=41.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-----CCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP 170 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~ 170 (337)
.++..++|.|||.|.++..++... +...++.||-...-...-...-.. ..+.=+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 467899999999999999999887 457899999865433222221111 23455566766543
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.52 E-value=6.4 Score=36.74 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=57.7
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE-cCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+||-.|+| .|..+..+++.. +.+++.++.+++....+.+..... .++. .+...+......+|+++-..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~--~~i~~~~~~~~~~~~~~~D~vid~~--- 252 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGAD--DYLVSSDAAEMQEAADSLDYIIDTV--- 252 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCc--EEecCCChHHHHHhcCCCcEEEECC---
Confidence 467888888875 466777777775 678888888877665554433211 1111 11011100112478777432
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ....+..+.+.|++||+++....
T Consensus 253 --g-~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 253 --P-VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --C-chHHHHHHHHHhccCCEEEEECC
Confidence 1 12467778899999999988754
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.65 E-value=4.7 Score=37.81 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE--cCCCC-C-CCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE--GDAED-L-PFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~--~d~~~-~-~~~~~~fD~i~~~~ 183 (337)
+++++||=.|+|. |..+..+++..+..+|+++|.+++.++.+++.....-+.... .+..+ + ....+.+|+|+-..
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 263 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 4789999999864 667777777753337999999999999997653211011110 00000 0 01122588887432
Q ss_pred cccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
. . ...+.+..+.+++| |++++...
T Consensus 264 G-----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 264 G-----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred C-----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 1 1 34677788899886 99887654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.2 Score=34.89 Aligned_cols=88 Identities=23% Similarity=0.180 Sum_probs=45.6
Q ss_pred CCCEEEEEcCccc-HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~ 187 (337)
+..+|+|||-|.= ..+..|++. +..|+++|+.+. .++ .++.++..|+.+.... -...|+|++...-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiRPP-- 80 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIRPP-- 80 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------STTEE---SSS--HHHHTTEEEEEEES----
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc-----cCcceeeecccCCCHHHhcCCcEEEEeCCC--
Confidence 3459999999964 455566666 799999999887 222 4678999999773321 1348999975432
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++.+..+-++.+.+ |.-+++..
T Consensus 81 -~El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 81 -PELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp -TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred -hHHhHHHHHHHHHh--CCCEEEEC
Confidence 34444444444433 45555543
|
; PDB: 2K4M_A. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.48 E-value=5.1 Score=36.97 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-------C--CCCCCCcc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAED-------L--PFPTDYAD 177 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-------~--~~~~~~fD 177 (337)
.++.+||-.|+|. |..+..+++.. +.+ ++.++.+++..+.+++... . .++..+-.+ + ......+|
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKELGA-T--HTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCC-c--EEeccccccchhHHHHHHHHhCCCCCC
Confidence 4788888888765 77777788875 555 8999988888887765321 1 111111111 0 12234599
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+|+....- ...+.+..+.|+++|+++...
T Consensus 237 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 237 VVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 99854221 236788899999999998764
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.18 E-value=4.5 Score=37.87 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC--C-CCC-CCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD--A-EDL-PFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d--~-~~~-~~~~~~fD~i~~~~ 183 (337)
.++.+||=.|+| .|..+..+++..+..+|+++|.++...+.+++.....-+.....+ . +.+ ....+.+|+|+-..
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~ 262 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence 478899988886 366666777776333799999999999888754321101111100 0 000 01123589888432
Q ss_pred cccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
.. ...+.+..+.|+++ |++++...
T Consensus 263 -----g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 263 -----GN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred -----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 11 24677888899886 99987654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=84.92 E-value=4.6 Score=37.18 Aligned_cols=94 Identities=23% Similarity=0.340 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcC---CCCC-C-CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGD---AEDL-P-FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d---~~~~-~-~~~~~fD~i~~ 181 (337)
.++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++... . .++..+ ..++ . .....+|+++.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGA-D--DTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-C--EEecCccccHHHHHHHhCCCCCCEEEE
Confidence 4778999998765 77777777775 565 9999998888887754321 1 111111 0000 1 12234899985
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. .....+..+.+.|+++|.++...
T Consensus 234 ~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 41 12346788899999999988765
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=84.86 E-value=4.7 Score=31.04 Aligned_cols=85 Identities=21% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCEEEEEcCcccH-HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEeccccccc
Q 019684 111 NMLVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYW 188 (337)
Q Consensus 111 ~~~VLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~~ 188 (337)
.++|.|||-|-=. .+..|++. ++.++++|+++. ++. .+++++..|+.+.... -...|+|+| +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-~g~~~v~DDitnP~~~iY~~A~lIYS------i 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-EGLRFVVDDITNPNISIYEGADLIYS------I 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-ccceEEEccCCCccHHHhhCccceee------c
Confidence 3589999998643 44555555 799999999776 222 5789999999874321 134788885 3
Q ss_pred CCHHHHHHHHHHhccC-CCEEEEE
Q 019684 189 PDPQRGIREAYRVLKL-GGKACII 211 (337)
Q Consensus 189 ~~~~~~l~~~~~~Lkp-gG~l~i~ 211 (337)
.-+.++.+.+.++-+. |..+++.
T Consensus 78 RpppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 78 RPPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred CCCHHHHHHHHHHHHhhCCCEEEE
Confidence 3344444444444433 3344443
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.75 E-value=28 Score=31.80 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=81.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCC------------------------CeEEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLK------------------------ECKIVE 163 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~------------------------~~~~~~ 163 (337)
....|+.+|||.-.....+...+ ....++=||.++..-..+......+ +-..+-
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeec
Confidence 55789999999988887777765 4577888898777666662211111 011222
Q ss_pred cCCCCCC----------CCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh----
Q 019684 164 GDAEDLP----------FPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV---- 227 (337)
Q Consensus 164 ~d~~~~~----------~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~---- 227 (337)
.|+.++. ...+-.-++++-.++.+++.. ...++.+.......+.+ +.+...+...+...+...
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv-~YEQi~~~D~Fg~vM~~nlk~r 245 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFV-NYEQINPNDRFGKVMLANLKRR 245 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEE-EEeccCCCChHHHHHHHHHHhc
Confidence 2332211 001112234444555555432 24566666655544444 444333332222222111
Q ss_pred ------hccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 228 ------WMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 228 ------~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
...+.+.+..++-+.++||+.+.+.++..-
T Consensus 246 ~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei 281 (335)
T KOG2918|consen 246 GCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEI 281 (335)
T ss_pred CCCCchhhhcccHHHHHHHHHhcCCceeehhhHHHH
Confidence 123578999999999999999999887643
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=84.69 E-value=5.8 Score=36.57 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=62.7
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-eEEEEc-CCCC-C-CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEG-DAED-L-PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~-d~~~-~-~~~~~~fD~i~~~ 182 (337)
.++++||=.|+ |.|..+..+++.. +.++++++.+++..+.+++...... +..... |..+ + ....+.+|+|+-.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 47899999886 5788888888875 6789999999988888876332121 111111 1110 0 0112458888743
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. . ...+.+..+.|+++|+++...
T Consensus 229 ~-----g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 V-----G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred C-----C--HHHHHHHHHHhccCcEEEEec
Confidence 2 1 246788899999999998764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.56 E-value=3.6 Score=41.55 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=62.1
Q ss_pred CEEEEEcCcccHHHHHHHhhC----CCCeEEEEeCCHHHHHHHHhh------CC------CCCeEEEEcCCCCCCCCC--
Q 019684 112 MLVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQK------EP------LKECKIVEGDAEDLPFPT-- 173 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~------~~------~~~~~~~~~d~~~~~~~~-- 173 (337)
..|+-+|+|-|-+.....+.. -..++++||-++........+ .. ...++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 358999999998776554432 136899999996643333222 11 123899999998764321
Q ss_pred ---------CCccEEEecccccccCCH---HHHHHHHHHhccC----CCE
Q 019684 174 ---------DYADRYVSAGSIEYWPDP---QRGIREAYRVLKL----GGK 207 (337)
Q Consensus 174 ---------~~fD~i~~~~~l~~~~~~---~~~l~~~~~~Lkp----gG~ 207 (337)
+++|+||+- .|..+.|- .+-|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999973 34444332 3678888888887 776
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.56 E-value=10 Score=34.45 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.++.+||=.|+| .|..+..+++.. +.++++++.+++..+.+++... . ... +..+. ...+.+|+++-..
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~---~~~-~~~~~-~~~~~~d~vid~~---- 222 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRLGV-E---TVL-PDEAE-SEGGGFDVVVEAT---- 222 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCC-c---EEe-Ccccc-ccCCCCCEEEECC----
Confidence 367899988865 355555556664 6789999999999988886321 1 111 11111 2334699988532
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. ....+..+.+.|+++|.++...
T Consensus 223 -g-~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 -G-SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -C-ChHHHHHHHHHhhcCCEEEEEc
Confidence 1 1346778888999999998743
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.55 E-value=4.9 Score=37.67 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEc--CCCC-C-CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEG--DAED-L-PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--d~~~-~-~~~~~~fD~i~~~ 182 (337)
+++.+||=.|+| .|..+..+++.. +. +|+++|.+++.++.+++.....-+..... +..+ + ...++.+|+|+-.
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 263 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC 263 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence 478999999876 366666777775 55 79999999999998875432110111110 0100 0 0112358988753
Q ss_pred ccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
.. . ...+.+..+.|+++ |++++...
T Consensus 264 ~g-----~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 264 IG-----N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CC-----C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 21 1 24677888999997 99987754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.70 E-value=5.8 Score=37.45 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHH-HHHHHhhCCCCCeEEEEc--CCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQ-LAKAKQKEPLKECKIVEG--DAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~~~--d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+||-.|+| .|..+..+++.. +.+++++|.+++. .+.+++.. .+.... +...+.-..+.+|+|+-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~lG----a~~~i~~~~~~~v~~~~~~~D~vid~~- 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRLG----ADSFLVTTDSQKMKEAVGTMDFIIDTV- 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhCC----CcEEEcCcCHHHHHHhhCCCcEEEECC-
Confidence 368899988886 466777777775 6789999887654 45554332 111111 1001000012478887432
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ....+.+..+.+++||.++....
T Consensus 251 ----G-~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 ----S-AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ----C-cHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 22467788899999999987753
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=83.57 E-value=5.5 Score=38.71 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=62.3
Q ss_pred HHHhccccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCc
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 176 (337)
.+.+++.....-.+++|+=+|+|. |......++.+ +.+|+++|.++.....+... +..+. ++++. . ...
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----G~~vv--~leEa-l--~~A 310 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME----GYQVL--TLEDV-V--SEA 310 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----CCeec--cHHHH-H--hhC
Confidence 344444444434689999999995 44444444444 67999999988654444432 22221 22221 1 247
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+|+.... +..-+..+....+|+||.|+.....
T Consensus 311 DVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 311 DIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CEEEECCC-----CccchHHHHHhcCCCCCEEEEcCCC
Confidence 99986322 2222447788999999999987653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.37 E-value=13 Score=32.73 Aligned_cols=73 Identities=16% Similarity=0.076 Sum_probs=47.1
Q ss_pred CEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CC------CCCcc
Q 019684 112 MLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP------TDYAD 177 (337)
Q Consensus 112 ~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~------~~~fD 177 (337)
++||-.|++.|. ++..+++. +.+|+.++.++..++...+.....++.++.+|+.+.. +. .++.|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE--GWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 457778765432 33334444 7899999998887776655443356888899996532 11 34689
Q ss_pred EEEeccccc
Q 019684 178 RYVSAGSIE 186 (337)
Q Consensus 178 ~i~~~~~l~ 186 (337)
+++.+....
T Consensus 80 ~vi~~ag~~ 88 (260)
T PRK08267 80 VLFNNAGIL 88 (260)
T ss_pred EEEECCCCC
Confidence 988765543
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.24 E-value=5.7 Score=36.81 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC-CC-C-CCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-DL-P-FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~-~-~~~~~fD~i~~~~ 183 (337)
.++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++.....-+.....+.. .+ . ...+.+|+|+-..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECC
Confidence 367888888875 356666677775 55 89999999998888865422100010111110 00 0 1223489988532
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ....++++.+.|+++|+++....
T Consensus 250 g------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 250 G------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred C------CHHHHHHHHHhccCCCEEEEEcc
Confidence 2 12467888999999999987654
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=7.5 Score=35.68 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~i~~~~~l 185 (337)
.++.+||=.|+|. |..+..+++. .+...++++|.+++..+.+++.....-+.....+. +.+.-....+|+|+...
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~-- 236 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAA-- 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECC--
Confidence 4788999999753 5555556664 33345888999998888887643211011111111 11110111245665322
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. ...+.+..+.|+++|+++....
T Consensus 237 ---g~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 237 ---CH-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ---CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 11 2467888999999999988754
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=82.89 E-value=18 Score=34.40 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=60.2
Q ss_pred CCCCEEEEEc-Cc-ccHHHHHHHhhCC--CCeEEEEeCCHHHHHHHHhhCCCC----CeEEEEcCCC---CC-----C-C
Q 019684 109 NRNMLVVDVG-GG-TGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLK----ECKIVEGDAE---DL-----P-F 171 (337)
Q Consensus 109 ~~~~~VLDiG-cG-~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~d~~---~~-----~-~ 171 (337)
+++.+||=+| +| .|..+..+++..+ ..+|+++|.+++.++.+++..... +......|.. ++ . .
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 4678999887 34 6888888887742 247999999999999998752110 2221111211 11 0 1
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
....+|+|+.... . ...+....+.++++|.+++.
T Consensus 254 ~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 2235888875321 1 35778889999988876554
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.80 E-value=10 Score=34.77 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE-cCCCCCC-------CCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLP-------FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~d~~~~~-------~~~~~fD~i 179 (337)
++|.+|.-+|+|. |.....-++..+..+++|+|++++-.+.|++.... +|+. .|..+ | ..++.+|.-
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT---e~iNp~d~~~-~i~evi~EmTdgGvDys 266 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT---EFINPKDLKK-PIQEVIIEMTDGGVDYS 266 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc---eecChhhccc-cHHHHHHHHhcCCceEE
Confidence 4778888888886 44444445555668999999999999999976432 2222 13333 2 234556654
Q ss_pred EecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
+ +.+-+ .++++++....+.| |.-++...
T Consensus 267 f-----Ec~G~-~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 267 F-----ECIGN-VSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred E-----EecCC-HHHHHHHHHHhhcCCCeEEEEEe
Confidence 4 22222 35778888888888 88777643
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.74 E-value=14 Score=34.18 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=76.1
Q ss_pred CCEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------C---------CCeEEEEcCCCCCCCC
Q 019684 111 NMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------L---------KECKIVEGDAEDLPFP 172 (337)
Q Consensus 111 ~~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~---------~~~~~~~~d~~~~~~~ 172 (337)
-.+|-=||+|+ ..++..++.. |.+|+..|.+++.++.+++... . .++++. .|+++ .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---C 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---H
Confidence 35788999984 4555566665 8999999999988776654211 0 111111 11111 0
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh------------hhhhhc-c--------C
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY------------FADVWM-L--------F 231 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------------~~~~~~-~--------~ 231 (337)
-...|+|+-. +.+...-...+++++.+.++|+..|.-.+.......+... ++..+. . .
T Consensus 81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~ 159 (321)
T PRK07066 81 VADADFIQES-APEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGER 159 (321)
T ss_pred hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCC
Confidence 1236777643 3333333457899999999998744433332221111111 111110 0 0
Q ss_pred C---CHHHHHHHHHhCCCcEEEEE-EcC
Q 019684 232 P---KEEEYIEWFQKAGFKDVQLK-RIG 255 (337)
Q Consensus 232 ~---~~~~~~~~l~~aGF~~v~~~-~~~ 255 (337)
. +.+...+++++.|.+.|.+. +..
T Consensus 160 T~~e~~~~~~~f~~~lGk~pV~v~kd~p 187 (321)
T PRK07066 160 TAPEAVDAAMGIYRALGMRPLHVRKEVP 187 (321)
T ss_pred CCHHHHHHHHHHHHHcCCEeEecCCCCc
Confidence 1 23556788999999988884 443
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.72 E-value=7.8 Score=35.87 Aligned_cols=103 Identities=23% Similarity=0.294 Sum_probs=67.1
Q ss_pred ccccCCCCCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc----CCCC--CCCCCC
Q 019684 102 LEPADLSNRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG----DAED--LPFPTD 174 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~----d~~~--~~~~~~ 174 (337)
++.... +++.+|.-+||| -|..++.-+......+++++|+++.-++.|++...- .++.. |+-+ ....++
T Consensus 178 ~nta~v-~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT---~~vn~~~~~~vv~~i~~~T~g 253 (366)
T COG1062 178 VNTAKV-EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT---HFVNPKEVDDVVEAIVELTDG 253 (366)
T ss_pred hhcccC-CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc---eeecchhhhhHHHHHHHhcCC
Confidence 333444 488999999997 466667767776678999999999999999976432 22221 1210 012233
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
..|.++ +..-+. ..+++....+.++|..+++...
T Consensus 254 G~d~~~-----e~~G~~-~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 254 GADYAF-----ECVGNV-EVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCCEEE-----EccCCH-HHHHHHHHHHhcCCeEEEEecC
Confidence 466553 222233 3788888888889999887543
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=82.56 E-value=2.8 Score=38.61 Aligned_cols=123 Identities=15% Similarity=0.038 Sum_probs=73.5
Q ss_pred EEEEcCcccHHHHHHHhhCCCCeEE-EEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEecccccc----
Q 019684 114 VVDVGGGTGFTTLGIVKHVDAKNVT-ILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY---- 187 (337)
Q Consensus 114 VLDiGcG~G~~~~~l~~~~~~~~v~-gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~---- 187 (337)
|+|+-||.|.+..-+.+. +.+++ ++|+++...+.-+.+... .+..+|+.++... -..+|+++...--..
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~---~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~a 75 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN---KVPFGDITKISPSDIPDFDILLGGFPCQPFSIA 75 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC---CCCccChhhhhhhhCCCcCEEEecCCCcccchh
Confidence 689999999999988876 67755 699999999998887643 4456787665421 124899887322111
Q ss_pred -----cCCHH-HHHHHHHHh---ccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 188 -----WPDPQ-RGIREAYRV---LKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 188 -----~~~~~-~~l~~~~~~---LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..|.. .++.++.++ ++|. +++.+....-.... .-.....+.+.|++.||.+...
T Consensus 76 g~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~--------~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 76 GKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHD--------KGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred cccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcc--------cchHHHHHHHHHHhCCCEEEEE
Confidence 12332 344444444 4663 44444332111000 0112466778899999976443
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=82.55 E-value=17 Score=33.41 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=59.7
Q ss_pred CCEEEEEcC--cccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCccEEEec
Q 019684 111 NMLVVDVGG--GTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (337)
Q Consensus 111 ~~~VLDiGc--G~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~i~~~ 182 (337)
+++||=.|+ |.|..+..+++.. +. +|++++.+++..+.+++...... ++..+-.++ ...++.+|+|+-.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~--vi~~~~~~~~~~i~~~~~~gvd~vid~ 231 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDA--AINYKTDNVAERLRELCPEGVDVYFDN 231 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcE--EEECCCCCHHHHHHHHCCCCceEEEEC
Confidence 389998885 5788888888886 56 89999999988888776332211 121111111 0112458988743
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. .. ..+.+..+.|+++|+++...
T Consensus 232 ~-----g~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 232 V-----GG--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred C-----Cc--HHHHHHHHHhccCCEEEEEe
Confidence 2 12 23577889999999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.42 E-value=22 Score=30.60 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhC-CCCCeEEEEcCCCCCC-C---------CCCCc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLP-F---------PTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~-~---------~~~~f 176 (337)
++++||-.|++. ..+..+++.+ .+.+|++++-+++..+...+.. ...++.++.+|+.+.. . .-+..
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 467899999864 3333333322 3789999999887665553322 1235788888986532 0 01346
Q ss_pred cEEEecccccccC---C--------------HHHHHHHHHHhccCCCEEEEEcC
Q 019684 177 DRYVSAGSIEYWP---D--------------PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~~---~--------------~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|.++......... + ...+++.+...++++|.+++...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 8777654322111 1 11345666667778888877654
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=82.39 E-value=23 Score=32.85 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC--------C-CCCCCcc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--------P-FPTDYAD 177 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~--------~-~~~~~fD 177 (337)
.++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++... . .++..+-... . .....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREFGA-D--ATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC-C--eEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 367888888875 356666677775 56 89999999888877764321 1 1111110000 0 1124589
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|+-... ....+....+.|+++|+++....
T Consensus 252 ~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 252 VVIEASG------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EEEECCC------ChHHHHHHHHHhccCCEEEEEcC
Confidence 8884321 12467788899999999987753
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=82.28 E-value=15 Score=37.96 Aligned_cols=136 Identities=12% Similarity=0.028 Sum_probs=82.2
Q ss_pred CEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--------C------------CCeEEEEcCCCCC
Q 019684 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECKIVEGDAEDL 169 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--------~------------~~~~~~~~d~~~~ 169 (337)
.+|.-||+|+ ..++..++.. +.+|+.+|.+++.++.+.++.. . .++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 5799999997 3445555555 8999999999999887664321 0 122222 233221
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhh------------hhhhc--------
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF------------ADVWM-------- 229 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------------~~~~~-------- 229 (337)
...|+|+=. +.+.+.-.+++++++.++++|+..|.-.+...+...+.... ...+.
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~ 465 (715)
T PRK11730 391 ----ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (715)
T ss_pred ----cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeC
Confidence 347777733 44444445689999999999997776554443322221111 11100
Q ss_pred cC----CCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 230 LF----PKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 230 ~~----~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.. .+.+...++++..|.+.+.+.+..
T Consensus 466 g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p 495 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMGKTPIVVNDCP 495 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcC
Confidence 00 123566788999999999886554
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=81.87 E-value=20 Score=37.02 Aligned_cols=138 Identities=17% Similarity=0.013 Sum_probs=82.0
Q ss_pred CCEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------------------CCeEEEEcCCCC
Q 019684 111 NMLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECKIVEGDAED 168 (337)
Q Consensus 111 ~~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------~~~~~~~~d~~~ 168 (337)
-.+|.-||+|+ ..++..++.. .+.+|+.+|.+++.++.+.++... .++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 36799999997 3455555523 389999999999988887543210 122222 22221
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhh------------hhhc-------
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA------------DVWM------- 229 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~------------~~~~------- 229 (337)
. ...|+|+=. +.+.+.-.+++++++.++++|+..|.-.+...+...+..... ..+.
T Consensus 387 --~--~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv 461 (708)
T PRK11154 387 --F--KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVI 461 (708)
T ss_pred --h--ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEE
Confidence 1 347877743 444444456899999999999988865544433222211111 1110
Q ss_pred -c-CC---CHHHHHHHHHhCCCcEEEEEEcC
Q 019684 230 -L-FP---KEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 230 -~-~~---~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. .. +.+...+++++.|...+.+.+..
T Consensus 462 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p 492 (708)
T PRK11154 462 PHAKTSAETIATTVALAKKQGKTPIVVRDGA 492 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEEeccC
Confidence 0 01 24566778899999988886543
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.72 E-value=3 Score=33.75 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=24.6
Q ss_pred EEcCccc--HHHHHHH--hhCCCCeEEEEeCCHHHHHHHHhh
Q 019684 116 DVGGGTG--FTTLGIV--KHVDAKNVTILDQSPHQLAKAKQK 153 (337)
Q Consensus 116 DiGcG~G--~~~~~l~--~~~~~~~v~gvD~s~~~~~~a~~~ 153 (337)
|||++.| .....+. ...+..+|+++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 344678999999999998887776
|
; PDB: 2PY6_A. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.38 E-value=18 Score=31.85 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CC-----CCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP-----TDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~-----~~~f 176 (337)
.++++|-.|++.|. .+..+++. +.+|+.+|.+++.++...+... .++.++.+|+.+.. +. -+..
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASLG-ERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC-CeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45788888865442 33334444 7899999998776555444332 45778888986532 11 1357
Q ss_pred cEEEeccccccc----CCH---H-----------HHHHHHHHhc-cCCCEEEEEcC
Q 019684 177 DRYVSAGSIEYW----PDP---Q-----------RGIREAYRVL-KLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~----~~~---~-----------~~l~~~~~~L-kpgG~l~i~~~ 213 (337)
|+++.+...... .+. . .+.+.+...+ +++|.++++..
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS 137 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTS 137 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 888876443211 111 1 2344445555 66788877643
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=81.30 E-value=8.6 Score=35.32 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHH-HHHHhhCCCCCeEEEEc-CCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~-d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|+-+|+|. |..+..........+|+.+|.+++.. +.+.+. .. ..... |..+. -...|+|++...-.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g~---~~~~~~~~~~~---l~~aDvVi~at~~~ 249 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GG---NAVPLDELLEL---LNEADVVISATGAP 249 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-CC---eEEeHHHHHHH---HhcCCEEEECCCCC
Confidence 578999999974 44333333332346899999998754 444432 21 22221 21111 13489999876554
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+. ...+..+......++.++ .+..
T Consensus 250 ~~---~~~~~~~~~~~~~~~~~v-iDla 273 (311)
T cd05213 250 HY---AKIVERAMKKRSGKPRLI-VDLA 273 (311)
T ss_pred ch---HHHHHHHHhhCCCCCeEE-EEeC
Confidence 43 333444433332234544 4443
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=81.13 E-value=9.5 Score=35.14 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC---CCCCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDA---EDLPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD~i~~~~ 183 (337)
.++.+||-.|+|. |..+..+++.. +. ++++++-+++-.+.+++.....-+.....+. .++ ...+.+|+|+...
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld~~ 239 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSV-TDGTGVDVVLEMS 239 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHH-cCCCCCCEEEECC
Confidence 3678888888764 66777777775 45 7888888887777766532210000001111 011 1234589888532
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ......++.+.|+++|.++....
T Consensus 240 g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 240 G------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred C------CHHHHHHHHHHhccCCEEEEEcc
Confidence 1 12457788899999999987643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.13 E-value=9.6 Score=35.64 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-C----CCC-C-CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-D----AED-L-PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d----~~~-~-~~~~~~fD~i~ 180 (337)
.++.+||=.|+| .|..+..+++..+..+|+++|.+++..+.+++... . .++.. + ..+ + ....+.+|+++
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV-T--EFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c--eEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 478999999876 36666777777533389999999999998876432 1 11111 1 000 0 01123588877
Q ss_pred ecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
-.. . ....+....+.+++| |++++...
T Consensus 263 d~~-----G-~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 263 ECT-----G-NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred ECC-----C-ChHHHHHHHHHhhcCCCEEEEECc
Confidence 431 1 134677788899996 99988754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=80.95 E-value=3.6 Score=37.26 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=42.2
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
.+.||+|+..+...|.-.+. +.++++|+|.|++...-.-...-...... -.+.+.++++++||+.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~------F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQE------FVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHH------HHHHHHHHHHHCCCcccc
Confidence 35699999876665554443 77889999999987642110000000000 146788999999998653
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=80.94 E-value=8 Score=34.29 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCCEEEEEcCcccHHHHHHHh---hC--CCCeEEEEeCCH--------------------------HHHHHHHhhCCC--
Q 019684 110 RNMLVVDVGGGTGFTTLGIVK---HV--DAKNVTILDQSP--------------------------HQLAKAKQKEPL-- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~---~~--~~~~v~gvD~s~--------------------------~~~~~a~~~~~~-- 156 (337)
-...|+|.||-.|..+..++. .+ ++-+++++|.=+ ..++..+++...
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 357899999999987765433 22 345688877432 134445555432
Q ss_pred ---CCeEEEEcCCC-CCC-CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 157 ---KECKIVEGDAE-DLP-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 157 ---~~~~~~~~d~~-~~~-~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
.++.++.+.+. .+| .+.+++-++..-.-+ ...-...|+.++..|.|||.+++-+...
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 46899999984 344 222333333322111 1112478999999999999999987665
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=80.86 E-value=2.2 Score=39.10 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=76.7
Q ss_pred EEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---CCCCCccEEEeccccc--
Q 019684 113 LVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSIE-- 186 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~~l~-- 186 (337)
+++|+-||.|.+..-+.+. +. .+.++|+++.+.+.-+.|.. ....+|+.++. ++. .+|+++...--.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT----EEEESHGGGCHHHHHHH-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc----ccccccccccccccccc-cceEEEeccCCceE
Confidence 6899999999999998887 54 56789999999999988765 77888987764 333 499998732211
Q ss_pred -------ccCCHH----HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 -------YWPDPQ----RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 -------~~~~~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...|.. .-+-++.+.++|.- +++ |....-...... ...+.+.+.|++.|+.+ ....+.
T Consensus 75 S~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~-ENV~~l~~~~~~--------~~~~~i~~~l~~lGY~v-~~~vln 143 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLFFEFLRIVKELKPKY-FLL-ENVPGLLSSKNG--------EVFKEILEELEELGYNV-QWRVLN 143 (335)
T ss_dssp STTSTHHCCCCHTTSHHHHHHHHHHHHS-SE-EEE-EEEGGGGTGGGH--------HHHHHHHHHHHHTTEEE-EEEEEE
T ss_pred eccccccccccccchhhHHHHHHHhhccceE-EEe-cccceeeccccc--------cccccccccccccceee-hhcccc
Confidence 122332 22334445567733 333 322111100000 12467888999999975 444444
Q ss_pred cccc
Q 019684 256 PKWY 259 (337)
Q Consensus 256 ~~~~ 259 (337)
...|
T Consensus 144 a~~y 147 (335)
T PF00145_consen 144 AADY 147 (335)
T ss_dssp GGGG
T ss_pred HhhC
Confidence 3333
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=80.80 E-value=7.1 Score=35.87 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---CCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~~ 184 (337)
.++.+||=.||| .|..+..+++.. +.+++.++.+++..+.+++... . .++...-.+.. .....+|+++...
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~--~~i~~~~~~~~~~~~~~~~~d~vi~~~- 236 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKLGA-H--HYIDTSKEDVAEALQELGGAKLILATA- 236 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcCC-c--EEecCCCccHHHHHHhcCCCCEEEECC-
Confidence 367899999875 366666677775 6789999999888888865432 1 11111101110 0012478887421
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ....+..+.+.|+++|.++....
T Consensus 237 ----g-~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 237 ----P-NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ----C-chHHHHHHHHHcccCCEEEEEec
Confidence 1 13477888999999999987643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=80.79 E-value=26 Score=33.54 Aligned_cols=90 Identities=20% Similarity=0.222 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
-.+++|+=+|+|. |......++.. +.+|+++|.++.....+... +..+ .+.++. . ...|+|+...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~----G~~v--~~leea-l--~~aDVVItaT---- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD----GFRV--MTMEEA-A--KIGDIFITAT---- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc----CCEe--CCHHHH-H--hcCCEEEECC----
Confidence 3789999999996 55555555554 78999999988655444421 2222 122221 1 2479987632
Q ss_pred cCCHHHHHH-HHHHhccCCCEEEEEcCC
Q 019684 188 WPDPQRGIR-EAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 188 ~~~~~~~l~-~~~~~LkpgG~l~i~~~~ 214 (337)
.. ..++. +....+|+|++++.....
T Consensus 259 -G~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 -GN-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred -CC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 22 34444 588999999999887654
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.75 E-value=6.1 Score=35.43 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=73.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh---CCCCCeEEEEcCCCCCCCCC---CCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDAEDLPFPT---DYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~d~~~~~~~~---~~fD~i~~~~ 183 (337)
.|+.|+-+| -.-..++.++-..-..++..+|+++..+....+- ...+|++.+..|+.+ |+++ ..||+++..-
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiTDP 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeecCc
Confidence 578899999 3334444433332246899999999888766544 344668888889865 4333 5799887421
Q ss_pred cccccCCHHHHHHHHHHhccCC---CEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHH-HHHhCCCcEEEE
Q 019684 184 SIEYWPDPQRGIREAYRVLKLG---GKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIE-WFQKAGFKDVQL 251 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~ 251 (337)
-+.++....++.+=...||.- |++.++..... ..+ ..+++. +..+-||.+.++
T Consensus 230 -peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ress---idk-----------W~eiQr~lIn~~gvVITdi 286 (354)
T COG1568 230 -PETIKALKLFLGRGIATLKGEGCAGYFGITRRESS---IDK-----------WREIQRILINEMGVVITDI 286 (354)
T ss_pred -hhhHHHHHHHHhccHHHhcCCCccceEeeeecccc---HHH-----------HHHHHHHHHHhcCeeeHhh
Confidence 122223345566666667655 66766533221 111 123444 667778776555
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=80.51 E-value=11 Score=34.73 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCC--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~--~~~~~~fD~i~~~~~ 184 (337)
.++.+||=.|+| .|..+..+++..+..+++++|.++...+.+++.....-+.....+. ..+ ......+|+|+...
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~- 243 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAV- 243 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECC-
Confidence 367787777775 3555566677754378999999888877777542211011111111 000 01234589887432
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. ...+..+.+.|+++|.++...
T Consensus 244 ----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 244 ----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred ----CC-HHHHHHHHHhccCCcEEEEec
Confidence 22 335788889999999998764
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.13 E-value=6.3 Score=36.88 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~i~~~ 182 (337)
.++++||-.|+|. |..+..+++..+...++++|.++...+.+++... . .++..+-.+. ......+|+|+-.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-~--~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-T--HVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--EEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 3678999888764 6777777777643369999999988887775322 1 1111111110 0113458988853
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. . ...+.++.+.|+++|+++....
T Consensus 262 ~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 262 TG-----V-PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CC-----C-cHHHHHHHHHhccCCEEEEeCc
Confidence 21 1 2467888999999999987654
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=80.10 E-value=18 Score=36.63 Aligned_cols=91 Identities=19% Similarity=0.134 Sum_probs=58.0
Q ss_pred CEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~l 185 (337)
.+|+=+|+|. ++..+++.. .+.+++.+|.+++.++.+++ .+...+.+|..+.. ..-++.|.+++.
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~~A~~vv~~--- 471 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRK----YGYKVYYGDATQLELLRAAGAEKAEAIVIT--- 471 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CCCeEEEeeCCCHHHHHhcCCccCCEEEEE---
Confidence 5677777764 333333321 26799999999999998875 35678999997643 122457777753
Q ss_pred cccCCHH--HHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQ--RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~--~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+|.+ ..+-...|.+.|..+++....
T Consensus 472 --~~d~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 472 --CNEPEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred --eCCHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 33433 234445566778888876543
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.04 E-value=4.9 Score=36.85 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=59.4
Q ss_pred CCCEEEEEcC-cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc--CCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGG-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG--DAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGc-G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
+|++|-=+|- |-|.++..+++.. +.+|+++|-+..--+.+-+.+.... |+.. |-....-..+..|.++-.-.
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~--fv~~~~d~d~~~~~~~~~dg~~~~v~-- 255 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADV--FVDSTEDPDIMKAIMKTTDGGIDTVS-- 255 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcce--eEEecCCHHHHHHHHHhhcCcceeee--
Confidence 7888777765 4899999999986 7899999999866666665544332 2211 11001001123443332111
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.+ ....+..+.+.||++|.+++....
T Consensus 256 ~~--a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 256 NL--AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred ec--cccchHHHHHHhhcCCEEEEEeCc
Confidence 00 223567789999999999987543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 337 | ||||
| 3dlc_A | 219 | Crystal Structure Of A Putative S-Adenosyl-L-Methio | 6e-08 | ||
| 1vlm_A | 219 | Crystal Structure Of Sam-Dependent Methyltransferas | 5e-05 | ||
| 3l8d_A | 242 | Crystal Structure Of Methyltransferase From Bacillu | 5e-04 |
| >pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219 | Back alignment and structure |
|
| >pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase, Possible Histamine N-Methyltransferase (Tm1293) From Thermotoga Maritima At 2.20 A Resolution Length = 219 | Back alignment and structure |
|
| >pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 3e-37
Identities = 43/217 (19%), Positives = 83/217 (38%), Gaps = 24/217 (11%)
Query: 67 IQHKKEAFW--FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFT 124
+ K+ F + + + + P + + ++ + ++ +D+G G G
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIY--PIIAENIINRFGITAGT--CIDIGSGPGAL 57
Query: 125 TLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKE-CKIVEGDAEDLPFPTDYADRYV 180
++ + K D + LD S H A + L + +IV+GD ++P +YAD V
Sbjct: 58 SIALAKQSDFS-IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIV 116
Query: 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW------------ 228
S GS+ +W D RE YR+LK GGK I G A++
Sbjct: 117 SRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRK 176
Query: 229 -MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRR 264
+ E + + G ++ ++ + +
Sbjct: 177 NISQENVERFQNVLDEIGISSYEIILGDEGFWIIISK 213
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-35
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 13/160 (8%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDA 166
N V+DV G G V K V D + L A+ ++ + V+GDA
Sbjct: 37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA 94
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
E +PF + + ++P+P + EAYRVLK GG+ ++ P F +
Sbjct: 95 EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN 154
Query: 227 VWML--------FPKEEEYIEWFQKAGFKDVQLKRIGPKW 258
K+ ++++ ++AGF+ +L +
Sbjct: 155 YVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTF 194
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-35
Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 20/193 (10%)
Query: 68 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLG 127
H + + Y+ + A++ R V++G GTG +
Sbjct: 8 HHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGR---GVEIGVGTGRFAV- 63
Query: 128 IVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187
K ++ S A+++ +++G AE+LP + D + +I +
Sbjct: 64 -----PLKIKIGVEPSERMAEIARKRG----VFVLKGTAENLPLKDESFDFALMVTTICF 114
Query: 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW-------MLFPKEEEYIEW 240
DP+R ++EAYR+LK GG + +F Y + F EE ++
Sbjct: 115 VDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDL 174
Query: 241 FQKAGFKDVQLKR 253
+KAGF++ ++ +
Sbjct: 175 MRKAGFEEFKVVQ 187
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 5e-34
Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 7/205 (3%)
Query: 68 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLG 127
+ A + + ++ + + V+DVG G G+ T
Sbjct: 11 NWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYK 70
Query: 128 IVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187
+ + +D S + K K++ + ++GD LPF + + ++ S+E+
Sbjct: 71 LSRTG--YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128
Query: 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTF-----WLSRYFADVWMLFPKEEEYIEWFQ 242
+P R + E RVLK G ACI + Y DV E+ + +
Sbjct: 129 TEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVK 188
Query: 243 KAGFKDVQLKRIGPKWYRGVRRHGL 267
+ GFK V + + L
Sbjct: 189 EQGFKVVDGIGVYKRGVNEKMLGQL 213
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 2e-32
Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 18/179 (10%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150
E + V++ G G G T+ + K+ +T +D SP L KA
Sbjct: 19 SEQAETLEKLLHHDTVYP-PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA 77
Query: 151 KQK---EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
++ +K K ++ + LPF D +E+ P+ ++ +VLK GG
Sbjct: 78 RENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGT 137
Query: 208 ACIIGPVYPTFW--------------LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
+I + + + L R A + + Q++GF+ ++++
Sbjct: 138 ITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVE 196
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-31
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGDA 166
V+D+G G G T L +V + +D + + A + ++ + +G A
Sbjct: 21 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 78
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
E LPFP D D + ++ D ++ +RE RVLK G+ ++ P + F +
Sbjct: 79 ESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 138
Query: 227 VWML--------FPKEEEYIEWFQKAGFKDVQLKR 253
E+ F +++
Sbjct: 139 HLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 4e-27
Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 14/180 (7%)
Query: 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143
Y + + + +L + ++ D+G GTG ++ + V ++ S
Sbjct: 12 YSQT-RVPDI--RIVNAIINLLNL-PKGSVIADIGAGTGGYSVALANQ--GLFVYAVEPS 65
Query: 144 PHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203
+A ++ G AE+L P D +S +I ++ ++ +E R+++
Sbjct: 66 IVMRQQAVVHPQVE---WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122
Query: 204 LGGKACII--GPVYPTFWLSRYFADVW---MLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258
G + + WL YF +W + F +E I Q+ + V+
Sbjct: 123 DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPH 182
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 7e-26
Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECKIVEGD 165
M V+DVG G GF + K V K V +D + A +K LK ++++ +
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSE 96
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
+P P + D A + +P + + E RV K II
Sbjct: 97 ENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPE 156
Query: 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRH 265
+V+ E E + AG + ++ +G +
Sbjct: 157 EVY----SEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMI 192
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-26
Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 30/185 (16%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAK 149
+ + + + + + +VD G G G+ L ++ + T +D LA+
Sbjct: 7 DDYVSFLVNTVWKI----TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE 62
Query: 150 AKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
A++ L +EGDA ++ D D + + + P+ +++ +K GGK
Sbjct: 63 ARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGK 121
Query: 208 ACIIGPVYPTFWLSRYF-----------ADVWMLFPKEEEYI-----------EWFQKAG 245
P + + S + LF + + + + G
Sbjct: 122 IICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELG 181
Query: 246 FKDVQ 250
K+++
Sbjct: 182 VKNIE 186
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 4e-25
Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 13/151 (8%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED 168
+ ++VD G G GF +++ + +D + L + K+K V ++
Sbjct: 16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-----FDSVITLSDP 68
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
P + D + A S D Q I E R+LK G+ II
Sbjct: 69 KEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTG----IGPPL 124
Query: 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259
+ E++Y+ WF + F + P +
Sbjct: 125 SIRMDEKDYMGWF--SNFVVEKRFNPTPYHF 153
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 6e-25
Identities = 45/212 (21%), Positives = 76/212 (35%), Gaps = 33/212 (15%)
Query: 70 KKEAFWFYRFLSIVYDHVIN---PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTL 126
E + +S YD P +D ++ A + N ++D+G GTG +
Sbjct: 3 LSEIKRKFDAVSGKYDEQRRKFIPCF--DDFYGVSVSIASVDTENPDILDLGAGTGLLSA 60
Query: 127 GIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185
+++ T++D S L AK + + K +E D F Y D VSA SI
Sbjct: 61 FLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSI 119
Query: 186 EYWPDPQRG--IREAYRVLKLGGKACI----------IGPVYPTFW-------------- 219
+ D + + +Y +LK G I + T W
Sbjct: 120 HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEI 179
Query: 220 LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251
+ Y + + + W ++AGF+DV
Sbjct: 180 AAGYERSKLDKDIEMNQQLNWLKEAGFRDVSC 211
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 2e-24
Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 10/174 (5%)
Query: 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE 158
L +L N N V+D+G G G + I + A + +D + + A ++
Sbjct: 45 KKILSDIEL-NENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNN 102
Query: 159 -CKIVEGDAEDLPFPTDYADRYVSAGSIEY--WPDPQRGIREAYRVLKLGGKA-----CI 210
D FP + D S +I + + ++ Y+ LK G C
Sbjct: 103 KIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162
Query: 211 IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRR 264
Y EEY + FK+V K + W + +
Sbjct: 163 TEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQLLEV 216
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 47/253 (18%), Positives = 78/253 (30%), Gaps = 40/253 (15%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-D 133
+ L+ + D V+ + L V+D+G GTG K V +
Sbjct: 53 SHRKILADIADEVLEKFY----GCGSTLPADGSLE-GATVLDLGCGTGRDVYLASKLVGE 107
Query: 134 AKNVTILDQSPHQLAKAKQKEPLKECKI-----------VEGDAEDL------PFPTDYA 176
V +D +QL A++ K ++G E+L P
Sbjct: 108 HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSV 167
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML------ 230
D +S + +E +RVL+ GG+ D +
Sbjct: 168 DIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGG 227
Query: 231 FPKEEEYIEWFQKAGFKDVQLKRIGP-----KWYRGVRRHGLIMGCSVTGVKPASGDSPL 285
E++ +AGF+DV+L +GP R + C+ K A
Sbjct: 228 ALYLEDFRRLVAEAGFRDVRLVSVGPVDVSDPQLRKLVPDVQFYSCTFRCFKVA------ 281
Query: 286 QLGPKAEDLSKPV 298
L ED +
Sbjct: 282 TLEATREDYGQSA 294
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 3e-24
Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 39/188 (20%)
Query: 102 LEPADLSN--RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK------ 153
L P + + ++D+G G+G +L + +VT +D + + A+
Sbjct: 20 LYPIIHNYLQEDDEILDIGCGSGKISLELASKG--YSVTGIDINSEAIRLAETAARSPGL 77
Query: 154 --EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ---RGIREAYRVLKLGGKA 208
+ + + +A L F D V + PDP+ R I+E +RVLK G
Sbjct: 78 NQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYL 137
Query: 209 CII---GPVYPTFWLSRYF---------------------ADVWMLFPKEEEYIEWFQKA 244
++ + + RY + E+E +
Sbjct: 138 YLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDC 197
Query: 245 GFKDVQLK 252
F+ +
Sbjct: 198 RFEIDYFR 205
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 8e-24
Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 27/213 (12%)
Query: 78 RFLSIVYDHVINPGHWTEDMRDDALEPADLS-----------NRNMLVVDVGGGTGFTTL 126
+ ++ ++ G+W + D +++ A V+DVG G G +
Sbjct: 18 DPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAV 77
Query: 127 GIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSA 182
+ D VT + S Q+ +A L DA DLPF D +
Sbjct: 78 RLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWAL 136
Query: 183 GSIEYWPDPQRGIREAYRVLKLGGKA-----CIIGPVYPTF-WLSRYFADVWML--FPKE 234
S+ + PD R +RE RVL+ GG ++ PV F +
Sbjct: 137 ESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGI 196
Query: 235 EEYIEWFQKAGFKDVQLKRIGP---KWYRGVRR 264
+EY ++A I
Sbjct: 197 DEYESDVRQAELVVTSTVDISAQARPSLVKTAE 229
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 1e-23
Identities = 39/183 (21%), Positives = 73/183 (39%), Gaps = 10/183 (5%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
+ + F+ + + G + + A+ + + + D+G GTG TL + +V
Sbjct: 11 FDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG 70
Query: 135 KNVTILDQSPHQLAKAKQ---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
+ +T +D P + + K + K + G ++LPF + D S G+I Y
Sbjct: 71 Q-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI-YNIG 128
Query: 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWM----LFPKEEEYIEWFQKAGF 246
+RG+ E + LK GG + + T D WM I+ ++AG+
Sbjct: 129 FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGY 188
Query: 247 KDV 249
Sbjct: 189 TPT 191
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 95.8 bits (238), Expect = 3e-23
Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 24/201 (11%)
Query: 84 YD----HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTI 139
YD H A+ P +++G GTG L ++
Sbjct: 12 YDRLRAHPPEVAGQIATAMASAVHPKGEEPV---FLELGVGTGRIALPLIAR--GYRYIA 66
Query: 140 LDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIRE 197
LD L +QK + K+ V+ DA +P P + + PD + + E
Sbjct: 67 LDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAE 126
Query: 198 AYRVLKLGGKACII---GPVYPTFWLSRYFADVW----------MLFPKEEEYIEWFQKA 244
A RVLK GG P + L + + + +E E ++
Sbjct: 127 AIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186
Query: 245 GFKDVQLKRIGPKWYRGVRRH 265
G K + + R R
Sbjct: 187 GLKPRTREVARWREERTPREA 207
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 3e-23
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 12/168 (7%)
Query: 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
PG ++ AL D L+ D+G GTG T+ + HV + VT LD +
Sbjct: 28 PGSPEVTLK--ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDI 84
Query: 150 AKQ---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLG 205
+ + L+ + G +DLPF + D S G+I Y +RG+ E + LK G
Sbjct: 85 FNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI-YNIGFERGLNEWRKYLKKG 143
Query: 206 GKACIIGPVYPTFWLSRYFADVWM----LFPKEEEYIEWFQKAGFKDV 249
G + + T D WM + KAG+ V
Sbjct: 144 GYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPV 191
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 3e-23
Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 25/166 (15%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL 169
V+D+GGGTG +L + + V ++D S L A++K +VE AEDL
Sbjct: 54 NPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREK---GVKNVVEAKAEDL 108
Query: 170 PFPTDYADRYVSAG-SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
PFP+ + ++ G + Y + + E RVL G + TF D W
Sbjct: 109 PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAW 168
Query: 229 MLFPK--------EEEYIEWF-----------QKAGFKDVQLKRIG 255
+ + F GF+ V ++ IG
Sbjct: 169 DQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIG 214
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 8e-23
Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 14/185 (7%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
E + + L R +D+G G G +V+ ++ L+ +P Q + +
Sbjct: 65 RTDEWLASELAMTGVL-QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNE 122
Query: 152 Q---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
+ + L + + G ++P + D S + + PD + +E RVLK G
Sbjct: 123 EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV 182
Query: 208 ACIIGPVY---PTFWLSRYFADVWML--FPKEEEYIEWFQKAGFKDVQLKRIG---PKWY 259
I P+ + D L Y ++ G ++ Y
Sbjct: 183 MAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHY 242
Query: 260 RGVRR 264
V+
Sbjct: 243 SKVKA 247
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 1e-22
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 14/146 (9%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
+++VG GTG+ + + ++ S LA +++ P E V E LPFP
Sbjct: 40 LLEVGAGTGYWL----RRLPYPQKVGVEPSEAMLAVGRRRAP--EATWVRAWGEALPFPG 93
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACI--------IGPVYPTFWLSRYFA 225
+ D + ++E+ D +R + EA RVL+ GG + +Y
Sbjct: 94 ESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLP 153
Query: 226 DVWMLFPKEEEYIEWFQKAGFKDVQL 251
F E+ + +
Sbjct: 154 WAQARFLAREDLKALLGPPEAEGEAV 179
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 1e-22
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 21/176 (11%)
Query: 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KEPL 156
L+ + SN + V+D G G L I ++ S QL KA+ +E
Sbjct: 12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN 70
Query: 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPV 214
+ I +GD LPF + S G+I + D + I E RVLK GG ACI
Sbjct: 71 FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130
Query: 215 YP-------------TFWLSRYFADVWMLFPKEEEYIEWFQKAGF---KDVQLKRI 254
F V + EE ++F+ +D ++RI
Sbjct: 131 TKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVERI 186
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 3e-22
Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 20/161 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
V++ G GTG T ++ + V ++ S AK+K P KE I EGD PT
Sbjct: 49 VLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVPT 105
Query: 174 DYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACIIGPVYPT---------FWLSR 222
D VS + + D ++ I + ++L GGK ++ R
Sbjct: 106 SI-DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQR 164
Query: 223 YFADVW-----MLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258
F + + + F+ GF + W
Sbjct: 165 GFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVW 205
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 1e-21
Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 31/198 (15%)
Query: 84 YDHV-INPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142
Y + + L+ V+D+G G G+ + +H AK V +D
Sbjct: 17 YSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDL 75
Query: 143 SPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVL 202
S L +AK+K + ED+ D + +S+ ++ Y ++ Y L
Sbjct: 76 SERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINL 135
Query: 203 KLGGKACII--GPVYPT----------------FWLSRYF-----------ADVWMLFPK 233
K G PV+ + + RYF DV
Sbjct: 136 KSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195
Query: 234 EEEYIEWFQKAGFKDVQL 251
YI+ K GF+ +
Sbjct: 196 VTTYIQTLLKNGFQINSV 213
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 2e-21
Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 18/197 (9%)
Query: 76 FYRFLSIVYDHVINP-GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
+YR D E + ++ + V+D+ G G + + +
Sbjct: 6 YYRVFPTYTDINSQEYRSRIETLEPLLMK---YMKKRGKVLDLACGVGGFSFLLEDYG-- 60
Query: 135 KNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEYWP--D 190
V +D S + KA++ +E + + GDA L F D + SI ++ +
Sbjct: 61 FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLE 120
Query: 191 PQRGIREAYRVLKLGGKACI-------IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243
+ +E RVLK GK + + P + + + P +EE +
Sbjct: 121 LNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTV-VIE 179
Query: 244 AGFKDVQLKRIGPKWYR 260
+ + W +
Sbjct: 180 FKSEQDSFRVRFNVWGK 196
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 7e-20
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 19/151 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
++D+G GTG T I + V D + + KA+Q P DA +
Sbjct: 61 ILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNYP--HLHFDVADARNFRVDK 116
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-ACIIGPVYPTFWLSRYFADVW---- 228
D S + + +P+ I ++ LK GG+ G ++ +
Sbjct: 117 PL-DAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLG 175
Query: 229 ---------MLFPKEEEYIEWFQKAGFKDVQ 250
FP EY+ +K GF
Sbjct: 176 IHNPQALNPWYFPSIGEYVNILEKQGFDVTY 206
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 1e-19
Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 38/188 (20%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
+VD+G G G+ +H A V LD S LA+A+ P D + L P
Sbjct: 47 IVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQ 105
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII-----------------GPVYP 216
D D S+ ++ Y D R R ++ L GG
Sbjct: 106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRR 165
Query: 217 TFWLSRYFADVWMLFPKE-----------EEYIEWFQKAGFKDVQL---------KRIGP 256
T+ + RY + + ++GF + P
Sbjct: 166 TWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEFCPTDAQITARP 225
Query: 257 KWYRGVRR 264
+ + R
Sbjct: 226 ELAEELDR 233
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 1e-19
Identities = 40/218 (18%), Positives = 68/218 (31%), Gaps = 26/218 (11%)
Query: 68 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLG 127
+ +YR + YD + + ALE N V+++ GTG+ T
Sbjct: 6 GLIESQLSYYRARASEYDAT--FVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRH 63
Query: 128 IVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187
+ A VT LD S +A+A + L + + D D + D A + +
Sbjct: 64 LSGL--ADRVTALDGSAEMIAEAGRH-GLDNVEFRQQDLFDWTPDRQW-DAVFFAHWLAH 119
Query: 188 WPDPQRG--IREAYRVLKLGGKACIIGPVY------------PTFWLSRYFAD-----VW 228
PD + + GG + P + R D +
Sbjct: 120 VPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIV 179
Query: 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHG 266
+F E E G+ + + P + R G
Sbjct: 180 KVFRSPAELTERLTALGW-SCSVDEVHPGFLYATCRPG 216
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 3e-19
Identities = 25/162 (15%), Positives = 44/162 (27%), Gaps = 10/162 (6%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECKIVEGD 165
+D G G G T ++ + + V ++D + L +AK E +
Sbjct: 78 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG 136
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223
+D D D I + D +R L+ G I + +
Sbjct: 137 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD 196
Query: 224 FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG--PKWYRGVR 263
+ AG + +R P V
Sbjct: 197 VDSSVC--RDLDVVRRIICSAGLSLLAEERQENLPDEIYHVY 236
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 6e-19
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 5/149 (3%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDA 166
+ +D G G G T ++ + +L+ H L +AK++ + K +
Sbjct: 91 GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASM 149
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYF 224
E P + D V + Y D + + + L G
Sbjct: 150 ETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDK 209
Query: 225 ADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253
D + + Y F ++G + V+
Sbjct: 210 EDSSLTRS-DIHYKRLFNESGVRVVKEAF 237
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 4e-18
Identities = 36/200 (18%), Positives = 54/200 (27%), Gaps = 42/200 (21%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKE-CKIVEG 164
+V V G L + + +D P L A + L +
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ 177
Query: 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGI---REAYRVLKLGGKACIIGPVYPTFW-- 219
DA L + D S G Y PD R R ++ LK GG P
Sbjct: 178 DAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSP 236
Query: 220 --------------------LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259
+R W + ++AGF D++ +
Sbjct: 237 DSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLR--------F 288
Query: 260 RGVRRHGLIMGCSVTGVKPA 279
R + +V KPA
Sbjct: 289 EDDRAR---LFPTVIARKPA 305
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 3e-17
Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 21/179 (11%)
Query: 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
GH+ + + L+ + +L D+G +G I ++ V+ ++ P +
Sbjct: 14 SGHYYNAVNPNLLKHIKKEWKEVL--DIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQ 69
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK-- 207
AK+K L + + + D+P+ + D + +E+ DP I + +K G
Sbjct: 70 AKEK--LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVIL 127
Query: 208 ------------ACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
A ++ + + F E + F KAG+ ++ R+
Sbjct: 128 ASIPNVSHISVLAPLLAGNWTYTEYGLLDKT-HIRFFTFNEMLRMFLKAGYSISKVDRV 185
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 5e-17
Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 24/186 (12%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
+++ ALE + L+ D+GG TG V++ VTI+D P QL +
Sbjct: 162 FYSDQSFGKALEIVFSHHPKRLL-DIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMR 219
Query: 152 QKEPLKE----CKIVEGD--AEDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLK 203
++ + D+PFPT D + ++ + + + I + +
Sbjct: 220 KQTAGLSGSERIHGHGANLLDRDVPFPTG-FDAVWMSQFLDCFSEEEVISILTRVAQSIG 278
Query: 204 LGGKACIIGPVY------PTFWLSRYFA-DVWML------FPKEEEYIEWFQKAGFKDVQ 250
K I+ ++ + + + ++ I + AG + +
Sbjct: 279 KDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEE 338
Query: 251 LKRIGP 256
++
Sbjct: 339 IQDNIG 344
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 1e-16
Identities = 31/204 (15%), Positives = 67/204 (32%), Gaps = 30/204 (14%)
Query: 72 EAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH 131
E+F + S + + + + + + + ++ +GGG G L I+
Sbjct: 17 ESFRRFLNHSTEHQCMQE---FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSK 73
Query: 132 VDAK------NVTILDQSPHQLAKAKQK----EPLKECKIV--EGDAEDL------PFPT 173
V A+ N +++ S Q+AK K+ L+ K + + +
Sbjct: 74 VQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK 233
D + Y D ++ + +L K II + W + + FP+
Sbjct: 134 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW-DKLWKKYGSRFPQ 192
Query: 234 E--------EEYIEWFQKAGFKDV 249
+ ++ + G K
Sbjct: 193 DDLCQYITSDDLTQMLDNLGLKYE 216
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 34/197 (17%)
Query: 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE 158
LE A L ++ DVGGG G + ++KH + TIL+ P + + K
Sbjct: 180 QLLLEEAKLDGVKKMI-DVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG 237
Query: 159 ----CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLKLGGKACIIG 212
+ + D +P AD + + + + ++A+ ++ GG+ I+
Sbjct: 238 VADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295
Query: 213 PVYPT------FWLSRYFADVWMLFPK-----EEEYIEWFQKAGFKDVQLKRIGPKWYRG 261
V +LS Y M F + Y E + G+KDV + R
Sbjct: 296 MVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKYDHL--- 352
Query: 262 VRRHGLIMGCSVTGVKP 278
V VKP
Sbjct: 353 ----------LVQAVKP 359
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 25/187 (13%)
Query: 91 GHWTEDMRDDALEPADLS----NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 146
H + R + A L + V+D+G G G+ + +D
Sbjct: 29 RHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTL 86
Query: 147 LAKAKQK--EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204
+ A+ + + +P DY D + ++ D + +L
Sbjct: 87 VDAARAAGAGEVHLASYAQLAEAKVPVGKDY-DLICANFALL-HQDIIELLSAMRTLLVP 144
Query: 205 GGKACI--IGPV------YPTFWLSRYFADVWML-------FPKEEEYIEWFQKAGFKDV 249
GG I + P Y W FA F ++ AG + V
Sbjct: 145 GGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204
Query: 250 QLKRIGP 256
L+
Sbjct: 205 SLQEPQH 211
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-14
Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 19/150 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
D+G G G +T + +T +D L KA + P + D
Sbjct: 37 GYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP--NTNFGKADLATWKPAQ 94
Query: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP-------------VYPTFWL 220
D + ++ PD + + L+ GG + P
Sbjct: 95 KA-DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPW 153
Query: 221 SRYFADVWML---FPKEEEYIEWFQKAGFK 247
F+ + P +Y +
Sbjct: 154 KDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 3e-14
Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 29/169 (17%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQ-----KEPLKECKIV 162
L+VDVG G G TL + + + + + D S + A+ + K
Sbjct: 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFK 94
Query: 163 EGDAEDLPF------PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216
++D F D + +W D ++ R AY L+ G I G
Sbjct: 95 ISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYANLRKDGTIAIWG---- 149
Query: 217 TFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRH 265
+FP E+ + + + + +GP W + R
Sbjct: 150 ---------YADPIFPDYPEFDDLMIEVPYGK---QGLGPYWEQPGRSR 186
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 4e-14
Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 7/156 (4%)
Query: 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155
+ D L + + +++DVG GTG T + + L+ + + A+Q P
Sbjct: 27 EDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHP 84
Query: 156 LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY--WPDPQRGIREAYRVLKLGGKACIIGP 213
G DL ++ S+ + + + ++ GG +
Sbjct: 85 --SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF 142
Query: 214 VYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
P+ + +P E + + AGF+
Sbjct: 143 SGPSLEPMYHPVATAYRWP-LPELAQALETAGFQVT 177
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 5e-14
Identities = 37/186 (19%), Positives = 54/186 (29%), Gaps = 37/186 (19%)
Query: 65 RFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFT 124
R Q EAF Y W D +++V D G G
Sbjct: 27 RLFQEDPEAFLLYHRG-----FQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRL 81
Query: 125 TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGS 184
I V ++ LD ++ D +P + D V S
Sbjct: 82 ASSIRNPVHCFDLASLDP-----------------RVTVCDMAQVPLEDESVDVAVFCLS 124
Query: 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA 244
+ + + + EA RVLK GG + A+V F ++ K
Sbjct: 125 L-MGTNIRDFLEEANRVLKPGGLLKV--------------AEVSSRFEDVRTFLRAVTKL 169
Query: 245 GFKDVQ 250
GFK V
Sbjct: 170 GFKIVS 175
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 6e-14
Identities = 30/199 (15%), Positives = 60/199 (30%), Gaps = 33/199 (16%)
Query: 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEP 155
D E + V+D+ GG G +++ I D P A++
Sbjct: 169 DVVSELGVFARAR-TVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD 226
Query: 156 LKE-CKIVEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACII 211
L + E + + F AD + + Y+ + I A ++K GG I+
Sbjct: 227 LGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLIL 286
Query: 212 GPVYPTFWLSRYFA---DVWMLFPK-------EEEYIEWFQKAGFKDVQLKRIGPKWYRG 261
++ + + M+ + AG + R
Sbjct: 287 TMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE---------RS 337
Query: 262 VRRHGLIMGCSVTGVKPAS 280
+ R+ L + G + +
Sbjct: 338 IGRYTL-----LIGQRSSG 351
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 7e-14
Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKE-CKIVEGDA 166
++D+G G+G + T +D S A+AK++ + E + DA
Sbjct: 37 GTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
D G+ + LK GG I P + + A
Sbjct: 96 AGYVANEKC-DVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ 154
Query: 227 VWMLFPKEE-----EYIEWFQKAGFKDVQLKRIGPKWYRGVRRHG 266
+ + + F G+ V++ G R+
Sbjct: 155 ACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQ---EGWDRYE 196
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 2e-13
Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 17/189 (8%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML-----VVDVGGGTGFTTLGIVK 130
Y L+ YD + E ++ + ++ + V+D+ GTG TL + +
Sbjct: 4 LYTLLAEYYDTIYR--RRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE 61
Query: 131 HVDAKNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAG-SIEY 187
V LD L A++K + KI ++GD ++ F ++ D +I Y
Sbjct: 62 R--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF-DAVTMFFSTIMY 118
Query: 188 W--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245
+ D ++ + LK GG F+ R VW EE+ + +
Sbjct: 119 FDEEDLRKLFSKVAEALKPGGVFITD--FPCWFYGGRDGPVVWNEQKGEEKLVIMDWREV 176
Query: 246 FKDVQLKRI 254
VQ R
Sbjct: 177 EPAVQKLRF 185
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 3e-13
Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 15/162 (9%)
Query: 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154
D+ +A ++ R ++D G G G + K +V D P + AKQ
Sbjct: 31 NDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF 88
Query: 155 PLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKACI- 210
P E + V GD D VSAG++ + + + +R L G+A I
Sbjct: 89 P--EARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIG 146
Query: 211 ----IGPVYPTF--WLSRYFADVWMLFPKEEEYIEWFQKAGF 246
G V+ F R ++ F + + Q + F
Sbjct: 147 FGAGRGWVFGDFLEVAERVGLELENAFES-WDLKPFVQGSEF 187
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 4e-13
Identities = 27/163 (16%), Positives = 41/163 (25%), Gaps = 21/163 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFP 172
V++ G G G D SP L A+ P + E + +LP
Sbjct: 52 VLEAGCGHGPDAARFGPQAAR--WAAYDFSPELLKLARANAP--HADVYEWNGKGELPAG 107
Query: 173 TDYA-DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231
VS P I + +GP + A V
Sbjct: 108 LGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDI 161
Query: 232 PKEEE---------YIEWFQKAGFKDVQLKRIGPKWYRGVRRH 265
E+ + +W + F +R VR
Sbjct: 162 VAEDHVSVLAHAPTWEDWQMRGEFMGKLARRADWDAEATVRGM 204
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 5e-13
Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 19/174 (10%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKE-CKIVEGDAE 167
+VD G G G + + + ++ V + S Q + + + + + +
Sbjct: 119 DTLVDAGCGRGGSMVMAHRRFGSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML 177
Query: 168 DLPFPTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKA----CIIGPVY--PTFW 219
D PF ++ + E D E R LK+GG+ P Y P+ W
Sbjct: 178 DTPFDK---GAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKW 234
Query: 220 LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP---KWYRGVRRHGLIMG 270
+S+ A EY+ + + P ++ L+ G
Sbjct: 235 VSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVTG 288
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 9e-13
Identities = 28/183 (15%), Positives = 59/183 (32%), Gaps = 22/183 (12%)
Query: 94 TEDMRDDA---LEPADLSN-RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
+ M + A + + + + V+D+ G + + +H + +D L
Sbjct: 145 SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDW-ASVLEV 203
Query: 150 AKQ---KEPLKE-CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLK 203
AK+ + + + G A ++ + D D + + ++ +R+ L
Sbjct: 204 AKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALA 262
Query: 204 LGGKACIIGPVYP---TFWLSRYFADVWMLFPK-------EEEYIEWFQKAGFKDVQLKR 253
+ GK + + + ML EY F AGF QL
Sbjct: 263 VEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS 322
Query: 254 IGP 256
+
Sbjct: 323 LPT 325
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 18/181 (9%)
Query: 77 YRFLSIVYDHVINPGHWTEDMR--DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
Y + VYD ++ + E + + +EP + D+G GTG TL + H +
Sbjct: 4 YEQFAYVYDELMQDVPYPEWVAWVLEQVEP------GKRIADIGCGTGTATLLLADHYE- 56
Query: 135 KNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEY---WP 189
VT +D S L A++K + D +L P + S+ Y
Sbjct: 57 --VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEA 114
Query: 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
D ++ A R+L GGK V+ + + F E+ WF G + +
Sbjct: 115 DVKQTFDSAARLLTDGGKLLF--DVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPL 172
Query: 250 Q 250
Sbjct: 173 S 173
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 3e-12
Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 11/179 (6%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEP--ADLSNRNMLVVDVGGGTGFTTLGIVKHV 132
+ + VYD + + ++DV GTG K
Sbjct: 3 MYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF 62
Query: 133 DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP- 191
+ L+ S L A+++ L + + +GD D ++ S+ Y
Sbjct: 63 G--DTAGLELSEDMLTHARKR--LPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTE 118
Query: 192 --QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248
+ L+ GG + +P + + + ++ + + +
Sbjct: 119 ELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADV--VRRDGRTVARVSHSVREG 175
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 3e-12
Identities = 39/183 (21%), Positives = 60/183 (32%), Gaps = 26/183 (14%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150
+ + E + +VDVGGGTG T I + T+ DQ P +
Sbjct: 174 ASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNL 232
Query: 151 KQKEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKL 204
E V GD + +P AD + + W D Q + +EA
Sbjct: 233 TGNE---NLNFVGGDMFKSIPS----ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGK 285
Query: 205 GGKACIIGPVYP------TFWLSRYFADVWMLFPK------EEEYIEWFQKAGFKDVQLK 252
GK II + D+ ML ++E+ + AGF ++
Sbjct: 286 DGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT 345
Query: 253 RIG 255
I
Sbjct: 346 PIS 348
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-12
Identities = 19/189 (10%), Positives = 43/189 (22%), Gaps = 33/189 (17%)
Query: 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE-- 154
R E + ++++G G G + + V + +VT +D +
Sbjct: 32 RLAIAEAWQV-KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQA 90
Query: 155 ----------PLKECKIVEGDAEDL-PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLK 203
++DL P + DR V A S+ Y+ +
Sbjct: 91 WNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAA 150
Query: 204 LGGKACI---------------IGPVYPTFWLSRYFADVWM---LFPKEEEYIEWFQKAG 245
+ + + L + +
Sbjct: 151 VCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNT 210
Query: 246 FKDVQLKRI 254
+ +
Sbjct: 211 WTYTAGTIV 219
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 9e-12
Identities = 35/182 (19%), Positives = 53/182 (29%), Gaps = 18/182 (9%)
Query: 71 KEAFWFYR-FLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIV 129
E R FL + + + E D V+D+G G G+ T
Sbjct: 52 AEMMQARRAFLDAGHYQ-----PLRDAIVAQLRERLDDKATA--VLDIGCGEGYYTHAFA 104
Query: 130 KHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189
+ LD S + A ++ P + + LPF D + Y P
Sbjct: 105 DALPEITTFGLDVSKVAIKAAAKRYP--QVTFCVASSHRLPFSDTSMDAIIRI----YAP 158
Query: 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSRYFADVWMLFPKEEEYIEWFQKAGFKD 248
E RV+K GG P L + L E +E F +
Sbjct: 159 ---CKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAE 215
Query: 249 VQ 250
+
Sbjct: 216 LC 217
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-11
Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 15/181 (8%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNML----VVDVGGGTGFTTLGIVK 130
+ ++ +YD V +D +A + A L R+ ++DV GTG +
Sbjct: 13 DYSGEIAELYDLVHQ--GKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLAD 70
Query: 131 HVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
V L+ S LA A+++ P + + GD D ++ SI +
Sbjct: 71 S--FGTVEGLELSADMLAIARRRNP--DAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126
Query: 191 P---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFK 247
+ + G + +P + Y A + + +
Sbjct: 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGT--VEAGGTTVTRVSHSSRE 184
Query: 248 D 248
Sbjct: 185 G 185
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 5e-11
Identities = 23/192 (11%), Positives = 53/192 (27%), Gaps = 11/192 (5%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK 135
++ + V+ + + D L N + ++D G G T + +
Sbjct: 22 YWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF--P 79
Query: 136 NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----PFPTDYADRYVSAGSIEYW--- 188
V LD S L A ++ D ++ D + + +
Sbjct: 80 RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPV 139
Query: 189 PDPQRGIREAYRVLKLGGKACI--IGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246
+ + +L G + +G F+ S + + + F
Sbjct: 140 EKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIF 199
Query: 247 KDVQLKRIGPKW 258
++ P +
Sbjct: 200 TAEDIELYFPDF 211
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 1e-10
Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)
Query: 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143
Y + + A P N+L ++G G T + +H ++T ++ S
Sbjct: 20 YAYNFDF-DVMHPFMVRAFTP-FFRPGNLL--ELGSFKGDFTSRLQEH--FNDITCVEAS 73
Query: 144 PHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAY-RVL 202
++ A+ + + ED P Y D V +E+ DP ++ L
Sbjct: 74 EEAISHAQGRLKDG-ITYIHSRFEDAQLPRRY-DNIVLTHVLEHIDDPVALLKRINDDWL 131
Query: 203 KLGGKACIIGP--------VYPTFWLSRYFADVWML--------FPKEEEYIEWFQKAGF 246
GG+ ++ P + + + + V + +AG
Sbjct: 132 AEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191
Query: 247 KDVQLKRI 254
+ I
Sbjct: 192 QVTYRSGI 199
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 16/173 (9%)
Query: 77 YRFLSIVYDHVINPG----HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV 132
Y + +YD +I W++ + + +L + L D+ GTG T +
Sbjct: 3 YNKFAHIYDKLIRADVDYKKWSDFIIE-KCVENNLVFDDYL--DLACGTGNLTENLCPK- 58
Query: 133 DAKNVTILDQSPHQLAKAKQKEPLKECKI--VEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
KN +D S L++A+ K + K D +L + S Y D
Sbjct: 59 -FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIID 117
Query: 191 P---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240
++ + LK GG + + LS+ + + +E + W
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIF--DINSYYKLSQVLGNNDFNYDDDEVFYYW 168
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 1e-10
Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 14/177 (7%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
++ + Y +I T + R+ A + V+++ G G T +
Sbjct: 50 FYDEGAADTYRDLIQDADGTSEAREFATR---TGPVSGPVLELAAGMGRLTFPFLDL--G 104
Query: 135 KNVTILDQSPHQLAKAKQK------EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188
VT L+ S LA +++ + C +V+GD + +S+GSI
Sbjct: 105 WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSINEL 164
Query: 189 PDPQRG--IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243
+ R L+ GGK ++ S L + +
Sbjct: 165 DEADRRGLYASVREHLEPGGKF-LLSLAMSEAAESEPLERKQELPGRSGRRYVLHVR 220
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 26/159 (16%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDA-EDLP 170
V DVGGG G L +++ +LD+ +A+ + P K+VEGD ++P
Sbjct: 188 VADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVARHRLDAPDVAGRWKVVEGDFLREVP 246
Query: 171 FPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACIIGPVYP---TFWLSR 222
+AD +V + W D R + G+ +I V P S+
Sbjct: 247 ----HADVHVLKRILHNWGDEDSVRILTNCRRV---MPAHGRVLVIDAVVPEGNDAHQSK 299
Query: 223 YFADVWML-FPK-----EEEYIEWFQKAGFKDVQLKRIG 255
D ML E F AG + ++
Sbjct: 300 EM-DFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTS 337
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 3e-10
Identities = 37/159 (23%), Positives = 55/159 (34%), Gaps = 25/159 (15%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFP 172
+VDVGGGTG T I + + D+ P + V GD +P
Sbjct: 192 IVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSN---NLTYVGGDMFTSIPN- 246
Query: 173 TDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACIIGPVYP------TFWLS 221
AD + + W D + +EA GK II V
Sbjct: 247 ---ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQI 303
Query: 222 RYFADVWMLFPK-----EEEYIEWFQKAGFKDVQLKRIG 255
+ DV M EEE+ + F +AGF+ ++ +
Sbjct: 304 KLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLT 342
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 3e-10
Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 23/189 (12%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK 135
+Y + E ++ V+D+G G G L + K +
Sbjct: 13 YYFLFEEKFRGS------RELVKARLRRYIPYFKGCRRVLDIGCGRGEF-LELCKEEGIE 65
Query: 136 NVTILDQSPHQLAKAKQKEPLKECKIVEGDAED--LPFPTDYADRYVSAGSIEYWPDPQ- 192
++ + D + + + K +V+ DA + P Y D + + +E+ +
Sbjct: 66 SIGV-DINEDMIKFCEGK-----FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERL 119
Query: 193 -RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV---WMLFPKEEEYIEWF-QKAGFK 247
+ Y +K I P + + F E +++ + GF+
Sbjct: 120 FELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPET--LKFILEYLGFR 177
Query: 248 DVQLKRIGP 256
DV+++
Sbjct: 178 DVKIEFFEE 186
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-10
Identities = 36/161 (22%), Positives = 53/161 (32%), Gaps = 24/161 (14%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDA-ED 168
VVDVGGG+G ++ + + T+LD + A ++ ++V G +
Sbjct: 173 VVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACIIGPVYPTFWLSRY 223
LP A YV + + W D R EA GG +I V
Sbjct: 232 LP---AGAGGYVLSAVLHDWDDLSAVAILRRCAEA---AGSGGVVLVIEAVAGDEHAGTG 285
Query: 224 FADVWMLFPK------EEEYIEWFQKAGFKDVQLKRIGPKW 258
D+ ML E E +AG I
Sbjct: 286 M-DLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISYVS 325
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 24/159 (15%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDA-ED 168
VD+GGG G ++ T+L++ P +A++ + C+I+ GD E
Sbjct: 206 AVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET 264
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACIIGPVYP-TFWLSR 222
+P D AD Y+ + W D R I A +K + +I + S
Sbjct: 265 IP---DGADVYLIKHVLHDWDDDDVVRILRRIATA---MKPDSRLLVIDNLIDERPAAST 318
Query: 223 YFADVWMLFPK------EEEYIEWFQKAGFKDVQLKRIG 255
F D+ +L E E+ +K+G + + G
Sbjct: 319 LFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCG 357
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 23/161 (14%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDA-ED 168
V+DVGGG G I T+++ +A+++ + EGD +
Sbjct: 186 VLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP 244
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLKLGGKACIIGPVYP-----TFWLS 221
LP AD + + + W D I R R L+ GG+ ++ + S
Sbjct: 245 LP---VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFS 301
Query: 222 RYFADVWMLFPK------EEEYIEWFQKAGFKDVQLKRIGP 256
D+ ML +E ++ AG + G
Sbjct: 302 TLL-DLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGS 341
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-09
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDAEDLP 170
+D+G G G +L + + +V D++ +A ++ E L D +L
Sbjct: 36 TLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT 93
Query: 171 FPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACII---------GPVYPTFW 219
F Y D +S + + I R K GG I+ V F
Sbjct: 94 FDRQY-DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFA 152
Query: 220 -----LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258
L RY+ W + +Y E + D RI ++
Sbjct: 153 FKEGELRRYYEG-W----ERVKYNEDVGELHRTDANGNRIKLRF 191
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-09
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 16/138 (11%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
++++G G G+ ++ +V D SP A+A ++ + L
Sbjct: 47 ILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLG---RPVRTMLFHQLDAID 101
Query: 174 DYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACI---IGPVYPTFWLSRYFADVW 228
Y D + + + P + ++ +R LK GG G L+RY+
Sbjct: 102 AY-DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN--- 157
Query: 229 MLFPKEEEYIEWFQKAGF 246
+P EE + +AG
Sbjct: 158 --YPSEEWLRARYAEAGT 173
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDA-ED 168
VDVGGG+G T I++ + +LD+ L A+ +V GD ++
Sbjct: 171 FVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE 229
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLKLGGKACIIGPVYP---TFWLSRY 223
+P D Y+ + I + + + G+ +I +S
Sbjct: 230 VP---SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVL 286
Query: 224 FADVWMLFP---KE---EEYIEWFQKAGFKDVQLKRIG 255
+ DV + + EE ++ + GF ++ +
Sbjct: 287 W-DVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLP 323
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 1e-08
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 17/136 (12%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAE 167
++ +G G + + NVT +D S +A + + + + D
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR 99
Query: 168 DLPFPTDYAD---------------RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212
L FP+ D R S E + + E RVL GG+ +
Sbjct: 100 KLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159
Query: 213 PVYPTFWLSRYFADVW 228
P F Y +
Sbjct: 160 SAAPHFRTRHYAQAYY 175
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 1e-08
Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGD 165
R V +GGG T ++ HV V +++ P +++ + ++ GD
Sbjct: 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGD 180
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA 225
+ ++ V+A + +R R +R + + +Y T+ R
Sbjct: 181 ETVIDGL-EFDVLMVAALA----EPKRRVFRNIHRYVDTETRI-----IYRTYTGMRAI- 229
Query: 226 DVWMLFPKEEEYIEWFQK 243
+ P ++ I F++
Sbjct: 230 ---LYAPVSDDDITGFRR 244
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 20/158 (12%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIVEGDA-ED 168
V+DVGGG G I + + T+L+ + A+ + +VEGD E
Sbjct: 187 VLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP 245
Query: 169 LPFPTDYADRYVSAGSIEYWPDPQ-RGI-REAYRVLKLGGKACIIGPVYP---TFWLSRY 223
LP AD + + + WPD I L+ GG+ I +F
Sbjct: 246 LPRK---ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFT 302
Query: 224 FADVWMLFP---KE---EEYIEWFQKAGFKDVQLKRIG 255
D+ ML E++ AG +++++
Sbjct: 303 ELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLP 340
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 38/162 (23%), Positives = 57/162 (35%), Gaps = 25/162 (15%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFP 172
+VDVGGG G T I H D PH +++A Q V GD +++P
Sbjct: 205 LVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFP---GVTHVGGDMFKEVPS- 259
Query: 173 TDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACIIGPVYP------TFWLSRYF 224
D + + W D ++ Y L GK ++ + P +
Sbjct: 260 ---GDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFH 316
Query: 225 ADVWMLFPK-------EEEYIEWFQKAGFKDVQLKRI-GPKW 258
D+ ML E E+ + AGF V+ I W
Sbjct: 317 VDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAW 358
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 8e-08
Identities = 37/181 (20%), Positives = 57/181 (31%), Gaps = 25/181 (13%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150
+ T M LE + +VDVGGGTG IV + N D PH + A
Sbjct: 185 SNSTITM-KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDA 242
Query: 151 KQKEPLKECKIVEGD-AEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGK 207
+ + GD + +P D W D + ++ Y L GK
Sbjct: 243 PAFS---GVEHLGGDMFDGVPK----GDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGK 295
Query: 208 ACIIGPVYP------TFWLSRYFADVWMLFPK-------EEEYIEWFQKAGFKDVQLKRI 254
+ + P D ML E+E+ +GF+ ++
Sbjct: 296 VIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASC 355
Query: 255 G 255
Sbjct: 356 A 356
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 1e-07
Identities = 34/220 (15%), Positives = 64/220 (29%), Gaps = 37/220 (16%)
Query: 67 IQHKKEAFWFYRFLSIVYDHVIN---PGHWTEDMRDDALE-PADLSNRNMLVVDVGGGTG 122
K F F ++ V+ +I PG+ ++ + V D+G G
Sbjct: 13 PIAKLGDFIFDENVAEVFPDMIQRSVPGY--SNIITAIGMLAERFVTADSNVYDLGCSRG 70
Query: 123 FTTLGIVKHVDAKNVTI--LDQSPHQLAKAKQK-EPLKECKIVE-GDAEDLPFPTDYADR 178
TL ++++ NV I +D S + + +Q VE + A
Sbjct: 71 AATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASM 130
Query: 179 YVSAGSIEYWPDPQRG--IREAYRVLKLGG------KACIIGPVYPTFWLSRYFADVW-- 228
+ ++++ P R + + Y L G K + +
Sbjct: 131 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRAN 190
Query: 229 -----------------MLFPKEEEYIEWFQKAGFKDVQL 251
M E + + GF V+L
Sbjct: 191 GYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVEL 230
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-07
Identities = 32/135 (23%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 114 VVDVGGGTG-----FTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KEPLKECKIVEGDA 166
++ + G G +LG VT +DQS LAKAKQ +E + V+ +
Sbjct: 33 ILCLAEGEGRNACFLASLGY-------EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL 85
Query: 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
D D + VS Q+ + Y+ LK GG + G +
Sbjct: 86 ADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPK 145
Query: 227 VWMLFPKEEEYIEWF 241
L PK E
Sbjct: 146 DLDLLPKLETLQSEL 160
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-07
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 20/151 (13%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
+ + V+ I L + V+DV GTG ++ +V+
Sbjct: 22 YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE--G 79
Query: 135 KNVTILDQSPHQLAKAKQK--EPLKECKIVEGDAEDLPFPTDYADRYVSAG--------- 183
+VT +D S L A ++ KE + E+ + T D G
Sbjct: 80 FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGN 139
Query: 184 SIEYWPDPQRG-------IREAYRVLKLGGK 207
S + PD + ++ +++ GG
Sbjct: 140 SFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 5e-07
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 22/163 (13%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK--------EPLKECKIVEGD 165
V+D+G G G ++K + +T +D S L +AK + K + +
Sbjct: 33 VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS 92
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACII-------GPVYP 216
D IE+ + + + + + I+ Y
Sbjct: 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQT--VIVSTPNKEYNFHYG 150
Query: 217 TFWLSRYFADVWMLFPKEEEYIEWFQKAGFK---DVQLKRIGP 256
+ +E+ W K K V+ +IG
Sbjct: 151 NLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGE 193
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 6e-07
Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 22/163 (13%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--------KIVEGD 165
V+D+G G G ++K + +T +D S L A+++ ++++G
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92
Query: 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACII-------GPVYP 216
D IE+ + G R + + I+ +
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI--VIVTTPNIEYNVKFA 150
Query: 217 TFWLSRYFADVWMLFPKEEEYIEWFQKAGFK---DVQLKRIGP 256
+ ++ W K + +VQ + IG
Sbjct: 151 NLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGE 193
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 6e-07
Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 31/189 (16%)
Query: 74 FWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD 133
F+ + + H + P V+D+G G G +L +
Sbjct: 91 FYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCK-------VLDLGCGQGRNSLYLSLL-- 141
Query: 134 AKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
+VT D + + +A + KE L D +Y D VS +
Sbjct: 142 GYDVTSWDHNENSIAFLNETKEKENLN-ISTALYDINAANIQENY-DFIVSTVVFMFLNR 199
Query: 191 PQRG--IREAYRVLKLGGKACII---------GPVYPTFW-----LSRYFADVWMLFPKE 234
+ I+ +GG I+ P+ +F L Y+ D W
Sbjct: 200 ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD-WEFLEYN 258
Query: 235 EEYIEWFQK 243
E E +
Sbjct: 259 ENMGELHKT 267
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 7e-07
Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 24/190 (12%)
Query: 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 146
+I G T D+ D L + + + +D+G G G + + +D
Sbjct: 2 LILKGTKTVDLSKDELT-EIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKEN 60
Query: 147 LAKAKQKEPLKECK-------IVEGDAEDLPFPTDYADRYVSAGSIEY-WPDPQRG---- 194
L +K K K V AE LPF + SI + W
Sbjct: 61 LFDISKKIIKKPSKGGLSNVVFVIAAAESLPF---ELKNIADSISILFPWGTLLEYVIKP 117
Query: 195 ----IREAYRVLKLGGKACIIGPV----YPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246
+ + K + R + + E+Y +GF
Sbjct: 118 NRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGF 177
Query: 247 KDVQLKRIGP 256
+ +K +
Sbjct: 178 RIDDVKELDN 187
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQK----EPLKECKIVEGD 165
VVD G G T + V V D +A +K + +++
Sbjct: 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDG 82
Query: 166 AEDLPFPTD-------YADRYVSAG---SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215
+++ D + Y+ +G + + +A +L GG ++ +Y
Sbjct: 83 HQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV--IY 140
Query: 216 P 216
Sbjct: 141 Y 141
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 29/155 (18%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFP 172
+VDVGGG+G I+ D P + A PL + V GD +P
Sbjct: 213 LVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP---PLSGIEHVGGDMFASVP-- 266
Query: 173 TDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGGKACII------GPVYPTFWLS 221
D + W D + +A L GK I+ P
Sbjct: 267 --QGDAMILKAVCHNWSDEKCIEFLSNCHKA---LSPNGKVIIVEFILPEEPNTSEESKL 321
Query: 222 RYFADVWML-FPK-----EEEYIEWFQKAGFKDVQ 250
D M E++Y + + +GF Q
Sbjct: 322 VSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 356
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 4e-06
Identities = 48/298 (16%), Positives = 81/298 (27%), Gaps = 97/298 (32%)
Query: 10 ETFTLIRGMTPKGSSFLASD----------FHGK---------HIPKLSLIAKPRTVQSI 50
LI G+ G +++A D K + P+ L + + I
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 51 KCSLSATSRPASQPRFIQHKKEAFWFYRFLS--------IVYDHVINPGHWTEDMRDDAL 102
+ ++ S +S + H +A R L +V +V N W +A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAW------NAF 262
Query: 103 EPADLS------NRNMLVVDVGGGTGFTTLGIVKHVD-----------AKNVTILDQS-P 144
+LS R V D T + + H K + Q P
Sbjct: 263 ---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 145 HQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAY 199
+ P + I+ AE + D + W I +
Sbjct: 320 RE---VLTTNPRR-LSII---AESIR---DGLAT------WDNWKHVNCDKLTTIIESSL 363
Query: 200 RVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE----EEYIE--WFQKAGFKDVQL 251
VL+ P + F + +FP + WF DV +
Sbjct: 364 NVLE---------PAE----YRKMFDRL-SVFPPSAHIPTILLSLIWFDVI-KSDVMV 406
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 1e-05
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 112 MLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK------EPLKECKIVEG 164
V++ G G+G TL +++ V A V +Q A++ +P ++V
Sbjct: 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 160
Query: 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213
D D P DR ++ P + R+L GG +
Sbjct: 161 DLADSELPDGSVDR-----AVLDMLAPWEVLDAVSRLLVAGGVLMVYVA 204
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-05
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 114 VVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---------EPLKECKIVE 163
+VD G G+G ++ + + + +D SP LA+A + +K + +
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784
Query: 164 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRG--IREAYRVLK 203
G + D IE+ + Q + +
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFH 826
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 8e-05
Identities = 24/149 (16%), Positives = 42/149 (28%), Gaps = 15/149 (10%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECKIVE 163
+ R V+D+G G G L + +D + + A+ + + +
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 120
Query: 164 GDAEDLPFPTDYADRYVSA-GSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTF 218
D+ +S+ S Y R R L+ GG I+
Sbjct: 121 QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGY-FIMTVPSRDV 179
Query: 219 WLSRYFADVWMLFPKEEEYIEWFQKAGFK 247
L RY + Y +K
Sbjct: 180 ILERYKQGRM----SNDFYKIELEKMEDV 204
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 2e-04
Identities = 29/147 (19%), Positives = 43/147 (29%), Gaps = 8/147 (5%)
Query: 84 YDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143
Y NP ED R L+P R++L D+G G TL I + LD
Sbjct: 24 YYGYRNPSC--EDGRLRVLKPEWFRGRDVL--DLGCNVGHLTLSIACKWGPSRMVGLDID 79
Query: 144 PHQLAKAK---QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD-PQRGIREAY 199
+ A+ + +E ++ E P + A
Sbjct: 80 SRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAA 139
Query: 200 RVLKLGGKACIIGPVYPTFWLSRYFAD 226
+ L G + P F Y D
Sbjct: 140 PQVPLDGADTSVFPNNVVFVTGNYVLD 166
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 29/144 (20%)
Query: 89 NPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 148
P H + D + L+ + VVD G G T + +K V D L
Sbjct: 7 RPIHMSHDFLAEVLDDESI------VVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALG 58
Query: 149 KAKQK---EPLKECKIVEGDAEDLPFPTDYADRYVSA--GSIEYWPDP-----------Q 192
K Q+ ++ +++ E+L Y + A ++ Y P
Sbjct: 59 KTSQRLSDLGIENTELILDGHENLD---HYVREPIRAAIFNLGYLPSADKSVITKPHTTL 115
Query: 193 RGIREAYRVLKLGGKACIIGPVYP 216
I + L++GG+ I+ +Y
Sbjct: 116 EAIEKILDRLEVGGRLAIM--IYY 137
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236 | Back alignment and structure |
|---|
Score = 40.3 bits (93), Expect = 4e-04
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KEPLKECKIV 162
A S++ V++VG G + + I++ + + + + +
Sbjct: 55 AAASSKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPL 113
Query: 163 EGDAED-LPFPTD------YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGK 207
+G ED P D D Y + + A+R+LK GG
Sbjct: 114 KGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 165
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 6e-04
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDL 169
M +++VG G+G + I+ ++ K +T++++ L KA + V D+
Sbjct: 112 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 171
Query: 170 P--FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF 218
D I PDP +++ ++K G A P +
Sbjct: 172 ADFISDQMYDAV-----IADIPDPWNHVQKIASMMKPGSVATFYLPNFDQS 217
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 9e-04
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTI-LDQSPHQLAKAKQK-EPLKECKIVEGDAEDL-- 169
+V+ G G+G TL + V + + + A + + V +D+
Sbjct: 97 IVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213
+ D + P P+R + A + LK GG P
Sbjct: 157 GIEEENVDHVILDL-----PQPERVVEHAAKALKPGGFFVAYTP 195
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.89 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.89 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.89 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.89 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.89 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.89 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.89 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.89 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.88 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.88 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.87 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.87 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.87 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.87 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.86 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.86 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.86 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.86 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.86 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.86 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.86 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.86 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.85 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.85 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.85 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.85 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.85 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.85 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.85 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.85 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.84 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.84 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.83 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.83 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.83 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.83 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.83 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.83 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.82 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.82 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.82 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.82 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.82 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.81 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.81 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.81 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.81 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.81 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.81 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.81 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.81 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.8 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.8 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.8 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.8 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.8 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.8 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.79 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.79 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.79 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.79 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.78 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.78 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.78 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.78 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.78 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.77 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.77 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.77 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.77 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.77 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.77 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.77 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.76 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.76 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.76 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.76 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.76 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.75 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.75 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.75 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.75 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.74 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.74 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.74 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.74 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.74 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.73 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.73 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.72 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.72 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.72 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.72 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.72 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.71 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.71 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.71 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.71 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.71 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.7 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.7 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.69 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.69 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.68 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.68 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.68 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.67 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.66 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.66 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.66 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.65 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.65 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.65 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.65 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.65 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.64 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.64 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.64 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.64 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.63 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.63 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.63 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.63 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.63 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.63 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.62 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.62 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.62 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.61 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.61 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.61 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.61 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.6 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.6 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.6 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.6 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.59 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.59 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.59 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.59 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.59 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.58 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.58 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.58 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.58 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.57 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.57 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.57 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.56 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.56 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.56 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.55 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.55 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.55 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.55 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.54 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.54 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.53 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.53 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.53 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.52 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.52 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.52 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.52 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.52 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.52 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.51 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.51 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.51 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.51 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.5 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.49 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.49 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.49 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.49 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.48 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.48 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.47 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.47 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.47 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.47 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.46 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.46 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.46 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.46 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.46 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.46 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.45 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.45 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.45 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.44 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.44 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.44 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.44 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.44 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.43 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.42 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.42 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.42 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.41 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.4 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.4 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.4 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.4 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.4 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.39 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.39 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.39 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.39 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.39 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.39 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.39 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.38 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.38 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.36 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.35 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.35 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.34 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.34 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.34 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.33 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.32 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.31 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.29 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.29 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.29 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.27 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.27 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.27 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.27 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.23 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.22 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.2 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.2 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.2 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.19 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.17 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.17 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.13 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.13 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.13 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.1 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.1 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.07 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.07 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.06 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.06 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.05 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.04 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.03 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.0 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.0 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.94 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.94 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.94 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.93 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.9 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.87 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.85 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.8 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.8 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.8 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.79 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.78 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.77 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.69 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.67 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.62 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.56 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.54 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.53 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.5 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.46 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.44 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.43 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.39 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.37 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.37 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.34 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.33 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.3 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.27 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.22 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.09 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.07 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.04 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.03 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.93 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.69 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.68 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.64 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.51 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.47 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.35 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.05 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.9 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.89 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.77 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.59 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.32 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.29 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.28 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.28 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.1 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.02 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.94 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.89 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.87 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.76 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.73 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.56 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.46 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.45 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.38 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.34 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.29 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.19 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.05 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.93 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.9 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.77 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.73 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.66 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.64 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.62 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.62 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.61 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.61 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.6 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.51 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.49 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.46 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.45 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.39 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.29 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 94.27 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.26 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.14 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.92 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.82 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.78 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.71 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 93.64 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.48 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.43 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 93.4 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.39 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.26 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.2 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.18 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.14 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.11 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.11 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.08 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.7 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 92.42 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.27 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.17 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 92.15 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.08 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 91.94 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 91.75 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.7 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 91.68 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.59 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 91.55 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.52 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 91.36 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 91.3 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 91.17 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 91.17 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.16 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.9 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 90.86 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.66 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 90.41 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 90.41 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.35 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 90.05 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.96 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 89.95 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 89.78 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.75 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 88.88 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 88.64 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 88.51 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.29 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 88.06 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 87.88 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 87.86 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 87.54 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 86.64 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 86.45 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 85.68 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 85.52 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 85.27 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 85.18 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 84.42 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 84.3 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 84.22 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 84.05 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 83.86 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 83.84 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 83.7 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 83.56 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 83.25 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 82.83 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 81.7 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 81.7 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 81.2 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 81.14 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 80.99 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 80.24 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 80.1 |
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=180.16 Aligned_cols=177 Identities=21% Similarity=0.245 Sum_probs=140.1
Q ss_pred hhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-
Q 019684 77 YRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP- 155 (337)
Q Consensus 77 y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~- 155 (337)
++.+...|+......+.........+..+....++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.++++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~ 91 (267)
T 3kkz_A 13 LNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQ 91 (267)
T ss_dssp HHHHHHHHHTSSCSSSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3445556665555555556666666666653357899999999999999999998 67899999999999999997742
Q ss_pred ---CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC----chhHhhhhhhhh
Q 019684 156 ---LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP----TFWLSRYFADVW 228 (337)
Q Consensus 156 ---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----~~~~~~~~~~~~ 228 (337)
.++++++++|+.++++++++||+|++..+++|+ ++..+++++.++|||||++++.++... .......+...+
T Consensus 92 ~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 170 (267)
T 3kkz_A 92 SGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAY 170 (267)
T ss_dssp TTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHC
T ss_pred cCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhC
Confidence 256999999999988888899999999999999 899999999999999999999865321 122222222333
Q ss_pred ccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 229 MLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 229 ~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+.+.+++.++|+++||+++++..+.
T Consensus 171 ~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 171 PEIDTIPNQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp TTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence 356689999999999999999998876
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-23 Score=186.18 Aligned_cols=146 Identities=19% Similarity=0.253 Sum_probs=118.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.++.+|||||||+|.++..+++.+| +.+|+|+|+|+.+++.++++... .+++++++|+.+++++ ++||+|++..++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l 99 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 99 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChh
Confidence 4789999999999999999999987 48999999999999999987432 3799999999988874 589999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCC-----C------c-------hhHhhhh----hhhhccCCCHHHHHHHHHh
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVY-----P------T-------FWLSRYF----ADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~------~-------~~~~~~~----~~~~~~~~~~~~~~~~l~~ 243 (337)
+|++++..+++++.++|||||++++.++.. . . ......+ ......+.+.+++.++|++
T Consensus 100 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 179 (284)
T 3gu3_A 100 LHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSE 179 (284)
T ss_dssp GGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHHH
Confidence 999999999999999999999999987761 0 0 0011111 1112234567889999999
Q ss_pred CCCcEEEEEEcC
Q 019684 244 AGFKDVQLKRIG 255 (337)
Q Consensus 244 aGF~~v~~~~~~ 255 (337)
+||+++++....
T Consensus 180 aGF~~v~~~~~~ 191 (284)
T 3gu3_A 180 LGVKNIECRVSD 191 (284)
T ss_dssp TTCEEEEEEECC
T ss_pred cCCCeEEEEEcC
Confidence 999999886654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=181.09 Aligned_cols=169 Identities=18% Similarity=0.298 Sum_probs=127.5
Q ss_pred HhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 76 ~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
+|+..+..|+..... ...+...++..... .++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++.
T Consensus 4 ~y~~~a~~y~~~~~~---~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~- 76 (261)
T 3ege_A 4 IYNSIGKQYSQTRVP---DIRIVNAIINLLNL-PKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP- 76 (261)
T ss_dssp ---------CCSBCC---CHHHHHHHHHHHCC-CTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-
T ss_pred HHHHHHHHHhhcccc---cHHHHHHHHHHhCC-CCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-
Confidence 566667777664432 23455555555554 3789999999999999999998 4789999999999999887654
Q ss_pred CCCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc---hhHhh----hhhhhh
Q 019684 156 LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---FWLSR----YFADVW 228 (337)
Q Consensus 156 ~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~----~~~~~~ 228 (337)
+++++++|++++++++++||+|++..+++|++++..+++++.++|| ||++++.+..... .+... ......
T Consensus 77 --~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (261)
T 3ege_A 77 --QVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDAL 153 (261)
T ss_dssp --TEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHH
T ss_pred --CCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhh
Confidence 8999999999999988999999999999999999999999999999 9988887654321 11111 112223
Q ss_pred ccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 229 MLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 229 ~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+.+.+++. +|+++||+++++..+.
T Consensus 154 ~~~~~~~~~~-~l~~aGF~~v~~~~~~ 179 (261)
T 3ege_A 154 RFLPLDEQIN-LLQENTKRRVEAIPFL 179 (261)
T ss_dssp TSCCHHHHHH-HHHHHHCSEEEEEECC
T ss_pred hhCCCHHHHH-HHHHcCCCceeEEEec
Confidence 4567788899 9999999999998875
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=176.63 Aligned_cols=173 Identities=19% Similarity=0.246 Sum_probs=135.7
Q ss_pred hHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----C
Q 019684 81 SIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----L 156 (337)
Q Consensus 81 ~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~ 156 (337)
...|+......+........++..+...+++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.++++.. .
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~ 95 (257)
T 3f4k_A 17 CNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCA 95 (257)
T ss_dssp HHHHTTSSCSSSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred HHHHcCccccCCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCC
Confidence 34444444434455666666666664445788999999999999999999965 499999999999999987743 2
Q ss_pred CCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC----chhHhhhhhhhhccCC
Q 019684 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP----TFWLSRYFADVWMLFP 232 (337)
Q Consensus 157 ~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----~~~~~~~~~~~~~~~~ 232 (337)
.+++++++|+.++++++++||+|++..+++|+ ++..+++++.++|||||++++.++... .......+...+..+.
T Consensus 96 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (257)
T 3f4k_A 96 DRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEIS 174 (257)
T ss_dssp TTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCC
T ss_pred CceEEEECChhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCC
Confidence 44999999999999888999999999999999 899999999999999999999875311 1222233333334467
Q ss_pred CHHHHHHHHHhCCCcEEEEEEcC
Q 019684 233 KEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 233 ~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+.+++.++|+++||++++...+.
T Consensus 175 ~~~~~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 175 VIPTCIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp BHHHHHHHHHHTTEEEEEEEECC
T ss_pred CHHHHHHHHHHCCCeEEEEEECC
Confidence 89999999999999999987765
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=177.83 Aligned_cols=142 Identities=17% Similarity=0.103 Sum_probs=118.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... +++++++|++++ .++++||+|++.++++|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~-~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD-GITYIHSRFEDA-QLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS-CEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred CCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC-CeEEEEccHHHc-CcCCcccEEEEhhHHHhhc
Confidence 5678999999999999999988 45899999999999999998765 899999999876 4677899999999999999
Q ss_pred CHHHHHHHHH-HhccCCCEEEEEcCCCCchhHhhh----------------hhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 190 DPQRGIREAY-RVLKLGGKACIIGPVYPTFWLSRY----------------FADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 190 ~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++..+++++. ++|||||++++..+.......... ....+..+++.+++.++|+++||++++..
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 9999999999 999999999998876543221110 01112245799999999999999999887
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
.+.
T Consensus 198 ~~~ 200 (250)
T 2p7i_A 198 GIF 200 (250)
T ss_dssp EEE
T ss_pred eeE
Confidence 643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=174.29 Aligned_cols=158 Identities=22% Similarity=0.225 Sum_probs=125.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~ 175 (337)
....++..+....++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.++++... .+++++++|+.++++. ++
T Consensus 31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~ 109 (234)
T 3dtn_A 31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EK 109 (234)
T ss_dssp HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SC
T ss_pred HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CC
Confidence 334444444434578999999999999999999998899999999999999999998654 3799999999998877 78
Q ss_pred ccEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhH-hhhhhh-----------------------hhc
Q 019684 176 ADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFAD-----------------------VWM 229 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~-----------------------~~~ 229 (337)
||+|++..+++|++++. .+++++.++|||||++++.+........ ...... ...
T Consensus 110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (234)
T 3dtn_A 110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLD 189 (234)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CC
T ss_pred ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccc
Confidence 99999999999998776 5999999999999999998765432211 111000 112
Q ss_pred cCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 230 LFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 230 ~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..++.+++.++|+++||+++++....
T Consensus 190 ~~~~~~~~~~ll~~aGF~~v~~~~~~ 215 (234)
T 3dtn_A 190 KDIEMNQQLNWLKEAGFRDVSCIYKY 215 (234)
T ss_dssp CCCBHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cccCHHHHHHHHHHcCCCceeeeeee
Confidence 34688999999999999999887654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=176.04 Aligned_cols=162 Identities=19% Similarity=0.197 Sum_probs=134.6
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFP 172 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~ 172 (337)
.......++..+... ++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++... .+++++++|+.+++++
T Consensus 40 ~~~~~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~ 117 (266)
T 3ujc_A 40 GLEATKKILSDIELN-ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFP 117 (266)
T ss_dssp HHHHHHHHTTTCCCC-TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCC
T ss_pred hHHHHHHHHHhcCCC-CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCC
Confidence 445566677777653 78899999999999999999976 68999999999999999998765 6899999999998888
Q ss_pred CCCccEEEeccccccc--CCHHHHHHHHHHhccCCCEEEEEcCCCCc-----hhHhhhhhhhhccCCCHHHHHHHHHhCC
Q 019684 173 TDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPVYPT-----FWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~aG 245 (337)
+++||+|++..+++|+ +++..+++++.++|||||++++.++.... .............+++.+++.++|+++|
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 197 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACN 197 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTT
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcC
Confidence 8999999999999999 78889999999999999999998754333 1122222233345679999999999999
Q ss_pred CcEEEEEEcCcc
Q 019684 246 FKDVQLKRIGPK 257 (337)
Q Consensus 246 F~~v~~~~~~~~ 257 (337)
|++++...+...
T Consensus 198 f~~~~~~~~~~~ 209 (266)
T 3ujc_A 198 FKNVVSKDLSDY 209 (266)
T ss_dssp CEEEEEEECHHH
T ss_pred CeEEEEEeCCHH
Confidence 999999887644
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=179.73 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=113.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
+++.+|||||||+|..+..+++.+ ++++|+|+|+|+.|++.|+++.. ..+++++++|+.+++++ .||+|++.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~ 146 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 146 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceee
Confidence 478999999999999999999875 57899999999999999998742 24699999999988864 59999999
Q ss_pred ccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch-hHhhhhh------------------------hhhccCCCHH
Q 019684 183 GSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFA------------------------DVWMLFPKEE 235 (337)
Q Consensus 183 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~------------------------~~~~~~~~~~ 235 (337)
.+++|+++. ..++++++++|||||++++.+...... ....... .......+.+
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~ 226 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 226 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHH
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHH
Confidence 999999755 468999999999999999987654321 1111100 0111246789
Q ss_pred HHHHHHHhCCCcEEEEE
Q 019684 236 EYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~~ 252 (337)
++.++|+++||+.+++.
T Consensus 227 ~~~~~L~~AGF~~ve~~ 243 (261)
T 4gek_A 227 THKARLHKAGFEHSELW 243 (261)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 99999999999988764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=174.89 Aligned_cols=143 Identities=24% Similarity=0.316 Sum_probs=122.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+++++.+|+.++++++++||+|++..+++|++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 6789999999999999999998 78999999999999999998766789999999999998889999999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh-----hccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV-----WMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
++..+++++.++|+|||++++.............+... +...++.+++.++++++||++++...+
T Consensus 131 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 131 EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 99999999999999999999987554432222222211 224578999999999999999998765
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=172.91 Aligned_cols=145 Identities=22% Similarity=0.222 Sum_probs=120.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. .+++++.+|+.++++. ++||+|++..+++|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-TTCCEESCCSSSCCCC-SCCSEEEEESCGGGSC
T ss_pred CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-CceEEEeCChhhcCCC-CCeEEEEECcchhcCC
Confidence 6789999999999999999998 7899999999999999999876 6889999999998877 8899999999999999
Q ss_pred CHHH--HHHHHHHhccCCCEEEEEcCCCCchhHhhh----h----------hhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 190 DPQR--GIREAYRVLKLGGKACIIGPVYPTFWLSRY----F----------ADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 190 ~~~~--~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
++.. +++++.++|||||.+++.++.......... . ......+.+.+++.++|+++||+++....
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 200 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL 200 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence 9876 999999999999999999765443221110 0 01112456899999999999999888777
Q ss_pred cCccc
Q 019684 254 IGPKW 258 (337)
Q Consensus 254 ~~~~~ 258 (337)
....|
T Consensus 201 ~~~~w 205 (220)
T 3hnr_A 201 NHFVW 205 (220)
T ss_dssp SSSEE
T ss_pred cceEE
Confidence 65444
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=175.72 Aligned_cols=162 Identities=16% Similarity=0.117 Sum_probs=129.3
Q ss_pred CcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCC
Q 019684 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDA 166 (337)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~ 166 (337)
.+........++..+.. .++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++.. ..+++++++|+
T Consensus 18 ~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~ 95 (256)
T 1nkv_A 18 NPFTEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95 (256)
T ss_dssp SSCCHHHHHHHHHHTCC-CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CCCCHHHHHHHHHhcCC-CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh
Confidence 34556666666666665 478899999999999999999886 6799999999999999987642 24799999999
Q ss_pred CCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh----Hh-hhhhhhhccCCCHHHHHHHH
Q 019684 167 EDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW----LS-RYFADVWMLFPKEEEYIEWF 241 (337)
Q Consensus 167 ~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~l 241 (337)
.++++ +++||+|++..+++|++++..+++++.++|||||++++.++...... .. .+.......+.+.+++.++|
T Consensus 96 ~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (256)
T 1nkv_A 96 AGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAF 174 (256)
T ss_dssp TTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHH
T ss_pred HhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHH
Confidence 98887 78899999999999999999999999999999999999865322111 11 11111222567899999999
Q ss_pred HhCCCcEEEEEEcC
Q 019684 242 QKAGFKDVQLKRIG 255 (337)
Q Consensus 242 ~~aGF~~v~~~~~~ 255 (337)
+++||+++++....
T Consensus 175 ~~aGf~~~~~~~~~ 188 (256)
T 1nkv_A 175 DDLGYDVVEMVLAD 188 (256)
T ss_dssp HTTTBCCCEEEECC
T ss_pred HHCCCeeEEEEeCC
Confidence 99999998877654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=167.22 Aligned_cols=159 Identities=23% Similarity=0.362 Sum_probs=126.9
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL 169 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~ 169 (337)
...+...++...... ++ +|||+|||+|.++..+++. ++.+++|+|+|+.+++.++++.. ..+++++++|+.++
T Consensus 29 ~~~~~~~~~~~~~~~-~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 105 (219)
T 3dlc_A 29 YPIIAENIINRFGIT-AG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI 105 (219)
T ss_dssp HHHHHHHHHHHHCCC-EE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC
T ss_pred cHHHHHHHHHhcCCC-CC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC
Confidence 445556666655542 34 9999999999999999998 78899999999999999998732 24799999999999
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhh---h-------h---hhccCCCHHH
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF---A-------D---VWMLFPKEEE 236 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~---~-------~---~~~~~~~~~~ 236 (337)
++++++||+|++..+++|++++..+++++.++|||||++++.+............ . . .....++.++
T Consensus 106 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
T 3dlc_A 106 PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVER 185 (219)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHH
T ss_pred CCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHH
Confidence 9888999999999999999999999999999999999999987655432211110 0 0 1122347799
Q ss_pred HHHHHHhCCCcEEEEEEcC
Q 019684 237 YIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 237 ~~~~l~~aGF~~v~~~~~~ 255 (337)
+.++|+++||+++++....
T Consensus 186 ~~~~l~~aGf~~v~~~~~~ 204 (219)
T 3dlc_A 186 FQNVLDEIGISSYEIILGD 204 (219)
T ss_dssp HHHHHHHHTCSSEEEEEET
T ss_pred HHHHHHHcCCCeEEEEecC
Confidence 9999999999998887654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=172.63 Aligned_cols=144 Identities=25% Similarity=0.365 Sum_probs=118.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||||||+|.++..+++.. .+|+|+|+|+.+++.++++.. ..++.++.+|++++++++++||+|++..+++
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH 114 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence 67899999999999999999984 599999999999999987642 2479999999999999889999999999999
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCch-hHhhhhh-------hhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFA-------DVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
|++|+..+++++.++|||||++++.+...+.. ....+.. .....+++.+++.++|+++||+++.+....
T Consensus 115 ~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 191 (260)
T 1vl5_A 115 HFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFH 191 (260)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 99999999999999999999999976543322 1111111 112245789999999999999988887654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=171.81 Aligned_cols=160 Identities=23% Similarity=0.244 Sum_probs=128.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCC
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF 171 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~ 171 (337)
.+...++..+.. .++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++.. ..+++++.+|+.++++
T Consensus 48 ~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (273)
T 3bus_A 48 RLTDEMIALLDV-RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF 125 (273)
T ss_dssp HHHHHHHHHSCC-CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred HHHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC
Confidence 344555555554 378899999999999999999875 6899999999999999987642 2469999999999998
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc---hhHhhhhh----hh-hccCCCHHHHHHHHHh
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT---FWLSRYFA----DV-WMLFPKEEEYIEWFQK 243 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~~~~----~~-~~~~~~~~~~~~~l~~ 243 (337)
++++||+|++..+++|++++..+++++.++|||||++++.++.... ........ .. ...+.+.+++.++|++
T Consensus 126 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 205 (273)
T 3bus_A 126 EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQ 205 (273)
T ss_dssp CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHH
Confidence 8889999999999999999999999999999999999998754321 11111111 11 2346789999999999
Q ss_pred CCCcEEEEEEcCcc
Q 019684 244 AGFKDVQLKRIGPK 257 (337)
Q Consensus 244 aGF~~v~~~~~~~~ 257 (337)
+||+++++..+...
T Consensus 206 aGf~~~~~~~~~~~ 219 (273)
T 3bus_A 206 AELVVTSTVDISAQ 219 (273)
T ss_dssp TTCEEEEEEECHHH
T ss_pred cCCeEEEEEECcHh
Confidence 99999999887643
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-22 Score=171.56 Aligned_cols=141 Identities=15% Similarity=0.052 Sum_probs=118.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC-
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP- 189 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~- 189 (337)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .+++++++|+.++++++++||+|++..+++|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH--PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP 117 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC--TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC--CCCeEEeCcccccccCCCCeEEEEehhhHhcCCH
Confidence 789999999999999999998 779999999999999999885 478999999998888888999999999999997
Q ss_pred -CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 190 -DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 190 -~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
+...+++++.++|||||++++..+.......... ......+++.+++.++|+++||+++++.....
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYH-PVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECC-SSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhc-hhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 8899999999999999999998765443100000 00112346899999999999999999998774
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=168.70 Aligned_cols=145 Identities=22% Similarity=0.192 Sum_probs=123.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++..+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh
Confidence 367899999999999999999985 56899999999999999998742 24799999999998888889999999999
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
++|++++..+++++.++|||||++++.+........ ......+++.+++.++++++||++++...+...
T Consensus 116 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 184 (219)
T 3dh0_A 116 FHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK----GPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKY 184 (219)
T ss_dssp GGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS----SCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTT
T ss_pred hhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc----CCchhcccCHHHHHHHHHHCCCEEEEEEeeCCc
Confidence 999999999999999999999999998754432211 112234568999999999999999999887754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=166.46 Aligned_cols=143 Identities=20% Similarity=0.156 Sum_probs=115.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++.. ..+++++.+|+.++ +++++||+|++..+++|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~ 120 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHG-LDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHV 120 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGC-CTTEEEEECCTTSC-CCSSCEEEEEEESCGGGS
T ss_pred CCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcC-CCCeEEEecccccC-CCCCceeEEEEechhhcC
Confidence 46789999999999999999998 789999999999999999843 26799999999887 678899999999999999
Q ss_pred CCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh-----------------hhccCCCHHHHHHHHHhCCCcEE
Q 019684 189 PDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-----------------VWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 189 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+++ ..+++++.++|||||.+++.+...+.......... ....+.+.+++.++|+++||+++
T Consensus 121 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 200 (218)
T 3ou2_A 121 PDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCS 200 (218)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEE
Confidence 986 78999999999999999998776543222221110 01235699999999999999966
Q ss_pred EEEEcC
Q 019684 250 QLKRIG 255 (337)
Q Consensus 250 ~~~~~~ 255 (337)
......
T Consensus 201 ~~~~~~ 206 (218)
T 3ou2_A 201 VDEVHP 206 (218)
T ss_dssp EEEEET
T ss_pred eeeccc
Confidence 555544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-21 Score=169.03 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=124.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC--CCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--PFP 172 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~--~~~ 172 (337)
+.+...+.......+++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ ++++.+|+.+. +++
T Consensus 26 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-----~~~~~~d~~~~~~~~~ 98 (240)
T 3dli_A 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK-----FNVVKSDAIEYLKSLP 98 (240)
T ss_dssp HHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT-----SEEECSCHHHHHHTSC
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh-----cceeeccHHHHhhhcC
Confidence 4455555555554457899999999999999999998 77999999999999999965 78999998764 678
Q ss_pred CCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHh-hh-hhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 173 TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLS-RY-FADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+++||+|++..+++|++++ ..+++++.++|||||++++..+........ .. .......+++.+++.++|+++||++
T Consensus 99 ~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 178 (240)
T 3dli_A 99 DKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRD 178 (240)
T ss_dssp TTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEE
T ss_pred CCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeE
Confidence 8899999999999999955 899999999999999999987765433211 11 1112234678999999999999999
Q ss_pred EEEEEcC
Q 019684 249 VQLKRIG 255 (337)
Q Consensus 249 v~~~~~~ 255 (337)
+++....
T Consensus 179 ~~~~~~~ 185 (240)
T 3dli_A 179 VKIEFFE 185 (240)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9988876
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=172.46 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=121.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.++.+|||||||+|.++..+++..|+.+|+|+|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++..++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 47899999999999999999999888999999999999999998742 257999999999988888999999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCc-------hhHhhhhh-------hhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPT-------FWLSRYFA-------DVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+|++++..+++++.++|||||++++.++.... ........ .......+.+++.++|+++||+++++
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~ 195 (276)
T 3mgg_A 116 EHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRV 195 (276)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEE
T ss_pred hhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEE
Confidence 99999999999999999999999998653211 11111111 11112356788999999999999998
Q ss_pred EEcC
Q 019684 252 KRIG 255 (337)
Q Consensus 252 ~~~~ 255 (337)
....
T Consensus 196 ~~~~ 199 (276)
T 3mgg_A 196 EPRM 199 (276)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 8763
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=166.20 Aligned_cols=152 Identities=20% Similarity=0.322 Sum_probs=123.0
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCcc
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYAD 177 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD 177 (337)
.+..... .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..+++++.+|++++++++++||
T Consensus 13 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 89 (239)
T 1xxl_A 13 MIKTAEC-RAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFD 89 (239)
T ss_dssp HHHHHTC-CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEE
T ss_pred HHHHhCc-CCCCEEEEEccCcCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEE
Confidence 3344444 37899999999999999999988 4599999999999999987642 2479999999999998888999
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch-hHhhhhh-------hhhccCCCHHHHHHHHHhCCCcEE
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFA-------DVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+|++..+++|++++..+++++.++|||||++++.+...+.. ....+.. ......++.+++.++|+++||+++
T Consensus 90 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~ 169 (239)
T 1xxl_A 90 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 169 (239)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred EEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEE
Confidence 99999999999999999999999999999999986554322 1211111 112345789999999999999988
Q ss_pred EEEEcC
Q 019684 250 QLKRIG 255 (337)
Q Consensus 250 ~~~~~~ 255 (337)
.+....
T Consensus 170 ~~~~~~ 175 (239)
T 1xxl_A 170 DIQKWN 175 (239)
T ss_dssp EEEEEE
T ss_pred EEEeec
Confidence 887654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=174.53 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=126.7
Q ss_pred HHHHhcccc----CCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC
Q 019684 97 MRDDALEPA----DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED 168 (337)
Q Consensus 97 ~~~~~l~~~----~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~ 168 (337)
....++..+ .. .++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++.. ..+++++.+|+.+
T Consensus 66 ~~~~l~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 143 (297)
T 2o57_A 66 TDEWLASELAMTGVL-QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143 (297)
T ss_dssp HHHHHHHHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred HHHHHHHHhhhccCC-CCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence 334444444 33 478899999999999999999875 5799999999999999987642 2579999999999
Q ss_pred CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch----hHhhhhhhh-hccCCCHHHHHHHHHh
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF----WLSRYFADV-WMLFPKEEEYIEWFQK 243 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~l~~ 243 (337)
+|+++++||+|++..+++|++++..+++++.++|||||++++.++..... ......... ...+.+.+++.++|++
T Consensus 144 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (297)
T 2o57_A 144 IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKE 223 (297)
T ss_dssp CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred CCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99988999999999999999999999999999999999999987543221 111222211 1235689999999999
Q ss_pred CCCcEEEEEEcCc
Q 019684 244 AGFKDVQLKRIGP 256 (337)
Q Consensus 244 aGF~~v~~~~~~~ 256 (337)
+||+++++..+..
T Consensus 224 aGf~~~~~~~~~~ 236 (297)
T 2o57_A 224 CGLVTLRTFSRPD 236 (297)
T ss_dssp TTEEEEEEEECHH
T ss_pred CCCeEEEEEECch
Confidence 9999999988763
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=166.16 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=132.8
Q ss_pred hhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 019684 71 KEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150 (337)
Q Consensus 71 ~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a 150 (337)
.....+|+.....|...... .. ....++... +++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~---~~-~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a 81 (211)
T 3e23_A 11 DDTLRFYRGNATAYAERQPR---SA-TLTKFLGEL---PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEA 81 (211)
T ss_dssp HHHHHHHHHSHHHHTTCCCC---CH-HHHHHHTTS---CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccch---hH-HHHHHHHhc---CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHH
Confidence 34456777778888776554 22 233333333 36789999999999999999988 77999999999999999
Q ss_pred HhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhh
Q 019684 151 KQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228 (337)
Q Consensus 151 ~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 228 (337)
+++. ++.++.+|+.+++ .+++||+|++..+++|++ +...+++++.++|||||++++..+........ .....
T Consensus 82 ~~~~---~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~ 155 (211)
T 3e23_A 82 SRRL---GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD--KLARY 155 (211)
T ss_dssp HHHH---TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--TTSCE
T ss_pred HHhc---CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--ccchh
Confidence 9875 5678899998887 678899999999999998 67799999999999999999985543321110 01112
Q ss_pred ccCCCHHHHHHHHHhCC-CcEEEEEEcC
Q 019684 229 MLFPKEEEYIEWFQKAG-FKDVQLKRIG 255 (337)
Q Consensus 229 ~~~~~~~~~~~~l~~aG-F~~v~~~~~~ 255 (337)
..+++.+++.++|+++| |+++++....
T Consensus 156 ~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 156 YNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp ECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred ccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 34679999999999999 9999988765
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=169.62 Aligned_cols=155 Identities=15% Similarity=0.063 Sum_probs=120.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC---CeEEEEcCCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECKIVEGDAEDLPFPT 173 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~~~d~~~~~~~~ 173 (337)
+...++.......++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.... +++++.+|+.++++.+
T Consensus 66 ~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 144 (241)
T 2ex4_A 66 FLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP 144 (241)
T ss_dssp HHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS
T ss_pred HHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCC
Confidence 334444443322368899999999999999988875 569999999999999999887543 5889999998888878
Q ss_pred CCccEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh-hhccCCCHHHHHHHHHhCCCcEEE
Q 019684 174 DYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-VWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
++||+|++..+++|++++. .+++++.++|||||++++.++..... ..+.. ......+.+++.++|+++||++++
T Consensus 145 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 145 DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---VILDDVDSSVCRDLDVVRRIICSAGLSLLA 221 (241)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---EEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---ceecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence 8899999999999998855 89999999999999999987543320 00000 011124789999999999999999
Q ss_pred EEEcC
Q 019684 251 LKRIG 255 (337)
Q Consensus 251 ~~~~~ 255 (337)
.....
T Consensus 222 ~~~~~ 226 (241)
T 2ex4_A 222 EERQE 226 (241)
T ss_dssp EEECC
T ss_pred eeecC
Confidence 88764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=172.40 Aligned_cols=144 Identities=19% Similarity=0.295 Sum_probs=119.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC-CCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-FPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~-~~~~~fD~i~~~~~ 184 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++.+|+.+++ +.+++||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4689999999999999999998 78999999999999999987532 56899999998877 77889999999999
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhh--------h---------hhhccCCCHHHHHHHHHhCCCc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF--------A---------DVWMLFPKEEEYIEWFQKAGFK 247 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~l~~aGF~ 247 (337)
++|++++..+++++.++|||||++++..+........... . ..+..+++.+++.++|+++||+
T Consensus 146 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 225 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQ 225 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCE
T ss_pred hhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCc
Confidence 9999999999999999999999999987653322111110 0 0111356899999999999999
Q ss_pred EEEEEEcC
Q 019684 248 DVQLKRIG 255 (337)
Q Consensus 248 ~v~~~~~~ 255 (337)
+++...+.
T Consensus 226 v~~~~~~~ 233 (285)
T 4htf_A 226 IMGKTGVR 233 (285)
T ss_dssp EEEEEEES
T ss_pred eeeeeeEE
Confidence 99998875
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=166.75 Aligned_cols=145 Identities=23% Similarity=0.228 Sum_probs=118.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....+++++.+|+.++++++++||+|++..+++|++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 122 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred CCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence 68899999999999999999883 23999999999999999999877789999999999888888999999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCCCCch------------------hHhhhhh-----------hhhccCCCHHHHHHH
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPVYPTF------------------WLSRYFA-----------DVWMLFPKEEEYIEW 240 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------------------~~~~~~~-----------~~~~~~~~~~~~~~~ 240 (337)
++..+++++.++|||||++++..+..... ....++. .......+.+++.++
T Consensus 123 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 202 (253)
T 3g5l_A 123 SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQT 202 (253)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHH
Confidence 99999999999999999999974321000 0000000 001112389999999
Q ss_pred HHhCCCcEEEEEEcC
Q 019684 241 FQKAGFKDVQLKRIG 255 (337)
Q Consensus 241 l~~aGF~~v~~~~~~ 255 (337)
|+++||+++++....
T Consensus 203 l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 203 LLKNGFQINSVIEPE 217 (253)
T ss_dssp HHHTTEEEEEEECCC
T ss_pred HHHcCCeeeeeecCC
Confidence 999999999998765
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=166.01 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=119.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCc
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 176 (337)
....++..+.. .++.+|||||||+|.++..+++.+|+.+++|+|+|+.+++.++++. .+++++.+|+++++ ++++|
T Consensus 21 ~~~~l~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~--~~~~~~~~d~~~~~-~~~~f 96 (259)
T 2p35_A 21 PARDLLAQVPL-ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL--PNTNFGKADLATWK-PAQKA 96 (259)
T ss_dssp HHHHHHTTCCC-SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS--TTSEEEECCTTTCC-CSSCE
T ss_pred HHHHHHHhcCC-CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--CCcEEEECChhhcC-ccCCc
Confidence 33445555544 3678999999999999999999888899999999999999999883 57899999998887 67889
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh----Hhhhhh------------hhhccCCCHHHHHHH
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW----LSRYFA------------DVWMLFPKEEEYIEW 240 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~ 240 (337)
|+|++..+++|++++..+++++.++|||||++++..+...... ...... .....+.+.+++.++
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp EEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred CEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 9999999999999999999999999999999999875432211 111100 012346789999999
Q ss_pred HHhCCCcEE
Q 019684 241 FQKAGFKDV 249 (337)
Q Consensus 241 l~~aGF~~v 249 (337)
|+++||++.
T Consensus 177 l~~aGf~v~ 185 (259)
T 2p35_A 177 LSPKSSRVD 185 (259)
T ss_dssp HGGGEEEEE
T ss_pred HHhcCCceE
Confidence 999999743
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=167.98 Aligned_cols=144 Identities=22% Similarity=0.254 Sum_probs=118.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++.+|||||||+|.++..+++. +. +++|+|+|+.+++.++++....+++++.+|+.++++++++||+|++..+++|+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc
Confidence 6789999999999999999987 45 99999999999999999887678999999998888878899999999999999
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCc------hh-----------Hh----------hhhh-hhhccCCCHHHHHHH
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPT------FW-----------LS----------RYFA-DVWMLFPKEEEYIEW 240 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~-----------~~----------~~~~-~~~~~~~~~~~~~~~ 240 (337)
+++..+++++.++|+|||++++..+.... .+ .. .+.. ......++.+++.++
T Consensus 121 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 200 (243)
T 3bkw_A 121 EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNA 200 (243)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHH
T ss_pred chHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHH
Confidence 99999999999999999999987532100 00 00 0000 111123589999999
Q ss_pred HHhCCCcEEEEEEcC
Q 019684 241 FQKAGFKDVQLKRIG 255 (337)
Q Consensus 241 l~~aGF~~v~~~~~~ 255 (337)
|+++||+++++....
T Consensus 201 l~~aGF~~~~~~~~~ 215 (243)
T 3bkw_A 201 LIRSGFAIEHVEEFC 215 (243)
T ss_dssp HHHTTCEEEEEEECC
T ss_pred HHHcCCEeeeeccCC
Confidence 999999999998764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=180.56 Aligned_cols=147 Identities=22% Similarity=0.233 Sum_probs=119.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhC-----------CCCCeEEEEcCCCCC------C
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE-----------PLKECKIVEGDAEDL------P 170 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~~~d~~~~------~ 170 (337)
.++.+|||||||+|.++..+++.+ ++.+|+|+|+|+.+++.++++. ...+++++++|++++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 378899999999999999999886 6789999999999999999873 226899999999887 8
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch---hHh---hhhhhhhccCCCHHHHHHHHHhC
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF---WLS---RYFADVWMLFPKEEEYIEWFQKA 244 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~l~~a 244 (337)
+++++||+|++..+++|++++..+++++.++|||||++++.+...... ... ...........+.+++.++|+++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 241 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEA 241 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHT
T ss_pred CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHC
Confidence 888899999999999999999999999999999999999986543211 111 01111222456789999999999
Q ss_pred CCcEEEEEEcC
Q 019684 245 GFKDVQLKRIG 255 (337)
Q Consensus 245 GF~~v~~~~~~ 255 (337)
||+++++....
T Consensus 242 GF~~v~~~~~~ 252 (383)
T 4fsd_A 242 GFRDVRLVSVG 252 (383)
T ss_dssp TCCCEEEEEEE
T ss_pred CCceEEEEecc
Confidence 99988775543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=171.59 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=125.3
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCC
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~ 175 (337)
.+++.+....++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++.. ..+++++.+|+.++++++++
T Consensus 107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (312)
T 3vc1_A 107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA 185 (312)
T ss_dssp HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence 345555423478999999999999999999875 6899999999999999998642 24699999999999888889
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch------hHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------WLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
||+|++..+++|+ ++..+++++.++|||||++++.+...... ............+++.+++.++|+++||+++
T Consensus 186 fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~ 264 (312)
T 3vc1_A 186 VTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPH 264 (312)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEE
T ss_pred EeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEE
Confidence 9999999999999 69999999999999999999986543321 1111111222346789999999999999999
Q ss_pred EEEEcCc
Q 019684 250 QLKRIGP 256 (337)
Q Consensus 250 ~~~~~~~ 256 (337)
++..+..
T Consensus 265 ~~~~~~~ 271 (312)
T 3vc1_A 265 TIVDLTP 271 (312)
T ss_dssp EEEECHH
T ss_pred EEEeCCH
Confidence 9998864
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=162.15 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=120.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--------CeEEEEcCCCCCCCCCCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIVEGDAEDLPFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~~~d~~~~~~~~~~fD~i~ 180 (337)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... ++.++.+|+.++++++++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 36789999999999999999998 789999999999999999886543 46899999999888889999999
Q ss_pred ecccccccCCHH---HHHHHHHHhccCCCEEEEEcCCCCch--hHhhhh-h---------------------hhhccCCC
Q 019684 181 SAGSIEYWPDPQ---RGIREAYRVLKLGGKACIIGPVYPTF--WLSRYF-A---------------------DVWMLFPK 233 (337)
Q Consensus 181 ~~~~l~~~~~~~---~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~-~---------------------~~~~~~~~ 233 (337)
+..+++|++++. .+++++.++|||||++++.++..... ...... . .....+++
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 999999999987 89999999999999999987644311 111110 0 01123678
Q ss_pred HHHHHHHHHhCCCcEEEEEEcC
Q 019684 234 EEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 234 ~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.+++.++|+++||+++++....
T Consensus 187 ~~~l~~ll~~aGf~~~~~~~~~ 208 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYFRVKE 208 (235)
T ss_dssp HHHHHHHHHTTTEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEecc
Confidence 9999999999999999998764
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=168.96 Aligned_cols=155 Identities=23% Similarity=0.259 Sum_probs=123.6
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCC
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTD 174 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~ 174 (337)
..++..+.. .++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.++++.. ..+++++.+|+.++ ++
T Consensus 62 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~ 136 (302)
T 3hem_A 62 KLALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DE 136 (302)
T ss_dssp HHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CC
T ss_pred HHHHHHcCC-CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CC
Confidence 344555544 3788999999999999999999865 899999999999999998743 23699999999876 67
Q ss_pred CccEEEecccccccCCH---------HHHHHHHHHhccCCCEEEEEcCCCCchhHh---------------hhhhhh---
Q 019684 175 YADRYVSAGSIEYWPDP---------QRGIREAYRVLKLGGKACIIGPVYPTFWLS---------------RYFADV--- 227 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~---------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------~~~~~~--- 227 (337)
+||+|++..+++|++|+ ..+++++.++|||||++++.+......... .+....
T Consensus 137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 216 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 216 (302)
T ss_dssp CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT
T ss_pred CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCC
Confidence 89999999999999775 689999999999999999987655433211 111111
Q ss_pred hccCCCHHHHHHHHHhCCCcEEEEEEcCccc
Q 019684 228 WMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (337)
Q Consensus 228 ~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 258 (337)
...+.+.+++.++++++||+++++..++..+
T Consensus 217 ~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 247 (302)
T 3hem_A 217 GGRLPRISQVDYYSSNAGWKVERYHRIGANY 247 (302)
T ss_dssp TCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred CCCCCCHHHHHHHHHhCCcEEEEEEeCchhH
Confidence 1135789999999999999999999887554
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=164.47 Aligned_cols=144 Identities=21% Similarity=0.235 Sum_probs=115.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..+++++.+|++++++++++||+|++..+++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 47789999999999999999987 6899999999999999998852 3579999999999888888999999999999
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCC-ch---h---Hhhhhhhhh------ccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYP-TF---W---LSRYFADVW------MLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-~~---~---~~~~~~~~~------~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
|++++..+++++.++|||||++++.-...+ .. + ......... ..+.+.+++.++|+++||+++....
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 195 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREV 195 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceEEE
Confidence 999999999999999999999998721110 11 0 111111111 1234678999999999999776654
Q ss_pred c
Q 019684 254 I 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 196 ~ 196 (263)
T 2yqz_A 196 A 196 (263)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-21 Score=169.10 Aligned_cols=138 Identities=18% Similarity=0.204 Sum_probs=111.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecc-ccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAG-SIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~-~l~~~ 188 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. +++++++|+.++++ +++||+|++.. +++|+
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP--DAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT--TSEEEECCTTTCCC-SCCEEEEEECTTGGGGS
T ss_pred CCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--CCEEEECChHHCCc-cCCcCEEEEcCchhhhc
Confidence 6789999999999999999988 6799999999999999999864 78999999998887 67899999998 99999
Q ss_pred CC---HHHHHHHHHHhccCCCEEEEEcCCCCchhHhh--------------------------------h----------
Q 019684 189 PD---PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR--------------------------------Y---------- 223 (337)
Q Consensus 189 ~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------------------------------~---------- 223 (337)
++ ...+++++.++|||||++++.....+...... +
T Consensus 125 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
T 3pfg_A 125 AGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGIT 204 (263)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEE
Confidence 64 45789999999999999999743322110000 0
Q ss_pred --hhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 224 --FADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 224 --~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
.......+++.+++.++|+++||+++++.
T Consensus 205 ~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~ 235 (263)
T 3pfg_A 205 HHEESHRITLFTREQYERAFTAAGLSVEFMP 235 (263)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred EEEEEEEEEeecHHHHHHHHHHCCCEEEEee
Confidence 00011245789999999999999988773
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-21 Score=163.38 Aligned_cols=138 Identities=9% Similarity=-0.022 Sum_probs=110.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---------------CCCeEEEEcCCCCCCCCC-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------LKECKIVEGDAEDLPFPT- 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~~~~~- 173 (337)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.. ..+++++++|+.++++.+
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 6789999999999999999998 7899999999999999998743 357999999999988765
Q ss_pred CCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 174 DYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
++||+|++..+++|++.. ..++++++++|||||++++......... . .. .....+.+++.+++++ ||+++.+
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---~-~~-~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---L-EG-PPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---S-SS-CCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc---c-CC-CCCCCCHHHHHHHhcC-CcEEEEe
Confidence 789999999999998754 4689999999999999554432222110 0 00 0112578999999998 9998888
Q ss_pred EEcC
Q 019684 252 KRIG 255 (337)
Q Consensus 252 ~~~~ 255 (337)
....
T Consensus 174 ~~~~ 177 (203)
T 1pjz_A 174 GGQD 177 (203)
T ss_dssp EESS
T ss_pred cccc
Confidence 7765
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=164.45 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=117.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++. .++.++.+|++++++ +++||+|++..+++|++
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY--PHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC--TTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC--CCCEEEECChhhCCc-CCCcCEEEEcchhhhCc
Confidence 678999999999999999998 4889999999999999999886 578899999998887 56899999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCCCCch-hHhhh----hhhh---------hccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPVYPTF-WLSRY----FADV---------WMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~----~~~~---------~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++..+++++.++|||||++++..+..... ..... .... ...+.+.+++.++|+++||+++++....
T Consensus 132 d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 211 (279)
T 3ccf_A 132 EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFN 211 (279)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEEec
Confidence 99999999999999999999986654321 11111 1111 0135689999999999999998887654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=165.90 Aligned_cols=175 Identities=18% Similarity=0.115 Sum_probs=125.4
Q ss_pred hhhhhHhhhcccCCCcchHHHHHHhccccCC-CCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 77 YRFLSIVYDHVINPGHWTEDMRDDALEPADL-SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 77 y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
|+.++..|+...........+...+...+.. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++..
T Consensus 3 y~~~a~~yd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~ 80 (246)
T 1y8c_A 3 YNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFR 80 (246)
T ss_dssp HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHh
Confidence 5555666665544122223333333332221 136789999999999999999988 6799999999999999998743
Q ss_pred C--CCeEEEEcCCCCCCCCCCCccEEEecc-ccccc---CCHHHHHHHHHHhccCCCEEEEEcCCCCchh----------
Q 019684 156 L--KECKIVEGDAEDLPFPTDYADRYVSAG-SIEYW---PDPQRGIREAYRVLKLGGKACIIGPVYPTFW---------- 219 (337)
Q Consensus 156 ~--~~~~~~~~d~~~~~~~~~~fD~i~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------- 219 (337)
. .+++++++|+.+++++ ++||+|++.. +++|+ .+...+++++.++|||||++++..+......
T Consensus 81 ~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~ 159 (246)
T 1y8c_A 81 SQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNY 159 (246)
T ss_dssp HTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEE
T ss_pred hcCCCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEe
Confidence 2 2689999999888776 7899999998 99999 4567899999999999999998543211000
Q ss_pred --------Hhh-----------------------hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 220 --------LSR-----------------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 220 --------~~~-----------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
... ........+++.+++.++|+++||+++++...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 160 DDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cCCcEEEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 000 00001124679999999999999999988654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=170.78 Aligned_cols=146 Identities=21% Similarity=0.194 Sum_probs=118.1
Q ss_pred CCCCEEEEEcCcccHHHHHHH-hhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~ 183 (337)
.++.+|||||||+|.++..++ ...|+.+|+|+|+|+.+++.++++... .+++++++|+.+++++ ++||+|++..
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 478999999999999999986 456789999999999999999988653 3489999999988877 8899999999
Q ss_pred cccccCCHHH---HHHHHHHhccCCCEEEEEcCCCCchh------H-----------hh-hhh----hhhccCCCHHHHH
Q 019684 184 SIEYWPDPQR---GIREAYRVLKLGGKACIIGPVYPTFW------L-----------SR-YFA----DVWMLFPKEEEYI 238 (337)
Q Consensus 184 ~l~~~~~~~~---~l~~~~~~LkpgG~l~i~~~~~~~~~------~-----------~~-~~~----~~~~~~~~~~~~~ 238 (337)
+++|++++.. +++++.++|||||++++.+...+... . .. .+. ..+..+++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 9999998875 79999999999999999875432110 0 00 001 1112457899999
Q ss_pred HHHHhCCCcEEEEEEcC
Q 019684 239 EWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 239 ~~l~~aGF~~v~~~~~~ 255 (337)
++|+++||+++++....
T Consensus 276 ~~l~~aGF~~v~~~~~~ 292 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDR 292 (305)
T ss_dssp HHHHHTTCEEEEEECCT
T ss_pred HHHHHCCCEEEEEEccc
Confidence 99999999999998744
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=170.13 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=107.1
Q ss_pred CCCCEEEEEcCcccHHHHH----HHhhCCCCeE--EEEeCCHHHHHHHHhhCCC----CCeEE--EEcCCCCCC------
Q 019684 109 NRNMLVVDVGGGTGFTTLG----IVKHVDAKNV--TILDQSPHQLAKAKQKEPL----KECKI--VEGDAEDLP------ 170 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~----l~~~~~~~~v--~gvD~s~~~~~~a~~~~~~----~~~~~--~~~d~~~~~------ 170 (337)
.++.+|||||||+|.++.. ++..+++.++ +|+|+|+.|++.|+++... .++.+ ..+++++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4678999999999976543 3444466754 9999999999999987421 34544 455554432
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh--------hccCCCHHHHHHHHH
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV--------WMLFPKEEEYIEWFQ 242 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~ 242 (337)
+++++||+|++..+++|++|+..++++++++|||||++++........+. ..+... +..+.+.+++.++|+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD-KLWKKYGSRFPQDDLCQYITSDDLTQMLD 209 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHH-HHHHHHGGGSCCCTTCCCCCHHHHHHHHH
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHH-HHHHHHHHhccCCCcccCCCHHHHHHHHH
Confidence 45788999999999999999999999999999999999997654432221 111111 224678999999999
Q ss_pred hCCCcEEEEEE
Q 019684 243 KAGFKDVQLKR 253 (337)
Q Consensus 243 ~aGF~~v~~~~ 253 (337)
++||+++....
T Consensus 210 ~aGf~~~~~~~ 220 (292)
T 2aot_A 210 NLGLKYECYDL 220 (292)
T ss_dssp HHTCCEEEEEE
T ss_pred HCCCceEEEEe
Confidence 99999876443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=165.10 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=121.0
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCcc
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYAD 177 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD 177 (337)
..++..+.. .++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.++++... .+++++++|+.++++++++||
T Consensus 83 ~~~l~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLPG-HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhcc-cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 334444433 367899999999999999998874 56899999999999999998654 568999999988888888999
Q ss_pred EEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 178 RYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 178 ~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+|++..+++|+++ ...+++++.++|||||++++.++......... .......+++.+++.++|+++||+++++....
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV-DKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE-ETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccccee-cccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 9999999999954 67999999999999999999875322110000 00011224589999999999999999987764
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=157.24 Aligned_cols=136 Identities=25% Similarity=0.344 Sum_probs=113.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||||||+|.++..++.. +|+|+|+.+++.++++ +++++.+|+.++++++++||+|++..+++|++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----GVFVLKGTAENLPLKDESFDFALMVTTICFVD 116 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----CCEEEEcccccCCCCCCCeeEEEEcchHhhcc
Confidence 3789999999999999887654 9999999999999986 68899999998888888999999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh-------hhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-------VWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++..+++++.++|+|||.+++..+............. ....+++.+++.++|+++||+++++....
T Consensus 117 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 117 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence 9999999999999999999998765543321111100 11235789999999999999999887663
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-20 Score=156.97 Aligned_cols=127 Identities=24% Similarity=0.277 Sum_probs=107.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++.+|||||||+|.++..+ +. +++|+|+|+.+++.++++. .++.++.+|+.++++++++||+|++..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA--PEATWVRAWGEALPFPGESFDVVLLFTTLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC--TTSEEECCCTTSCCSCSSCEEEEEEESCTTTC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC--CCcEEEEcccccCCCCCCcEEEEEEcChhhhc
Confidence 6789999999999998876 44 9999999999999999887 67899999999989888899999999999999
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhh--------hhhccCCCHHHHHHHHHhCC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA--------DVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~aG 245 (337)
+++..+++++.++|||||.+++..+.....+...... ..+..+++.+++.++|+ |
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 9999999999999999999999887655433211110 11235689999999999 7
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=161.01 Aligned_cols=156 Identities=22% Similarity=0.191 Sum_probs=122.5
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~ 172 (337)
....++..+.. .++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++.. ..+++++.+|+.+++
T Consensus 52 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 127 (287)
T 1kpg_A 52 KIDLALGKLGL-QPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 127 (287)
T ss_dssp HHHHHHTTTTC-CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHcCC-CCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--
Confidence 34445555554 378899999999999999999665 5699999999999999998743 247999999998765
Q ss_pred CCCccEEEeccccccc--CCHHHHHHHHHHhccCCCEEEEEcCCCCchhH---------------hhhhhhh---hccCC
Q 019684 173 TDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWL---------------SRYFADV---WMLFP 232 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~~~~~---~~~~~ 232 (337)
++||+|++..+++|+ +++..+++++.++|||||++++.++....... ..+.... ...++
T Consensus 128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 206 (287)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCC
Confidence 679999999999999 67889999999999999999998765433211 0011111 11346
Q ss_pred CHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 233 KEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 233 ~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
+.+++.++++++||+++++..++..
T Consensus 207 s~~~~~~~l~~aGf~~~~~~~~~~~ 231 (287)
T 1kpg_A 207 SIPMVQECASANGFTVTRVQSLQPH 231 (287)
T ss_dssp CHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CHHHHHHHHHhCCcEEEEEEeCcHh
Confidence 8999999999999999999887644
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-21 Score=182.89 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=119.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-eEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~d~~~~~~~~ 173 (337)
..+...++..... .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++..... ..+...+.+.+++++
T Consensus 93 ~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 93 AMLARDFLATELT-GPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHHHHTTTC-SSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCC
Confidence 3345555555554 37889999999999999999987 6799999999999999997622111 112233444556667
Q ss_pred CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh---hccCCCHHHHHHHHHhCCCcEEE
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV---WMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
++||+|++.++++|++|+..++++++++|||||++++..+..........+... +..+++.+++.++++++||++++
T Consensus 170 ~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~ 249 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVD 249 (416)
T ss_dssp CCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEE
Confidence 899999999999999999999999999999999999986653322221112221 22357899999999999999999
Q ss_pred EEEcC
Q 019684 251 LKRIG 255 (337)
Q Consensus 251 ~~~~~ 255 (337)
+..+.
T Consensus 250 ~~~~~ 254 (416)
T 4e2x_A 250 VQRLP 254 (416)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 98864
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-20 Score=157.80 Aligned_cols=140 Identities=11% Similarity=-0.003 Sum_probs=108.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------CCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++... .+++++.+|+...+..+++||+|++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 67899999999999999999987668999999999999999987532 2799999999877777789999999
Q ss_pred cccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhH-----hhhhhhhhccCCCHHHHH----HHHHhCCCcEE
Q 019684 182 AGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWL-----SRYFADVWMLFPKEEEYI----EWFQKAGFKDV 249 (337)
Q Consensus 182 ~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~~l~~aGF~~v 249 (337)
..+++|++++ ..+++++.++|||||.+++.......... .......+...++.+++. ++++++||+++
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~ 187 (217)
T 3jwh_A 109 IEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQ 187 (217)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEE
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEE
Confidence 9999999866 78999999999999977665431100000 001111122346888888 88999999764
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=157.32 Aligned_cols=138 Identities=18% Similarity=0.075 Sum_probs=114.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+++ ++++||+|++..++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFF 142 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESST
T ss_pred CCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhh
Confidence 3469999999999999999875 78999999999999999988654 35999999998876 44589999999999
Q ss_pred cccC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 186 EYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 186 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
+|++ +...+++++.++|||||++++.+....... .......+.+++.++|+++||+++++.....
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHV------GGPPYKVDVSTFEEVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC------SCSSCCCCHHHHHHHHGGGTEEEEEEEECTT
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC------CCCCccCCHHHHHHHHHHcCCeEEEEEecCC
Confidence 9998 788999999999999999998765433210 0011236889999999999999999988763
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=156.91 Aligned_cols=142 Identities=15% Similarity=0.053 Sum_probs=109.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------CCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++... .+++++.+|+...+..+++||+|++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 108 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV 108 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence 67899999999999999999987668999999999999999987542 1799999999888877889999999
Q ss_pred cccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch-----hHhhhhhhhhccCCCHHHHH----HHHHhCCCcEEE
Q 019684 182 AGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF-----WLSRYFADVWMLFPKEEEYI----EWFQKAGFKDVQ 250 (337)
Q Consensus 182 ~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~l~~aGF~~v~ 250 (337)
..+++|++++ ..+++++.++|||||.++......... .........+...++.+++. ++++++||++..
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 109 IEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRF 188 (219)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEE
Confidence 9999999866 689999999999999666543211100 00011111222346888888 889999996544
Q ss_pred E
Q 019684 251 L 251 (337)
Q Consensus 251 ~ 251 (337)
.
T Consensus 189 ~ 189 (219)
T 3jwg_A 189 L 189 (219)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-20 Score=164.94 Aligned_cols=145 Identities=19% Similarity=0.242 Sum_probs=112.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---------------------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------------------- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------------------- 156 (337)
++.+|||||||+|.++..+++.+++.+|+|+|+|+.+++.|+++...
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 57899999999999999999998889999999999999999987532
Q ss_pred ----------------------------CCeEEEEcCCCCCC-----CCCCCccEEEecccccccC------CHHHHHHH
Q 019684 157 ----------------------------KECKIVEGDAEDLP-----FPTDYADRYVSAGSIEYWP------DPQRGIRE 197 (337)
Q Consensus 157 ----------------------------~~~~~~~~d~~~~~-----~~~~~fD~i~~~~~l~~~~------~~~~~l~~ 197 (337)
.+++|+++|+...+ +.+++||+|++..+++|+. +..+++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999997544 5678899999999997774 56789999
Q ss_pred HHHhccCCCEEEEEcCCCCchhH-----hhhhhhhhccCCCHHHHHHHHHh--CCCcEEEEEEc
Q 019684 198 AYRVLKLGGKACIIGPVYPTFWL-----SRYFADVWMLFPKEEEYIEWFQK--AGFKDVQLKRI 254 (337)
Q Consensus 198 ~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~--aGF~~v~~~~~ 254 (337)
++++|+|||+|++.......... ...........+.++++.++|.+ +||+.+++...
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999997543221110 01111222233568899999999 99998887665
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-20 Score=159.51 Aligned_cols=139 Identities=16% Similarity=0.147 Sum_probs=111.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC---CCCC-CCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL---PFPT-DYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~---~~~~-~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++.+...|+.++ ++.. ++||+|++..++
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l 126 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA---GAGEVHLASYAQLAEAKVPVGKDYDLICANFAL 126 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT---CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh---cccccchhhHHhhcccccccCCCccEEEECchh
Confidence 5689999999999999999988 78999999999999999987 5677888888654 4433 459999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh--------h-------hhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY--------F-------ADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
+ ..++..+++++.++|||||++++.++.......... + ......+++.+++.++|+++||++++
T Consensus 127 ~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 127 L-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp C-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred h-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 9 889999999999999999999998764432211000 0 01112346899999999999999999
Q ss_pred EEEc
Q 019684 251 LKRI 254 (337)
Q Consensus 251 ~~~~ 254 (337)
+...
T Consensus 206 ~~~~ 209 (227)
T 3e8s_A 206 LQEP 209 (227)
T ss_dssp EECC
T ss_pred EecC
Confidence 8873
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=162.56 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=123.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~ 172 (337)
....++..+.. .++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++... .+++++.+|+.+++
T Consensus 78 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 153 (318)
T 2fk8_A 78 KVDLNLDKLDL-KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-- 153 (318)
T ss_dssp HHHHHHTTSCC-CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred HHHHHHHhcCC-CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--
Confidence 34455555554 378899999999999999999876 67999999999999999987432 46899999998765
Q ss_pred CCCccEEEeccccccc--CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh---------------hhhhhh---hccCC
Q 019684 173 TDYADRYVSAGSIEYW--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS---------------RYFADV---WMLFP 232 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------~~~~~~---~~~~~ 232 (337)
++||+|++..+++|+ +++..+++++.++|||||++++.++........ .+.... ...+.
T Consensus 154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 232 (318)
T ss_dssp -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCC
Confidence 679999999999999 577899999999999999999987765442211 111111 12346
Q ss_pred CHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 233 KEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 233 ~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
+.+++.++++++||+++++..++..
T Consensus 233 s~~~~~~~l~~aGf~~~~~~~~~~~ 257 (318)
T 2fk8_A 233 STEMMVEHGEKAGFTVPEPLSLRPH 257 (318)
T ss_dssp CHHHHHHHHHHTTCBCCCCEECHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEecchh
Confidence 8999999999999999998887643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-20 Score=151.62 Aligned_cols=134 Identities=22% Similarity=0.292 Sum_probs=114.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++ .+++++..+| .++++++||+|++..+++|++
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~--~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK--FDSVITLSDP---KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH--CTTSEEESSG---GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh--CCCcEEEeCC---CCCCCCceEEEEEccchhccc
Confidence 67899999999999999999984 4999999999999999988 3589999998 567788999999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
++..+++++.++|||||++++.+........ .......++.+++.++|+ ||++++.....+
T Consensus 90 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~ 150 (170)
T 3i9f_A 90 DKQHVISEVKRILKDDGRVIIIDWRKENTGI----GPPLSIRMDEKDYMGWFS--NFVVEKRFNPTP 150 (170)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSCCSS----SSCGGGCCCHHHHHHHTT--TEEEEEEECSST
T ss_pred CHHHHHHHHHHhcCCCCEEEEEEcCcccccc----CchHhhhcCHHHHHHHHh--CcEEEEccCCCC
Confidence 9999999999999999999998765432211 111234578999999999 999999988874
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=158.09 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=110.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--------------------CCCeEEEEcCCCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------------------LKECKIVEGDAEDL 169 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--------------------~~~~~~~~~d~~~~ 169 (337)
++.+|||+|||+|..+..|++. +.+|+|+|+|+.+++.|+++.. ..+++++++|+.++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 6789999999999999999998 7899999999999999987642 25799999999998
Q ss_pred CCCC-CCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 170 PFPT-DYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 170 ~~~~-~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
++.+ ++||+|++..+++|++. ...+++++.++|||||++++++........ .. .....+.+++.++++. +|
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~----~g-~~~~~~~~el~~~l~~-~f 219 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH----AG-PPFYVPSAELKRLFGT-KC 219 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC----CC-SSCCCCHHHHHHHHTT-TE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC----CC-CCCCCCHHHHHHHhhC-Ce
Confidence 8764 78999999999999864 357999999999999999765433221100 00 0112588999999987 59
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
+++......
T Consensus 220 ~v~~~~~~~ 228 (252)
T 2gb4_A 220 SMQCLEEVD 228 (252)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeccc
Confidence 988887654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=155.61 Aligned_cols=143 Identities=14% Similarity=-0.017 Sum_probs=115.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCC-----CCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT-----DYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~-----~~fD~i~~~~ 183 (337)
.++.+|||||||+|.++..+++.. .+|+|+|+|+.+++.++++....+++++++|+.+++... ..||+|++..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHS--SCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhC--CCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 478899999999999999999984 499999999999999999987678999999998765332 2499999999
Q ss_pred cccccC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhh-----------hhh-----ccCCCHHHHHHHHHhCC
Q 019684 184 SIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA-----------DVW-----MLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 184 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-----------~~~-----~~~~~~~~~~~~l~~aG 245 (337)
+++|++ +...+++++.++|||||++++.+............. ... ....+.+++.+++ +|
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aG 210 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PD 210 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TT
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CC
Confidence 999998 778999999999999999999877655322111100 000 1235889999999 99
Q ss_pred CcEEEEEEcC
Q 019684 246 FKDVQLKRIG 255 (337)
Q Consensus 246 F~~v~~~~~~ 255 (337)
|+++....+.
T Consensus 211 f~~~~~~~~~ 220 (245)
T 3ggd_A 211 FEILSQGEGL 220 (245)
T ss_dssp EEEEEEECCB
T ss_pred CEEEeccccc
Confidence 9999887664
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-20 Score=165.62 Aligned_cols=174 Identities=17% Similarity=0.190 Sum_probs=119.3
Q ss_pred Hhhhhh-HhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC
Q 019684 76 FYRFLS-IVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (337)
Q Consensus 76 ~y~~~~-~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 154 (337)
+|+... ..|+....... .......++..+.. ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.
T Consensus 50 ~y~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~--~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~ 124 (299)
T 3g2m_A 50 FYDEGAADTYRDLIQDAD-GTSEAREFATRTGP--VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRL 124 (299)
T ss_dssp CC--------------CC-CHHHHHHHHHHHCC--CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHhcccC-ccHHHHHHHHhhCC--CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHH
Confidence 444443 55555444221 23334444444432 4459999999999999999998 789999999999999999885
Q ss_pred CC------CCeEEEEcCCCCCCCCCCCccEEEec-ccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchh------
Q 019684 155 PL------KECKIVEGDAEDLPFPTDYADRYVSA-GSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFW------ 219 (337)
Q Consensus 155 ~~------~~~~~~~~d~~~~~~~~~~fD~i~~~-~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------ 219 (337)
.. .+++++++|+.++++ +++||+|++. .+++|+++ ...+++++.++|||||+|++..+......
T Consensus 125 ~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 203 (299)
T 3g2m_A 125 AEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLER 203 (299)
T ss_dssp HTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC
T ss_pred hhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhc
Confidence 44 569999999999887 6789999865 55666653 46899999999999999999865443210
Q ss_pred ---Hhh-------hh--------------------------hhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 220 ---LSR-------YF--------------------------ADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 220 ---~~~-------~~--------------------------~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
... .. ......+++.+++.++|+++||+++++..+.
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 204 KQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp -------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred cceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 000 00 0001124699999999999999999999876
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-19 Score=153.86 Aligned_cols=141 Identities=22% Similarity=0.275 Sum_probs=116.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC--CCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED--LPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~--~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .+++.+|+.+ .++++++||+|++..+++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL----DHVVLGDIETMDMPYEEEQFDCVIFGDVLE 104 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS----SEEEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC----CcEEEcchhhcCCCCCCCccCEEEECChhh
Confidence 36789999999999999999988 589999999999999999764 3788999976 567778999999999999
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhH-hhhhh------------hhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFA------------DVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
|++++..+++++.++|+|||.+++..+....... ..... ..+..+++.+++.++|+++||+++++..
T Consensus 105 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 184 (230)
T 3cc8_A 105 HLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184 (230)
T ss_dssp GSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence 9999999999999999999999998765443211 11111 1112457899999999999999999888
Q ss_pred cC
Q 019684 254 IG 255 (337)
Q Consensus 254 ~~ 255 (337)
+.
T Consensus 185 ~~ 186 (230)
T 3cc8_A 185 VY 186 (230)
T ss_dssp EE
T ss_pred cc
Confidence 65
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=159.86 Aligned_cols=151 Identities=22% Similarity=0.180 Sum_probs=120.0
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCc
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f 176 (337)
++...+. .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. ..+++++.+|+.+ +++. +|
T Consensus 161 ~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~-~~ 236 (332)
T 3i53_A 161 IAAKYDW-AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPA-GA 236 (332)
T ss_dssp GGGSSCC-GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCC-SC
T ss_pred HHHhCCC-CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCC-CC
Confidence 3444443 2568999999999999999999999999999999 999999997632 3679999999963 4444 79
Q ss_pred cEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch----hHhhh-hhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 177 DRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF----WLSRY-FADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 177 D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
|+|++.+++||++++ .+++++++++|+|||++++.+...+.. ..... +.......++.+++.++|+++||+++
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE
Confidence 999999999999986 689999999999999999988765432 11111 11112245789999999999999999
Q ss_pred EEEEcC
Q 019684 250 QLKRIG 255 (337)
Q Consensus 250 ~~~~~~ 255 (337)
++....
T Consensus 317 ~~~~~~ 322 (332)
T 3i53_A 317 AAHPIS 322 (332)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998775
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=160.54 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=98.0
Q ss_pred hhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC
Q 019684 77 YRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 156 (337)
Q Consensus 77 y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 156 (337)
|+..++.|+.. .|. +...+.+.+....+ .+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++
T Consensus 11 F~~~a~~Y~~~-Rp~-yp~~l~~~l~~~~~---~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~~--- 80 (257)
T 4hg2_A 11 FTPVADAYRAF-RPR-YPRALFRWLGEVAP---ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALRH--- 80 (257)
T ss_dssp ---------CC-CCC-CCHHHHHHHHHHSS---CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCCC---
T ss_pred HHHHHHHHHHH-CCC-cHHHHHHHHHHhcC---CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhhc---
Confidence 34445556543 222 33445555544432 5679999999999999999988 67999999999999888643
Q ss_pred CCeEEEEcCCCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 157 KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 157 ~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+++.++++|++++++++++||+|++..++||+ ++.++++++.|+|||||+|++.....
T Consensus 81 ~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 81 PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp TTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCceeehhhhhhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 68999999999999999999999999999766 68899999999999999999876543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-20 Score=159.99 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEe-cccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS-AGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~-~~~l~~ 187 (337)
.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .+++++.+|+.++++ +++||+|++ ..+++|
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~--~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~ 113 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKE--FGDTAGLELSEDMLTHARKRL--PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGY 113 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH--HSEEEEEESCHHHHHHHHHHC--TTCEEEECCTTTCCC-SSCEEEEEECTTGGGG
T ss_pred CCCCeEEEecccCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhC--CCCEEEECCHHHccc-CCCCcEEEEcCchHhh
Confidence 36789999999999999999998 349999999999999999886 468999999988776 678999995 559999
Q ss_pred cCC---HHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 188 WPD---PQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 188 ~~~---~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+++ ...+++++.++|||||++++.+...
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 114 LKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp CCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 965 3589999999999999999986543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=160.04 Aligned_cols=154 Identities=11% Similarity=0.046 Sum_probs=118.4
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHH------HHHHHHhhCCC----CCeEEEEcC---
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPH------QLAKAKQKEPL----KECKIVEGD--- 165 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~------~~~~a~~~~~~----~~~~~~~~d--- 165 (337)
.++..+.. .++.+|||||||+|.++..+++.. |..+|+|+|+|+. +++.++++... .+++++.+|
T Consensus 34 ~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQV-KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHTC-CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 33444444 378899999999999999999985 5589999999997 89999887432 469999998
Q ss_pred CCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch---hHhh----hhh-----------hh
Q 019684 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF---WLSR----YFA-----------DV 227 (337)
Q Consensus 166 ~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~----~~~-----------~~ 227 (337)
...+++++++||+|++..+++|++++..+++.+.++++|||++++.+...... .... ... ..
T Consensus 113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVAN 192 (275)
T ss_dssp TCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCS
T ss_pred hccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccc
Confidence 45566778899999999999999999888888888888899999986544311 1000 000 01
Q ss_pred hccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 228 WMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 228 ~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
...+++.+++.++|+++||++++...+
T Consensus 193 ~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 193 IRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 113678999999999999999888766
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=152.38 Aligned_cols=147 Identities=20% Similarity=0.110 Sum_probs=113.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .++.++.+|+.++++++++||+|++.....+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 106 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLP 106 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCC
Confidence 55 9999999999999999987 67999999999999999987432 3789999999888888889999999543222
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
..+...+++++.++|||||.+++..+.................+++.+++.++|+ ||+++++.........+
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g 178 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEG 178 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCC
Confidence 2356789999999999999999987654433211111111234689999999999 99999988876443333
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=161.27 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=107.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCCC------------------------------
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLK------------------------------ 157 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~------------------------------ 157 (337)
.++.+|||||||+|.++..++.. + .+|+|+|+|+.|++.|++++...
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 36789999999999887766655 4 47999999999999998753211
Q ss_pred --CeE-EEEcCCCC-CCC---CCCCccEEEeccccccc-C---CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh
Q 019684 158 --ECK-IVEGDAED-LPF---PTDYADRYVSAGSIEYW-P---DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226 (337)
Q Consensus 158 --~~~-~~~~d~~~-~~~---~~~~fD~i~~~~~l~~~-~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 226 (337)
++. ++++|+.+ .|+ ..++||+|++..++||+ + +...++++++++|||||+|++.+.......... ...
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g-~~~ 210 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG-KRE 210 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET-TEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeC-CeE
Confidence 133 88999976 343 25689999999999986 3 446899999999999999999864432211000 001
Q ss_pred hhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 227 VWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 227 ~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.....++.+++.++|+++||++++......
T Consensus 211 ~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~ 240 (263)
T 2a14_A 211 FSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 240 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEECC
T ss_pred eeccccCHHHHHHHHHHCCCEEEEEeeccc
Confidence 112346899999999999999999987653
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=160.99 Aligned_cols=152 Identities=20% Similarity=0.283 Sum_probs=120.5
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCC
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTD 174 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~ 174 (337)
..++...+. .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. ..+++++.+|+. .+++.
T Consensus 192 ~~l~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~- 267 (369)
T 3gwz_A 192 GQVAAAYDF-SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD- 267 (369)
T ss_dssp HHHHHHSCC-TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-
T ss_pred HHHHHhCCC-ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-
Confidence 334444444 3678999999999999999999999999999999 999999997632 357999999997 35555
Q ss_pred CccEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCch--hHhhh-----hhhhhccCCCHHHHHHHHHhCC
Q 019684 175 YADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTF--WLSRY-----FADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~l~~aG 245 (337)
.||+|++.+++|++++.. +++++++++|+|||++++.+...+.. ..... +.......++.++|.++|+++|
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 347 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSG 347 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTT
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCC
Confidence 799999999999999876 79999999999999999987654431 11111 1111123578999999999999
Q ss_pred CcEEEEEEc
Q 019684 246 FKDVQLKRI 254 (337)
Q Consensus 246 F~~v~~~~~ 254 (337)
|+++++...
T Consensus 348 f~~~~~~~~ 356 (369)
T 3gwz_A 348 LRVERSLPC 356 (369)
T ss_dssp EEEEEEEEC
T ss_pred CeEEEEEEC
Confidence 999999874
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-19 Score=158.93 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=114.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-------------------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE------------------------------- 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------------------------- 158 (337)
++.+|||||||+|.++..++...+ .+|+|+|+|+.+++.++++....+
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 678999999999999998887732 499999999999999998765433
Q ss_pred -e-EEEEcCCCCCC-CCC---CCccEEEeccccc----ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhh
Q 019684 159 -C-KIVEGDAEDLP-FPT---DYADRYVSAGSIE----YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228 (337)
Q Consensus 159 -~-~~~~~d~~~~~-~~~---~~fD~i~~~~~l~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 228 (337)
+ .++.+|+.+.+ +.+ ++||+|++..+++ +.+++..+++++.++|||||++++.+......... ......
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~-~~~~~~ 213 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMI-GEQKFS 213 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE-TTEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEc-CCcccc
Confidence 7 89999997753 345 7899999999999 55567899999999999999999987543321100 000112
Q ss_pred ccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 229 ~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
....+.+++.++|+++||+++++......
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 242 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEVISQN 242 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEEeccc
Confidence 23568899999999999999999887643
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=159.78 Aligned_cols=146 Identities=20% Similarity=0.295 Sum_probs=114.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhC-----CCCCeEEEEcCCCCCCCCC------CCc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE-----PLKECKIVEGDAEDLPFPT------DYA 176 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~------~~f 176 (337)
.++.+|||||||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++. ...+++++++|++++++.+ ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 378999999999999999999875 7899999999999999999873 2368999999999988776 789
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC---CCc-hhHhhhhhhhh------c-cC--CCHHHHHHHHHh
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV---YPT-FWLSRYFADVW------M-LF--PKEEEYIEWFQK 243 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~---~~~-~~~~~~~~~~~------~-~~--~~~~~~~~~l~~ 243 (337)
|+|++..+++|+ ++..+++++.++|||||.+++.+.. ... ......+...+ . .+ ...+.+.+++++
T Consensus 115 D~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~ 193 (299)
T 3g5t_A 115 DMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKD 193 (299)
T ss_dssp EEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTT
T ss_pred eEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhchhhHHHHHhhhc
Confidence 999999999999 9999999999999999999884321 111 11111211111 1 12 356678899999
Q ss_pred CCC-----cEEEEEEcC
Q 019684 244 AGF-----KDVQLKRIG 255 (337)
Q Consensus 244 aGF-----~~v~~~~~~ 255 (337)
+|| ++++...+.
T Consensus 194 ~gfp~~~f~~v~~~~~~ 210 (299)
T 3g5t_A 194 SHLDPELFHDIQVSYFC 210 (299)
T ss_dssp CCCCTTTEEEEEEEEEC
T ss_pred cCCChHHcCcceEEEec
Confidence 999 666666654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-19 Score=162.86 Aligned_cols=117 Identities=22% Similarity=0.213 Sum_probs=97.5
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----C---CCCeEEEEcCC
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----P---LKECKIVEGDA 166 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~---~~~~~~~~~d~ 166 (337)
.+.+...+...+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++. . ..++.+..+|+
T Consensus 42 ~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~ 118 (293)
T 3thr_A 42 TAEYKAWLLGLLRQH-GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118 (293)
T ss_dssp CHHHHHHHHHHHHHT-TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred HHHHHHHHHHHhccc-CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence 344555554444432 6789999999999999999998 679999999999999998763 1 13578899999
Q ss_pred CCCC---CCCCCccEEEec-ccccccCC-------HHHHHHHHHHhccCCCEEEEEcC
Q 019684 167 EDLP---FPTDYADRYVSA-GSIEYWPD-------PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 167 ~~~~---~~~~~fD~i~~~-~~l~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+++ +.+++||+|++. ++++|+++ ...++++++++|||||++++..+
T Consensus 119 ~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 119 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp GGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8877 778899999998 89999999 88999999999999999998754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-19 Score=155.42 Aligned_cols=171 Identities=25% Similarity=0.302 Sum_probs=122.5
Q ss_pred HhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 76 ~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
.|+..+..|+....... ...+...+.... +++.+|||+|||+|.++..+++. .+++|+|+|+.+++.++++..
T Consensus 3 ~y~~~a~~yd~~~~~~~-~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~ 75 (243)
T 3d2l_A 3 AYEQFAYVYDELMQDVP-YPEWVAWVLEQV---EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAM 75 (243)
T ss_dssp ---CTTHHHHHHTTTCC-HHHHHHHHHHHS---CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccc-HHHHHHHHHHHc---CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhh
Confidence 35566666766554332 334444444443 35689999999999999998876 699999999999999998743
Q ss_pred --CCCeEEEEcCCCCCCCCCCCccEEEecc-cccccC---CHHHHHHHHHHhccCCCEEEEEcCCCCchh----------
Q 019684 156 --LKECKIVEGDAEDLPFPTDYADRYVSAG-SIEYWP---DPQRGIREAYRVLKLGGKACIIGPVYPTFW---------- 219 (337)
Q Consensus 156 --~~~~~~~~~d~~~~~~~~~~fD~i~~~~-~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------- 219 (337)
..+++++.+|+.+++++ ++||+|++.. +++|+. +...+++++.++|||||++++..+......
T Consensus 76 ~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~ 154 (243)
T 3d2l_A 76 ETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYAT 154 (243)
T ss_dssp HTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEE
T ss_pred hcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeE
Confidence 24689999999887765 6799999986 999984 446799999999999999998532210000
Q ss_pred --------Hhh--------------hh----h--------hhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 220 --------LSR--------------YF----A--------DVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 220 --------~~~--------------~~----~--------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
... .+ . .....+++.+++.++|+++||+++++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 223 (243)
T 3d2l_A 155 HAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGD 223 (243)
T ss_dssp ECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEET
T ss_pred ECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecC
Confidence 000 00 0 01123579999999999999999888653
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=7.3e-19 Score=158.68 Aligned_cols=144 Identities=21% Similarity=0.218 Sum_probs=107.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--------------------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------------------------------- 157 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------------------- 157 (337)
++.+|||||||+|..+..++.. ++.+|+|+|+|+.|++.|+++....
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 6789999999999965444443 4679999999999999988753311
Q ss_pred -CeEEEEcCCCC-CCC-----CCCCccEEEecccccc----cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh
Q 019684 158 -ECKIVEGDAED-LPF-----PTDYADRYVSAGSIEY----WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226 (337)
Q Consensus 158 -~~~~~~~d~~~-~~~-----~~~~fD~i~~~~~l~~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 226 (337)
.+.++.+|+.+ +|+ ++++||+|++..+++| ++++..+++++.++|||||+|++........... ....
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~-~~~~ 228 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA-GEAR 228 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE-TTEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEc-CCee
Confidence 14577779976 553 3466999999999999 5677899999999999999999975322211100 0001
Q ss_pred hhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 227 VWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 227 ~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....+++.+++.++|+++||+++++....
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 11245789999999999999999988765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-19 Score=159.43 Aligned_cols=147 Identities=17% Similarity=0.105 Sum_probs=116.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCC-CCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF-PTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~-~~~~fD~i~~~~ 183 (337)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++... .++.++++|+.++++ .+++||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 47889999999999999998887 456999999999999999987543 358999999988887 578899999999
Q ss_pred cccc----cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh---------------------h-------------hhh
Q 019684 184 SIEY----WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS---------------------R-------------YFA 225 (337)
Q Consensus 184 ~l~~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------------~-------------~~~ 225 (337)
+++| ..+...+++++.++|||||++++..+........ . ...
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9977 3556789999999999999999987553211100 0 000
Q ss_pred hhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.....+++.+++.++|+++||++++...+..
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~ 252 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKGFID 252 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEHHH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecCHHH
Confidence 0112457899999999999999999988764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=162.15 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=115.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCC--CCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL--PFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~--~~~~~~fD~i~~~~ 183 (337)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++... .+++++.+|+.+. |++ ++||+|++.+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 568999999999999999999999999999999 9999999987542 4699999999775 455 6799999999
Q ss_pred cccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhHhh-----hhhh--------hhccCCCHHHHHHHHHhCCCcE
Q 019684 184 SIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSR-----YFAD--------VWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 184 ~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----~~~~--------~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
++|++++.+ +++++++++|||||++++.+...+...... .... .....++.+++.++|+++||++
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~ 336 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEV 336 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence 999998764 789999999999999999876544321100 0000 0112468999999999999998
Q ss_pred EEEEEcC
Q 019684 249 VQLKRIG 255 (337)
Q Consensus 249 v~~~~~~ 255 (337)
+++....
T Consensus 337 v~~~~~~ 343 (363)
T 3dp7_A 337 EEIQDNI 343 (363)
T ss_dssp SCCCCCB
T ss_pred EEEEeCC
Confidence 8876543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=154.75 Aligned_cols=151 Identities=28% Similarity=0.417 Sum_probs=120.3
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCc
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~f 176 (337)
.++...++. +..+|||||||+|.++..+++.+|+.+++..|. |.+++.++++... .+++++.+|+.+.+.+ .+
T Consensus 170 ~~~~~~~~~-~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~ 245 (353)
T 4a6d_A 170 SVLTAFDLS-VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EA 245 (353)
T ss_dssp HHHHSSCGG-GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CC
T ss_pred HHHHhcCcc-cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--Cc
Confidence 344444443 668999999999999999999999999999998 8899999987543 6799999999765544 47
Q ss_pred cEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCch----hHhhhhhhhhc------cCCCHHHHHHHHHhC
Q 019684 177 DRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTF----WLSRYFADVWM------LFPKEEEYIEWFQKA 244 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~l~~a 244 (337)
|+|++.+++|+++|.+ ++|+++++.|+|||+++|.+...+.. .....+ +..+ .-+|.++|.++|+++
T Consensus 246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~-dl~ml~~~~g~ert~~e~~~ll~~A 324 (353)
T 4a6d_A 246 DLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLY-SLNMLVQTEGQERTPTHYHMLLSSA 324 (353)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHH-HHHHHHSSSCCCCCHHHHHHHHHHH
T ss_pred eEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHH-HHHHHHhCCCcCCCHHHHHHHHHHC
Confidence 9999999999999874 78999999999999999988654321 111111 1111 236899999999999
Q ss_pred CCcEEEEEEcC
Q 019684 245 GFKDVQLKRIG 255 (337)
Q Consensus 245 GF~~v~~~~~~ 255 (337)
||+++++...+
T Consensus 325 Gf~~v~v~~~~ 335 (353)
T 4a6d_A 325 GFRDFQFKKTG 335 (353)
T ss_dssp TCEEEEEECCS
T ss_pred CCceEEEEEcC
Confidence 99999998765
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-19 Score=148.65 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=110.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. ..+++++.+|+.++++ +++||+|++..+++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGG
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhh
Confidence 5679999999999999999988 7799999999999999987642 2369999999988877 77899999999999
Q ss_pred ccC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 187 YWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 187 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
|++ +...+++++.++|||||++++.+......... .......++.+++.+++++ |++++....
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---TVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---CSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC---CCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 997 77899999999999999988865433221100 0111234588999999986 999888655
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=157.89 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=117.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..+++.+|+.+++++|+| .+++.++++.. ..+++++.+|+.+.+++++ ||+|++.+++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l 242 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFL 242 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchh
Confidence 6789999999999999999999999999999999 99999987642 2469999999987666655 9999999999
Q ss_pred cccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch----hHhhhhh---hh---hccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 186 EYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF----WLSRYFA---DV---WMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 186 ~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~---~~---~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
+|+++. .++++++.++|+|||++++.+...+.. .....+. .. ....++.+++.++|+++||+++++..
T Consensus 243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~ 322 (335)
T 2r3s_A 243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS 322 (335)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEE
Confidence 999665 689999999999999999987655421 1111111 00 22457899999999999999999877
Q ss_pred cC
Q 019684 254 IG 255 (337)
Q Consensus 254 ~~ 255 (337)
+.
T Consensus 323 ~~ 324 (335)
T 2r3s_A 323 LP 324 (335)
T ss_dssp CT
T ss_pred CC
Confidence 65
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.7e-19 Score=151.73 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=111.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEeccc--c
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGS--I 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~~--l 185 (337)
++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++..+ +
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 57899999999999999999884 499999999999999997742 25789999999888887889999999999 5
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh-----hhhhhhhc---------------------------cCCC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-----RYFADVWM---------------------------LFPK 233 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----~~~~~~~~---------------------------~~~~ 233 (337)
++.++...+++++.++|+|||++++.++........ ......+. ....
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 195 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence 555677899999999999999999986542211100 00000000 0111
Q ss_pred HHHHHHHHHhCCCcEEEEEEcCc
Q 019684 234 EEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 234 ~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.++.++|+++||+.+++..++.
T Consensus 196 -~~~~~~l~~~GF~~v~~~~~~~ 217 (227)
T 1ve3_A 196 -KTGVELLAKLYFTKEAEEKVGN 217 (227)
T ss_dssp -HHHHHHHHTTTEEEEEEEEETT
T ss_pred -hHHHHHHHHHhhhHHHHHHhCC
Confidence 4789999999999999998873
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=157.57 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=117.2
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCC-CCCC
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP-FPTD 174 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~-~~~~ 174 (337)
.++...+..+.+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. ..+++++.+|+.+.+ +..+
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence 3444455443378999999999999999999999999999999 889998887632 246999999997755 2345
Q ss_pred CccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch----hHhhhhh------hhhccCCCHHHHHHHHH
Q 019684 175 YADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF----WLSRYFA------DVWMLFPKEEEYIEWFQ 242 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~l~ 242 (337)
.||+|++.+++||+++. ..++++++++|+|||++++.+...+.. .....+. ......++.+++.++|+
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 327 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVR 327 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHH
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHH
Confidence 69999999999999876 689999999999999999987544321 1111111 00123578999999999
Q ss_pred hCCCcEEEE
Q 019684 243 KAGFKDVQL 251 (337)
Q Consensus 243 ~aGF~~v~~ 251 (337)
++||++++.
T Consensus 328 ~aGf~~~~~ 336 (352)
T 3mcz_A 328 DAGLAVGER 336 (352)
T ss_dssp HTTCEEEEE
T ss_pred HCCCceeee
Confidence 999999884
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=155.16 Aligned_cols=138 Identities=29% Similarity=0.419 Sum_probs=108.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW- 188 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~- 188 (337)
++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++.. .+ ++.+|+.++++++++||+|++..++.|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~-~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-KN--VVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-SC--EEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC-CC--EEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 6789999999999999999987 6799999999999999998865 22 8899999988888899999998877666
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh-----------hhhhhh-----------hccCCCHHHHHHHHHhCCC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS-----------RYFADV-----------WMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~-----------~~~~~~~~~~~~~l~~aGF 246 (337)
+++..+++++.++|||||.+++..+........ ...... ...+++.+++.++ +||
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---aGf 205 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---EGF 205 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---TTE
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---cCc
Confidence 788999999999999999999986543211100 000000 0125677777777 899
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
+++++..+.
T Consensus 206 ~~~~~~~~~ 214 (260)
T 2avn_A 206 ETVDIRGIG 214 (260)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEECCC
Confidence 988887664
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-18 Score=156.83 Aligned_cols=150 Identities=22% Similarity=0.232 Sum_probs=117.4
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccE
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR 178 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 178 (337)
..++...+...+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ .+++++.+|+.+ +++++ |+
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~p~~--D~ 264 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF---SGVEHLGGDMFD-GVPKG--DA 264 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CCCCC--SE
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc---CCCEEEecCCCC-CCCCC--CE
Confidence 34455444224678999999999999999999999999999999 8888877643 679999999976 66654 99
Q ss_pred EEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchh-------Hhhhhh---h---hhccCCCHHHHHHHHHh
Q 019684 179 YVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFW-------LSRYFA---D---VWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 179 i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~-------~~~~~~---~---~~~~~~~~~~~~~~l~~ 243 (337)
|++.+++||+++.+ +++++++++|||||++++.+...+... ...... . .....++.++|.++|++
T Consensus 265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~ 344 (368)
T 3reo_A 265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMA 344 (368)
T ss_dssp EEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHH
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHH
Confidence 99999999998765 789999999999999999876543210 001111 0 01234689999999999
Q ss_pred CCCcEEEEEEcC
Q 019684 244 AGFKDVQLKRIG 255 (337)
Q Consensus 244 aGF~~v~~~~~~ 255 (337)
+||+++++....
T Consensus 345 AGF~~v~~~~~~ 356 (368)
T 3reo_A 345 SGFRGFKVASCA 356 (368)
T ss_dssp TTCCEEEEEEEE
T ss_pred CCCeeeEEEEeC
Confidence 999999998775
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=154.33 Aligned_cols=153 Identities=19% Similarity=0.239 Sum_probs=120.5
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCC
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~ 173 (337)
...++...++. + .+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. ..+++++.+|+.+ +++
T Consensus 157 ~~~~~~~~~~~-~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 157 FHEIPRLLDFR-G-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp HHHHHHHSCCT-T-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred HHHHHHhCCCC-C-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence 34444444443 4 8999999999999999999999999999999 999999998753 2579999999976 554
Q ss_pred CCccEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCc---hhHhhhhh-----hhhccCCCHHHHHHHHHh
Q 019684 174 DYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPT---FWLSRYFA-----DVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~l~~ 243 (337)
++||+|++.+++||+++.. +++++++++|+|||++++.+...+. ......+. ......++.+++.++|++
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 311 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGR 311 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHH
Confidence 5699999999999998876 8999999999999999998765332 11111111 011234689999999999
Q ss_pred CCCcEEEEEEcC
Q 019684 244 AGFKDVQLKRIG 255 (337)
Q Consensus 244 aGF~~v~~~~~~ 255 (337)
+||+++++....
T Consensus 312 aGf~~~~~~~~~ 323 (334)
T 2ip2_A 312 GGFAVERIVDLP 323 (334)
T ss_dssp TTEEEEEEEEET
T ss_pred CCCceeEEEECC
Confidence 999999988764
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=154.72 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=129.0
Q ss_pred hhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHH
Q 019684 68 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL 147 (337)
Q Consensus 68 ~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~ 147 (337)
++..+...||+....+....+.+++.++.+.+.++.... .++.+|||+|||+|.++..++...|+.+|+|+|+|+.++
T Consensus 69 ~~i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l 146 (276)
T 2b3t_A 69 AHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV 146 (276)
T ss_dssp HHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH
T ss_pred hHeeeeeEECCceEEeCCCCcccCchHHHHHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 333444455655555556677788888888888877665 367899999999999999999888889999999999999
Q ss_pred HHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEec-------------ccccccC------------CHHHHHHHHH
Q 019684 148 AKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSA-------------GSIEYWP------------DPQRGIREAY 199 (337)
Q Consensus 148 ~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~-------------~~l~~~~------------~~~~~l~~~~ 199 (337)
+.++++.. ..+++++++|+.+ ++++++||+|+++ .+++|.+ +...+++++.
T Consensus 147 ~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~ 225 (276)
T 2b3t_A 147 SLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSR 225 (276)
T ss_dssp HHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHG
T ss_pred HHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHH
Confidence 99998742 2469999999976 3445689999997 3444443 3467899999
Q ss_pred HhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 200 RVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 200 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
++|+|||++++... +.+.+++.++++++||+.+++..
T Consensus 226 ~~LkpgG~l~~~~~-----------------~~~~~~~~~~l~~~Gf~~v~~~~ 262 (276)
T 2b3t_A 226 NALVSGGFLLLEHG-----------------WQQGEAVRQAFILAGYHDVETCR 262 (276)
T ss_dssp GGEEEEEEEEEECC-----------------SSCHHHHHHHHHHTTCTTCCEEE
T ss_pred HhcCCCCEEEEEEC-----------------chHHHHHHHHHHHCCCcEEEEEe
Confidence 99999999998743 23567899999999998766543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-18 Score=157.17 Aligned_cols=145 Identities=21% Similarity=0.279 Sum_probs=115.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. ..+++++.+|+.+ +++.+ ||+|++.++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~v 257 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLSFV 257 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEecc
Confidence 3678999999999999999999998899999999 999999997642 2479999999965 34443 999999999
Q ss_pred ccccCCHH--HHHHHHHHhccCCCEEEEEcC--CCCch---hHhhhhhh-----hhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 185 IEYWPDPQ--RGIREAYRVLKLGGKACIIGP--VYPTF---WLSRYFAD-----VWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 185 l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~--~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+||+++.. .+++++.++|||||++++.+. ..+.. ........ .....++.+++.++|+++||+++++.
T Consensus 258 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 337 (374)
T 1qzz_A 258 LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER 337 (374)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 99998875 899999999999999999887 43221 11111111 11235799999999999999999998
Q ss_pred EcCc
Q 019684 253 RIGP 256 (337)
Q Consensus 253 ~~~~ 256 (337)
..+.
T Consensus 338 ~~~~ 341 (374)
T 1qzz_A 338 TSGS 341 (374)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8763
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-18 Score=156.45 Aligned_cols=149 Identities=25% Similarity=0.290 Sum_probs=116.4
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEE
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i 179 (337)
.++...+...+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.+ +++++ |+|
T Consensus 191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~v 263 (364)
T 3p9c_A 191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF---PGVTHVGGDMFK-EVPSG--DTI 263 (364)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CCCCC--SEE
T ss_pred HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc---CCeEEEeCCcCC-CCCCC--CEE
Confidence 3444443124678999999999999999999999999999999 8888777643 689999999977 66654 999
Q ss_pred EecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCch------hHhhhhhhh-------hccCCCHHHHHHHHHhC
Q 019684 180 VSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTF------WLSRYFADV-------WMLFPKEEEYIEWFQKA 244 (337)
Q Consensus 180 ~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~l~~a 244 (337)
++.+++|++++.+ +++++++++|||||++++.+...+.. .......+. .-..++.++|.++|+++
T Consensus 264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~A 343 (364)
T 3p9c_A 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGA 343 (364)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHT
T ss_pred EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHC
Confidence 9999999997764 79999999999999999987654321 000011111 11346899999999999
Q ss_pred CCcEEEEEEcC
Q 019684 245 GFKDVQLKRIG 255 (337)
Q Consensus 245 GF~~v~~~~~~ 255 (337)
||+++++..+.
T Consensus 344 GF~~v~~~~~~ 354 (364)
T 3p9c_A 344 GFTGVKSTYIY 354 (364)
T ss_dssp TCCEEEEEEEE
T ss_pred CCceEEEEEcC
Confidence 99999998775
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=139.91 Aligned_cols=128 Identities=22% Similarity=0.180 Sum_probs=110.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEec-ccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSA-GSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~-~~l~~ 187 (337)
+++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ++.++.+|+.++++++++||+|++. .+++|
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~--~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP--EARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT--TSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC--CCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 37789999999999999999988 6799999999999999998874 6899999998888777889999998 78888
Q ss_pred cCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 188 WPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 188 ~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
+++ ...+++++.++|+|||.+++..+... .++.+++.++++++||++++....
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~--------------~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFGAGR--------------GWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEETTS--------------SCCHHHHHHHHHHHTEEEEEEESS
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeCCCC--------------CcCHHHHHHHHHHcCCEEeeeecc
Confidence 843 46899999999999999998764432 247889999999999998877654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=155.47 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=119.1
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCCCCCCCCCCC
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~ 175 (337)
.++...+. .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++. ...+++++.+|+.+.++++
T Consensus 181 ~l~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-- 256 (359)
T 1x19_A 181 LLLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-- 256 (359)
T ss_dssp HHHHHCCC-TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC--
T ss_pred HHHHhcCC-CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC--
Confidence 33444444 3678999999999999999999999999999999 99999999763 2245999999998776654
Q ss_pred ccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCch---hHhhhh---hhh-----hccCCCHHHHHHHHH
Q 019684 176 ADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF---WLSRYF---ADV-----WMLFPKEEEYIEWFQ 242 (337)
Q Consensus 176 fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~---~~~-----~~~~~~~~~~~~~l~ 242 (337)
+|+|++.++++|+++ ..++++++.++|||||++++.+...+.. .....+ ... ...+++.+++.++|+
T Consensus 257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~ 336 (359)
T 1x19_A 257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE 336 (359)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHH
T ss_pred CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHH
Confidence 499999999999988 6789999999999999999887544321 111111 000 012378999999999
Q ss_pred hCCCcEEEEEEcC
Q 019684 243 KAGFKDVQLKRIG 255 (337)
Q Consensus 243 ~aGF~~v~~~~~~ 255 (337)
++||+++++..+.
T Consensus 337 ~aGf~~v~~~~~~ 349 (359)
T 1x19_A 337 SLGYKDVTMVRKY 349 (359)
T ss_dssp HHTCEEEEEEEET
T ss_pred HCCCceEEEEecC
Confidence 9999999988765
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-19 Score=150.88 Aligned_cols=145 Identities=26% Similarity=0.246 Sum_probs=112.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+|||+|||+|.++..++.. ++.+|+|+|+|+.+++.++++.. ..+++++++|+.++++++++||+|++..+++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 36789999999999985444443 37899999999999999987642 2568899999999888888999999999999
Q ss_pred cc--CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh-------h------hhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 187 YW--PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-------Y------FADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 187 ~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
|+ .+...+++++.++|||||++++.+.......... . ....+..+++.+++.++++++||...+.
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~ 180 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKED 180 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeee
Confidence 99 5677899999999999999999865443221100 0 0011224678999999999999987766
Q ss_pred EEc
Q 019684 252 KRI 254 (337)
Q Consensus 252 ~~~ 254 (337)
...
T Consensus 181 ~~~ 183 (209)
T 2p8j_A 181 RVV 183 (209)
T ss_dssp EEE
T ss_pred eee
Confidence 543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-18 Score=145.23 Aligned_cols=132 Identities=20% Similarity=0.260 Sum_probs=105.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+++ ++++||+|++..+++|
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 36789999999999999999988 57999999999999999998654 47999999998877 5788999999999999
Q ss_pred cCCH---HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 188 WPDP---QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 188 ~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
++++ ..+++++.++|||||.+++..+.... ...|......+.+..++.+. +..++.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~e~ 185 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDAT-------CRRWGHVAGAETVITILTEA-LTEVER 185 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH-------HHHTTCSCCHHHHHHHHHHH-SEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCc-------chhhhhhhhHHHHHHHHHhh-ccceEE
Confidence 9987 46799999999999999997654221 11222234556666666543 554443
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=153.40 Aligned_cols=147 Identities=24% Similarity=0.275 Sum_probs=112.0
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCc
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f 176 (337)
++...++ +++.+|||||||+|.++..+++.+|+.+++++|+ +.++. +++.. ..+++++.+|+.+ +.+ +|
T Consensus 176 ~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p--~~ 248 (348)
T 3lst_A 176 LARAGDF-PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP--HA 248 (348)
T ss_dssp HHHHSCC-CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC--CC
T ss_pred HHHhCCc-cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCC--CC
Confidence 3444444 3678999999999999999999999999999999 45554 33222 2569999999962 344 79
Q ss_pred cEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCch---hHhhhhh-----hhhccCCCHHHHHHHHHhCCC
Q 019684 177 DRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTF---WLSRYFA-----DVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 177 D~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~l~~aGF 246 (337)
|+|++.+++||+++. .+++++++++|||||++++.+...+.. ....... ......++.+++.++|+++||
T Consensus 249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 328 (348)
T 3lst_A 249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGL 328 (348)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTE
T ss_pred cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCC
Confidence 999999999999988 589999999999999999987644321 1111111 111235789999999999999
Q ss_pred cEEEEEEc
Q 019684 247 KDVQLKRI 254 (337)
Q Consensus 247 ~~v~~~~~ 254 (337)
+++++...
T Consensus 329 ~~~~~~~~ 336 (348)
T 3lst_A 329 RLDRVVGT 336 (348)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEEC
Confidence 99999873
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=158.29 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=108.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC---------CeEEEEcCCC------CC--CCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------ECKIVEGDAE------DL--PFP 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------~~~~~~~d~~------~~--~~~ 172 (337)
++.+|||||||+|..+..++.. ++.+|+|+|+|+.|++.|+++.... +++|.+.|+. ++ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 5789999999999877666554 3579999999999999999874321 2568888872 22 245
Q ss_pred CCCccEEEeccccccc---CCHHHHHHHHHHhccCCCEEEEEcCCCCchhH----------------h------------
Q 019684 173 TDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKACIIGPVYPTFWL----------------S------------ 221 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------------~------------ 221 (337)
+++||+|+|..++||+ .+...++++++++|||||++++..+....... .
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 6789999999999875 45578999999999999999987653211000 0
Q ss_pred --hh-----hhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 222 --RY-----FADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 222 --~~-----~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.+ ..+....+.+.+++.++++++||++++...+..
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~~ 248 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFAT 248 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHHH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChHH
Confidence 00 001112356789999999999999999988763
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=139.33 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=111.1
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~ 171 (337)
.+++..++..+... ++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++.. ..+++++.+|+.+...
T Consensus 26 ~~i~~~~l~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 104 (204)
T 3e05_A 26 QEVRAVTLSKLRLQ-DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD 104 (204)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT
T ss_pred HHHHHHHHHHcCCC-CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh
Confidence 44445555555553 7899999999999999999999777999999999999999998642 2579999999965443
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..++||+|++..+++ +...+++++.++|||||++++...... +.+++.++++++|| .++.
T Consensus 105 ~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------~~~~~~~~l~~~g~-~~~~ 164 (204)
T 3e05_A 105 DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD----------------TLTKAVEFLEDHGY-MVEV 164 (204)
T ss_dssp TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH----------------HHHHHHHHHHHTTC-EEEE
T ss_pred cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc----------------cHHHHHHHHHHCCC-ceeE
Confidence 346799999988775 788999999999999999999765321 35678889999999 5555
Q ss_pred EEc
Q 019684 252 KRI 254 (337)
Q Consensus 252 ~~~ 254 (337)
..+
T Consensus 165 ~~~ 167 (204)
T 3e05_A 165 ACV 167 (204)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-18 Score=157.38 Aligned_cols=148 Identities=22% Similarity=0.224 Sum_probs=115.5
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEE
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRY 179 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i 179 (337)
.++...+...++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++++++.+|+.+ ++++ ||+|
T Consensus 199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~--~D~v 271 (372)
T 1fp1_D 199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL---SGIEHVGGDMFA-SVPQ--GDAM 271 (372)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CCCC--EEEE
T ss_pred HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc---CCCEEEeCCccc-CCCC--CCEE
Confidence 3344443123678999999999999999999999999999999 9999877753 579999999977 5554 9999
Q ss_pred EecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchh-------Hhhhhh-----hhhccCCCHHHHHHHHHhCC
Q 019684 180 VSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFW-------LSRYFA-----DVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 180 ~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~~l~~aG 245 (337)
++.+++||++++. .++++++++|||||++++.+...+... ...... ......++.+++.++|+++|
T Consensus 272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 351 (372)
T 1fp1_D 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSG 351 (372)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTT
T ss_pred EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCC
Confidence 9999999999987 999999999999999999864322110 111111 01123468999999999999
Q ss_pred CcEEEEEEc
Q 019684 246 FKDVQLKRI 254 (337)
Q Consensus 246 F~~v~~~~~ 254 (337)
|+++++...
T Consensus 352 f~~~~~~~~ 360 (372)
T 1fp1_D 352 FSKFQVACR 360 (372)
T ss_dssp CSEEEEEEE
T ss_pred CceEEEEEc
Confidence 999998874
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=145.17 Aligned_cols=135 Identities=19% Similarity=0.098 Sum_probs=109.5
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLP 170 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~ 170 (337)
+..+.+....+.... +++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ ..+++++++|+ ..+|
T Consensus 32 ~~~~~l~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~d~~~~~~ 105 (226)
T 3m33_A 32 PDPELTFDLWLSRLL--TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN--APHADVYEWNGKGELP 105 (226)
T ss_dssp SCTTHHHHHHHHHHC--CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH--CTTSEEEECCSCSSCC
T ss_pred CCHHHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh--CCCceEEEcchhhccC
Confidence 344455555444322 47899999999999999999998 78999999999999999998 35799999999 6678
Q ss_pred CC-CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 171 FP-TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 171 ~~-~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+. +++||+|++. .++..+++++.++|||||+++... .+.+.+++.++++++||+++
T Consensus 106 ~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~-----------------~~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 106 AGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVG-----------------PRLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp TTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEE-----------------SSSCCTHHHHHHHHTTCEEE
T ss_pred CcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeC-----------------CcCCHHHHHHHHHHCCCeEE
Confidence 87 8899999987 466789999999999999998211 13356789999999999998
Q ss_pred EEEEcC
Q 019684 250 QLKRIG 255 (337)
Q Consensus 250 ~~~~~~ 255 (337)
.+....
T Consensus 163 ~~~~~~ 168 (226)
T 3m33_A 163 AEDHVS 168 (226)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 876654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-19 Score=155.96 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=107.0
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCC-
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDL- 169 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~- 169 (337)
|...+.+....... .+|.+|||||||+|..+..+++.. ..+++|||+|+.+++.|+++... .++.++.+|+++.
T Consensus 45 we~~~m~~~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~ 121 (236)
T 3orh_A 45 WETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp GGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHHHhhc--cCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhc
Confidence 44444444333332 478999999999999999998874 36899999999999999987643 4578888888543
Q ss_pred -CCCCCCccEEEe-----cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHh
Q 019684 170 -PFPTDYADRYVS-----AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 170 -~~~~~~fD~i~~-----~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (337)
++++++||.|+. ...++|..+...++++++|+|||||+|.+.+...........+..... ...+.+...|.+
T Consensus 122 ~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~e 199 (236)
T 3orh_A 122 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITI--MFEETQVPALLE 199 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHH--HHHHHTHHHHHH
T ss_pred ccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhh--hhHHHHHHHHHH
Confidence 467888999974 566778888999999999999999999875421110000000000000 013456678889
Q ss_pred CCCcEEEE
Q 019684 244 AGFKDVQL 251 (337)
Q Consensus 244 aGF~~v~~ 251 (337)
+||+++.+
T Consensus 200 aGF~~~~i 207 (236)
T 3orh_A 200 AGFRRENI 207 (236)
T ss_dssp HTCCGGGE
T ss_pred cCCeEEEE
Confidence 99985444
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=153.09 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=116.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. ..+++++.+|+.+ +++. .||+|++.+++
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl 259 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFVL 259 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESCG
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcccc
Confidence 678999999999999999999988899999999 999999987642 2479999999965 3444 39999999999
Q ss_pred cccCCHH--HHHHHHHHhccCCCEEEEEcCC-CCch---hHhhhhh-----hhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 186 EYWPDPQ--RGIREAYRVLKLGGKACIIGPV-YPTF---WLSRYFA-----DVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 186 ~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~-~~~~---~~~~~~~-----~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
||+++.. ++++++.++|||||++++.+.. .+.. ....... ......++.+++.++|+++||+++++...
T Consensus 260 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 339 (360)
T 1tw3_A 260 LNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQL 339 (360)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeC
Confidence 9998874 8999999999999999998876 3321 1111111 11124578999999999999999998887
Q ss_pred Cc
Q 019684 255 GP 256 (337)
Q Consensus 255 ~~ 256 (337)
+.
T Consensus 340 ~~ 341 (360)
T 1tw3_A 340 PS 341 (360)
T ss_dssp EC
T ss_pred CC
Confidence 53
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-18 Score=145.38 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=98.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.+|||||||+|.++..++ .+++|+|+|+. ++.++.+|+.++++++++||+|++..++| .
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~ 127 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-G 127 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------STTEEESCTTSCSCCTTCEEEEEEESCCC-S
T ss_pred CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------CceEEEeccccCCCCCCCEeEEEEehhcc-c
Confidence 367899999999999987762 68999999987 46789999998888888999999999996 4
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.++..+++++.++|+|||++++.+... .+.+.+++.++|+++||++++.....
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~i~~~~~--------------~~~~~~~~~~~l~~~Gf~~~~~~~~~ 180 (215)
T 2zfu_A 128 TNIRDFLEEANRVLKPGGLLKVAEVSS--------------RFEDVRTFLRAVTKLGFKIVSKDLTN 180 (215)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEECGG--------------GCSCHHHHHHHHHHTTEEEEEEECCS
T ss_pred cCHHHHHHHHHHhCCCCeEEEEEEcCC--------------CCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 889999999999999999999986532 13478999999999999998866544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=145.78 Aligned_cols=139 Identities=16% Similarity=0.082 Sum_probs=109.3
Q ss_pred CCCEEEEEcCcc---cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCC-----------CCCC
Q 019684 110 RNMLVVDVGGGT---GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLP-----------FPTD 174 (337)
Q Consensus 110 ~~~~VLDiGcG~---G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~-----------~~~~ 174 (337)
...+|||||||+ |.++..+.+..|+.+|+++|+|+.|++.|+++.. ..+++++.+|+.+.. +...
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 9988877777788999999999999999998854 357999999997531 2224
Q ss_pred CccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCc-hhH---hhhhhhh--hccCCCHHHHHHHHHhCCC
Q 019684 175 YADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPT-FWL---SRYFADV--WMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~---~~~~~~~--~~~~~~~~~~~~~l~~aGF 246 (337)
+||+|++..++||+++ ...++++++++|+|||+|++.+..... ... ...+... ...+++.+++.++| .||
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l--~G~ 234 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQF--GDF 234 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTT--TTC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHh--CCC
Confidence 7999999999999987 789999999999999999998765431 111 1111111 12357999999999 599
Q ss_pred cEEE
Q 019684 247 KDVQ 250 (337)
Q Consensus 247 ~~v~ 250 (337)
++++
T Consensus 235 ~l~~ 238 (274)
T 2qe6_A 235 ELVE 238 (274)
T ss_dssp EECT
T ss_pred eEcc
Confidence 8765
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=153.31 Aligned_cols=138 Identities=25% Similarity=0.343 Sum_probs=111.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.+ ++++ ||+|++.+++||++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWT 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---TTEEEEECCTTT-CCCC--CSEEEEESCGGGSC
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---CCcEEEeccccC-CCCC--ccEEEeehhhccCC
Confidence 668999999999999999999999999999999 9999888753 469999999966 5443 99999999999999
Q ss_pred CHH--HHHHHHHHhccC---CCEEEEEcCCCCchh------Hhhhhhhhh-----ccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 190 DPQ--RGIREAYRVLKL---GGKACIIGPVYPTFW------LSRYFADVW-----MLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 190 ~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
+.. +++++++++||| ||++++.+...+... ......+.. ...++.++|.++|+++||+++++..
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 887 999999999999 999999876433211 111111111 2336889999999999999998877
Q ss_pred c
Q 019684 254 I 254 (337)
Q Consensus 254 ~ 254 (337)
.
T Consensus 341 ~ 341 (352)
T 1fp2_A 341 L 341 (352)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=150.20 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=107.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++.+|+.+++. +++||+|++..+++|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 6789999999999999999998 77999999999999999987432 278999999988776 678999999999999
Q ss_pred cCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 188 WPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 188 ~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
+++. ..+++++.++|+|||.+++........... .......++.+++.++++. |+++.....
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 260 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC---PLPFSFTFAENELKEYYKD--WEFLEYNEN 260 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---SSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC---CCCccccCCHHHHHHHhcC--CEEEEEEcc
Confidence 9654 589999999999999987764432211000 0111234577888888865 988877543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-18 Score=148.61 Aligned_cols=100 Identities=24% Similarity=0.267 Sum_probs=83.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEecc-ccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAG-SIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~-~l~ 186 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..++.++++|+.+++++ ++||+|++.. .++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchh
Confidence 6789999999999999999987 7899999999999999998743 23689999999887765 5799999864 444
Q ss_pred ccC--CHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWP--DPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~--~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++. +...+++++.++|+|||.+++..
T Consensus 118 ~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 443 45689999999999999998754
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-17 Score=134.39 Aligned_cols=139 Identities=19% Similarity=0.157 Sum_probs=110.3
Q ss_pred ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC
Q 019684 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA 166 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~ 166 (337)
++.|++.++.+.+. +.... .++.+|||+|||+|.++..+++. + +|+|+|+|+.+++. ..+++++++|+
T Consensus 3 v~~P~~~~~~l~~~-l~~~~--~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~------~~~~~~~~~d~ 70 (170)
T 3q87_B 3 WYEPGEDTYTLMDA-LEREG--LEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES------HRGGNLVRADL 70 (170)
T ss_dssp SCCCCHHHHHHHHH-HHHHT--CCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT------CSSSCEEECST
T ss_pred ccCcCccHHHHHHH-HHhhc--CCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc------ccCCeEEECCh
Confidence 34556566666555 33321 25679999999999999999998 4 99999999999988 36789999999
Q ss_pred CCCCCCCCCccEEEecccccccCCH---------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHH
Q 019684 167 EDLPFPTDYADRYVSAGSIEYWPDP---------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEY 237 (337)
Q Consensus 167 ~~~~~~~~~fD~i~~~~~l~~~~~~---------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
.+ ++.+++||+|+++..+++.++. ..+++++.+.| |||++++..... .+.+++
T Consensus 71 ~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~----------------~~~~~l 132 (170)
T 3q87_B 71 LC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA----------------NRPKEV 132 (170)
T ss_dssp TT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG----------------GCHHHH
T ss_pred hh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC----------------CCHHHH
Confidence 87 6666889999999888876554 57889999999 999999876432 256789
Q ss_pred HHHHHhCCCcEEEEEEcC
Q 019684 238 IEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 238 ~~~l~~aGF~~v~~~~~~ 255 (337)
.++++++||+.+.+....
T Consensus 133 ~~~l~~~gf~~~~~~~~~ 150 (170)
T 3q87_B 133 LARLEERGYGTRILKVRK 150 (170)
T ss_dssp HHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHCCCcEEEEEeec
Confidence 999999999988877654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=138.53 Aligned_cols=138 Identities=21% Similarity=0.195 Sum_probs=106.1
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCC----CCCCCCCc
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAED----LPFPTDYA 176 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~----~~~~~~~f 176 (337)
+....+ .++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++.. .++.++.+|+.+ .++. ++|
T Consensus 67 l~~~~~-~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~ 144 (230)
T 1fbn_A 67 LKVMPI-KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKV 144 (230)
T ss_dssp CCCCCC-CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCE
T ss_pred ccccCC-CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccE
Confidence 554444 378899999999999999999997668999999999999999988643 679999999987 6665 679
Q ss_pred cEEEecccccccCCH---HHHHHHHHHhccCCCEEEEEcC---CCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 177 DRYVSAGSIEYWPDP---QRGIREAYRVLKLGGKACIIGP---VYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 177 D~i~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
|+|+ ++++++ ..+++++.++|||||++++.-. .......... ..+++. +|+++||+.++
T Consensus 145 D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~---------~~~~l~-~l~~~Gf~~~~ 209 (230)
T 1fbn_A 145 DVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEI---------FKEQKE-ILEAGGFKIVD 209 (230)
T ss_dssp EEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHH---------HHHHHH-HHHHHTEEEEE
T ss_pred EEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHh---------hHHHHH-HHHHCCCEEEE
Confidence 9999 455666 6789999999999999998611 0000000000 136677 89999999999
Q ss_pred EEEcCc
Q 019684 251 LKRIGP 256 (337)
Q Consensus 251 ~~~~~~ 256 (337)
...+.+
T Consensus 210 ~~~~~~ 215 (230)
T 1fbn_A 210 EVDIEP 215 (230)
T ss_dssp EEECTT
T ss_pred EEccCC
Confidence 887753
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=138.79 Aligned_cols=144 Identities=11% Similarity=0.035 Sum_probs=108.2
Q ss_pred cccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCC---CCCCCCCcc
Q 019684 103 EPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAED---LPFPTDYAD 177 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~---~~~~~~~fD 177 (337)
+.+.+ ++|.+|||+|||+|.++..+++.. |..+|+|+|+|+.|++.+++++.. .|+..+.+|..+ .++..+++|
T Consensus 71 ~~l~i-kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 71 IELPV-KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp SCCCC-CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred hhcCC-CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence 34445 489999999999999999999985 678999999999999999988654 689999999854 345667899
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
+|++. +.|..+...++.++.+.|||||++++............. -....+..+.|+++||+.++...+.+
T Consensus 150 vVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~-------~~~~~~ev~~L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 150 GLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEP-------SEVYKREIKTLMDGGLEIKDVVHLDP 219 (233)
T ss_dssp EEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCC-------CHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred EEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCCh-------HHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 99864 445566778999999999999999986422111000000 00113445678999999999988764
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-17 Score=138.93 Aligned_cols=127 Identities=22% Similarity=0.133 Sum_probs=103.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~--~~~~~fD~i~~~~~ 184 (337)
++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.|+++.. ..++.++.+|+.+++ +++++||+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 5789999999999999999999888999999999999999998742 257999999998876 66788999999865
Q ss_pred ccccC--------CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 185 IEYWP--------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 185 l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
..+.. ....+++++.++|+|||.+++...... ..+.+.+.++++||+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG----------------LFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH----------------HHHHHHHHHHHHTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH----------------HHHHHHHHHHHCCCeeeecc
Confidence 44322 125799999999999999998753211 12456778899999987765
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-18 Score=149.59 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=103.9
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCC-
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDL- 169 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~- 169 (337)
|...+...+..... .++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++... .+++++++|+.++
T Consensus 45 ~~~~~~~~l~~~~~--~~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 45 WETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp GGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHHhhcC--CCCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhh
Confidence 44444444333322 36789999999999999999775 345899999999999999987643 5689999999877
Q ss_pred -CCCCCCccEEEe-cccccccC-----CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhcc--CCCHHHHHHH
Q 019684 170 -PFPTDYADRYVS-AGSIEYWP-----DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML--FPKEEEYIEW 240 (337)
Q Consensus 170 -~~~~~~fD~i~~-~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 240 (337)
++++++||+|++ .+.+ +.. +...++++++++|||||++++.+..... ......+.. ....+.....
T Consensus 122 ~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 196 (236)
T 1zx0_A 122 PTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG----ELMKSKYSDITIMFEETQVPA 196 (236)
T ss_dssp GGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH----HHTTTTCSCHHHHHHHHTHHH
T ss_pred cccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHH----HhhchhhhhhhhhccHHHHHH
Confidence 788889999999 5554 222 2347899999999999999987543110 000000000 0012455678
Q ss_pred HHhCCCcE
Q 019684 241 FQKAGFKD 248 (337)
Q Consensus 241 l~~aGF~~ 248 (337)
|.++||+.
T Consensus 197 l~~aGF~~ 204 (236)
T 1zx0_A 197 LLEAGFRR 204 (236)
T ss_dssp HHHTTCCG
T ss_pred HHHCCCCC
Confidence 99999984
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=143.98 Aligned_cols=145 Identities=19% Similarity=0.167 Sum_probs=104.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHH----Hhh---CCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA----KQK---EPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a----~~~---~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
.++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.+ +++ ....+++++++|+.++++.+++ |.|+.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 367899999999999999999998899999999999988853 221 1224799999999999887766 76663
Q ss_pred c---ccc--cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCC----HHHHHHHHHhCCCcEEEEE
Q 019684 182 A---GSI--EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK----EEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 182 ~---~~l--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~aGF~~v~~~ 252 (337)
. ... +|++++..+++++.++|||||++++............... .....+ .+.+..+++++||+++++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVG--EHPEPTPDSADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGT--TCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccc--cCCccchHHHHHHHHHHHHHcCCCceeee
Confidence 2 223 2778889999999999999999998532111000000000 001112 3458889999999999998
Q ss_pred EcCc
Q 019684 253 RIGP 256 (337)
Q Consensus 253 ~~~~ 256 (337)
.+..
T Consensus 183 ~~~~ 186 (218)
T 3mq2_A 183 YLEP 186 (218)
T ss_dssp EECH
T ss_pred ccch
Confidence 8763
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=143.86 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCC-HHHHHHH---HhhCC---CCCeEEEEcCCCCCCCC-CCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS-PHQLAKA---KQKEP---LKECKIVEGDAEDLPFP-TDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s-~~~~~~a---~~~~~---~~~~~~~~~d~~~~~~~-~~~fD~i~ 180 (337)
.++.+|||||||+|.++..+++..++.+|+|+|+| +.|++.| +++.. ..++.++++|++++|.. .+.+|.|+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 36789999999999999999987788999999999 6777666 55432 25799999999888632 13455555
Q ss_pred ecccccc-----cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCH-----HHHHHHHHhCCCcEEE
Q 019684 181 SAGSIEY-----WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE-----EEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 181 ~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~aGF~~v~ 250 (337)
+.....+ ..+...++++++++|||||++++................ ....++. +++.++++++||++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKR-GLPLLSKAYFLSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC---------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhc-CCCCCChhhcchHHHHHHHHHcCCCeee
Confidence 4432211 123457899999999999999984322221110000000 0011122 3489999999999999
Q ss_pred EEEcCccc
Q 019684 251 LKRIGPKW 258 (337)
Q Consensus 251 ~~~~~~~~ 258 (337)
...+...+
T Consensus 182 ~~~~~~~~ 189 (225)
T 3p2e_A 182 VKELDNEY 189 (225)
T ss_dssp EEEECHHH
T ss_pred eeecCHHH
Confidence 99887544
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=139.31 Aligned_cols=128 Identities=15% Similarity=0.105 Sum_probs=103.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCC---CCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFP---TDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~---~~~fD~i~~~~ 183 (337)
++.+|||||||+|..+..++...++.+|+|+|+|+.+++.++++.. ..+++++++|++++++. +++||+|++..
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 6789999999999999999987778999999999999999987632 24699999999776643 57899999876
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+.+...+++++.++|+|||++++........ ..+++.+.++++||++++...+.
T Consensus 150 ----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~--------------~~~~~~~~l~~~g~~~~~~~~~~ 203 (240)
T 1xdz_A 150 ----VARLSVLSELCLPLVKKNGLFVALKAASAEE--------------ELNAGKKAITTLGGELENIHSFK 203 (240)
T ss_dssp ----CSCHHHHHHHHGGGEEEEEEEEEEECC-CHH--------------HHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ----cCCHHHHHHHHHHhcCCCCEEEEEeCCCchH--------------HHHHHHHHHHHcCCeEeEEEEEe
Confidence 4678899999999999999998864321111 13457788999999988877653
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-17 Score=134.34 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=106.9
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC-C
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-L 169 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~-~ 169 (337)
+.++..++..+.. .++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.++++... .++ ++.+|..+ +
T Consensus 11 ~~~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~ 88 (178)
T 3hm2_A 11 QHVRALAISALAP-KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF 88 (178)
T ss_dssp HHHHHHHHHHHCC-CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG
T ss_pred HHHHHHHHHHhcc-cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh
Confidence 3344555555544 377899999999999999999998889999999999999999987432 267 88888844 3
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+..+++||+|++..++++ ..+++++.++|||||++++...... +...+.+++++.|++..
T Consensus 89 ~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 89 DDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE----------------SEQMLWALRKQFGGTIS 148 (178)
T ss_dssp GGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH----------------HHHHHHHHHHHHCCEEE
T ss_pred hccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc----------------cHHHHHHHHHHcCCeeE
Confidence 333378999999999987 5799999999999999998765422 24567788999998877
Q ss_pred EEEEc
Q 019684 250 QLKRI 254 (337)
Q Consensus 250 ~~~~~ 254 (337)
++...
T Consensus 149 ~~~~~ 153 (178)
T 3hm2_A 149 SFAIS 153 (178)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 66443
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-18 Score=145.70 Aligned_cols=152 Identities=18% Similarity=0.100 Sum_probs=101.9
Q ss_pred cccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--CeEEEE
Q 019684 86 HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVE 163 (337)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~ 163 (337)
.++.+++.++.+...+++......++.+|||+|||+|.++..+++..++.+++|+|+|+.+++.++++.... ++++++
T Consensus 6 ~~~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 85 (215)
T 4dzr_A 6 DCLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAA 85 (215)
T ss_dssp GGGSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCH
T ss_pred CccCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEE
Confidence 455667777777777777765434789999999999999999999988889999999999999999886543 577888
Q ss_pred cCCCCCCCCC-----CCccEEEecccccccCCH--------------------------HHHHHHHHHhccCCCEEEEEc
Q 019684 164 GDAEDLPFPT-----DYADRYVSAGSIEYWPDP--------------------------QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 164 ~d~~~~~~~~-----~~fD~i~~~~~l~~~~~~--------------------------~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+|+.+ ++.+ ++||+|+++..+++..+. ..+++++.++|||||++++.+
T Consensus 86 ~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 86 ADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred cchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 88866 5554 789999996444332211 678899999999999944443
Q ss_pred CCCCchhHhhhhhhhhccCCCHHHHHHHHH--hCCCcEEEEEEc
Q 019684 213 PVYPTFWLSRYFADVWMLFPKEEEYIEWFQ--KAGFKDVQLKRI 254 (337)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aGF~~v~~~~~ 254 (337)
.. ....+.+.++++ ++||..+++...
T Consensus 165 ~~----------------~~~~~~~~~~l~~~~~gf~~~~~~~~ 192 (215)
T 4dzr_A 165 VG----------------HNQADEVARLFAPWRERGFRVRKVKD 192 (215)
T ss_dssp CT----------------TSCHHHHHHHTGGGGGGTEECCEEEC
T ss_pred EC----------------CccHHHHHHHHHHhhcCCceEEEEEe
Confidence 32 124577888999 999987776554
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=135.93 Aligned_cols=127 Identities=19% Similarity=0.141 Sum_probs=100.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~--~~~~~fD~i~~~~~ 184 (337)
++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.|+++.. ..++.++.+|+.+++ +++++||.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 5789999999999999999999899999999999999999998642 357999999998765 66788999987654
Q ss_pred ccccCC--------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 185 IEYWPD--------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 185 l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
..+... ...+++++.++|||||.+++...... ..+.+.+.++++||..+...
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~----------------~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG----------------LFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH----------------HHHHHHHHHHHHTCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCcccccc
Confidence 432221 25789999999999999998754211 12345677888899876643
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=146.95 Aligned_cols=139 Identities=24% Similarity=0.287 Sum_probs=111.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.+ +++ .||+|++.+++||++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~ 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN---ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC---SSEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC---CCcEEEeCccCC-CCC--CceEEEEcccccCCC
Confidence 568999999999999999999999999999999 7888777642 569999999977 555 499999999999999
Q ss_pred CHH--HHHHHHHHhccC---CCEEEEEcCCCCch-------hHhhhhh-----hhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 190 DPQ--RGIREAYRVLKL---GGKACIIGPVYPTF-------WLSRYFA-----DVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 190 ~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+.. +++++++++|+| ||++++.+...+.. .....+. ......++.++|.++|+++||+++++.
T Consensus 266 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 345 (358)
T 1zg3_A 266 DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT 345 (358)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEE
Confidence 987 999999999999 99999987543211 1111111 011234689999999999999999988
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
...
T Consensus 346 ~~~ 348 (358)
T 1zg3_A 346 PIS 348 (358)
T ss_dssp EET
T ss_pred ecC
Confidence 754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=131.08 Aligned_cols=135 Identities=14% Similarity=0.169 Sum_probs=106.1
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCC-CeEEEEcCCCCCCC
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLK-ECKIVEGDAEDLPF 171 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~-~~~~~~~d~~~~~~ 171 (337)
.+...++..+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. ... +++++.+|+.+...
T Consensus 42 ~~~~~~l~~l~~-~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 118 (204)
T 3njr_A 42 PMRALTLAALAP-RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA 118 (204)
T ss_dssp HHHHHHHHHHCC-CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT
T ss_pred HHHHHHHHhcCC-CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc
Confidence 344444555554 37889999999999999999998 789999999999999999874 223 79999999977332
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
....||+|++...+ +.. +++++.++|||||++++...... +..++.+++++.||++.++
T Consensus 119 ~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~----------------~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 119 DLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE----------------SETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp TSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH----------------HHHHHHHHHHHHCSEEEEE
T ss_pred cCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc----------------cHHHHHHHHHhCCCcEEEE
Confidence 33579999987744 566 99999999999999998765421 3467778999999988777
Q ss_pred EEc
Q 019684 252 KRI 254 (337)
Q Consensus 252 ~~~ 254 (337)
...
T Consensus 178 ~~~ 180 (204)
T 3njr_A 178 DIA 180 (204)
T ss_dssp EEE
T ss_pred Eee
Confidence 554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=134.07 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.++.+|||+|||+|.++..+++..+ .+++|+|+|+.+++.++++... .+++++.+|+.++++++++||+|++..++++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 4778999999999999999998832 3899999999999999988654 5799999999988888889999999988876
Q ss_pred cC---------------CHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 188 WP---------------DPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 188 ~~---------------~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+. +...+++++.++|||||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 64 45789999999999999999988754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=136.07 Aligned_cols=129 Identities=19% Similarity=0.153 Sum_probs=101.0
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCC-CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDL-PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~-~~~~~~fD~i~~~~~ 184 (337)
+++.+|||+||| +|.++..+++.. +.+|+|+|+|+.+++.|+++... .+++++++|+..+ ++++++||+|+++-.
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 478999999999 999999999885 68999999999999999987532 2689999997433 455688999999866
Q ss_pred ccccCC-------------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC
Q 019684 185 IEYWPD-------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 185 l~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 245 (337)
+++..+ ...+++++.++|||||++++..+... ...+++.++++++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~l~~~g 197 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------KLLNVIKERGIKLG 197 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH---------------HHHHHHHHHHHHTT
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH---------------hHHHHHHHHHHHcC
Confidence 654433 36799999999999999998754321 12467889999999
Q ss_pred CcEEEEEE
Q 019684 246 FKDVQLKR 253 (337)
Q Consensus 246 F~~v~~~~ 253 (337)
|++..+..
T Consensus 198 ~~~~~~~~ 205 (230)
T 3evz_A 198 YSVKDIKF 205 (230)
T ss_dssp CEEEEEEE
T ss_pred CceEEEEe
Confidence 97766644
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=139.41 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=104.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCC---CCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFP---TDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~---~~~fD~i~~~ 182 (337)
.++.+|||||||+|..+..++...|+.+|+++|+|+.+++.++++.. ..+++++++|+++++.. +++||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 36789999999999999999998889999999999999999998743 24699999999776542 4789999997
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.+ .+...+++.+.++|||||++++........ ...++...++..||.++++..+.
T Consensus 159 a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~--------------e~~~~~~~l~~~G~~~~~~~~~~ 213 (249)
T 3g89_A 159 AV----APLCVLSELLLPFLEVGGAAVAMKGPRVEE--------------ELAPLPPALERLGGRLGEVLALQ 213 (249)
T ss_dssp SS----CCHHHHHHHHGGGEEEEEEEEEEECSCCHH--------------HHTTHHHHHHHHTEEEEEEEEEE
T ss_pred Cc----CCHHHHHHHHHHHcCCCeEEEEEeCCCcHH--------------HHHHHHHHHHHcCCeEEEEEEee
Confidence 53 567889999999999999998865322211 12456678889999999888774
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=141.45 Aligned_cols=131 Identities=18% Similarity=0.287 Sum_probs=106.4
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCC
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~ 175 (337)
++..+.. .++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.++++.. ..+++++.+|+.+ ++++++
T Consensus 102 ~~~~~~~-~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~ 179 (275)
T 1yb2_A 102 IIMRCGL-RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQM 179 (275)
T ss_dssp ----CCC-CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCC
T ss_pred HHHHcCC-CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCC
Confidence 3444444 37889999999999999999987 578899999999999999998753 2479999999977 566778
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
||+|++ +.+++..+++++.++|||||++++..+... ..+++.+.++++||..++....
T Consensus 180 fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----------------~~~~~~~~l~~~Gf~~~~~~~~ 237 (275)
T 1yb2_A 180 YDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD----------------QSEKTVLSLSASGMHHLETVEL 237 (275)
T ss_dssp EEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH----------------HHHHHHHHSGGGTEEEEEEEEE
T ss_pred ccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCeEEEEEEE
Confidence 999997 677888999999999999999999875421 2356778889999998888764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-16 Score=152.66 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=116.4
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhC---------CCCCeEEEEcCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---------PLKECKIVEGDA 166 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~~~d~ 166 (337)
....++..+... ++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++. ...+++++++|+
T Consensus 709 Rle~LLelL~~~-~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa 787 (950)
T 3htx_A 709 RVEYALKHIRES-SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI 787 (950)
T ss_dssp HHHHHHHHHHHS-CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred HHHHHHHHhccc-CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence 344444444332 67899999999999999999985 3479999999999999998732 224799999999
Q ss_pred CCCCCCCCCccEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhHhhhh-----------------hhh
Q 019684 167 EDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYF-----------------ADV 227 (337)
Q Consensus 167 ~~~~~~~~~fD~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-----------------~~~ 227 (337)
.++++.+++||+|++..+++|++++. .+++++.++|||| .+++.++..........+ ...
T Consensus 788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~ 866 (950)
T 3htx_A 788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNH 866 (950)
T ss_dssp TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCS
T ss_pred HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhccccccccccccccccccccc
Confidence 99999889999999999999999876 5999999999999 888877654322111111 000
Q ss_pred hcc-CCCHHHHHH----HHHhCCCcEEEEEEcCcc
Q 019684 228 WML-FPKEEEYIE----WFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 228 ~~~-~~~~~~~~~----~l~~aGF~~v~~~~~~~~ 257 (337)
.+. ..+.+++.. +.++.||++ +...++..
T Consensus 867 DHrFEWTReEFr~Wae~LAer~GYsV-efvGVGDg 900 (950)
T 3htx_A 867 DHKFEWTREQFNQWASKLGKRHNYSV-EFSGVGGS 900 (950)
T ss_dssp SCSCCBCHHHHHHHHHHHHHHTTEEE-EEEEESSC
T ss_pred CcceeecHHHHHHHHHHHHHhcCcEE-EEEccCCC
Confidence 111 246677776 667789964 55566643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=143.20 Aligned_cols=145 Identities=19% Similarity=0.136 Sum_probs=111.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----------CCCeEEEEcCCCCCC----CC--C
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECKIVEGDAEDLP----FP--T 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~~~d~~~~~----~~--~ 173 (337)
++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++.. ..+++++++|+.+++ ++ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 6789999999999999998875 57899999999999999987642 236899999998765 53 4
Q ss_pred CCccEEEeccccccc-CC---HHHHHHHHHHhccCCCEEEEEcCCCCchhHh-------hh--------hh---------
Q 019684 174 DYADRYVSAGSIEYW-PD---PQRGIREAYRVLKLGGKACIIGPVYPTFWLS-------RY--------FA--------- 225 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~-~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~~--------~~--------- 225 (337)
++||+|++..++||+ .+ ...+++++.++|||||.+++..+........ .. +.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 192 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG 192 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence 589999999999987 44 4689999999999999999986543211000 00 00
Q ss_pred -----------hhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 226 -----------DVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 226 -----------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+......+.+++.++++++||+++....+.
T Consensus 193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~ 233 (313)
T 3bgv_A 193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFL 233 (313)
T ss_dssp CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHH
T ss_pred ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHH
Confidence 000123567899999999999999988765
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-16 Score=136.14 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=110.3
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCCCCCCCC
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFP 172 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~ 172 (337)
...++..... .++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.++++. ...++++..+|+.+.+++
T Consensus 85 ~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 85 ASAMVTLLDL-APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHHcCC-CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 3444454544 37889999999999999999998 46789999999999999999874 246799999999887777
Q ss_pred CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 173 TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+++||+|++ +.+++..+++++.++|+|||++++..+... ...++.+.|+++||..++..
T Consensus 164 ~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~l~~~gf~~~~~~ 222 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT----------------QVLELVRAAEAHPFRLERVL 222 (258)
T ss_dssp TTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH----------------HHHHHHHHHTTTTEEEEEEE
T ss_pred CCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCceEEEE
Confidence 788999997 467788999999999999999999876421 13466778889999988877
Q ss_pred Ec
Q 019684 253 RI 254 (337)
Q Consensus 253 ~~ 254 (337)
..
T Consensus 223 ~~ 224 (258)
T 2pwy_A 223 EV 224 (258)
T ss_dssp EE
T ss_pred Ee
Confidence 65
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=129.98 Aligned_cols=133 Identities=17% Similarity=0.056 Sum_probs=94.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCC----CCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDL----PFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~----~~~~~~fD~i~~~~ 183 (337)
+++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+.+. ..++.++.+|+... ++. ++||+|++..
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQDI 134 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence 47889999999999999999998766799999999987654433221 25788999998763 444 6899999872
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH----HHHHhCCCcEEEEEEcCc
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI----EWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~aGF~~v~~~~~~~ 256 (337)
..+ .+...+++++.++|||||++++..... ......+.+++. +.|+++ |++++.....+
T Consensus 135 -~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p 197 (210)
T 1nt2_A 135 -AQK-NQIEILKANAEFFLKEKGEVVIMVKAR-----------SIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMP 197 (210)
T ss_dssp -CST-THHHHHHHHHHHHEEEEEEEEEEEEHH-----------HHCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTT
T ss_pred -cCh-hHHHHHHHHHHHHhCCCCEEEEEEecC-----------CccccCCHHHHHHHHHHHHHhh-cEEeeeecCCC
Confidence 221 223346999999999999999873210 000112334432 338889 99999988753
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-16 Score=135.64 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=84.9
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC--CCCCCCCc
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED--LPFPTDYA 176 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~--~~~~~~~f 176 (337)
..++..+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.....+.....++.. ....+++|
T Consensus 35 ~~il~~l~l-~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLENI-VPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTTC-CTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcCC-CCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 334444444 37889999999999999999988 78999999999999999998764433222222211 11225689
Q ss_pred cEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcC
Q 019684 177 DRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+|++..+++|+.. ....++++.++| |||+++++..
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 99999999999854 457999999999 9999998743
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=134.30 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=103.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++.. ..+++++.+|+.+.+ +++||+|++...++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILAE 136 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCHH
T ss_pred CCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcHH
Confidence 6789999999999999998875 56799999999999999998743 234899999997643 57899999998877
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+ ...+++++.++|+|||++++.+.... +.+++.++++++||++++....+
T Consensus 137 ~---~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~~~~Gf~~~~~~~~~ 186 (205)
T 3grz_A 137 I---LLDLIPQLDSHLNEDGQVIFSGIDYL----------------QLPKIEQALAENSFQIDLKMRAG 186 (205)
T ss_dssp H---HHHHGGGSGGGEEEEEEEEEEEEEGG----------------GHHHHHHHHHHTTEEEEEEEEET
T ss_pred H---HHHHHHHHHHhcCCCCEEEEEecCcc----------------cHHHHHHHHHHcCCceEEeeccC
Confidence 5 36889999999999999998754322 35778899999999999887754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=132.65 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=95.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEecc-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSAG- 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~~~- 183 (337)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++++++.|...++ +.+++||+|++..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 47899999999999999999988 78999999999999999987532 57899998876643 4467899998863
Q ss_pred cccc--------cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 184 SIEY--------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 184 ~l~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.+++ ..+....++++.++|||||++++............. ....++.+.+...+|.+.....+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEK--------DAVLEYVIGLDQRVFTAMLYQPLN 170 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHH--------HHHHHHHHHSCTTTEEEEEEEESS
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHH--------HHHHHHHHhCCCceEEEEEehhhc
Confidence 2221 122347889999999999999987643221100000 012334455556778887777654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=136.14 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=86.0
Q ss_pred cCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 105 ~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
+.+ +++.+|||||||+|.++..+..+.++++|+|+|+|+++++.|+++.. ..+++++++|+.+++ +++||+|++
T Consensus 118 a~l-~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 118 GRF-RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp TTC-CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred cCC-CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence 444 48899999999999776554444568999999999999999998732 268999999998865 678999998
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... .+++.++++++.++|||||++++.+.
T Consensus 195 ~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 195 AAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 654 57889999999999999999998763
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-17 Score=143.57 Aligned_cols=179 Identities=10% Similarity=-0.006 Sum_probs=114.2
Q ss_pred HHhhhhhHhhhcccCCC----cchHHHHHHhccccCCC-CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHH
Q 019684 75 WFYRFLSIVYDHVINPG----HWTEDMRDDALEPADLS-NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149 (337)
Q Consensus 75 ~~y~~~~~~y~~~~~~~----~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~ 149 (337)
.|++.........+.+. +.++.+...++...... .++.+|||+|||+|.++..++...++.+|+|+|+|+.+++.
T Consensus 25 ~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~ 104 (254)
T 2h00_A 25 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY 104 (254)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred HcCCeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 34444444444455554 34455555555543321 25789999999999999999887777899999999999999
Q ss_pred HHhhCC----CCCeEEEEcCCCCC---CCC---CCCccEEEecccccccC---------------CHHHHHHHHHHhccC
Q 019684 150 AKQKEP----LKECKIVEGDAEDL---PFP---TDYADRYVSAGSIEYWP---------------DPQRGIREAYRVLKL 204 (337)
Q Consensus 150 a~~~~~----~~~~~~~~~d~~~~---~~~---~~~fD~i~~~~~l~~~~---------------~~~~~l~~~~~~Lkp 204 (337)
|+++.. ..+++++++|+.+. +++ +++||+|+++-.+++.. ....++.++.++|||
T Consensus 105 a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp 184 (254)
T 2h00_A 105 AKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE 184 (254)
T ss_dssp HHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHH
T ss_pred HHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec
Confidence 998743 23489999998652 344 25799999985554332 112467889999999
Q ss_pred CCEEEEEcCCCCchhHhhhhhhh-h-----ccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 205 GGKACIIGPVYPTFWLSRYFADV-W-----MLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 205 gG~l~i~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
||.+.+.+..... ........ + ....+.+++.++|+++||+.+++..+.
T Consensus 185 gG~l~~~~~~~~~--~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 185 GGELEFVKRIIHD--SLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp HTHHHHHHHHHHH--HHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCEEEEEHHHHHH--HHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEe
Confidence 9998776431110 00011100 0 012344789999999999998887664
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-16 Score=137.11 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=84.9
Q ss_pred CCCEEEEEcCcccH----HHHHHHhhCC----CCeEEEEeCCHHHHHHHHhhC---------------------C---C-
Q 019684 110 RNMLVVDVGGGTGF----TTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE---------------------P---L- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~----~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~---------------------~---~- 156 (337)
++.+|||+|||||. ++..+++..+ +.+|+|+|+|+.+++.|+++. . .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 5666666544 469999999999999999863 1 0
Q ss_pred ---------CCeEEEEcCCCCCCCC-CCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEE
Q 019684 157 ---------KECKIVEGDAEDLPFP-TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 157 ---------~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~ 211 (337)
.++.|.++|+.+.+++ .++||+|+|.++++|+++. .++++++++.|+|||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2589999999876554 5679999999999999766 68999999999999999884
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=133.32 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---------CCCCeEEEEcCCCC-CC--CCCCCc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------PLKECKIVEGDAED-LP--FPTDYA 176 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~~~d~~~-~~--~~~~~f 176 (337)
.++.+|||||||+|.++..+++..|+..++|+|+|+.+++.|++++ ...|+.++++|+.+ ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 3567999999999999999999988999999999999999887642 23679999999976 66 678899
Q ss_pred cEEEecccccccCC--------HHHHHHHHHHhccCCCEEEEEcC
Q 019684 177 DRYVSAGSIEYWPD--------PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|.|++...-.+... ...+++++.++|||||.|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99987543322211 13699999999999999998754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=128.04 Aligned_cols=136 Identities=17% Similarity=0.244 Sum_probs=104.0
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCC--eEEEEcCCCCCCCCC
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKE--CKIVEGDAEDLPFPT 173 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~--~~~~~~d~~~~~~~~ 173 (337)
..+++.+... ++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. ..+ ++++.+|+.+ +..+
T Consensus 42 ~~l~~~~~~~-~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 117 (194)
T 1dus_A 42 KILVENVVVD-KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD 117 (194)
T ss_dssp HHHHHHCCCC-TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred HHHHHHcccC-CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-cccc
Confidence 3334444443 7789999999999999999988 7899999999999999998742 233 9999999977 3446
Q ss_pred CCccEEEecccccc-cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 174 DYADRYVSAGSIEY-WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 174 ~~fD~i~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++||+|++...+++ ..+...+++++.++|+|||.+++..+.... .+++.+.+++. |..+++.
T Consensus 118 ~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~----------------~~~~~~~l~~~-~~~~~~~ 180 (194)
T 1dus_A 118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG----------------AKSLAKYMKDV-FGNVETV 180 (194)
T ss_dssp SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH----------------HHHHHHHHHHH-HSCCEEE
T ss_pred CCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC----------------hHHHHHHHHHH-hcceEEE
Confidence 78999999988876 345678999999999999999998765321 23466677776 5555554
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
...
T Consensus 181 ~~~ 183 (194)
T 1dus_A 181 TIK 183 (194)
T ss_dssp EEE
T ss_pred ecC
Confidence 443
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-16 Score=131.68 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=97.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC---CCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~---~~~~fD~i~~~~~l 185 (337)
+++.+|||||||. +++|+|+.|++.|+++... +++++++|++++++ ++++||+|++..++
T Consensus 11 ~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN-EGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT-TSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc-CcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 4789999999996 2399999999999998753 58999999988876 78899999999999
Q ss_pred ccc-CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 186 EYW-PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 186 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
+|+ ++...++++++++|||||++++.++...... . .....+.+++.++|+++|| +. +...
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~------~-~~~~~~~~~~~~~l~~aGf-i~-~~~~ 134 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD------N-NSKVKTASKLCSALTLSGL-VE-VKEL 134 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC------S-SSSSCCHHHHHHHHHHTTC-EE-EEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc------c-ccccCCHHHHHHHHHHCCC-cE-eecC
Confidence 999 9999999999999999999999654321100 0 1123478999999999999 43 4443
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=128.75 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=97.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|.++..++...|+.+++|+|+|+.+++.++++.. ..+++++.+|+.+.+ ++++||+|++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~--- 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA--- 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec---
Confidence 4789999999999999999998888999999999999999997632 245899999998765 456799999754
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
+.+...+++++.++|+|||++++.... ...+++.++++ ||+.++...+
T Consensus 141 -~~~~~~~l~~~~~~L~~gG~l~~~~~~-----------------~~~~~~~~~~~--g~~~~~~~~~ 188 (207)
T 1jsx_A 141 -FASLNDMVSWCHHLPGEQGRFYALKGQ-----------------MPEDEIALLPE--EYQVESVVKL 188 (207)
T ss_dssp -SSSHHHHHHHHTTSEEEEEEEEEEESS-----------------CCHHHHHTSCT--TEEEEEEEEE
T ss_pred -cCCHHHHHHHHHHhcCCCcEEEEEeCC-----------------CchHHHHHHhc--CCceeeeeee
Confidence 356789999999999999999987432 13455555554 9998876643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=133.42 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=111.1
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL 169 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~ 169 (337)
......++..... .++.+|||+|||+|.++..+++. .|+.+++++|+|+.+++.|+++.. .++++++.+|+.+.
T Consensus 79 ~~~~~~i~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 157 (255)
T 3mb5_A 79 PKDAALIVAYAGI-SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG 157 (255)
T ss_dssp HHHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred HhHHHHHHHhhCC-CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence 3344445555554 37899999999999999999998 678999999999999999998742 23499999999763
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC--Cc
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG--FK 247 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG--F~ 247 (337)
+++++||+|++ +.+++..+++++.++|+|||++++..+... ..+++.+.++++| |.
T Consensus 158 -~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~l~~~g~~f~ 215 (255)
T 3mb5_A 158 -IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSN----------------QVMRLHEKLREFKDYFM 215 (255)
T ss_dssp -CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHTGGGBS
T ss_pred -cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH----------------HHHHHHHHHHHcCCCcc
Confidence 66778999997 567888899999999999999998865421 2456778999999 99
Q ss_pred EEEEEEcC
Q 019684 248 DVQLKRIG 255 (337)
Q Consensus 248 ~v~~~~~~ 255 (337)
.++.....
T Consensus 216 ~~~~~e~~ 223 (255)
T 3mb5_A 216 KPRTINVL 223 (255)
T ss_dssp CCEEECCC
T ss_pred ccEEEEEe
Confidence 88887664
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-16 Score=143.60 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=97.7
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC------------CCCCeEE
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------PLKECKI 161 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~------------~~~~~~~ 161 (337)
.......++..+.+. ++.+|||||||+|..++.++...+..+|+|||+|+.+++.|+++. ...+++|
T Consensus 158 ~~~~i~~il~~l~l~-~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef 236 (438)
T 3uwp_A 158 SFDLVAQMIDEIKMT-DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 236 (438)
T ss_dssp HHHHHHHHHHHHCCC-TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred CHHHHHHHHHhcCCC-CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence 344555666666654 889999999999999999998876567999999999999888642 1257999
Q ss_pred EEcCCCCCCCCC--CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 162 VEGDAEDLPFPT--DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 162 ~~~d~~~~~~~~--~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+++|+.++++.+ ..||+|+++..+ +.++....|.+++++|||||+|++.+...+
T Consensus 237 i~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 237 ERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp EECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred EECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 999999887654 469999998766 467778899999999999999999866544
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.63 E-value=9e-16 Score=136.73 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=102.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.+|||||||+|.++..+++..++.+|+|+|+|+.+++.++++. .++.+..+|+.++++.+++||+|++..+..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~-- 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPFSDTSMDAIIRIYAPC-- 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSBCTTCEEEEEEESCCC--
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--CCcEEEEcchhhCCCCCCceeEEEEeCChh--
Confidence 3678999999999999999999887889999999999999999886 468899999999888888999999876532
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.++++.++|||||++++..+......... ...+........ ..+..+||++++...+.
T Consensus 160 -----~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~gf~~~~~~~~~ 217 (269)
T 1p91_A 160 -----KAEELARVVKPGGWVITATPGPRHLMELK--GLIYNEVHLHAP--HAEQLEGFTLQQSAELC 217 (269)
T ss_dssp -----CHHHHHHHEEEEEEEEEEEECTTTTHHHH--TTTCSSCCCCCC--CCCCCTTEEEEEEEEEE
T ss_pred -----hHHHHHHhcCCCcEEEEEEcCHHHHHHHH--HHhhcccccccc--hhhHhcCCcEEEEEEEE
Confidence 58999999999999999877654322111 111111100000 24567899998887765
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=125.79 Aligned_cols=134 Identities=24% Similarity=0.302 Sum_probs=107.1
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL 169 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~ 169 (337)
..+.+...++..... .++.+|||+|||+|.++..+++ ++.+++|+|+|+.+++.++++.. ..+++++.+|+.+
T Consensus 19 ~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~- 94 (183)
T 2yxd_A 19 TKEEIRAVSIGKLNL-NKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED- 94 (183)
T ss_dssp CCHHHHHHHHHHHCC-CTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-
T ss_pred CHHHHHHHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-
Confidence 345555555555554 3678999999999999999988 58899999999999999998742 2468999999976
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
++++++||+|++..+ .+...+++++.++ |||.+++..+... +..++.+.++++||.+.
T Consensus 95 ~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~----------------~~~~~~~~l~~~g~~~~ 152 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE----------------NAAKIINEFESRGYNVD 152 (183)
T ss_dssp HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH----------------HHHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc----------------cHHHHHHHHHHcCCeEE
Confidence 666678999999888 6778999999999 9999999875321 24668889999998766
Q ss_pred EEE
Q 019684 250 QLK 252 (337)
Q Consensus 250 ~~~ 252 (337)
.+.
T Consensus 153 ~~~ 155 (183)
T 2yxd_A 153 AVN 155 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=132.38 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=99.4
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCC---CCCCCCCc
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAED---LPFPTDYA 176 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~---~~~~~~~f 176 (337)
++...+ .++.+|||+|||+|.++..+++.+ |..+|+|+|+|+.+++.+.+++.. .+++++.+|+.+ +++.+++|
T Consensus 70 l~~~~~-~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 70 VDQIHI-KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CSCCCC-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCE
T ss_pred HheecC-CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcE
Confidence 334444 368899999999999999999986 568999999998866655544322 679999999976 34556789
Q ss_pred cEEEecccccccCCH-HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 177 DRYVSAGSIEYWPDP-QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 177 D~i~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
|+|++... .++. ..++.++.++|||||++++..... ........... + .++ .++|+++||++++...+.
T Consensus 149 D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~-~~~~~~~~~~~----~-~~~-~~~l~~~Gf~~~~~~~~~ 218 (233)
T 2ipx_A 149 DVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKAN-CIDSTASAEAV----F-ASE-VKKMQQENMKPQEQLTLE 218 (233)
T ss_dssp EEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHH-HHCSSSCHHHH----H-HHH-HHTTGGGTEEEEEEEECT
T ss_pred EEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEccc-ccccCCCHHHH----H-HHH-HHHHHHCCCceEEEEecC
Confidence 99998544 2333 456889999999999999853210 00000000000 1 122 588999999999877765
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=138.61 Aligned_cols=134 Identities=19% Similarity=0.270 Sum_probs=103.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCCCCC--CCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAEDLPF--PTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~~~--~~~~fD~i~ 180 (337)
++.+|||||||+|.++..+++..+..+|+++|+|+.+++.++++. ..++++++.+|+.+... .+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 678999999999999999998766789999999999999999876 23679999999866443 467899999
Q ss_pred ecccccccCCH----HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 181 SAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 181 ~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+.....+.+.. ..+++++.++|||||++++...... .. ....+.+.+.|+++||..+......
T Consensus 175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~---~~---------~~~~~~~~~~l~~~GF~~v~~~~~~ 241 (304)
T 3bwc_A 175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW---LD---------LELIEKMSRFIRETGFASVQYALMH 241 (304)
T ss_dssp EECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT---TC---------HHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc---cc---------hHHHHHHHHHHHhCCCCcEEEEEee
Confidence 97666554433 5899999999999999998754310 00 0135678889999999988887654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=134.99 Aligned_cols=139 Identities=18% Similarity=0.120 Sum_probs=102.1
Q ss_pred CCCEEEEEcCcc--cHHHHHH-HhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC------CCCCCcc
Q 019684 110 RNMLVVDVGGGT--GFTTLGI-VKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP------FPTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~--G~~~~~l-~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~------~~~~~fD 177 (337)
...+|||||||+ +..+..+ .+..|+.+|+++|.|+.|++.|++++.. .+++|+++|+.+++ ...+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 346899999997 3344444 4456899999999999999999988653 35899999998752 1134466
Q ss_pred -----EEEecccccccCC---HHHHHHHHHHhccCCCEEEEEcCCCCch-hHhhhhhhhh------ccCCCHHHHHHHHH
Q 019684 178 -----RYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACIIGPVYPTF-WLSRYFADVW------MLFPKEEEYIEWFQ 242 (337)
Q Consensus 178 -----~i~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~l~ 242 (337)
.|+++.+|||+++ +..+++++.+.|+|||+|++.+...... .........+ ..+++.+++..+|.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~ 237 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFE 237 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhC
Confidence 6889999999988 4689999999999999999986554321 1111111111 24679999999995
Q ss_pred hCCCcEEE
Q 019684 243 KAGFKDVQ 250 (337)
Q Consensus 243 ~aGF~~v~ 250 (337)
||+.++
T Consensus 238 --Glelve 243 (277)
T 3giw_A 238 --GLELVE 243 (277)
T ss_dssp --TSEECT
T ss_pred --CCcccC
Confidence 999554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.7e-16 Score=129.63 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=87.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~~~~~fD~i~~~~~ 184 (337)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.++++... .+++++++|+.+++ +++++||+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 6789999999999999987775 456899999999999999987432 57999999997653 34678999999888
Q ss_pred cccc-CCHHHHHHHHHH--hccCCCEEEEEcCC
Q 019684 185 IEYW-PDPQRGIREAYR--VLKLGGKACIIGPV 214 (337)
Q Consensus 185 l~~~-~~~~~~l~~~~~--~LkpgG~l~i~~~~ 214 (337)
+++. .+...+++++.+ +|+|||.+++....
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 7765 667889999999 99999999997654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=131.56 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=86.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCC-C--CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDL-P--FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~-~--~~~~~fD~i~~~~ 183 (337)
++.+|||||||+|.++..+++..|+.+|+|+|+|+.+++.|+++. ...|++++.+|+.++ + +++++||.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 568999999999999999999989999999999999999998774 235799999998763 3 6788999999875
Q ss_pred cccccCCH--------HHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDP--------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...+.... ..+++++.++|||||++++.+.
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 54433222 2599999999999999998764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=127.14 Aligned_cols=134 Identities=26% Similarity=0.329 Sum_probs=105.1
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---C-CCeEEEEcCCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-KECKIVEGDAE 167 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~-~~~~~~~~d~~ 167 (337)
...+.+...++..... .++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++.. . .++.+..+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 92 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEP-GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (192)
T ss_dssp CCCHHHHHHHHHHHCC-CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred CChHHHHHHHHHhcCC-CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence 3445566666665554 378899999999999999999884 899999999999999998632 1 57899999986
Q ss_pred CCCCCC-CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 168 DLPFPT-DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 168 ~~~~~~-~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
+ ++++ ++||+|++..+++ +...+++++.++|+|||.+++...... +..++.+.+++.||
T Consensus 93 ~-~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~----------------~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 93 E-ALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILLE----------------TKFEAMECLRDLGF 152 (192)
T ss_dssp H-HHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH----------------HHHHHHHHHHHTTC
T ss_pred H-hcccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCcc----------------hHHHHHHHHHHCCC
Confidence 5 2232 4799999987765 457899999999999999998765321 24677889999999
Q ss_pred cE
Q 019684 247 KD 248 (337)
Q Consensus 247 ~~ 248 (337)
.+
T Consensus 153 ~~ 154 (192)
T 1l3i_A 153 DV 154 (192)
T ss_dssp CC
T ss_pred ce
Confidence 43
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.8e-16 Score=131.93 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=100.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC-CCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-FPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~-~~~~~fD~i~~~ 182 (337)
+++.+|||+|||+|.++..+++.+ |..+|+|+|+|+.+++.|+++... .+++++++|+.+++ +.+++||+|++.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 367899999999999999999885 457999999999999999987432 57999999997765 556789999987
Q ss_pred ccccc---------cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 183 GSIEY---------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 183 ~~l~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
..+.. ..+...+++++.++|||||++++............. ....++.+.+...+|.+.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~v~~~~~ 172 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEK--------EKVLEFLKGVDQKKFIVQRTDF 172 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHH--------HHHHHHHTTSCTTTEEEEEEEE
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHH--------HHHHHHHHhCCCCcEEEEEEEe
Confidence 65511 113357999999999999999987643211100000 0112333344556788888777
Q ss_pred cC
Q 019684 254 IG 255 (337)
Q Consensus 254 ~~ 255 (337)
+.
T Consensus 173 ~~ 174 (197)
T 3eey_A 173 IN 174 (197)
T ss_dssp TT
T ss_pred cc
Confidence 65
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-15 Score=139.40 Aligned_cols=135 Identities=15% Similarity=0.197 Sum_probs=103.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++... .+++++.+|+.+.+..+++||+|+++..+++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 6789999999999999999998 67999999999999999987543 2489999999887766688999999988887
Q ss_pred -----cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 188 -----WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 188 -----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+...+++++.++|||||.++++....... ...+..... .+..+ ++.||++++.....
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~--~~~l~~~f~------~v~~l-~~~gF~Vl~a~~~~ 374 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKY--EPLLEEKFG------AFQTL-KVAEYKVLFAEKRG 374 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCH--HHHHHHHHS------CCEEE-EESSSEEEEEECC-
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCCh--HHHHHHhhc------cEEEE-eCCCEEEEEEEEec
Confidence 3445689999999999999999986543321 111111111 11123 77888888777654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-16 Score=137.41 Aligned_cols=144 Identities=21% Similarity=0.129 Sum_probs=92.5
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------CCeEEEE-cCCCCCCCCC
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVE-GDAEDLPFPT 173 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~-~d~~~~~~~~ 173 (337)
.+.......++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.++++... .++.+.. .|+..
T Consensus 28 ~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~----- 101 (232)
T 3opn_A 28 ALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ----- 101 (232)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-----
T ss_pred HHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-----
Confidence 3444444446789999999999999999988 335999999999999998876431 1222222 22222
Q ss_pred CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhh-hh------hhhhccCCCHHHHHHHHHhCCC
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSR-YF------ADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~l~~aGF 246 (337)
..||.+.+..++.++ ..+++++.++|||||++++.. .+.+.... .. .+......+.+++.++++++||
T Consensus 102 ~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf 176 (232)
T 3opn_A 102 GRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGF 176 (232)
T ss_dssp CCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTE
T ss_pred CCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCC
Confidence 123444433333333 679999999999999998863 11111000 00 0111112367899999999999
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
+++.+....
T Consensus 177 ~v~~~~~~p 185 (232)
T 3opn_A 177 SVKGLTFSP 185 (232)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEEcc
Confidence 988887654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-15 Score=134.75 Aligned_cols=125 Identities=22% Similarity=0.239 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC--eEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+ +++..+|+.+ ++++++||+|+++...+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHH
Confidence 36889999999999999998887 4499999999999999998753322 7889988865 24467899999876554
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+ ...++.++.++|||||++++.+.... +.+++.+.++++||++++....+
T Consensus 196 ~---~~~~l~~~~~~LkpgG~lils~~~~~----------------~~~~v~~~l~~~Gf~~~~~~~~~ 245 (254)
T 2nxc_A 196 L---HAALAPRYREALVPGGRALLTGILKD----------------RAPLVREAMAGAGFRPLEEAAEG 245 (254)
T ss_dssp H---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHHTTCEEEEEEEET
T ss_pred H---HHHHHHHHHHHcCCCCEEEEEeeccC----------------CHHHHHHHHHHCCCEEEEEeccC
Confidence 3 46799999999999999999754321 36788999999999998887654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=135.90 Aligned_cols=148 Identities=17% Similarity=0.137 Sum_probs=99.5
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEE-EEcCCCCCC---CCCCCcc
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI-VEGDAEDLP---FPTDYAD 177 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~d~~~~~---~~~~~fD 177 (337)
+....+..++.+|||||||||.++..+++. +..+|+|+|+|+.|++.+.++. +++.. ...|+..+. ++..+||
T Consensus 77 l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~--~rv~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 77 LAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD--DRVRSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC--TTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred HHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--cccceecccCceecchhhCCCCCCC
Confidence 444444446789999999999999998887 4569999999999999865432 23322 233443332 3344699
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEE-cCCCCc--hhHhh--hhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII-GPVYPT--FWLSR--YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+|++..+++++ ..++.++.++|||||.+++. .+.+.. ..... ...+...+....+++.++++++||.+..+.
T Consensus 154 ~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 154 FASIDVSFISL---NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp EEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 99998877654 67999999999999999886 211110 00000 000111122357889999999999988877
Q ss_pred EcC
Q 019684 253 RIG 255 (337)
Q Consensus 253 ~~~ 255 (337)
...
T Consensus 231 ~sp 233 (291)
T 3hp7_A 231 FSP 233 (291)
T ss_dssp ECS
T ss_pred ECC
Confidence 654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=136.47 Aligned_cols=143 Identities=20% Similarity=0.166 Sum_probs=111.7
Q ss_pred HhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHH
Q 019684 66 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 145 (337)
Q Consensus 66 ~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~ 145 (337)
+.++..+..+||+....+....+.+++.++.+.+.++...... ++.+|||+|||+|.++..++.. |+.+|+|+|+|+.
T Consensus 80 p~~yi~g~~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~-~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~ 157 (284)
T 1nv8_A 80 PLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY-GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSK 157 (284)
T ss_dssp CHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH-TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHH
T ss_pred CCeEEeeeeEECCeEEEeCCCceecChhHHHHHHHHHHHhccc-CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHH
Confidence 4555666666777777667778888999999888887765432 5679999999999999999999 8999999999999
Q ss_pred HHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCc---cEEEec------------ccccccCC--------HHHHHHHH
Q 019684 146 QLAKAKQKEPL----KECKIVEGDAEDLPFPTDYA---DRYVSA------------GSIEYWPD--------PQRGIREA 198 (337)
Q Consensus 146 ~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~f---D~i~~~------------~~l~~~~~--------~~~~l~~~ 198 (337)
+++.|+++... .+++++++|+.+ ++. ++| |+|+++ .+. |.+. ...+++++
T Consensus 158 al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i 234 (284)
T 1nv8_A 158 AVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREF 234 (284)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHH
Confidence 99999987432 349999999976 232 468 999996 222 3322 22789999
Q ss_pred H-HhccCCCEEEEEcC
Q 019684 199 Y-RVLKLGGKACIIGP 213 (337)
Q Consensus 199 ~-~~LkpgG~l~i~~~ 213 (337)
. +.|+|||++++...
T Consensus 235 ~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 235 FGRYDTSGKIVLMEIG 250 (284)
T ss_dssp HHHCCCTTCEEEEECC
T ss_pred HHhcCCCCCEEEEEEC
Confidence 9 99999999998643
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=129.79 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=105.3
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCC
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~ 175 (337)
++..+.. .++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.|+++... .+++++.+|+.+. +++++
T Consensus 104 i~~~~~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 181 (277)
T 1o54_A 104 IAMMLDV-KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKD 181 (277)
T ss_dssp HHHHTTC-CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCS
T ss_pred HHHHhCC-CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCc
Confidence 3333444 37889999999999999999998 4678999999999999999987421 4689999999765 55678
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
||+|++ +.+++..+++++.++|+|||++++..+... ..+++.+.|+++||..++....
T Consensus 182 ~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----------------~~~~~~~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 182 VDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN----------------QVQETLKKLQELPFIRIEVWES 239 (277)
T ss_dssp EEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHSSEEEEEEECC
T ss_pred cCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCceeEEEEE
Confidence 999997 457778999999999999999999875321 1345677888999998887654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=131.97 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=102.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCC--CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP--FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~--~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|+++.. ..+++++++|+.+.+ +++++||+|+++-
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 578999999999999999999854 499999999999999998743 246999999997765 4567899999964
Q ss_pred ccccc--------------------CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHh
Q 019684 184 SIEYW--------------------PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK 243 (337)
Q Consensus 184 ~l~~~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (337)
.+... .+...+++++.++|||||+++++.+. ....++.+.+++
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------~~~~~~~~~l~~ 190 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP-----------------ERLLDIIDIMRK 190 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-----------------TTHHHHHHHHHH
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-----------------HHHHHHHHHHHH
Confidence 44322 12357999999999999999986432 245678889999
Q ss_pred CCCcEEEEEEcCc
Q 019684 244 AGFKDVQLKRIGP 256 (337)
Q Consensus 244 aGF~~v~~~~~~~ 256 (337)
.||....+..+.+
T Consensus 191 ~~~~~~~~~~v~~ 203 (259)
T 3lpm_A 191 YRLEPKRIQFVHP 203 (259)
T ss_dssp TTEEEEEEEEEES
T ss_pred CCCceEEEEEeec
Confidence 9999988877643
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=141.47 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=99.6
Q ss_pred HHHhhhhhHhhhc--ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHH
Q 019684 74 FWFYRFLSIVYDH--VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151 (337)
Q Consensus 74 ~~~y~~~~~~y~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~ 151 (337)
..||+.++..|.+ ++.....+..+...++..... .++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+
T Consensus 26 ~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~-~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~ 102 (376)
T 3r0q_C 26 AQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHH-FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHAR 102 (376)
T ss_dssp --CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTT-TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHH
T ss_pred HHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhcccc-CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHH
Confidence 3455555555543 333333445555555555444 37899999999999999999988 33499999999 9999998
Q ss_pred hhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccccccc---CCHHHHHHHHHHhccCCCEEEEE
Q 019684 152 QKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 152 ~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
++.. ..+++++++|+++++++ ++||+|++..+.+++ .+...+++++.++|||||.+++.
T Consensus 103 ~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 103 ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 7643 24589999999888776 779999996655444 55778999999999999999764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=129.20 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=106.7
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeC-CHHHHHHHHhhC-----CC--------CCe
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ-SPHQLAKAKQKE-----PL--------KEC 159 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~-s~~~~~~a~~~~-----~~--------~~~ 159 (337)
++.+.+.+...... .++.+|||+|||+|.++..++.. +..+|+++|+ |+.+++.++++. .. .++
T Consensus 64 ~~~l~~~l~~~~~~-~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v 141 (281)
T 3bzb_A 64 ARALADTLCWQPEL-IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP 141 (281)
T ss_dssp HHHHHHHHHHCGGG-TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred HHHHHHHHHhcchh-cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence 44455555544433 26789999999999999988886 3349999999 899999999876 32 257
Q ss_pred EEEEcCCCCCC--C----CCCCccEEEecccccccCCHHHHHHHHHHhcc---C--CCEEEEEcCCCCchhHhhhhhhhh
Q 019684 160 KIVEGDAEDLP--F----PTDYADRYVSAGSIEYWPDPQRGIREAYRVLK---L--GGKACIIGPVYPTFWLSRYFADVW 228 (337)
Q Consensus 160 ~~~~~d~~~~~--~----~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~ 228 (337)
++...|..+.. + .+++||+|++..+++|.++...+++.+.++|+ | ||.+++.........
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~--------- 212 (281)
T 3bzb_A 142 KVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHL--------- 212 (281)
T ss_dssp EEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------------
T ss_pred EEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeeccc---------
Confidence 77766654321 1 35689999999999999999999999999999 9 998876532211100
Q ss_pred ccCCCHHHHHHHHHhCC-CcEEEEEEc
Q 019684 229 MLFPKEEEYIEWFQKAG-FKDVQLKRI 254 (337)
Q Consensus 229 ~~~~~~~~~~~~l~~aG-F~~v~~~~~ 254 (337)
......+.+.++++| |++..+...
T Consensus 213 --~~~~~~~~~~l~~~G~f~v~~~~~~ 237 (281)
T 3bzb_A 213 --AERDLAFFRLVNADGALIAEPWLSP 237 (281)
T ss_dssp -----CTHHHHHHHHSTTEEEEEEECC
T ss_pred --chhHHHHHHHHHhcCCEEEEEeccc
Confidence 012356677899999 998877543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-14 Score=123.05 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhC-CCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~ 183 (337)
.++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++...+.+ ...|+.++.+|+.... ...++||+|++..
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence 488999999999999999999874 4679999999998864332221 1268999999997532 1246799999875
Q ss_pred cccccCCHHHHH-HHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 184 SIEYWPDPQRGI-REAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 184 ~l~~~~~~~~~l-~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
.. ++...++ ..+.+.|||||++++........ .....-...++..+.|+++||++++...+.+
T Consensus 155 a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d-------~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p 218 (232)
T 3id6_C 155 AQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSID-------VTKDPKEIYKTEVEKLENSNFETIQIINLDP 218 (232)
T ss_dssp CC---TTHHHHHHHHHHHHEEEEEEEEEEEC--------------CCSSSSTTHHHHHHHHTTEEEEEEEECTT
T ss_pred CC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcc-------cCCCHHHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 43 5555554 55666999999999873211100 0000011224566788899999999988864
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-15 Score=138.19 Aligned_cols=110 Identities=24% Similarity=0.285 Sum_probs=89.4
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~ 172 (337)
+...+...... .++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++.. ..+++++.+|+.+++++
T Consensus 52 ~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (340)
T 2fyt_A 52 YRDFIYQNPHI-FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP 128 (340)
T ss_dssp HHHHHHHCGGG-TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS
T ss_pred HHHHHHhhhhh-cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC
Confidence 33444444333 37889999999999999999887 446999999996 8999887642 25799999999998888
Q ss_pred CCCccEEEecc---cccccCCHHHHHHHHHHhccCCCEEE
Q 019684 173 TDYADRYVSAG---SIEYWPDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 173 ~~~fD~i~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~ 209 (337)
+++||+|++.. .+.+..+...++.++.++|||||.++
T Consensus 129 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 129 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 78899999876 45566677889999999999999987
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=129.34 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=106.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDL 169 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~ 169 (337)
....++..+.. .++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.|+++.. ..+++++.+|+.+.
T Consensus 87 ~~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 87 DAAQIVHEGDI-FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHcCC-CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 34444555554 37889999999999999999986 357899999999999999998742 35799999999887
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHh-CCCcE
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQK-AGFKD 248 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aGF~~ 248 (337)
++++++||+|++ +.+++..+++++.++|+|||++++..+.... ..++.+.+++ .||..
T Consensus 166 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~----------------~~~~~~~l~~~~~f~~ 224 (280)
T 1i9g_A 166 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ----------------LSRIVEALRAKQCWTE 224 (280)
T ss_dssp CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHH----------------HHHHHHHHHHHSSBCC
T ss_pred CCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHH----------------HHHHHHHHHhcCCcCC
Confidence 777788999997 4567889999999999999999998764211 2344455666 89987
Q ss_pred EEEEEc
Q 019684 249 VQLKRI 254 (337)
Q Consensus 249 v~~~~~ 254 (337)
++....
T Consensus 225 ~~~~~~ 230 (280)
T 1i9g_A 225 PRAWET 230 (280)
T ss_dssp CEEECC
T ss_pred cEEEEE
Confidence 766554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=124.17 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=92.3
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~ 171 (337)
..+...++..+.. .++.+|||||||+|.++..+++. +.+|+++|+|+.+++.++++.. ..+++++.+|+.+.+.
T Consensus 63 ~~~~~~~~~~l~~-~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 139 (210)
T 3lbf_A 63 PYMVARMTELLEL-TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ 139 (210)
T ss_dssp HHHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred HHHHHHHHHhcCC-CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc
Confidence 3344444555544 37899999999999999999998 7899999999999999998742 2479999999977666
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.+++||+|++..+++|+++ ++.++|||||++++....
T Consensus 140 ~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 140 ARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred cCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 6778999999999999986 589999999999997654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=140.37 Aligned_cols=133 Identities=18% Similarity=0.120 Sum_probs=99.5
Q ss_pred hHHHhhhhhHhhhcccCC-CcchHHHHHHhccccCCCCCCCEEEEEcCc------ccHHHHHHHhh-CCCCeEEEEeCCH
Q 019684 73 AFWFYRFLSIVYDHVINP-GHWTEDMRDDALEPADLSNRNMLVVDVGGG------TGFTTLGIVKH-VDAKNVTILDQSP 144 (337)
Q Consensus 73 ~~~~y~~~~~~y~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG------~G~~~~~l~~~-~~~~~v~gvD~s~ 144 (337)
.+..++..+..|...... .++...+.+..+.... .++.+||||||| +|..+..+++. +|+.+|+|+|+|+
T Consensus 180 ~~~~fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp 257 (419)
T 3sso_A 180 RKPDLSELSSRYFTPKFGFLHWFTPHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMD 257 (419)
T ss_dssp CCCCHHHHHHHTTCTTBSSSCBCHHHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCccHHHHHHHhCCCcccccchHHHHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 344566677777543332 3344445555555443 357899999999 66666666654 5889999999999
Q ss_pred HHHHHHHhhCCCCCeEEEEcCCCCCCCC------CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 145 HQLAKAKQKEPLKECKIVEGDAEDLPFP------TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~d~~~~~~~------~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.|. ....+++|+++|+.++++. +++||+|++.. .+++.+....|++++++|||||++++.+..
T Consensus 258 ~m~------~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 258 KSH------VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CGG------GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred HHh------hcCCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 973 1336899999999998776 68899999864 466778889999999999999999998654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-15 Score=138.92 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=85.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS- 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~- 184 (337)
++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++.. ..+++++.+|++++++++++||+|++..+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 6899999999999999999988 55699999999 49998887642 24499999999998888889999999765
Q ss_pred --ccccCCHHHHHHHHHHhccCCCEEEE
Q 019684 185 --IEYWPDPQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 185 --l~~~~~~~~~l~~~~~~LkpgG~l~i 210 (337)
+.+..+...+++++.++|||||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 44457888999999999999999874
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-15 Score=122.04 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~i 179 (337)
.++.+|||+|||+|.++..+++.+ ++.+++|+|+|+ +++. .+++++.+|+.+.+ +++++||+|
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i 92 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------VGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------CcEEEEEcccccchhhhhhhccCCCCceeEE
Confidence 478899999999999999999885 568999999998 6432 57899999998866 667789999
Q ss_pred EecccccccCCH-----------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 180 VSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 180 ~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
++...+++..+. ..+++++.++|+|||.+++...... +...+.+.+++. |..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~~~~-~~~ 155 (180)
T 1ej0_A 93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE----------------GFDEYLREIRSL-FTK 155 (180)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST----------------THHHHHHHHHHH-EEE
T ss_pred EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC----------------cHHHHHHHHHHh-hhh
Confidence 999988887776 6899999999999999998765433 234555666664 776
Q ss_pred EEEEE
Q 019684 249 VQLKR 253 (337)
Q Consensus 249 v~~~~ 253 (337)
+++..
T Consensus 156 ~~~~~ 160 (180)
T 1ej0_A 156 VKVRK 160 (180)
T ss_dssp EEEEC
T ss_pred EEeec
Confidence 66553
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-16 Score=128.52 Aligned_cols=138 Identities=11% Similarity=-0.090 Sum_probs=98.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC--eEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+..+|||+|||+|.++..++...|+.+|+++|+|+.|++.+++++...+ .++...|.... .+.++||+|++..++|+
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHh
Confidence 6789999999999999999999899999999999999999998854221 13333666443 34577999999999999
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+++.+..+.++.+.|+|||.++-...-.-.... ..+. -.-.+.|.+.+ ...+.+++...++
T Consensus 128 L~~~~~al~~v~~~L~pggvfISfptksl~Gr~-~gm~-----~~Y~~~~~~~~-~~~~~~~~~~~~~ 188 (200)
T 3fzg_A 128 LKQQDVNILDFLQLFHTQNFVISFPIKSLSGKE-KGME-----ENYQLWFESFT-KGWIKILDSKVIG 188 (200)
T ss_dssp HHHTTCCHHHHHHTCEEEEEEEEEECCCCC--C-TTCC-----CCHHHHHHHHT-TTTSCEEEEEEET
T ss_pred hhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCC-cchh-----hhHHHHHHHhc-cCcceeeeeeeeC
Confidence 966667788999999999998765411100000 0000 01134455555 5667777777665
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=128.36 Aligned_cols=126 Identities=19% Similarity=0.154 Sum_probs=99.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
+++.+|||+|||+|.++..+++..+. +|+|+|+|+.+++.|++++. .++++++++|+.+++. +++||+|++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 36899999999999999999998433 79999999999999998743 2348999999988765 678999998533
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
.+...++.++.++|||||++++.+....... .-...+.+.+.++++||+...
T Consensus 202 ----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM----------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT----------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc----------cccHHHHHHHHHHHcCCeeEE
Confidence 3446789999999999999999765432110 012457788999999998766
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-14 Score=121.62 Aligned_cols=143 Identities=17% Similarity=0.077 Sum_probs=100.5
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCC---CCCCCc
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP---FPTDYA 176 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~---~~~~~f 176 (337)
+....+ .++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.+++++.. .+++++.+|+.+.. ...++|
T Consensus 66 l~~~~~-~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (227)
T 1g8a_A 66 LKNFPI-KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCC-CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred HHhcCC-CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCc
Confidence 343334 378899999999999999999875 457999999999999988877543 57999999997632 123579
Q ss_pred cEEEecccccccCCHH-HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 177 DRYVSAGSIEYWPDPQ-RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
|+|++... .++.. .+++++.++|||||++++.... .......... ....+++.++ +++ |++++...+.
T Consensus 145 D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~-----~~~~~~l~~l-~~~-f~~~~~~~~~ 213 (227)
T 1g8a_A 145 DVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKS-RSIDVTKEPE-----QVFREVEREL-SEY-FEVIERLNLE 213 (227)
T ss_dssp EEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEG-GGTCTTSCHH-----HHHHHHHHHH-HTT-SEEEEEEECT
T ss_pred eEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEec-CCCCCCCChh-----hhhHHHHHHH-Hhh-ceeeeEeccC
Confidence 99997654 33443 4599999999999999987211 1000000000 0124566666 777 9999888875
Q ss_pred c
Q 019684 256 P 256 (337)
Q Consensus 256 ~ 256 (337)
+
T Consensus 214 ~ 214 (227)
T 1g8a_A 214 P 214 (227)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=126.17 Aligned_cols=128 Identities=18% Similarity=0.242 Sum_probs=100.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---C----CeEEEEcCCCCC-------CCCCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---K----ECKIVEGDAEDL-------PFPTDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~----~~~~~~~d~~~~-------~~~~~~ 175 (337)
++.+|||+|||+|.++..++...|+.+|+|+|+++.+++.|+++... . +++++++|+.+. .+.+++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 67899999999999999999998888999999999999999998764 2 489999999876 255678
Q ss_pred ccEEEeccccccc------------------CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHH
Q 019684 176 ADRYVSAGSIEYW------------------PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEY 237 (337)
Q Consensus 176 fD~i~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
||+|+++-.+... .+...+++++.++|||||+++++.+.. ...++
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------~~~~~ 178 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ-----------------SVAEI 178 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG-----------------GHHHH
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH-----------------HHHHH
Confidence 9999997332211 235789999999999999999864321 23456
Q ss_pred HHHHHhCCCcEEEEEEcC
Q 019684 238 IEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 238 ~~~l~~aGF~~v~~~~~~ 255 (337)
.+.+++. |..+.+..+.
T Consensus 179 ~~~l~~~-~~~~~i~~v~ 195 (260)
T 2ozv_A 179 IAACGSR-FGGLEITLIH 195 (260)
T ss_dssp HHHHTTT-EEEEEEEEEE
T ss_pred HHHHHhc-CCceEEEEEc
Confidence 6777775 8877776654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=124.44 Aligned_cols=111 Identities=21% Similarity=0.173 Sum_probs=90.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC-CeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-ECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~d~~~~~~~~ 173 (337)
..+...++..+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.... +++++.+|+.+....+
T Consensus 56 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 56 LNLGIFMLDELDL-HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEE 132 (231)
T ss_dssp HHHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGG
T ss_pred HHHHHHHHHhcCC-CCCCEEEEEcCCCCHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccC
Confidence 3444455555544 37889999999999999999998 489999999999999999886533 7999999997633345
Q ss_pred CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
++||+|++..+++|+. .++.++|+|||++++....
T Consensus 133 ~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECS
T ss_pred CCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcC
Confidence 7899999999999887 3689999999999998654
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=122.75 Aligned_cols=127 Identities=9% Similarity=0.046 Sum_probs=103.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
+++.+|||||||+|.+++.++...+..+|+++|+++.+++.|+++.. ..++++..+|..+...+++.||+|+..++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 47889999999999999999998667799999999999999998743 24699999999775544447999987655
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
... -...++.+..+.|+++|+|+++... ..+.++++|.++||.+++..-+.
T Consensus 100 Gg~--lI~~IL~~~~~~l~~~~~lIlqp~~------------------~~~~lr~~L~~~Gf~i~~E~lv~ 150 (230)
T 3lec_A 100 GGR--LIADILNNDIDKLQHVKTLVLQPNN------------------REDDLRKWLAANDFEIVAEDILT 150 (230)
T ss_dssp CHH--HHHHHHHHTGGGGTTCCEEEEEESS------------------CHHHHHHHHHHTTEEEEEEEEEE
T ss_pred chH--HHHHHHHHHHHHhCcCCEEEEECCC------------------ChHHHHHHHHHCCCEEEEEEEEE
Confidence 431 2357888999999999999887532 35788999999999998887653
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-15 Score=126.87 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=86.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CCCC-----CCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPFP-----TDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~~-----~~~fD~ 178 (337)
++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++.. ..+++++.+|+.+ ++.. .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 578999999999999999999764 7899999999999999998643 2459999999844 3322 268999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
|++....++..+....+..+ ++|||||++++.+...
T Consensus 138 V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 138 VFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 99988887776666788888 9999999998876653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-15 Score=134.88 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=86.8
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC--------------CCCeEEEEcC
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------------LKECKIVEGD 165 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~--------------~~~~~~~~~d 165 (337)
++..+.. .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++.. ..+++++.+|
T Consensus 97 ~l~~l~~-~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 97 ILSMMDI-NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHHTC-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 3333444 378999999999999999999874 55899999999999999998743 2579999999
Q ss_pred CCCC--CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh-Hhhhhhh----------------
Q 019684 166 AEDL--PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSRYFAD---------------- 226 (337)
Q Consensus 166 ~~~~--~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~---------------- 226 (337)
+.+. ++++++||+|++. .+++..+++++.++|+|||.+++..+...... ....+..
T Consensus 176 ~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 250 (336)
T 2b25_A 176 ISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVR 250 (336)
T ss_dssp TTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCCCC
T ss_pred hHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEEeccc
Confidence 9775 4566789999984 34555689999999999999998776433211 1111111
Q ss_pred hhccC---CCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 227 VWMLF---PKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 227 ~~~~~---~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
.|... ....++.+.|+++||+++++....
T Consensus 251 ~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~ 282 (336)
T 2b25_A 251 DWLVCLAKQKNGILAQKVESKINTDVQLDSQE 282 (336)
T ss_dssp CEEECC--------------------------
T ss_pred ceEEEeecccccchhhhhcccccccccccccc
Confidence 11111 111278899999999999887764
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=126.95 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=94.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhh----CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC---CCCC-CCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL---PFPT-DYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~---~~~~-~~fD~i~~ 181 (337)
++.+|||||||+|..+..+++. .++.+|+|+|+|+.+++.|+.. ..+++++++|+.+. +..+ .+||+|++
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~--~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--MENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--CTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc--CCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 4679999999999999999987 5789999999999999888732 26799999999874 4333 47999998
Q ss_pred cccccccCCHHHHHHHHHH-hccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhC--CCcE
Q 019684 182 AGSIEYWPDPQRGIREAYR-VLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA--GFKD 248 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~-~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--GF~~ 248 (337)
... | .+...++.++.+ +|||||++++.+.. .. +. -.+.+.+.++++++ +|+.
T Consensus 159 d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~~--~~---------~~-~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 159 DNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDMI--PY---------WY-RYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp ESS--C-SSHHHHHHHHHHHTCCTTCEEEECSCH--HH---------HH-HHCHHHHHHHHHTTTTTEEE
T ss_pred CCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeCc--cc---------cc-ccCHHHHHHHHHhCcccEEE
Confidence 665 3 377889999997 99999999997651 00 00 01345788888888 5764
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-14 Score=131.30 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=112.0
Q ss_pred CCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEc
Q 019684 89 NPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KECKIVEG 164 (337)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~ 164 (337)
.+.+..+.+...++...... ++.+|||+|||+|.+++.++... +..+++|+|+|+.+++.|++++.. .+++++++
T Consensus 183 ~~a~l~~~la~~l~~~~~~~-~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~ 261 (354)
T 3tma_A 183 LRGSLTPVLAQALLRLADAR-PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRA 261 (354)
T ss_dssp SSCSCCHHHHHHHHHHTTCC-TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEEC
T ss_pred CCCCcCHHHHHHHHHHhCCC-CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeC
Confidence 34455666777777666653 77899999999999999999986 678999999999999999987532 26899999
Q ss_pred CCCCCCCCCCCccEEEecccccccC--------CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHH
Q 019684 165 DAEDLPFPTDYADRYVSAGSIEYWP--------DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEE 236 (337)
Q Consensus 165 d~~~~~~~~~~fD~i~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
|+.+++.+.+.||+|+++-...... ....+++++.++|||||.+++..+. .+.
T Consensus 262 D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~-------------------~~~ 322 (354)
T 3tma_A 262 DARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR-------------------PAL 322 (354)
T ss_dssp CGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC-------------------HHH
T ss_pred ChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC-------------------HHH
Confidence 9998877677799999965443221 1257899999999999999998652 334
Q ss_pred HHHHHHhCCCcEEEEEEc
Q 019684 237 YIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 237 ~~~~l~~aGF~~v~~~~~ 254 (337)
+.+.++ .||+..+...+
T Consensus 323 ~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 323 LKRALP-PGFALRHARVV 339 (354)
T ss_dssp HHHHCC-TTEEEEEEEEC
T ss_pred HHHHhh-cCcEEEEEEEE
Confidence 455556 89988776665
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=120.21 Aligned_cols=118 Identities=13% Similarity=0.184 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC--CCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----------------
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---------------- 170 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---------------- 170 (337)
+++.+|||+|||+|.++..+++.++ +.+|+|+|+|+.. ...+++++++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~ 92 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNN 92 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------CCTTCEEEECCTTTTSSCCC-----------C
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------CCCCceEEEccccchhhhhhccccccccccch
Confidence 4778999999999999999999887 6899999999831 2257899999998765
Q ss_pred ---------CCCCCccEEEecccccccC----CHH-------HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhcc
Q 019684 171 ---------FPTDYADRYVSAGSIEYWP----DPQ-------RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML 230 (337)
Q Consensus 171 ---------~~~~~fD~i~~~~~l~~~~----~~~-------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 230 (337)
+++++||+|++..++++.. +.. .+++++.++|||||.+++......
T Consensus 93 ~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~-------------- 158 (201)
T 2plw_A 93 SVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS-------------- 158 (201)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--------------
T ss_pred hhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC--------------
Confidence 4567899999988776542 221 378999999999999988543221
Q ss_pred CCCHHHHHHHHHhCCCcEEEE
Q 019684 231 FPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 231 ~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+..++...++. .|..+..
T Consensus 159 --~~~~l~~~l~~-~f~~v~~ 176 (201)
T 2plw_A 159 --QTNNLKTYLKG-MFQLVHT 176 (201)
T ss_dssp --THHHHHHHHHT-TEEEEEE
T ss_pred --CHHHHHHHHHH-HHheEEE
Confidence 23455566655 4765554
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-14 Score=120.60 Aligned_cols=125 Identities=15% Similarity=0.159 Sum_probs=100.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~i~~~~ 183 (337)
+++.+|||||||+|.+++.++...|..+|+++|+++.+++.|++++. ..++++..+|..+ ++. .+.||+|+...
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG 92 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAG 92 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcC
Confidence 47889999999999999999998777899999999999999998753 2468999999854 332 22699998765
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
+-.. -...++.+..+.|+|+|++++.... ..+.++++|.+.||.+++..-+
T Consensus 93 ~Gg~--~i~~Il~~~~~~L~~~~~lVlq~~~------------------~~~~vr~~L~~~Gf~i~~e~lv 143 (225)
T 3kr9_A 93 MGGR--LIARILEEGLGKLANVERLILQPNN------------------REDDLRIWLQDHGFQIVAESIL 143 (225)
T ss_dssp ECHH--HHHHHHHHTGGGCTTCCEEEEEESS------------------CHHHHHHHHHHTTEEEEEEEEE
T ss_pred CChH--HHHHHHHHHHHHhCCCCEEEEECCC------------------CHHHHHHHHHHCCCEEEEEEEE
Confidence 4331 1467999999999999999886442 3577889999999999887654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=122.69 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=101.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
+++.+|||||||+|.+++.++...+..+|+++|+++.+++.|++++. ..++++..+|..+...++.+||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 47889999999999999999998667799999999999999998843 24589999999765444446999987554
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.. .-...++.+..+.|+++|+|++.... ..+.++++|.+.||.+++...+
T Consensus 100 Gg--~lI~~IL~~~~~~L~~~~~lIlq~~~------------------~~~~lr~~L~~~Gf~i~~E~lv 149 (244)
T 3gnl_A 100 GG--TLIRTILEEGAAKLAGVTKLILQPNI------------------AAWQLREWSEQNNWLITSEAIL 149 (244)
T ss_dssp CH--HHHHHHHHHTGGGGTTCCEEEEEESS------------------CHHHHHHHHHHHTEEEEEEEEE
T ss_pred ch--HHHHHHHHHHHHHhCCCCEEEEEcCC------------------ChHHHHHHHHHCCCEEEEEEEE
Confidence 43 12357899999999999999987532 3578899999999998877655
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-14 Score=132.85 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=86.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------CCeEEEEcCCCCCCCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIVEGDAEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.++++... .+++++.+|+.+ ++++++||+|+++.
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNP 300 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECC
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECC
Confidence 55899999999999999999998899999999999999999987542 248889999977 55677899999998
Q ss_pred cccccCC-----HHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 184 SIEYWPD-----PQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 184 ~l~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
.+++... ..++++++.++|||||+++++....
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 8875322 2368999999999999999976443
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=133.74 Aligned_cols=121 Identities=11% Similarity=0.089 Sum_probs=93.5
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHH-------HhhC---C--CCCeEE
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-------KQKE---P--LKECKI 161 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a-------~~~~---~--~~~~~~ 161 (337)
...+...++..+.. .++.+|||||||+|.++..+++..+..+|+|+|+++.+++.| ++++ . ..++++
T Consensus 227 ~p~~v~~ml~~l~l-~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 227 LPNFLSDVYQQCQL-KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp CHHHHHHHHHHTTC-CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred cHHHHHHHHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 34555666666655 378999999999999999999986667899999999998888 6553 2 257899
Q ss_pred EEcCCCCC--CC--CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 162 VEGDAEDL--PF--PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 162 ~~~d~~~~--~~--~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
+++|.... ++ ..++||+|+++.++ +.++....++++.++|||||++++.++..+
T Consensus 306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 306 SLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred EEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 98765321 22 24679999988766 456777899999999999999999865443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-15 Score=123.13 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=83.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC-CCCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LPFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~-~~~~~~~fD~i~~~~~ 184 (337)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++... .+++++.+|+.+ ++..+++||+|++...
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 6789999999999999999887 557999999999999999987533 358999999866 3434467999999866
Q ss_pred ccccCCHHHHHHHHH--HhccCCCEEEEEcCC
Q 019684 185 IEYWPDPQRGIREAY--RVLKLGGKACIIGPV 214 (337)
Q Consensus 185 l~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~ 214 (337)
++ .......++.+. ++|+|||.+++....
T Consensus 110 ~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 110 YA-KETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SH-HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CC-cchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 53 234566777777 999999999997654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=122.17 Aligned_cols=121 Identities=9% Similarity=0.026 Sum_probs=90.9
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~ 168 (337)
..+.+...+++.+....++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++... .+++++.+|+.+
T Consensus 27 ~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 27 TTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 105 (187)
T ss_dssp CCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence 344444444444322136789999999999999988875 457999999999999999987532 468999999865
Q ss_pred CC----CCCCCccEEEecccccccCCHHHHHHHH--HHhccCCCEEEEEcCCC
Q 019684 169 LP----FPTDYADRYVSAGSIEYWPDPQRGIREA--YRVLKLGGKACIIGPVY 215 (337)
Q Consensus 169 ~~----~~~~~fD~i~~~~~l~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~~ 215 (337)
.. ..+++||+|++...++ ..+....++.+ .++|+|||.+++..+..
T Consensus 106 ~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 106 ALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 21 2257899999987743 55667788888 88999999999876543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-14 Score=123.91 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=83.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-----------CCCCeEEEEcCCCC-CC--CCCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----------PLKECKIVEGDAED-LP--FPTDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~~~d~~~-~~--~~~~~ 175 (337)
++.+|||||||+|.++..++...|..+|+|+|+|+.+++.++++. ...++.++.+|+.+ ++ +.+++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 678999999999999999999988889999999999999988653 22579999999976 55 66788
Q ss_pred ccEEEecccccccCCH-------------HHHHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSAGSIEYWPDP-------------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~-------------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|.|+... +++ ..+++++.++|+|||.|++...
T Consensus 129 ~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 129 LSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 99998543 333 4799999999999999998643
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-14 Score=128.04 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=90.9
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCC
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~ 171 (337)
.....++..+.. .++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++.. ..+++++.+|+.+.+.
T Consensus 62 ~~~~~l~~~l~~-~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~ 140 (317)
T 1dl5_A 62 SLMALFMEWVGL-DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (317)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred HHHHHHHHhcCC-CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc
Confidence 344455555554 3789999999999999999998855 3679999999999999998742 2469999999977554
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+++||+|++..+++|+. +++.++|||||++++...
T Consensus 141 ~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 141 EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 567899999999999987 578899999999999754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=126.15 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=84.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhh--CCCCeEEEEeCCHHHHHHHHhhCCCC-------C----------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKH--VDAKNVTILDQSPHQLAKAKQKEPLK-------E---------------------- 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~-------~---------------------- 158 (337)
++.+|||+|||+|.++..+++. .++.+|+|+|+|+.+++.|+++.... +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999987 56789999999999999999764333 1
Q ss_pred ---eE-------------EEEcCCCCCCC-----CCCCccEEEecccccccCC---------HHHHHHHHHHhccCCCEE
Q 019684 159 ---CK-------------IVEGDAEDLPF-----PTDYADRYVSAGSIEYWPD---------PQRGIREAYRVLKLGGKA 208 (337)
Q Consensus 159 ---~~-------------~~~~d~~~~~~-----~~~~fD~i~~~~~l~~~~~---------~~~~l~~~~~~LkpgG~l 208 (337)
++ ++++|+.+... ..++||+|+++..+.+..+ ...+++++.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 56 99999976321 3447999999876665543 348999999999999999
Q ss_pred EEEcCC
Q 019684 209 CIIGPV 214 (337)
Q Consensus 209 ~i~~~~ 214 (337)
+++...
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 986443
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-14 Score=127.47 Aligned_cols=130 Identities=14% Similarity=0.099 Sum_probs=98.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEec--
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSA-- 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~-- 182 (337)
.++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++.. ..+++++++|+.+++..+++||+|++.
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 4788999999999999999998864 4899999999999999998752 247899999998766545679999983
Q ss_pred ----ccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHH
Q 019684 183 ----GSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (337)
Q Consensus 183 ----~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (337)
.++.+.++. ..+++++.++|||||++++++...... .+.+.+...++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~-------------Ene~~v~~~l~ 263 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE-------------ENEFVIQWALD 263 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-------------GTHHHHHHHHH
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH-------------HhHHHHHHHHh
Confidence 233333321 478999999999999999987654321 13455677888
Q ss_pred hCCCcEEEE
Q 019684 243 KAGFKDVQL 251 (337)
Q Consensus 243 ~aGF~~v~~ 251 (337)
+.||+.+.+
T Consensus 264 ~~~~~~~~~ 272 (315)
T 1ixk_A 264 NFDVELLPL 272 (315)
T ss_dssp HSSEEEECC
T ss_pred cCCCEEecC
Confidence 899887654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=121.17 Aligned_cols=112 Identities=23% Similarity=0.233 Sum_probs=89.2
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCC
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~ 171 (337)
.+...++..+.. .++.+|||||||+|.++..+++.. +..+|+++|+|+.+++.++++.. ..+++++.+|+.....
T Consensus 64 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 64 HMVGMMCELLDL-KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG
T ss_pred HHHHHHHHhhCC-CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 344444444444 478899999999999999999985 44899999999999999998642 2468999999854322
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.+++||+|++..+++|++ +++.++|||||++++....
T Consensus 143 ~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred CCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 356899999999999887 4789999999999987653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-15 Score=126.73 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=83.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---C--CCeEEEEcCCCCCC--CCCCC-ccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L--KECKIVEGDAEDLP--FPTDY-ADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~--~~~~~~~~d~~~~~--~~~~~-fD~i~~ 181 (337)
++.+|||+|||+|.++..++.. ...+|+|+|+|+.+++.|+++.. . .+++++.+|+.+.. ..+++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 5689999999999999987776 24699999999999999998742 1 47899999986542 23678 999999
Q ss_pred cccccccCCHHHHHHHH--HHhccCCCEEEEEcCC
Q 019684 182 AGSIEYWPDPQRGIREA--YRVLKLGGKACIIGPV 214 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~ 214 (337)
...++ ..+...+++.+ .++|+|||.+++....
T Consensus 132 ~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH-FNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 87754 56667888998 6689999999987654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=120.78 Aligned_cols=130 Identities=16% Similarity=0.165 Sum_probs=101.4
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCC
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~ 175 (337)
.++..... .++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ..++++..+|+.+....+++
T Consensus 82 ~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLNL-NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcCC-CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 34444444 37889999999999999999998 7899999999999999998742 25789999999774435668
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
||+|++ +.+++..+++++.++|+|||++++..+... ...++.+.+++. |..++....
T Consensus 159 ~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~l~~~-f~~~~~~~~ 215 (248)
T 2yvl_A 159 FHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPTAN----------------QVIKLLESIENY-FGNLEVVEI 215 (248)
T ss_dssp BSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESSHH----------------HHHHHHHHSTTT-EEEEEEEEE
T ss_pred ccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHhh-CCcceEEEe
Confidence 999997 456778899999999999999999876421 123455666667 887776554
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-14 Score=128.06 Aligned_cols=99 Identities=26% Similarity=0.292 Sum_probs=83.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS- 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~- 184 (337)
++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++.. ..+++++.+|++++++++++||+|++..+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 6789999999999999998887 45699999999 58888887632 24699999999988887788999999744
Q ss_pred --ccccCCHHHHHHHHHHhccCCCEEEE
Q 019684 185 --IEYWPDPQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 185 --l~~~~~~~~~l~~~~~~LkpgG~l~i 210 (337)
+.+..+...++.++.++|||||.++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 44556678999999999999999973
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=121.60 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=85.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CCCC--CCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LPFP--TDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~~--~~~fD~i~~ 181 (337)
++.+|||||||+|..+..+++.+| +.+|+++|+|+.+++.|+++.. ..+++++.+|+.+ ++.. .++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 678999999999999999999987 7899999999999999998742 2479999999855 3322 348999998
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
... ..+...+++++.++|||||++++.+....
T Consensus 143 d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 143 DAD---KPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp CSC---GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred CCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 653 44567899999999999999998766543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-14 Score=122.70 Aligned_cols=102 Identities=11% Similarity=0.020 Sum_probs=83.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC-CCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED-LPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~-~~~~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++... .+++++++|+.+ ++..+++||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 56899999999999999877762 35999999999999999987532 478999999865 45556789999998764
Q ss_pred cccCCHHHHHHHHHH--hccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYR--VLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 213 (337)
+..+...+++.+.+ +|+|||.+++...
T Consensus 133 -~~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 133 -RRGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp -STTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -CCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 35677788888876 5999999998754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=130.27 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=89.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~ 170 (337)
..+...++...... ++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++.. ..+++++.+|+++++
T Consensus 36 ~~y~~~i~~~l~~~-~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 112 (348)
T 2y1w_A 36 GTYQRAILQNHTDF-KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS 112 (348)
T ss_dssp HHHHHHHHHTGGGT-TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred HHHHHHHHhccccC-CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC
Confidence 33445555554443 7889999999999999998886 557999999996 8888876632 257999999998877
Q ss_pred CCCCCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~ 211 (337)
++ ++||+|++..+++|+.+ ....+.++.++|||||.+++.
T Consensus 113 ~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 113 LP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 65 56999999988888753 457888999999999999854
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=119.66 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=86.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC-C-CCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-FPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~~~~~fD~i~~~~ 183 (337)
++.+|||||||+|..+..+++..++.+|+++|+|+.+++.|+++.. ..+++++.+|+.+. + ..+++||+|++..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 6789999999999999999997778999999999999999998742 24799999999663 3 3367899999764
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
. ..+...+++++.++|||||++++.+...
T Consensus 151 ~---~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 151 A---KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp T---SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred c---HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 3 4567789999999999999998865543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.6e-14 Score=121.72 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=89.6
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----C-CCeEEEEcCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----L-KECKIVEGDA 166 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~-~~~~~~~~d~ 166 (337)
....+...+...... .++.+|||||||+|..+..+++.++ +.+|+++|+|+.+++.|+++.. . .+++++.+|+
T Consensus 40 ~~~~~l~~l~~~~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda 118 (221)
T 3dr5_A 40 MTGQLLTTLAATTNG-NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP 118 (221)
T ss_dssp HHHHHHHHHHHHSCC-TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred HHHHHHHHHHHhhCC-CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence 344444444433322 1345999999999999999999764 7899999999999999998743 2 4799999998
Q ss_pred CCC-C-CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 167 EDL-P-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 167 ~~~-~-~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.+. + +.+++||+|++... ..+...+++++.++|||||++++.+..
T Consensus 119 ~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 119 LDVMSRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp HHHGGGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred HHHHHHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 553 2 33678999998653 345677999999999999999986544
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-14 Score=137.11 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=90.4
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~ 168 (337)
.++.+...++...... ++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++.. ..+++++.+|+.+
T Consensus 142 ~t~~~~~~il~~l~~~-~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 142 RTGTYQRAILQNHTDF-KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHHHHHHTGGGT-TTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred hHHHHHHHHHHhhhhc-CCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 3445555555555433 6789999999999999998875 667999999998 8888887632 2579999999988
Q ss_pred CCCCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEE
Q 019684 169 LPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 169 ~~~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i 210 (337)
++++ ++||+|++..+++|+.+. ...+.++.++|||||.+++
T Consensus 219 ~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 219 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred CccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 7655 479999998887877654 4677889999999999985
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-15 Score=134.00 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=105.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+++ .+++||+|++...+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 6789999999999999999997 68999999999999999987432 47899999997765 56789999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh---hhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD---VWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
++..+....+.++.++|+|||.+++... ...... ......+.+++..++...|...++.....
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~~~~-------~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~~ 220 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIFRLS-------KKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLN 220 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHHHHH-------HHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEEET
T ss_pred CCcchhhhHHHHHHhhcCCcceeHHHHH-------HhhCCceEEECCCCCCHHHHHHHhccCCCEEEEehhhc
Confidence 9988777788889999999999654321 000000 00123467888888888887776665554
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-14 Score=120.34 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=82.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--CeEEEEcCCCCC-C-C--CCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDL-P-F--PTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~-~-~--~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... +++++++|+.+. + . .+++||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 6789999999999999999988 456999999999999999864321 689999998652 2 1 124799999987
Q ss_pred cccccCCHHHHHHHHH--HhccCCCEEEEEcCCCC
Q 019684 184 SIEYWPDPQRGIREAY--RVLKLGGKACIIGPVYP 216 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~~ 216 (337)
.++ .+....++.+. ++|+|||.+++......
T Consensus 119 ~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 765 55567777777 99999999998765443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=119.30 Aligned_cols=103 Identities=11% Similarity=0.176 Sum_probs=87.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC-CCC--CCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-PFP--TDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~~~--~~~fD~i~~~ 182 (337)
++.+|||||||+|..+..+++..|+.+|+++|+|+.+++.|+++.. ..+++++.+|+.+. +.. +++||+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 6789999999999999999999888999999999999999998742 24699999998663 332 5689999987
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
...+ +...+++++.++|+|||++++.+...
T Consensus 134 ~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 134 AAKG---QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp GGGS---CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCHH---HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 6643 77899999999999999999986543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=118.02 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC--------CCCeEEEEcCCCCCCCCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDLPFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~i 179 (337)
.++.+|||||||+|..+..+++.. +..+|+++|+|+.+++.++++.. ..+++++.+|+...+..+++||+|
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 155 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 155 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence 478899999999999999999874 44799999999999999987643 247999999997665556789999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
++...++++. +++.++|||||++++....
T Consensus 156 ~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 156 HVGAAAPVVP------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred EECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence 9998887664 5789999999999997543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-14 Score=130.77 Aligned_cols=104 Identities=21% Similarity=0.260 Sum_probs=87.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++... .+.+++.+|+.+.+ +++||+|+++..+++
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFHD 273 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCCS
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCccc
Confidence 46799999999999999999997778999999999999999987532 23678888986643 568999999998875
Q ss_pred -----cCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 188 -----WPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 188 -----~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
..+...+++++.++|||||.+++.....
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 2345789999999999999999986543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=125.68 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=108.4
Q ss_pred CcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCC
Q 019684 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDA 166 (337)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~ 166 (337)
.+..+.+...++... . .++.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++++.. .+++++++|+
T Consensus 200 a~l~~~la~~l~~~~-~-~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~ 277 (373)
T 3tm4_A 200 AHLKASIANAMIELA-E-LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA 277 (373)
T ss_dssp TCCCHHHHHHHHHHH-T-CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCG
T ss_pred CCccHHHHHHHHHhh-c-CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence 344566666666665 3 478999999999999999999985445999999999999999988532 4689999999
Q ss_pred CCCCCCCCCccEEEeccccccc----CC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHH
Q 019684 167 EDLPFPTDYADRYVSAGSIEYW----PD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238 (337)
Q Consensus 167 ~~~~~~~~~fD~i~~~~~l~~~----~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
.+++.++++||+|+++-.+... .. ...+++++.++| ||.+++... +.+.+.
T Consensus 278 ~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------------~~~~~~ 336 (373)
T 3tm4_A 278 TQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------------EKKAIE 336 (373)
T ss_dssp GGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------------CHHHHH
T ss_pred hhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------------CHHHHH
Confidence 9988877889999996554322 11 256888899988 555555433 456778
Q ss_pred HHHHhCCCcEEEEEEcC
Q 019684 239 EWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 239 ~~l~~aGF~~v~~~~~~ 255 (337)
+.+++.||+..+...+.
T Consensus 337 ~~~~~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 337 EAIAENGFEIIHHRVIG 353 (373)
T ss_dssp HHHHHTTEEEEEEEEEE
T ss_pred HHHHHcCCEEEEEEEEE
Confidence 89999999988876653
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-13 Score=113.27 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=87.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.++++.. +++++++|+.+++ ++||+|+++..+++..
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~ 124 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG--GVNFMVADVSEIS---GKYDTWIMNPPFGSVV 124 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT--TSEEEECCGGGCC---CCEEEEEECCCC----
T ss_pred CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC--CCEEEECcHHHCC---CCeeEEEECCCchhcc
Confidence 6789999999999999999887 44589999999999999999876 7899999998865 5799999999998886
Q ss_pred CH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 190 DP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 190 ~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
+. ..+++++.+++ |+ +++.... . +...+.+.++++| +...+.
T Consensus 125 ~~~~~~~l~~~~~~~--g~-~~~~~~~---~--------------~~~~~~~~~~~~g-~~~~~~ 168 (200)
T 1ne2_A 125 KHSDRAFIDKAFETS--MW-IYSIGNA---K--------------ARDFLRREFSARG-DVFREE 168 (200)
T ss_dssp ---CHHHHHHHHHHE--EE-EEEEEEG---G--------------GHHHHHHHHHHHE-EEEEEE
T ss_pred CchhHHHHHHHHHhc--Cc-EEEEEcC---c--------------hHHHHHHHHHHCC-CEEEEE
Confidence 52 47899999998 44 4443211 0 2345677888888 554443
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=118.60 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-----CCCeEEEEeCCHHHHHHHHhhCC--------CCCeEEEEcCCCCCC----C
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDLP----F 171 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~----~ 171 (337)
.++.+|||||||+|.++..+++.. |..+|+++|+++.+++.|+++.. ..+++++.+|+.+.. .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 478899999999999999999885 34699999999999999998742 357999999997754 4
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+++||+|++...++++. +++.++|||||++++...
T Consensus 159 ~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASASELP------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBSSCC------HHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEc
Confidence 567899999999888753 788999999999998754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-14 Score=140.86 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=87.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~--~~~~~~fD~i~~~~~ 184 (337)
.+.+|||||||.|.++..|++. |++|+|||+|+.+++.|+.++.. .+++|.+++++++ .+.+++||+|++..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 5689999999999999999998 89999999999999999987532 3589999999886 456778999999999
Q ss_pred ccccCCHHH--HHHHHHHhccCCCEEEEEcCCC
Q 019684 185 IEYWPDPQR--GIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 185 l~~~~~~~~--~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
++|++|+.. .+..+.+.|+++|..++.....
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 999998863 3556778888888877765443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=118.46 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=84.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCC-CCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL-PFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~-~~~~~~fD~i~~~~ 183 (337)
++.+|||||||+|..+..+++..+ +.+|+++|+|+.+++.|+++... .+++++.+|+.+. +..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 568999999999999999999877 78999999999999999976432 3589999998543 44456 99999873
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
...+...+++++.++|||||.+++.+...
T Consensus 135 ---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 135 ---DVFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp ---TTSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred ---ChhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 24577899999999999999999876543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=118.27 Aligned_cols=111 Identities=26% Similarity=0.364 Sum_probs=88.1
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~ 171 (337)
..+...++..+.. .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.++++.. ..+++++.+|+. .++
T Consensus 77 ~~~~~~~~~~l~~-~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~ 153 (235)
T 1jg1_A 77 PHMVAIMLEIANL-KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KGF 153 (235)
T ss_dssp HHHHHHHHHHHTC-CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GCC
T ss_pred HHHHHHHHHhcCC-CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cCC
Confidence 3444555555544 3778999999999999999999865 899999999999999998742 246899999973 244
Q ss_pred CC-CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 172 PT-DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 172 ~~-~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
++ ..||+|++..+++++.+ ++.+.|+|||++++....
T Consensus 154 ~~~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 154 PPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp GGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECS
T ss_pred CCCCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEec
Confidence 33 35999999999988763 789999999999997654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-14 Score=128.85 Aligned_cols=122 Identities=21% Similarity=0.223 Sum_probs=91.0
Q ss_pred hcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----CCCCeE
Q 019684 85 DHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECK 160 (337)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~ 160 (337)
..++.....+..+...+....... ++++|||||||+|.++..+++. +..+|+|||.|+ +++.|+++. ...+++
T Consensus 59 ~~ML~D~~Rt~aY~~Ai~~~~~~~-~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~ 135 (376)
T 4hc4_A 59 EEMIADRVRTDAYRLGILRNWAAL-RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGLEDRVH 135 (376)
T ss_dssp HHHHHCHHHHHHHHHHHHTTHHHH-TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCTTTEE
T ss_pred HHHhCCHHHHHHHHHHHHhCHHhc-CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCCCceEE
Confidence 334444444555555555433332 6899999999999999877766 446899999986 677777543 335699
Q ss_pred EEEcCCCCCCCCCCCccEEEe---cccccccCCHHHHHHHHHHhccCCCEEEE
Q 019684 161 IVEGDAEDLPFPTDYADRYVS---AGSIEYWPDPQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 161 ~~~~d~~~~~~~~~~fD~i~~---~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 210 (337)
++.+|++++.++ ++||+|++ ...+.+......++....+.|||||.++-
T Consensus 136 ~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 136 VLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp EEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred EEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 999999988776 46999998 45555666778899999999999999863
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=118.82 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC------CCeEEEEeCCHHHHHHHHhhCC--------CCCeEEEEcCCCCCCCCC-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD------AKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDLPFPT- 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~------~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~- 173 (337)
.++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.++++.. ..+++++.+|+.+ ++++
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 161 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPN 161 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGG
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcC
Confidence 4788999999999999999988653 2599999999999999997743 2579999999976 3433
Q ss_pred CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
++||+|++...++++. +++.+.|||||++++...
T Consensus 162 ~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 6899999999998876 678999999999998754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-13 Score=112.23 Aligned_cols=98 Identities=21% Similarity=0.147 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC---------CeEEEEeCCHHHHHHHHhhCCCCCeEEE-EcCCCCCC--------
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA---------KNVTILDQSPHQLAKAKQKEPLKECKIV-EGDAEDLP-------- 170 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~---------~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~d~~~~~-------- 170 (337)
.++.+|||+|||+|.++..+++..+. .+|+|+|+|+.. ...+++++ .+|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------PLEGATFLCPADVTDPRTSQRILEV 92 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------CCTTCEEECSCCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------cCCCCeEEEeccCCCHHHHHHHHHh
Confidence 47899999999999999999998754 799999999832 12468888 88986643
Q ss_pred CCCCCccEEEecccccc----cCCH-------HHHHHHHHHhccCCCEEEEEcCC
Q 019684 171 FPTDYADRYVSAGSIEY----WPDP-------QRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~----~~~~-------~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+++++||+|++...++. ..+. ..+++++.++|||||++++....
T Consensus 93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 33567999999665443 2233 47899999999999999987653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=127.03 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=81.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----C-CeEEEEcCCCCCCC----CCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----K-ECKIVEGDAEDLPF----PTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~-~~~~~~~d~~~~~~----~~~~fD~i~ 180 (337)
++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|+++... . +++++++|+.+... .+++||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 6789999999999999999987 56999999999999999987431 2 48999999866421 146799999
Q ss_pred eccc----------ccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 181 SAGS----------IEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 181 ~~~~----------l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+.-- .++..+...+++++.++|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 8422 223345678999999999999998776544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=116.48 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=84.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC-C-CC---CCCccEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-FP---TDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~~---~~~fD~i 179 (337)
++.+|||||||+|..+..+++.+| +.+|+++|+++.+++.++++.. .++++++.+|+.+. + +. .++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 678999999999999999999987 7899999999999999997642 24599999998542 2 11 1579999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
++... ..+...+++++.++|+|||.+++.+....
T Consensus 138 ~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 138 FIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EECSC---GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 98755 33556899999999999999988766543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=121.53 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=83.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCC--CCCCCCccEEEeccccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL--PFPTDYADRYVSAGSIE 186 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~--~~~~~~fD~i~~~~~l~ 186 (337)
.+|||||||+|..+..+++.+|+.+++++|+++.+++.|+++.. .++++++.+|+.+. ...+++||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 49999999999999999998889999999999999999999865 35799999998653 23467899999864333
Q ss_pred ccCC----HHHHHHHHHHhccCCCEEEEEcC
Q 019684 187 YWPD----PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 187 ~~~~----~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.... ...++++++++|+|||++++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 2111 25899999999999999988654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-12 Score=120.31 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=97.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCC-CCC-CCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAED-LPF-PTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~-~~~-~~~~fD~i~~~~~ 184 (337)
++.+|||+| |+|.++..++...+..+|+++|+|+.+++.|+++... .+++++.+|+.+ ++. .+++||+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 578999999 9999999999886667999999999999999987431 279999999987 663 3568999999866
Q ss_pred ccccCCHHHHHHHHHHhccCCCEE-EEEcCCCCchhHhhhhhhhhccCCCH---HHHHHHHH-hCCCcEEEEEE
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKA-CIIGPVYPTFWLSRYFADVWMLFPKE---EEYIEWFQ-KAGFKDVQLKR 253 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l-~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~-~aGF~~v~~~~ 253 (337)
++.. ....+++++.++|||||++ ++...... .+. ..+.+.++ +.||.......
T Consensus 251 ~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~g~~~~~~~~ 308 (373)
T 2qm3_A 251 ETLE-AIRAFVGRGIATLKGPRCAGYFGITRRE---------------SSLDKWREIQKLLLNEFNVVITDIIR 308 (373)
T ss_dssp SSHH-HHHHHHHHHHHTBCSTTCEEEEEECTTT---------------CCHHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred CchH-HHHHHHHHHHHHcccCCeEEEEEEecCc---------------CCHHHHHHHHHHHHHhcCcchhhhhh
Confidence 5433 2578999999999999954 44322101 123 45667777 89998765543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=117.32 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=84.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC-C-CCC----CCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-FPT----DYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~~~----~~fD~ 178 (337)
++.+|||||||+|..+..+++.+| +.+|+++|+|+.+++.++++.. .++++++++|+.+. + ... ++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 578999999999999999999887 7899999999999999998742 24599999998542 2 111 68999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
|++... ..+...+++++.++|||||++++.+....
T Consensus 144 v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 144 IYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 996553 34567899999999999999999876543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.2e-13 Score=111.40 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-------C----CCc
Q 019684 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-------T----DYA 176 (337)
Q Consensus 108 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-------~----~~f 176 (337)
.+++.+|||+|||+|.++..+++. +.+|+|+|+++.. ...+++++++|+.+.+.. . ++|
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~--------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME--------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKV 92 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC--------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc--------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence 357899999999999999999988 7899999998742 225799999999875421 1 389
Q ss_pred cEEEecccccccC----C-------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC
Q 019684 177 DRYVSAGSIEYWP----D-------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 177 D~i~~~~~l~~~~----~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 245 (337)
|+|++........ | ...+++.+.++|||||.+++....... ..++...++. .
T Consensus 93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~----------------~~~~~~~l~~-~ 155 (191)
T 3dou_A 93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM----------------TNDFIAIWRK-N 155 (191)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH----------------HHHHHHHHGG-G
T ss_pred eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC----------------HHHHHHHHHH-h
Confidence 9999965332211 1 136789999999999999876543221 2345555644 5
Q ss_pred CcEEEEEE
Q 019684 246 FKDVQLKR 253 (337)
Q Consensus 246 F~~v~~~~ 253 (337)
|..+++..
T Consensus 156 F~~v~~~k 163 (191)
T 3dou_A 156 FSSYKISK 163 (191)
T ss_dssp EEEEEEEC
T ss_pred cCEEEEEC
Confidence 77666544
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=122.53 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=83.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCCC-C-CCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDL-P-FPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~-~~~~~fD~i~ 180 (337)
++.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++.. .++++++.+|+.+. + ..+++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 5689999999999999999988777899999999999999998763 35799999998553 2 3456899999
Q ss_pred ecccccc-c-CC--HHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEY-W-PD--PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~-~-~~--~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+...... . .+ ...+++++.++|+|||++++..
T Consensus 200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 8644211 1 11 3689999999999999999863
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-12 Score=122.18 Aligned_cols=129 Identities=20% Similarity=0.220 Sum_probs=100.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCC--CCCCCccEEEe-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLP--FPTDYADRYVS- 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~--~~~~~fD~i~~- 181 (337)
.++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.++++. ...++.++++|+.+++ +.+++||+|++
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 47889999999999999999998766 89999999999999998874 2347899999998765 55578999996
Q ss_pred -----cccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHH
Q 019684 182 -----AGSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240 (337)
Q Consensus 182 -----~~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (337)
..++++.++. ..+++++.++|||||++++++...... .+.+.+...
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~-------------ene~~v~~~ 404 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE-------------ENEKNIRWF 404 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-------------GTHHHHHHH
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------------hHHHHHHHH
Confidence 3444444443 468999999999999999987654321 134556677
Q ss_pred HHhC-CCcEEE
Q 019684 241 FQKA-GFKDVQ 250 (337)
Q Consensus 241 l~~a-GF~~v~ 250 (337)
+++. ||+.+.
T Consensus 405 l~~~~~~~~~~ 415 (450)
T 2yxl_A 405 LNVHPEFKLVP 415 (450)
T ss_dssp HHHCSSCEECC
T ss_pred HHhCCCCEEee
Confidence 7776 787543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=118.40 Aligned_cols=132 Identities=14% Similarity=0.019 Sum_probs=94.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++.. .++++++.+|+.+ ++..+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 5689999999999999999988677899999999999999998762 3679999999854 3334567999998
Q ss_pred cccccccC-----CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 182 AGSIEYWP-----DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 182 ~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
...-.+.. ....+++++.++|+|||.+++...... .. .. ....+.+.+++. |..+.....
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~-~~-~~----------~~~~~~~~l~~~-F~~v~~~~~ 234 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF-YD-IG----------WFKLAYRRISKV-FPITRVYLG 234 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT-TT-HH----------HHHHHHHHHHHH-CSEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcc-cC-HH----------HHHHHHHHHHHH-CCceEEEEe
Confidence 53321021 126899999999999999998743211 00 00 123455566666 777666543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.6e-13 Score=118.34 Aligned_cols=132 Identities=16% Similarity=0.042 Sum_probs=98.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++. ..++++++.+|+.+ ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998766789999999999999999875 23679999999854 3334578999999
Q ss_pred cccccccCC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.......+. ...+++++.++|+|||.+++....... . .. ....+.+.+++. |..+.....
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~-~-~~----------~~~~~~~~l~~~-F~~v~~~~~ 218 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF-T-PE----------LITNVQRDVKEI-FPITKLYTA 218 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTT-C-HH----------HHHHHHHHHHTT-CSEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc-c-HH----------HHHHHHHHHHHh-CCCeEEEEE
Confidence 654322221 257999999999999999987432110 0 00 124455677777 877776554
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-13 Score=122.31 Aligned_cols=132 Identities=20% Similarity=0.144 Sum_probs=97.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--------CCCeEEEEcCCCC-CCCCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAED-LPFPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~-~~~~~~~fD~i~ 180 (337)
++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.. .++++++.+|+.+ ++..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 5689999999999999999998677899999999999999998753 3679999999865 333467899999
Q ss_pred ecccccc---cCC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 181 SAGSIEY---WPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 181 ~~~~l~~---~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
+....+. .+. ...+++++.++|+|||.+++......... ......+.+.+++. |..+....
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~-----------~~~~~~~~~~l~~~-F~~v~~~~ 224 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTH-----------HRVHPVVHRTVREA-FRYVRSYK 224 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC--------------CHHHHHHHHHHTT-CSEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccC-----------HHHHHHHHHHHHHH-CCceEEEE
Confidence 9765543 111 26899999999999999998632211000 01234555667766 76665543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-13 Score=121.79 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=84.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC-CCC-----CCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-PFP-----TDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~~~-----~~~fD~ 178 (337)
++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++.. ..+++++.+|+.+. +.. +++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 568999999999999999999875 7899999999999988887642 25799999998653 221 468999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
|++... ..+...+++++.++|+|||++++.+...
T Consensus 140 V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 140 IFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp EEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred EEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 998654 3456789999999999999999976554
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.9e-13 Score=122.15 Aligned_cols=103 Identities=22% Similarity=0.162 Sum_probs=83.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-------CCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------KECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++... ++++++.+|+.+ ++..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 56899999999999999999876778999999999999999998653 579999999854 2233567999998
Q ss_pred cccccccC--CH--HHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWP--DP--QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~--~~--~~~l~~~~~~LkpgG~l~i~~ 212 (337)
...-...+ +. ..+++++.++|+|||++++..
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 64321111 11 689999999999999999864
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=121.40 Aligned_cols=99 Identities=18% Similarity=0.101 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEE--EcCCCCCCCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIV--EGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~--~~d~~~~~~~~~~fD~i~~ 181 (337)
.++.+|||+|||+|.++..+++. .+|+|+|+|+ ++..++++... .++.++ ++|+.+++ +++||+|++
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC 154 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence 47889999999999999999887 5899999998 54333322111 168899 89998866 678999999
Q ss_pred cccccccCCHH-------HHHHHHHHhccCCC--EEEEEcCC
Q 019684 182 AGSIEYWPDPQ-------RGIREAYRVLKLGG--KACIIGPV 214 (337)
Q Consensus 182 ~~~l~~~~~~~-------~~l~~~~~~LkpgG--~l~i~~~~ 214 (337)
..+ ++..++. .+++++.++||||| .+++....
T Consensus 155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 877 5444431 37899999999999 88886544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-13 Score=118.06 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=84.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC-C-C-----CCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-F-----PTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~-----~~~~fD 177 (337)
++.+|||||||+|..+..+++.+| +.+|+++|+|+.+++.|+++.. ..+++++.+|+.+. + + .+++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 568999999999999999999877 7899999999999999997642 24689999998542 3 2 156899
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+|++... ..+...+++++.++|||||.+++.+..
T Consensus 159 ~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 159 FIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp EEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred EEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 9998654 346788999999999999999987644
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-13 Score=121.80 Aligned_cols=103 Identities=22% Similarity=0.193 Sum_probs=81.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++.. .++++++.+|+.+ ++..+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 5689999999999999999988777899999999999999999864 3579999999855 3334578999998
Q ss_pred cccccccCCH----HHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDP----QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~ 212 (337)
...-+..+.. ..+++++.++|+|||++++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 6532211221 578999999999999999875
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-13 Score=117.72 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCC----CCCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF----PTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~----~~~~fD~i~ 180 (337)
.++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.++++.. ..+++++.+|+.+++. .+++||+|+
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 37889999999999999999997666 899999999999999988742 2478999999876543 256799999
Q ss_pred ec------cccc------------ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHH
Q 019684 181 SA------GSIE------------YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (337)
Q Consensus 181 ~~------~~l~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (337)
+. .++. ......++++++.++|||||++++++...... .+.+.+...++
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~-------------ene~~v~~~l~ 228 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE-------------ENEEVIKYILQ 228 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT-------------SSHHHHHHHHH
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH-------------HhHHHHHHHHH
Confidence 86 2221 11345689999999999999999987654221 13445556665
Q ss_pred hC-CCcEEE
Q 019684 243 KA-GFKDVQ 250 (337)
Q Consensus 243 ~a-GF~~v~ 250 (337)
+. +|+.+.
T Consensus 229 ~~~~~~~~~ 237 (274)
T 3ajd_A 229 KRNDVELII 237 (274)
T ss_dssp HCSSEEEEC
T ss_pred hCCCcEEec
Confidence 53 565543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-13 Score=119.54 Aligned_cols=132 Identities=22% Similarity=0.174 Sum_probs=96.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|..+..+++..+..+++++|+++.+++.|+++.. .++++++.+|+.+ ++..+++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 5689999999999999999988667899999999999999999864 3679999999855 2223567999998
Q ss_pred cccccccCCH----HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 182 AGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 182 ~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
....++.+.. ..+++++.++|+|||.+++........ .. ....+.+.+++. |..+.....
T Consensus 158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~--~~----------~~~~~~~~l~~~-F~~v~~~~~ 221 (283)
T 2i7c_A 158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIH--VG----------TIKNMIGYAKKL-FKKVEYANI 221 (283)
T ss_dssp ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTC--HH----------HHHHHHHHHHTT-CSEEEEEEE
T ss_pred cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccC--HH----------HHHHHHHHHHHH-CCceEEEEE
Confidence 6543322221 589999999999999999875421100 00 123445566665 877766544
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.7e-13 Score=117.52 Aligned_cols=101 Identities=23% Similarity=0.283 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++.. .++.++.+|+.+.+. .++||+|++....
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 478899999999999999999987677999999999999999987532 468899999977643 5679999987653
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+...++.++.+.|+|||.+++....
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 5667999999999999999987654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-13 Score=121.06 Aligned_cols=99 Identities=13% Similarity=-0.003 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEE--EcCCCCCCCCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIV--EGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~--~~d~~~~~~~~~~fD~i~~ 181 (337)
.++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... .++.++ ++|+.+++ +++||+|++
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~s 146 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMC 146 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEE
Confidence 57899999999999999998887 6899999998 53333222111 168899 89998866 678999999
Q ss_pred cccccccCCHH-------HHHHHHHHhccCCC--EEEEEcCC
Q 019684 182 AGSIEYWPDPQ-------RGIREAYRVLKLGG--KACIIGPV 214 (337)
Q Consensus 182 ~~~l~~~~~~~-------~~l~~~~~~LkpgG--~l~i~~~~ 214 (337)
..+ ++..++. .+++.+.++||||| .+++....
T Consensus 147 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 147 DVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 877 5544431 37899999999999 88886544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-13 Score=120.88 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=82.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.. .++++++.+|+.+ ++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 5689999999999999999988667899999999999999998753 4679999999854 3344578999998
Q ss_pred cccccccCC----HHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
....+..+. ...+++++.++|+|||++++..
T Consensus 175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 654322211 2468999999999999999875
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.6e-13 Score=118.63 Aligned_cols=115 Identities=12% Similarity=0.015 Sum_probs=86.0
Q ss_pred CCCCEEEEEcC------cccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCCCCeEE-EEcCCCCCCCCCCCccEEE
Q 019684 109 NRNMLVVDVGG------GTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKI-VEGDAEDLPFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGc------G~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~d~~~~~~~~~~fD~i~ 180 (337)
+++.+|||+|| |+|. ..+++..+ +.+|+|+|+|+. + .++++ +++|+.++++. ++||+|+
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~~v~~~i~gD~~~~~~~-~~fD~Vv 128 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------SDADSTLIGDCATVHTA-NKWDLII 128 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------CSSSEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------CCCEEEEECccccCCcc-CcccEEE
Confidence 47899999999 4576 44555555 689999999988 1 36888 99999887654 5799999
Q ss_pred ecccccc--------c---CCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 181 SAGSIEY--------W---PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 181 ~~~~l~~--------~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+....+. . .....+++++.++|||||++++...... ..+++.+.+++.||..+
T Consensus 129 sn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~----------------~~~~l~~~l~~~GF~~v 192 (290)
T 2xyq_A 129 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------------WNADLYKLMGHFSWWTA 192 (290)
T ss_dssp ECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----------------CCHHHHHHHTTEEEEEE
T ss_pred EcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC----------------CHHHHHHHHHHcCCcEE
Confidence 9643221 1 1134799999999999999998654321 23477889999999887
Q ss_pred EEE
Q 019684 250 QLK 252 (337)
Q Consensus 250 ~~~ 252 (337)
++.
T Consensus 193 ~~~ 195 (290)
T 2xyq_A 193 FVT 195 (290)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.6e-13 Score=118.09 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=81.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------------CCCCeEEEEcCCCC-CCCCCCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------------PLKECKIVEGDAED-LPFPTDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------------~~~~~~~~~~d~~~-~~~~~~~ 175 (337)
++.+|||||||+|..+..+++. +..+|+++|+++.+++.|+++. ..++++++.+|+.+ ++. +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 5689999999999999999998 7789999999999999999886 34579999999854 222 567
Q ss_pred ccEEEecccccccC--C--HHHHHHHHHHhccCCCEEEEEc
Q 019684 176 ADRYVSAGSIEYWP--D--PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 176 fD~i~~~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
||+|++....+..+ . ...+++++.++|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999865432211 1 2578999999999999998864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=112.64 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=84.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC----CCCCC--CCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED----LPFPT--DYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~----~~~~~--~~fD~ 178 (337)
++.+|||||||+|..+..+++..+ +.+|+++|+|+.+++.|+++.. ..+++++.+|+.+ ++..+ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 568999999999999999999876 6899999999999999997642 2468999999743 22333 67999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
|++... ..+...+++++.++|+|||++++.+...
T Consensus 152 V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 998654 3456789999999999999999976543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=115.65 Aligned_cols=93 Identities=15% Similarity=-0.026 Sum_probs=80.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
.+.+|||||||+|..+..+++. + .+|+++|+++.+++.|+++.. .++++++.+|+.+.. ++||+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 5689999999999999999988 7 899999999999999998753 357999999987654 679999986
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..++..+++++.++|+|||.+++..
T Consensus 147 -----~~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 -----QEPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CCChHHHHHHHHHhcCCCcEEEEEc
Confidence 3566679999999999999999863
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=112.76 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=83.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC---C-CCeEEEEcCCCC-CC-------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---L-KECKIVEGDAED-LP------------- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~---~-~~~~~~~~d~~~-~~------------- 170 (337)
++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++.. . .+++++.+|+.+ ++
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 678999999999999999999876 6899999999999999998742 1 348999999854 22
Q ss_pred -CCC--CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 171 -FPT--DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 171 -~~~--~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+++ ++||+|++.... .+...+++++.++|+|||++++.+...
T Consensus 140 ~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp TTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 222 689999987543 355689999999999999999976543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=104.41 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=93.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--CeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++.... +++++++|+.+++ ++||+|++...+++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 6789999999999999999887 3458999999999999999886532 6899999998764 47999999887776
Q ss_pred cC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 188 WP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 188 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.. ....+++++.+++ |+ +++...... . +.+.+.+.+++.||+...+...
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~-~~~~~~~~~-~--------------~~~~~~~~l~~~g~~~~~~~~~ 175 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DV-VYSIHLAKP-E--------------VRRFIEKFSWEHGFVVTHRLTT 175 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SE-EEEEEECCH-H--------------HHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--Cc-EEEEEeCCc-C--------------CHHHHHHHHHHCCCeEEEEEEE
Confidence 64 3357889999998 44 444321111 0 2345667889999987666554
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=112.14 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=84.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC-C-CCC----CCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-FPT----DYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~~~----~~fD~ 178 (337)
++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.++++.. ..+++++.+|+.+. + +.+ ++||+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 678999999999999999999876 6899999999999999997742 25799999998542 1 111 67999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
|++... ..+...+++++.++|+|||.+++.+...
T Consensus 149 v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 149 AVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 998654 3456789999999999999999976543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-13 Score=118.72 Aligned_cols=110 Identities=25% Similarity=0.304 Sum_probs=81.0
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~ 170 (337)
..+.+.+++.+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+.+
T Consensus 14 ~~i~~~i~~~~~~~-~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~ 90 (285)
T 1zq9_A 14 PLIINSIIDKAALR-PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 90 (285)
T ss_dssp HHHHHHHHHHTCCC-TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhcCCC-CCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc
Confidence 44555566665553 7789999999999999999998 67999999999999999987542 46899999998776
Q ss_pred CCCCCccEEEecccc-----------cccCCHHHHH----HHH--HHhccCCCEEE
Q 019684 171 FPTDYADRYVSAGSI-----------EYWPDPQRGI----REA--YRVLKLGGKAC 209 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l-----------~~~~~~~~~l----~~~--~~~LkpgG~l~ 209 (337)
++ +||+|+++..+ +|.++....+ +++ +++|+|||.++
T Consensus 91 ~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 91 LP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 54 69999996433 3333221100 223 46889998863
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9.1e-12 Score=118.35 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=98.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCC--CCCCCccEEEe---
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--FPTDYADRYVS--- 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~--~~~~~fD~i~~--- 181 (337)
.++.+|||+|||+|..+..+++..++.+|+++|+|+.+++.++++... .++.++++|+.+++ +.+++||+|++
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 324 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 324 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCC
Confidence 478899999999999999999997778999999999999999887432 24789999998765 55578999996
Q ss_pred ---cccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHH
Q 019684 182 ---AGSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (337)
Q Consensus 182 ---~~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (337)
..++.+.++. ..+++++.++|||||+++++++...... +.+.+...++
T Consensus 325 csg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~e-------------ne~~v~~~l~ 391 (429)
T 1sqg_A 325 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEE-------------NSLQIKAFLQ 391 (429)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGG-------------THHHHHHHHH
T ss_pred CCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhh-------------HHHHHHHHHH
Confidence 2344444443 3789999999999999999876543211 2344556666
Q ss_pred hC-CCcEEE
Q 019684 243 KA-GFKDVQ 250 (337)
Q Consensus 243 ~a-GF~~v~ 250 (337)
+. +|+.+.
T Consensus 392 ~~~~~~~~~ 400 (429)
T 1sqg_A 392 RTADAELCE 400 (429)
T ss_dssp HCTTCEECS
T ss_pred hCCCCEEeC
Confidence 64 576543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=113.30 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=83.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCC-C-C-----CCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDL-P-F-----PTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~-----~~~~fD 177 (337)
++.+|||||||+|..+..+++..| +.+++++|+++.+++.|+++.. .++++++.+|+.+. + + .+++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 568999999999999999999876 7899999999999999997642 23689999998542 2 2 256899
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+|++... ..+...+++++.++|+|||.+++.+..
T Consensus 150 ~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 150 FGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred EEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 9998643 235678999999999999999887654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-12 Score=123.14 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=97.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-CCCCCccEEEec-
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP-FPTDYADRYVSA- 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~i~~~- 182 (337)
.++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.+++++.. . +.++++|+.+++ ..+++||+|++.
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEECC
Confidence 37899999999999999999988654 7999999999999999987532 3 888899987654 245689999962
Q ss_pred -----ccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHH
Q 019684 183 -----GSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWF 241 (337)
Q Consensus 183 -----~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (337)
.++.+.++. .++++++.++|||||+|+++++..... .+.+.+...+
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e-------------Ene~vv~~~l 245 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE-------------ENEGVVAHFL 245 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-------------GTHHHHHHHH
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh-------------cCHHHHHHHH
Confidence 223332332 578999999999999999987654322 1445666777
Q ss_pred HhC-CCcEEEEE
Q 019684 242 QKA-GFKDVQLK 252 (337)
Q Consensus 242 ~~a-GF~~v~~~ 252 (337)
++. +|+.+.+.
T Consensus 246 ~~~~~~~l~~~~ 257 (464)
T 3m6w_A 246 KAHPEFRLEDAR 257 (464)
T ss_dssp HHCTTEEEECCC
T ss_pred HHCCCcEEEecc
Confidence 776 57766543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-12 Score=116.29 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeC----CHHHHHHHH-hhCCCCCeEEEEc-CCCCCCCCCCCccEEE
Q 019684 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ----SPHQLAKAK-QKEPLKECKIVEG-DAEDLPFPTDYADRYV 180 (337)
Q Consensus 107 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~----s~~~~~~a~-~~~~~~~~~~~~~-d~~~~~~~~~~fD~i~ 180 (337)
..+++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++.+. +....+++.++++ |+.+++ .++||+|+
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~ 153 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLL 153 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEE
Confidence 3357899999999999999999887 48999999 564442211 1111246899998 887765 45799999
Q ss_pred eccccc---ccCCHH---HHHHHHHHhccCCCEEEEEcCC
Q 019684 181 SAGSIE---YWPDPQ---RGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 181 ~~~~l~---~~~~~~---~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|..+.. +..+.. .++..+.++|||||.+++....
T Consensus 154 sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 154 CDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred ECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 976653 222222 4789999999999999885443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=110.30 Aligned_cols=127 Identities=19% Similarity=0.163 Sum_probs=96.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.+|.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.+++|+. ..+++++++|+.+++. .+.||.|++...
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p 201 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC
Confidence 47999999999999999999887 45799999999999999998753 3558999999988653 457999997532
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+....++..+.++|||||++.+.+....... .-...+.+.+..++.|+++...
T Consensus 202 ----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~----------~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM----------PREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT----------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred ----CcHHHHHHHHHHHcCCCCEEEEEeeeccccc----------chhHHHHHHHHHHHcCCcEEEE
Confidence 3345688889999999999876543321110 0123567788899999986433
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=118.33 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=84.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCC-CCCCccEEEec--
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPF-PTDYADRYVSA-- 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~-~~~~fD~i~~~-- 182 (337)
++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++++. ..++.++++|+.+++. .+++||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 688999999999999999999864 4799999999999999998753 2478999999987653 45679999982
Q ss_pred ----ccccccCC----------------HHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 183 ----GSIEYWPD----------------PQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 183 ----~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
.++.+.++ ..++++++.++|||||+|++++...
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 22332222 1368999999999999999987654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-12 Score=118.82 Aligned_cols=132 Identities=14% Similarity=0.030 Sum_probs=93.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----C-CeEEEEcCCCC-CCC---CCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----K-ECKIVEGDAED-LPF---PTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~-~~~~~~~d~~~-~~~---~~~~fD~i~ 180 (337)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|++++.. . +++++++|+.+ ++. ...+||+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 6789999999999999999986 235899999999999999987431 2 78999999865 221 245799999
Q ss_pred ecccc-----cccCC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 181 SAGSI-----EYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 181 ~~~~l-----~~~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+.-.. .+..+ ..++++++.++|+|||.+++........ ... -.+.+.+.+.++|.++++.
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~~~----------~~~~i~~~~~~~g~~~~~~ 359 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQ----------FKKQIEKGFGKQKHTYLDL 359 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHH----------HHHHHHHHHTTCCCEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HHH----------HHHHHHHHHHHcCCcEEEe
Confidence 84322 22333 3467888899999999999876543211 000 0234556777889884444
Q ss_pred EE
Q 019684 252 KR 253 (337)
Q Consensus 252 ~~ 253 (337)
..
T Consensus 360 ~~ 361 (385)
T 2b78_A 360 QQ 361 (385)
T ss_dssp EC
T ss_pred CC
Confidence 33
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=107.17 Aligned_cols=133 Identities=8% Similarity=-0.017 Sum_probs=100.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+..+|||||||+|-++..+....|..+|+++|+++.+++.+++++.. .+.++...|...-+ +.+.||++++.-+++|
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence 57899999999999999999888899999999999999999988532 44788889986544 3456999999999999
Q ss_pred cCCHH--HHHHHHHHhccCCCEEEEEcC--CC-CchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 188 WPDPQ--RGIREAYRVLKLGGKACIIGP--VY-PTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 188 ~~~~~--~~l~~~~~~LkpgG~l~i~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
+++.+ ..+ ++.+.|+|+|.++-... .. ....+...+ .+.|.+.+.+.|..+.+.+-
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y---------~~~~e~~~~~~g~~~~~~~~ 271 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNY---------SQSFESQARERSCRIQRLEI 271 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHH---------HHHHHHHHHHHTCCEEEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHH---------HHHHHHHHHhcCCceeeeee
Confidence 97653 345 99999999999876544 11 111111111 36788889999995544443
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-12 Score=121.47 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=98.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC-CCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP-FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~-~~~~~fD~i~~~~ 183 (337)
.++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++++. ..++.++++|+.+++ ..+++||+|++.-
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 4789999999999999999998754 4799999999999999988743 246889999987654 2356899999732
Q ss_pred ------cccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHH
Q 019684 184 ------SIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWF 241 (337)
Q Consensus 184 ------~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (337)
++..-++. .++++++.++|||||+|+.++...... .+.+.+...+
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e-------------Ene~vv~~~l 250 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE-------------ENEEIISWLV 250 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG-------------GTHHHHHHHH
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc-------------cCHHHHHHHH
Confidence 22211111 268999999999999999987654322 1456677888
Q ss_pred HhCCCcEEEEE
Q 019684 242 QKAGFKDVQLK 252 (337)
Q Consensus 242 ~~aGF~~v~~~ 252 (337)
++.||+.+.+.
T Consensus 251 ~~~~~~l~~~~ 261 (456)
T 3m4x_A 251 ENYPVTIEEIP 261 (456)
T ss_dssp HHSSEEEECCC
T ss_pred HhCCCEEEecc
Confidence 99997766553
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-12 Score=110.71 Aligned_cols=84 Identities=17% Similarity=0.272 Sum_probs=67.4
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~ 173 (337)
..+...+++.+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.++++++
T Consensus 16 ~~~~~~i~~~~~~~-~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 16 KHNIDKIMTNIRLN-EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHHHHHTTCCCC-TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHHhCCCC-CCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence 45666666666553 7889999999999999999998 58999999999999999988643 57999999998887764
Q ss_pred -CCccEEEec
Q 019684 174 -DYADRYVSA 182 (337)
Q Consensus 174 -~~fD~i~~~ 182 (337)
..| .|+++
T Consensus 93 ~~~~-~vv~n 101 (244)
T 1qam_A 93 NQSY-KIFGN 101 (244)
T ss_dssp SCCC-EEEEE
T ss_pred CCCe-EEEEe
Confidence 345 34443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=115.19 Aligned_cols=132 Identities=15% Similarity=-0.027 Sum_probs=91.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC--eEEEEcCCCCC-CCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDL-PFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~d~~~~-~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++++...+ ..+.++|+.+. +...+.||+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 5899999999999999999987 6679999999999999998753222 35778888653 22133499999853321
Q ss_pred c---------cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 187 Y---------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 187 ~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
. ..+...+++.+.++|+|||.+++.+....... ..+ .+.+.+.+.++|.....+...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~-~~f----------~~~v~~a~~~~g~~~~i~~~~ 357 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRL-EDL----------LEVARRAAADLGRRLRVHRVT 357 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH-HHH----------HHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCH-HHH----------HHHHHHHHHHhCCeEEEEEEc
Confidence 1 12345789999999999999997765433110 000 134556677778765544443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=113.75 Aligned_cols=131 Identities=17% Similarity=0.017 Sum_probs=95.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCCCC----CCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDLPF----PTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~----~~~~fD~i~ 180 (337)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++. ..+++++.+|+.+... .+++||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 6789999999999999999987 24699999999999999998743 1278999999865421 145799999
Q ss_pred ecc---------cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 181 SAG---------SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 181 ~~~---------~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+.- +.....+...++.++.+.|+|||.+++......... .. ..+.+.+.+.++|+....+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~----------~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTS-DL----------FQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCH-HH----------HHHHHHHHHHHHTCCEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCH-HH----------HHHHHHHHHHHcCCeEEEE
Confidence 853 222335567899999999999999998765432110 00 0234556778888655444
Q ss_pred E
Q 019684 252 K 252 (337)
Q Consensus 252 ~ 252 (337)
.
T Consensus 368 ~ 368 (396)
T 3c0k_A 368 E 368 (396)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=115.45 Aligned_cols=131 Identities=19% Similarity=0.059 Sum_probs=94.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCC----CCCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPF----PTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~----~~~~fD~i~~~ 182 (337)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++.. .+++++++|+.+... .+++||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5689999999999999999988 67999999999999999987432 348999999865421 25679999984
Q ss_pred cccc---------ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 183 GSIE---------YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 183 ~~l~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
--.. ...+...++.++.++|+|||.+++......... .. -.+.+.+.+.++|.....+..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~----------~~~~i~~~~~~~g~~~~~i~~ 355 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTE-PL----------FYAMVAEAAQDAHRLLRVVEK 355 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH-HH----------HHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCH-HH----------HHHHHHHHHHHcCCeEEEEEc
Confidence 3221 113345789999999999999998865432110 00 023455677788865444433
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.7e-11 Score=101.96 Aligned_cols=100 Identities=12% Similarity=-0.095 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+|||||||+|.++..+. +..+|+|+|+|+.+++.+++++. ..+..+..+|....+.+. +||+|++.-++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHH
Confidence 367899999999999998877 68999999999999999998853 256788999997766555 799999999999
Q ss_pred ccCCHH-HHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQ-RGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~-~~l~~~~~~LkpgG~l~i~~ 212 (337)
|+.+.+ ...-++.+.|+++|.++-..
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 886543 23448888999998876554
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.2e-11 Score=108.97 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||+|||+|.++.. +. +..+|+++|+|+.+++.+++++. ..+++++++|+.+.. ++||+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 3688999999999999999 77 47899999999999999998743 246899999997765 67999998532
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhC-CCcEEEEEEc
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA-GFKDVQLKRI 254 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-GF~~v~~~~~ 254 (337)
. ....++.++.++|+|||.+++.+.... .+...+.++++ ||+++....+
T Consensus 268 ~----~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------~~~~~~~l~~~~~~~i~~~~~v 317 (336)
T 2yx1_A 268 K----FAHKFIDKALDIVEEGGVIHYYTIGKD-----------------FDKAIKLFEKKCDCEVLEKRIV 317 (336)
T ss_dssp T----TGGGGHHHHHHHEEEEEEEEEEEEESS-----------------SHHHHHHHHHHSEEEEEEEEEE
T ss_pred H----hHHHHHHHHHHHcCCCCEEEEEEeecC-----------------chHHHHHHHHhcCCcEEEEEEE
Confidence 1 123789999999999999998765433 12344455555 7776655544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-10 Score=108.30 Aligned_cols=138 Identities=19% Similarity=0.170 Sum_probs=98.2
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCC--
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAED-- 168 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~-- 168 (337)
++.+.+.+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++. ..+++|+.+|+.+
T Consensus 271 ~e~l~~~~~~~l~~-~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 271 NQKMVARALEWLDV-QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHTC-CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred HHHHHHHHHHhhcC-CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh
Confidence 45556666655544 36789999999999999999988 7899999999999999998753 2479999999976
Q ss_pred --CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 169 --LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 169 --~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
+++.+++||+|++.--.... ..+++.+.+ ++|++.++++... . +...-...|.+.||
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p---~--------------tlard~~~l~~~Gy 406 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNP---A--------------TLARDSEALLKAGY 406 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCH---H--------------HHHHHHHHHHHTTC
T ss_pred hhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECCh---H--------------HHHhhHHHHHHCCc
Confidence 33556789999985332211 245555543 7898888876421 1 11112346677899
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
....+..+.
T Consensus 407 ~~~~~~~~d 415 (433)
T 1uwv_A 407 TIARLAMLD 415 (433)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEec
Confidence 988877664
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-11 Score=109.28 Aligned_cols=138 Identities=15% Similarity=0.222 Sum_probs=101.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC-----CeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA-----KNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~-----~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.+.. ..++.++++|.... ...++||+|+++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N 208 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 208 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEEC
Confidence 5689999999999999999887543 789999999999999997632 12578999998663 345679999998
Q ss_pred ccccccCCHH------------------HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhC
Q 019684 183 GSIEYWPDPQ------------------RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKA 244 (337)
Q Consensus 183 ~~l~~~~~~~------------------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 244 (337)
-.+.++++.+ .++.++.+.|+|||+++++.+.. ... -.....++++|.+.
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~---~~~---------~~~~~~ir~~l~~~ 276 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA---MFG---------TSDFAKVDKFIKKN 276 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG---GGG---------STTHHHHHHHHHHH
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch---hcC---------CchHHHHHHHHHhC
Confidence 7766654332 57999999999999999886532 100 11347788888888
Q ss_pred CCcEEEEEEcCcccccc
Q 019684 245 GFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 245 GF~~v~~~~~~~~~~~~ 261 (337)
|+.. .+..+....+..
T Consensus 277 ~~~~-~ii~lp~~~F~~ 292 (344)
T 2f8l_A 277 GHIE-GIIKLPETLFKS 292 (344)
T ss_dssp EEEE-EEEECCGGGSCC
T ss_pred CeEE-EeeeCChhhccC
Confidence 8643 334455455544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.8e-12 Score=117.63 Aligned_cols=105 Identities=20% Similarity=0.067 Sum_probs=83.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCC----CCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF----PTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~----~~~~fD~i~~ 181 (337)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++.. .+++++.+|+.+... .+++||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999987 445999999999999999987532 278999999865421 2567999998
Q ss_pred cccc---------cccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 182 AGSI---------EYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 182 ~~~l---------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
.-.. ++..+...++.++.++|+|||.+++.....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 5322 122345678999999999999998886543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-13 Score=118.22 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=79.1
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCC-CCccEE
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT-DYADRY 179 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~-~~fD~i 179 (337)
++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..+++++++|+.++++++ ++| .|
T Consensus 22 ~~~~~~-~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~v 97 (245)
T 1yub_A 22 IKQLNL-KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KI 97 (245)
T ss_dssp HHHCCC-CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EE
T ss_pred HHhcCC-CCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EE
Confidence 333333 36789999999999999999998 5899999999999999987754 256899999999887763 678 56
Q ss_pred Eeccc-----------ccccCCHHHHH----HHHHHhccCCCEEEEEc
Q 019684 180 VSAGS-----------IEYWPDPQRGI----REAYRVLKLGGKACIIG 212 (337)
Q Consensus 180 ~~~~~-----------l~~~~~~~~~l----~~~~~~LkpgG~l~i~~ 212 (337)
+++-- +.|..+....+ +.+.++|+|||.+.+..
T Consensus 98 v~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 98 VGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 65421 22223333344 66888888888876643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-11 Score=120.92 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=83.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----CCeEEEEcCCCC-CCCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIVEGDAED-LPFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~-~~~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++++.. .+++++++|+.+ ++...++||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 6889999999999999998875 345799999999999999987421 368999999965 344457899999843
Q ss_pred -----------cccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 184 -----------SIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 184 -----------~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+.....+...++.++.++|+|||.|++....
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2333445678999999999999999987654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=109.24 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=87.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY- 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~- 187 (337)
++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.| .+++++++|+.+... +++||+|+++--...
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~ 111 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------PWAEGILADFLLWEP-GEAFDLILGNPPYGIV 111 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------TTEEEEESCGGGCCC-SSCEEEEEECCCCCCB
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------CCCcEEeCChhhcCc-cCCCCEEEECcCccCc
Confidence 56799999999999999999875 568999999999998776 478999999977543 457999999522211
Q ss_pred ---------cCCH-------------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHH
Q 019684 188 ---------WPDP-------------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIE 239 (337)
Q Consensus 188 ---------~~~~-------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (337)
+.+. ..+++.+.++|+|||+++++.+..- +. -...+.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~---l~---------~~~~~~lr~ 179 (421)
T 2ih2_A 112 GEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW---LV---------LEDFALLRE 179 (421)
T ss_dssp SCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG---GT---------CGGGHHHHH
T ss_pred ccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHH---hc---------CccHHHHHH
Confidence 1111 2568999999999999998865320 00 012356888
Q ss_pred HHHhCCC
Q 019684 240 WFQKAGF 246 (337)
Q Consensus 240 ~l~~aGF 246 (337)
.+.+.|+
T Consensus 180 ~l~~~~~ 186 (421)
T 2ih2_A 180 FLAREGK 186 (421)
T ss_dssp HHHHHSE
T ss_pred HHHhcCC
Confidence 8888887
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-10 Score=103.62 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=64.5
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCCCC
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFP 172 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~ 172 (337)
.+.+.+++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ...+++++.+|+.++++.
T Consensus 29 ~i~~~i~~~~~~-~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKI-KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHHHHHHCC-CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC
T ss_pred HHHHHHHHhcCC-CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc
Confidence 344455555544 37789999999999999999987 679999999999999999874 225799999999887653
Q ss_pred CCCccEEEeccccc
Q 019684 173 TDYADRYVSAGSIE 186 (337)
Q Consensus 173 ~~~fD~i~~~~~l~ 186 (337)
+||+|+++...+
T Consensus 106 --~~D~Vv~n~py~ 117 (299)
T 2h1r_A 106 --KFDVCTANIPYK 117 (299)
T ss_dssp --CCSEEEEECCGG
T ss_pred --cCCEEEEcCCcc
Confidence 799999865443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-10 Score=102.92 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=73.1
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~ 173 (337)
..+.+.+++.+... ++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.. ..+++++++|+.++++++
T Consensus 36 ~~i~~~Iv~~l~~~-~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~ 112 (295)
T 3gru_A 36 KNFVNKAVESANLT-KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNK 112 (295)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGG
T ss_pred HHHHHHHHHhcCCC-CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCccc
Confidence 44555566666553 7889999999999999999998 6899999999999999998752 357999999999888877
Q ss_pred CCccEEEecccc
Q 019684 174 DYADRYVSAGSI 185 (337)
Q Consensus 174 ~~fD~i~~~~~l 185 (337)
.+||.|+++...
T Consensus 113 ~~fD~Iv~NlPy 124 (295)
T 3gru_A 113 LDFNKVVANLPY 124 (295)
T ss_dssp SCCSEEEEECCG
T ss_pred CCccEEEEeCcc
Confidence 789999977444
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-10 Score=106.00 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC--eEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ ++|+.+|+.++.. + +||+|++.-...
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPRA 364 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTT
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCcc
Confidence 36789999999999999999987 6799999999999999998753222 8999999987643 2 799999854322
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. ...+++.+. .|+|||.++++.
T Consensus 365 g~--~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 365 GL--HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CS--CHHHHHHHH-HHCCSEEEEEES
T ss_pred ch--HHHHHHHHH-hcCCCcEEEEEC
Confidence 11 134566554 599999998874
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=100.36 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=100.3
Q ss_pred CCCEEEEEcCcccHHHHHHH--------hhC-------CCCeEEEEeCCHHHHHHHHhhCCC---------------CC-
Q 019684 110 RNMLVVDVGGGTGFTTLGIV--------KHV-------DAKNVTILDQSPHQLAKAKQKEPL---------------KE- 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~--------~~~-------~~~~v~gvD~s~~~~~~a~~~~~~---------------~~- 158 (337)
...+|+|+|||+|..+..+. +.+ |..+|...|+........=+.+.. .+
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 46799999999999888762 222 678999999876554333222211 01
Q ss_pred --eEEEEcCCCCCCCCCCCccEEEecccccccC--------------------------------------CHHHHHHHH
Q 019684 159 --CKIVEGDAEDLPFPTDYADRYVSAGSIEYWP--------------------------------------DPQRGIREA 198 (337)
Q Consensus 159 --~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~--------------------------------------~~~~~l~~~ 198 (337)
+.-+.+.+..-.+++++||+|+++.++|++. |...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224455544458899999999999999986 333578899
Q ss_pred HHhccCCCEEEEEcCCCCch--------------hHhhhhhh----------------hhccCCCHHHHHHHHH-hCCCc
Q 019684 199 YRVLKLGGKACIIGPVYPTF--------------WLSRYFAD----------------VWMLFPKEEEYIEWFQ-KAGFK 247 (337)
Q Consensus 199 ~~~LkpgG~l~i~~~~~~~~--------------~~~~~~~~----------------~~~~~~~~~~~~~~l~-~aGF~ 247 (337)
++.|+|||+++++....... .+...+.+ ....+++.+++.+.++ +.||+
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 99999999999875433221 11111111 1123578999999998 59999
Q ss_pred EEEEEEcCccc
Q 019684 248 DVQLKRIGPKW 258 (337)
Q Consensus 248 ~v~~~~~~~~~ 258 (337)
+..++.+...|
T Consensus 292 I~~le~~~~~~ 302 (374)
T 3b5i_A 292 IDKLVVYKGGS 302 (374)
T ss_dssp EEEEEEEECCC
T ss_pred EEEEEEEeecC
Confidence 98887765443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-10 Score=104.30 Aligned_cols=123 Identities=14% Similarity=-0.012 Sum_probs=91.8
Q ss_pred CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC-----------------------------------
Q 019684 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA----------------------------------- 134 (337)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~----------------------------------- 134 (337)
..+..+.++..++...... ++..|||++||+|.+++.++....+
T Consensus 182 ~Apl~e~lAa~ll~l~~~~-~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~ 260 (393)
T 3k0b_A 182 SAPIKETMAAALVLLTSWH-PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANY 260 (393)
T ss_dssp SCSCCHHHHHHHHHHSCCC-TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred CCCCcHHHHHHHHHHhCCC-CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcc
Confidence 3455777888877777664 6789999999999999888765222
Q ss_pred ---CeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEecccccc-c---CCHHHHHHHHHHhcc
Q 019684 135 ---KNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGSIEY-W---PDPQRGIREAYRVLK 203 (337)
Q Consensus 135 ---~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~-~---~~~~~~l~~~~~~Lk 203 (337)
.+|+|+|+|+.+++.|++++. ..+++++++|+.+++.+ ++||+|+++--... + .+...+++++.+.||
T Consensus 261 ~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk 339 (393)
T 3k0b_A 261 DQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK 339 (393)
T ss_dssp TCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHh
Confidence 469999999999999998743 23589999999887755 47999999843321 2 223456777777777
Q ss_pred C--CCEEEEEcCC
Q 019684 204 L--GGKACIIGPV 214 (337)
Q Consensus 204 p--gG~l~i~~~~ 214 (337)
+ ||.+++....
T Consensus 340 ~~~g~~~~iit~~ 352 (393)
T 3k0b_A 340 RMPTWSVYVLTSY 352 (393)
T ss_dssp TCTTCEEEEEECC
T ss_pred cCCCCEEEEEECC
Confidence 6 8998887654
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-10 Score=104.65 Aligned_cols=122 Identities=11% Similarity=-0.010 Sum_probs=92.9
Q ss_pred CcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC------------------------------------
Q 019684 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA------------------------------------ 134 (337)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~------------------------------------ 134 (337)
.+..+.++..++...... ++..|||.+||+|.+++..+....+
T Consensus 176 Apl~e~LAaall~l~~~~-~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 254 (384)
T 3ldg_A 176 APIKENMAAAIILLSNWF-PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYD 254 (384)
T ss_dssp CCCCHHHHHHHHHHTTCC-TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred CCCcHHHHHHHHHHhCCC-CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhcc
Confidence 456677888877777764 6789999999999999988764222
Q ss_pred --CeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccc-cC---CHHHHHHHHHHhccC
Q 019684 135 --KNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEY-WP---DPQRGIREAYRVLKL 204 (337)
Q Consensus 135 --~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~-~~---~~~~~l~~~~~~Lkp 204 (337)
.+++|+|+|+.+++.|++|+.. ..++++++|+.+++.++ +||+|+++--... +. +...+++++.+.||+
T Consensus 255 ~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 255 IQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence 4699999999999999987532 35899999998877654 7999999743321 22 234677778888876
Q ss_pred --CCEEEEEcCC
Q 019684 205 --GGKACIIGPV 214 (337)
Q Consensus 205 --gG~l~i~~~~ 214 (337)
||.+++....
T Consensus 334 ~~g~~~~iit~~ 345 (384)
T 3ldg_A 334 LKTWSQFILTND 345 (384)
T ss_dssp CTTSEEEEEESC
T ss_pred CCCcEEEEEECC
Confidence 9999888664
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=101.25 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=101.6
Q ss_pred CCEEEEEcCcccHHHHHHHhh-----------------CCCCeEEEEeCC-----------HHHHHHHHhhCC-CCCeEE
Q 019684 111 NMLVVDVGGGTGFTTLGIVKH-----------------VDAKNVTILDQS-----------PHQLAKAKQKEP-LKECKI 161 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~-----------------~~~~~v~gvD~s-----------~~~~~~a~~~~~-~~~~~~ 161 (337)
..+|+|+||++|..+..+... .|..+|+..|+. +.+.+.+++... ..+.-|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999998877654 356889999987 455444433322 123345
Q ss_pred EEcCC---CCCCCCCCCccEEEecccccccCCHH---------------------------------------HHHHHHH
Q 019684 162 VEGDA---EDLPFPTDYADRYVSAGSIEYWPDPQ---------------------------------------RGIREAY 199 (337)
Q Consensus 162 ~~~d~---~~~~~~~~~fD~i~~~~~l~~~~~~~---------------------------------------~~l~~~~ 199 (337)
+.+.. ..-.|+++++|+|+++.++|++.+.. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 34568899999999999999985432 1266668
Q ss_pred HhccCCCEEEEEcCCCCch--------hHhhhhhh----------------hhccCCCHHHHHHHHHhC-CCcEEEEEEc
Q 019684 200 RVLKLGGKACIIGPVYPTF--------WLSRYFAD----------------VWMLFPKEEEYIEWFQKA-GFKDVQLKRI 254 (337)
Q Consensus 200 ~~LkpgG~l~i~~~~~~~~--------~~~~~~~~----------------~~~~~~~~~~~~~~l~~a-GF~~v~~~~~ 254 (337)
+.|+|||++++........ .+...+.+ ....+++.++++.+++++ +|++.+++.+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~ 292 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETF 292 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 9999999999986554332 22222211 112457999999999998 5888888776
Q ss_pred Cccc
Q 019684 255 GPKW 258 (337)
Q Consensus 255 ~~~~ 258 (337)
...|
T Consensus 293 ~~~~ 296 (384)
T 2efj_A 293 NAPY 296 (384)
T ss_dssp EEET
T ss_pred eecc
Confidence 5333
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-10 Score=99.70 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=71.5
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 174 (337)
..+.+.+++.+... ++ +|||||||+|.++..+++. +.+|+++|+|+.+++.++++....+++++++|+.++++++.
T Consensus 33 ~~i~~~Iv~~~~~~-~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~ 108 (271)
T 3fut_A 33 EAHLRRIVEAARPF-TG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEV 108 (271)
T ss_dssp HHHHHHHHHHHCCC-CS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGS
T ss_pred HHHHHHHHHhcCCC-CC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhc
Confidence 44566666666654 56 9999999999999999998 57999999999999999998876789999999988776542
Q ss_pred -CccEEEecccc
Q 019684 175 -YADRYVSAGSI 185 (337)
Q Consensus 175 -~fD~i~~~~~l 185 (337)
.+|.|+++--.
T Consensus 109 ~~~~~iv~NlPy 120 (271)
T 3fut_A 109 PQGSLLVANLPY 120 (271)
T ss_dssp CTTEEEEEEECS
T ss_pred cCccEEEecCcc
Confidence 58888876543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.00 E-value=8.5e-10 Score=97.22 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=67.1
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~ 173 (337)
..+.+.+++.+... ++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++... .+++++++|+.++++++
T Consensus 15 ~~i~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQ-KTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS 91 (255)
T ss_dssp HHHHHHHHHHHCCC-TTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGG
T ss_pred HHHHHHHHHhcCCC-CcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHH
Confidence 34555556665553 6889999999999999999998 58999999999999999988643 68999999998877543
Q ss_pred ----CCccEEEec
Q 019684 174 ----DYADRYVSA 182 (337)
Q Consensus 174 ----~~fD~i~~~ 182 (337)
++|| |+++
T Consensus 92 ~~~~~~~~-vv~N 103 (255)
T 3tqs_A 92 VKTDKPLR-VVGN 103 (255)
T ss_dssp SCCSSCEE-EEEE
T ss_pred hccCCCeE-EEec
Confidence 4688 5543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=101.17 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=91.7
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC--------------------------------------
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-------------------------------------- 133 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-------------------------------------- 133 (337)
+..+.++..++...... ++.+|||++||+|.+++.++....
T Consensus 178 pl~e~lAa~ll~~~~~~-~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 256 (385)
T 3ldu_A 178 PIRETLAAGLIYLTPWK-AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES 256 (385)
T ss_dssp CCCHHHHHHHHHTSCCC-TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred CCcHHHHHHHHHhhCCC-CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence 45677777777776664 678999999999999998876521
Q ss_pred CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCCCCCccEEEecccccc-c---CCHHHHHHHHHHhccC-
Q 019684 134 AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEY-W---PDPQRGIREAYRVLKL- 204 (337)
Q Consensus 134 ~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~-~---~~~~~~l~~~~~~Lkp- 204 (337)
..+|+|+|+++.+++.|++++.. .++++.++|+.+++.+ ++||+|+++--... + .+...+++++.+.||+
T Consensus 257 ~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 257 KFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 15799999999999999987532 3689999999887654 47999999655432 1 2234677777778876
Q ss_pred -CCEEEEEcCC
Q 019684 205 -GGKACIIGPV 214 (337)
Q Consensus 205 -gG~l~i~~~~ 214 (337)
|+.+++....
T Consensus 336 ~g~~~~iit~~ 346 (385)
T 3ldu_A 336 KNWSYYLITSY 346 (385)
T ss_dssp BSCEEEEEESC
T ss_pred CCCEEEEEECC
Confidence 8888887654
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.94 E-value=5.7e-10 Score=106.46 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=84.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-------------CCCeEEEEeCCHHHHHHHHhhCC--C-C--C
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-------------DAKNVTILDQSPHQLAKAKQKEP--L-K--E 158 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-------------~~~~v~gvD~s~~~~~~a~~~~~--~-~--~ 158 (337)
+.+.+++.+.. .++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|+.+.. . . +
T Consensus 159 v~~~mv~~l~~-~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 159 LIQAMVDCINP-QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHCC-CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHhCC-CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 33333433332 367899999999999999887653 34689999999999999987632 1 1 5
Q ss_pred eEEEEcCCCCCCCCCCCccEEEecccccccCC-----------------HHHHHHHHHHhccCCCEEEEEcC
Q 019684 159 CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD-----------------PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 159 ~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~-----------------~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..+.++|....+.. .+||+|+++-.+.+... ...++.++.++|||||++.++.+
T Consensus 238 ~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 67899998765543 37999999755544321 13789999999999999988765
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.7e-09 Score=92.20 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=73.4
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTD 174 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 174 (337)
..+.+.+++.+... ++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.++++ ...+++++++|+.++++++.
T Consensus 17 ~~i~~~iv~~~~~~-~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~~~~v~~i~~D~~~~~~~~~ 93 (249)
T 3ftd_A 17 EGVLKKIAEELNIE-EGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-GDERLEVINEDASKFPFCSL 93 (249)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-CCTTEEEECSCTTTCCGGGS
T ss_pred HHHHHHHHHhcCCC-CcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-cCCCeEEEEcchhhCChhHc
Confidence 45566666666553 6889999999999999999987 458999999999999999988 55689999999998876642
Q ss_pred CccEEEecccccccCCHHHHHHHHHHh
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRV 201 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~ 201 (337)
.-+.++..+.-.++. ..++.++.+.
T Consensus 94 ~~~~~vv~NlPy~i~--~~il~~ll~~ 118 (249)
T 3ftd_A 94 GKELKVVGNLPYNVA--SLIIENTVYN 118 (249)
T ss_dssp CSSEEEEEECCTTTH--HHHHHHHHHT
T ss_pred cCCcEEEEECchhcc--HHHHHHHHhc
Confidence 113333333333332 2344444443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-09 Score=99.61 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=80.4
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCC-
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLP- 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~- 170 (337)
+.+...+++.... .+.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++.. .+++|+.+|+.+..
T Consensus 200 ~~l~~~~~~~~~~--~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~ 275 (369)
T 3bt7_A 200 IQMLEWALDVTKG--SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 275 (369)
T ss_dssp HHHHHHHHHHTTT--CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH
T ss_pred HHHHHHHHHHhhc--CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 4455555555443 3578999999999999999886 57999999999999999987532 47899999986531
Q ss_pred -CCC--------------CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 171 -FPT--------------DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 171 -~~~--------------~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+.. .+||+|++.--- ..+..++.+.|+++|.++++...
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEESC
T ss_pred HHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEECC
Confidence 111 379999864211 12345677788899999887654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.7e-09 Score=93.30 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCC---CCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPT---DYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~---~~fD~i~~ 181 (337)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++. ..+++++.+|+.+++... .+||.|++
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 478999999999999999999874 45899999999999999998743 257899999997764322 47999997
Q ss_pred c------ccccccC-----------CH-------HHHHHHHHHhccCCCEEEEEcCCC
Q 019684 182 A------GSIEYWP-----------DP-------QRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 182 ~------~~l~~~~-----------~~-------~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
. .++..-+ +. .++++++.++|+ ||+|+..+...
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 2 2222111 11 146777777786 99988876654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.3e-10 Score=99.23 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=67.5
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCC--CC--
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP--FP-- 172 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~--~~-- 172 (337)
+.+++.+.. .++.+|||+|||+|.++..+++.+|+.+|+|+|.|+.+++.|+++... .+++++++|+.+++ +.
T Consensus 16 ~e~l~~L~~-~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 16 REVIEFLKP-EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHCC-CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhcCC-CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 333444443 378899999999999999999998788999999999999999998654 57999999997764 11
Q ss_pred -CCCccEEEecc
Q 019684 173 -TDYADRYVSAG 183 (337)
Q Consensus 173 -~~~fD~i~~~~ 183 (337)
..+||.|++..
T Consensus 95 g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 95 GIEKVDGILMDL 106 (301)
T ss_dssp TCSCEEEEEEEC
T ss_pred CCCCCCEEEEcC
Confidence 15799999754
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-09 Score=97.47 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=103.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhh----------------CCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEE---EcCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKH----------------VDAKNVTILDQSPHQLAKAKQKEPL----KECKIV---EGDA 166 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~----------------~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~---~~d~ 166 (337)
..-+|+|+||++|..+..+... .|..+|+..|+.......+-+.+.. .+.-|+ .+.+
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4578999999999877654433 4668999999988888877766542 122343 4455
Q ss_pred CCCCCCCCCccEEEecccccccCCH---------------------------------HHHHHHHHHhccCCCEEEEEcC
Q 019684 167 EDLPFPTDYADRYVSAGSIEYWPDP---------------------------------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 167 ~~~~~~~~~fD~i~~~~~l~~~~~~---------------------------------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..-.++++++|+|+++.++|++.+. ..+|+..++.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 5567889999999999999998541 1358899999999999998743
Q ss_pred CCCch------------hHhhhhhh----------------hhccCCCHHHHHHHHHhCC-CcEEEEEEcCccc
Q 019684 214 VYPTF------------WLSRYFAD----------------VWMLFPKEEEYIEWFQKAG-FKDVQLKRIGPKW 258 (337)
Q Consensus 214 ~~~~~------------~~~~~~~~----------------~~~~~~~~~~~~~~l~~aG-F~~v~~~~~~~~~ 258 (337)
..... .+...+.+ ....+++.+++++.++++| |++.+.+.+...|
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~ 284 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW 284 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEET
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeecc
Confidence 32211 12222211 1124578999999999995 4877776655444
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-09 Score=100.83 Aligned_cols=99 Identities=21% Similarity=0.146 Sum_probs=79.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------------------CCeEEEEcCCCCCC-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------------KECKIVEGDAEDLP- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------------~~~~~~~~d~~~~~- 170 (337)
++.+|||+|||+|..++.++...++.+|+++|+++.+++.+++|+.. .+++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 57899999999999999999987778999999999999999987432 23889999985532
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
...++||+|++.- . .....++..+.+.|+|||.++++.
T Consensus 127 ~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1135799999532 2 234678999999999999888864
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.6e-09 Score=93.18 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=60.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCC--CeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP 172 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~ 172 (337)
..+.+.+++.+... ++.+|||||||+|.++..+++..+. .+|+|+|+|+.+++.++++. ..+++++++|+.+++++
T Consensus 28 ~~i~~~iv~~~~~~-~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 28 HGVIDAIVAAIRPE-RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-GELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHHHHHCCC-TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-GGGEEEEESCGGGCCGG
T ss_pred HHHHHHHHHhcCCC-CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-CCCcEEEECChhcCChh
Confidence 33455555555543 7889999999999999999988321 33999999999999999884 46799999999887764
Q ss_pred C
Q 019684 173 T 173 (337)
Q Consensus 173 ~ 173 (337)
+
T Consensus 106 ~ 106 (279)
T 3uzu_A 106 S 106 (279)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-09 Score=98.71 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=78.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCC----CC-eEEEEcCCCCC-C-CCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL----KE-CKIVEGDAEDL-P-FPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~----~~-~~~~~~d~~~~-~-~~~~~fD~i~~ 181 (337)
++.+|||++||+|.+++.++.+.++ .+|+++|+++.+++.+++|+.. .+ ++++.+|+.+. . ...++||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 6789999999999999999987545 6899999999999999987542 23 88999998542 1 12457999997
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.- ......++..+.+.|+|||.|+++.
T Consensus 132 DP----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 64 1234578999999999999888875
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-08 Score=100.58 Aligned_cols=124 Identities=10% Similarity=0.014 Sum_probs=88.5
Q ss_pred CCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC------------------------------------
Q 019684 89 NPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV------------------------------------ 132 (337)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~------------------------------------ 132 (337)
...+..+.++..++...... ++..|||.+||+|.+++..+...
T Consensus 170 ~~apl~e~LAa~ll~~~~~~-~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~ 248 (703)
T 3v97_A 170 GIAPIKETLAAAIVMRSGWQ-PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRA 248 (703)
T ss_dssp CCCSSCHHHHHHHHHHTTCC-TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhhCCC-CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHh
Confidence 34466788888888777664 67899999999999998877541
Q ss_pred ------CCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC--CCCCCccEEEecccccc-cC---CHHHHHH
Q 019684 133 ------DAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP--FPTDYADRYVSAGSIEY-WP---DPQRGIR 196 (337)
Q Consensus 133 ------~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~~~~~fD~i~~~~~l~~-~~---~~~~~l~ 196 (337)
+..+++|+|+++.+++.|++|+.. ..++|.++|+.++. ..+++||+|+++--... +. +...+++
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~ 328 (703)
T 3v97_A 249 RKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHS 328 (703)
T ss_dssp HHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHH
T ss_pred hhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHH
Confidence 125899999999999999988532 34899999997763 33447999999733321 11 2233444
Q ss_pred ---HHHHhccCCCEEEEEcC
Q 019684 197 ---EAYRVLKLGGKACIIGP 213 (337)
Q Consensus 197 ---~~~~~LkpgG~l~i~~~ 213 (337)
++.+.+.|||.+++...
T Consensus 329 ~l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 329 LLGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHhhCCCCeEEEEeC
Confidence 44455568999988754
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.5e-08 Score=87.27 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC--------CCCCeEEEEcCCCC-CCCCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECKIVEGDAED-LPFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~~~d~~~-~~~~~~~fD~i 179 (337)
++.++||-||.|.|..++.+.+..+..+|+.+|+++.+++.+++.. ..++++++.+|+.. +....++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 3678999999999999999999866789999999999999998764 24789999999955 34456789999
Q ss_pred EecccccccCC----HHHHHHHHHHhccCCCEEEEEc
Q 019684 180 VSAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 180 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+.-..=..-+. -..+++.+.+.|+|||.++...
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 97432111111 1479999999999999999863
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-09 Score=92.99 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=85.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhh-------CCC-----CeEEEEeCCH---HHHH-----------HHHhhC---------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKH-------VDA-----KNVTILDQSP---HQLA-----------KAKQKE--------- 154 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~-------~~~-----~~v~gvD~s~---~~~~-----------~a~~~~--------- 154 (337)
+..+|||||+|+|..+..+.+. .|. .+++++|..| +.+. .+++..
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 5679999999999998886654 453 5899999876 4444 333321
Q ss_pred ------CC--CCeEEEEcCCCC-CCCCC----CCccEEEecc-cccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCch
Q 019684 155 ------PL--KECKIVEGDAED-LPFPT----DYADRYVSAG-SIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTF 218 (337)
Q Consensus 155 ------~~--~~~~~~~~d~~~-~~~~~----~~fD~i~~~~-~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 218 (337)
.. .+++++.+|+.+ ++..+ ..||+|+... .-...++ ...+++.+.++|+|||.|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa----- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC-----
Confidence 11 347788999855 44222 2799999853 2222222 25799999999999999875221
Q ss_pred hHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 219 WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...++..|.++||++....-.+
T Consensus 215 ---------------a~~vrr~L~~aGF~v~~~~g~~ 236 (257)
T 2qy6_A 215 ---------------AGFVRRGLQEAGFTMQKRKGFG 236 (257)
T ss_dssp ---------------BHHHHHHHHHHTEEEEEECCST
T ss_pred ---------------CHHHHHHHHHCCCEEEeCCCCC
Confidence 1346788999999977665544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=88.87 Aligned_cols=105 Identities=11% Similarity=0.029 Sum_probs=72.3
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-CCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 108 ~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
..++.+|||+|||+|.|+..+++..+...++|+|++.++........ ...++..+..+++...+.+++||+|+|..+.+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 35788999999999999998887755567889998754311111000 01155566777655566778899999976555
Q ss_pred ccCCH----H---HHHHHHHHhccCC-CEEEEEcC
Q 019684 187 YWPDP----Q---RGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 187 ~~~~~----~---~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
.... . .+++.+.++|+|| |.+++--.
T Consensus 152 -sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 152 -SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred -cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 3222 1 3568889999999 99988543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-09 Score=93.97 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=61.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCH-------HHHHHHHhhCCC----CCeEEEEcCCCCC-C-CCC--C
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP-------HQLAKAKQKEPL----KECKIVEGDAEDL-P-FPT--D 174 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~-------~~~~~a~~~~~~----~~~~~~~~d~~~~-~-~~~--~ 174 (337)
++.+|||+|||+|.++..++.. +.+|+|+|+|+ .+++.|+++... .+++++++|+.+. + +++ +
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 5689999999999999999997 67999999999 999999876421 3599999999763 3 343 6
Q ss_pred CccEEEecccccc
Q 019684 175 YADRYVSAGSIEY 187 (337)
Q Consensus 175 ~fD~i~~~~~l~~ 187 (337)
+||+|++.-.+.+
T Consensus 161 ~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 161 KPDIVYLDPMYPE 173 (258)
T ss_dssp CCSEEEECCCC--
T ss_pred CccEEEECCCCCC
Confidence 7999999877765
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-08 Score=89.12 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=60.9
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCC-
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTD- 174 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~- 174 (337)
+...+++.+.. .++.+|||||||+|.++. +. ..+..+|+++|+++.+++.++++... .+++++++|+.++++++.
T Consensus 9 i~~~iv~~~~~-~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 9 VIDSIVSAINP-QKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHHCC-CTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHHhcCC-CCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 44445555544 367899999999999999 65 42222399999999999999987643 479999999988765431
Q ss_pred ----CccEEEecc
Q 019684 175 ----YADRYVSAG 183 (337)
Q Consensus 175 ----~fD~i~~~~ 183 (337)
..|.|+++-
T Consensus 86 ~~~~~~~~vvsNl 98 (252)
T 1qyr_A 86 EKMGQPLRVFGNL 98 (252)
T ss_dssp HHHTSCEEEEEEC
T ss_pred cccCCceEEEECC
Confidence 235666553
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-08 Score=98.05 Aligned_cols=138 Identities=14% Similarity=0.024 Sum_probs=92.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC------------------CCeEEEEeCCHHHHHHHHhhCCC---CC-----eEEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD------------------AKNVTILDQSPHQLAKAKQKEPL---KE-----CKIVE 163 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~------------------~~~v~gvD~s~~~~~~a~~~~~~---~~-----~~~~~ 163 (337)
++.+|||.+||+|.++..+++... ..+++|+|+++.+++.|+.++.. .+ ..+.+
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 678999999999999988776421 24799999999999999976321 22 67888
Q ss_pred cCCCCCC-CCCCCccEEEecccccccCC--------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhh
Q 019684 164 GDAEDLP-FPTDYADRYVSAGSIEYWPD--------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228 (337)
Q Consensus 164 ~d~~~~~-~~~~~fD~i~~~~~l~~~~~--------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 228 (337)
+|....+ ...++||+|+++--+..... ...++.++.+.|+|||++.++.+. ..+...
T Consensus 249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~---~~L~~~----- 320 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD---NVLFEG----- 320 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH---HHHHCC-----
T ss_pred CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC---cceecC-----
Confidence 9885533 34567999999644432211 236899999999999999988542 111100
Q ss_pred ccCCCHHHHHHHHHhCCCcEEEEEEcCcccc
Q 019684 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (337)
Q Consensus 229 ~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 259 (337)
.....+++.|.+.+ .+..+..+....|
T Consensus 321 ---~~~~~iR~~L~~~~-~l~~ii~Lp~~~F 347 (541)
T 2ar0_A 321 ---GKGTDIRRDLMDKC-HLHTILRLPTGIF 347 (541)
T ss_dssp ---THHHHHHHHHHHHE-EEEEEEECCSSCS
T ss_pred ---cHHHHHHHHHhhcC-CEEEEEEcCcCcc
Confidence 01245656665543 4445556665544
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-07 Score=76.27 Aligned_cols=95 Identities=15% Similarity=0.006 Sum_probs=71.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCCC--------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDL-------------- 169 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~-------------- 169 (337)
+.++|||+||| ..++.+++. ++.+|+.+|.+++..+.|+++.. ..+++++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 56899999985 677777775 47899999999999999987632 35689999997432
Q ss_pred -C--------C-CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 170 -P--------F-PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 170 -~--------~-~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+ . ..++||+|+.-.- .....+..+.+.|+|||.+++-+
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence 1 1 2367999997652 22466677889999999996544
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.7e-08 Score=91.37 Aligned_cols=71 Identities=23% Similarity=0.370 Sum_probs=59.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCC-CC-CCCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL-PF-PTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~-~~-~~~~fD~i~~~ 182 (337)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++.. ..+++++++|+.+. +. .+++||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4899999999999999999887 6899999999999999998853 24699999999763 32 23579999984
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.9e-08 Score=84.62 Aligned_cols=104 Identities=16% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh-CCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.++.+|||+|||+|.|+..+++..+...|+|+|++..+...+... ....++.....++....+..+++|+|+|.....
T Consensus 89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApn- 167 (282)
T 3gcz_A 89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGES- 167 (282)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCC-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCccC-
Confidence 478899999999999999988776667899999986542222110 001234444444333345567899999977665
Q ss_pred cCCHH-------HHHHHHHHhccCC--CEEEEEcC
Q 019684 188 WPDPQ-------RGIREAYRVLKLG--GKACIIGP 213 (337)
Q Consensus 188 ~~~~~-------~~l~~~~~~Lkpg--G~l~i~~~ 213 (337)
..... .+++-+.++|+|| |.+++--.
T Consensus 168 sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 168 SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 33321 3577778999999 99988544
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.5e-08 Score=86.16 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=64.2
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh-------CCC-----CCeEEEEcCCCC-CCCCCCCccE
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-------EPL-----KECKIVEGDAED-LPFPTDYADR 178 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~-------~~~-----~~~~~~~~d~~~-~~~~~~~fD~ 178 (337)
.+|||+|||+|..+..++.. +++|+++|.++.+.+.++++ ... .+++++++|+.+ ++...++||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence 89999999999999999998 67999999999764444432 221 358999999865 3322236999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGG 206 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG 206 (337)
|++.-.+.+- .....+++..+.|++.+
T Consensus 168 V~lDP~y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 168 VYLDPMFPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEECCCCCCC-CC-----HHHHHHHHHS
T ss_pred EEEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence 9998777653 33345666667776654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.3e-07 Score=87.05 Aligned_cols=141 Identities=13% Similarity=0.046 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC---CCCeEEEEeCCHHHHHHHHhhCC---C--CCeEEEEcCCCCC--C-CCCCCcc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEP---L--KECKIVEGDAEDL--P-FPTDYAD 177 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~---~--~~~~~~~~d~~~~--~-~~~~~fD 177 (337)
.++.+|||.+||+|.++..+++.. +..+++|+|+++.+...|+.+.. . .++.+.++|.... | ....+||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 367899999999999998888774 35789999999999999997632 1 3567899998654 3 4567899
Q ss_pred EEEeccccc--c-----------------cC---C-HHHHHHHHHHhcc-CCCEEEEEcCCCCchhHhhhhhhhhccCCC
Q 019684 178 RYVSAGSIE--Y-----------------WP---D-PQRGIREAYRVLK-LGGKACIIGPVYPTFWLSRYFADVWMLFPK 233 (337)
Q Consensus 178 ~i~~~~~l~--~-----------------~~---~-~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (337)
+|+++--+. . ++ + .-.++..+.+.|+ |||++.++.+.. ++... ..
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g---~Lf~~--------~~ 368 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG---VLFRG--------NA 368 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH---HHHCC--------TH
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch---HhhCC--------ch
Confidence 999852111 0 11 0 1248999999999 999998876531 11100 01
Q ss_pred HHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 234 EEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 234 ~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
...+++.|-+.+. +..+..+....|.+
T Consensus 369 ~~~iRk~Lle~~~-l~~II~LP~~lF~~ 395 (542)
T 3lkd_A 369 EGTIRKALLEEGA-IDTVIGLPANIFFN 395 (542)
T ss_dssp HHHHHHHHHHTTC-EEEEEECCSSCSSS
T ss_pred hHHHHHHHHhCCc-eeEEEEccccccCC
Confidence 3567777777654 44555666555543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-07 Score=88.37 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCCEEEEEcCcccHHHH---HHHhhCC-CCeEEEEeCCHHHHHHHHh----hCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTL---GIVKHVD-AKNVTILDQSPHQLAKAKQ----KEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~---~l~~~~~-~~~v~gvD~s~~~~~~a~~----~~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
.+..|||||||+|.+.. ..++... ..+|++||-|+.+. .+++ +.-...|+++.+|++++..++ ++|+|++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~eev~LPE-KVDIIVS 434 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDMREWVAPE-KADIIVS 434 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCTTTCCCSS-CEEEEEC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcceeccCCc-ccCEEEE
Confidence 44689999999998843 3333321 23789999998543 4443 333456999999999987664 6999998
Q ss_pred ccc---ccccCCHHHHHHHHHHhccCCCEEE
Q 019684 182 AGS---IEYWPDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 182 ~~~---l~~~~~~~~~l~~~~~~LkpgG~l~ 209 (337)
-.+ +.+.. ...++....+.|||||.++
T Consensus 435 EwMG~fLl~E~-mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 435 ELLGSFADNEL-SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCBTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred EcCcccccccC-CHHHHHHHHHhcCCCcEEc
Confidence 432 22222 2367888899999999875
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.43 E-value=7.6e-08 Score=94.47 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCEEEEEcCcccHHHHHH---HhhC----------CCCeEEEEeCCHHHHHHHHh---hCCCCCeEEEEcCCCCCCCC--
Q 019684 111 NMLVVDVGGGTGFTTLGI---VKHV----------DAKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDAEDLPFP-- 172 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l---~~~~----------~~~~v~gvD~s~~~~~~a~~---~~~~~~~~~~~~d~~~~~~~-- 172 (337)
+..|||||||+|.+.... ++.. ...+|++||.|+.+....+. +.-...++++.+|++++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 568999999999996432 2111 13499999999876644443 23335699999999987653
Q ss_pred ---CCCccEEEecccccccCC--HHHHHHHHHHhccCCCEEE
Q 019684 173 ---TDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 173 ---~~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~ 209 (337)
.+++|+|++-.+=....+ ....|..+.+.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 467999998655322222 2367888889999999875
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.4e-07 Score=87.68 Aligned_cols=139 Identities=13% Similarity=0.002 Sum_probs=92.3
Q ss_pred CEEEEEcCcccHHHHHHHhhCC---------------CCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCC-C
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVD---------------AKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLP-F 171 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~---------------~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~-~ 171 (337)
.+|||.+||+|.++..+++... ..+++|+|+++.++..|+.++.. .++.+.++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999888754321 46899999999999999976321 23333677764433 4
Q ss_pred CCCCccEEEecccccc-------------------------cCC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhh
Q 019684 172 PTDYADRYVSAGSIEY-------------------------WPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR 222 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~-------------------------~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 222 (337)
.+.+||+|+++--+.. .+. .-.++..+.+.|+|||++.++.+.. .+..
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g---~L~~ 402 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG---SMSS 402 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH---HHHC
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch---hhhc
Confidence 5678999999533221 111 1258999999999999998876531 1110
Q ss_pred hhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 223 YFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
. -.....+++.|-+.+. +..+..++...|.+
T Consensus 403 ~-------~~~~~~iRk~Lle~~~-l~aII~LP~~lF~~ 433 (544)
T 3khk_A 403 N-------TNNEGEIRKTLVEQDL-VECMVALPGQLFTN 433 (544)
T ss_dssp C-------GGGHHHHHHHHHHTTC-EEEEEECCTTBCCS
T ss_pred C-------cchHHHHHHHHHhCCc-HhEEEECCCCCCCC
Confidence 0 0124567788777765 55566676665544
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7e-07 Score=78.76 Aligned_cols=107 Identities=12% Similarity=0.052 Sum_probs=69.7
Q ss_pred CCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh-CCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 106 DLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 106 ~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.+..++.+|||+||++|.|+..+++..+...|.|+|++..+....... ....++.....++....+..+.+|+|+|...
T Consensus 77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A 156 (300)
T 3eld_A 77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG 156 (300)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc
Confidence 444689999999999999999999875566899999975431111000 0012333333333323345678999999655
Q ss_pred ccccCCH-------HHHHHHHHHhccCC-CEEEEEcC
Q 019684 185 IEYWPDP-------QRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 185 l~~~~~~-------~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
.. .... ..++.-+.++|+|| |.|++--+
T Consensus 157 Pn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 157 ES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp CC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 54 3332 14577778999999 99988644
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=87.37 Aligned_cols=141 Identities=11% Similarity=0.048 Sum_probs=90.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC---CCeEEEEeCCHHHHHHH--HhhCCC----C---CeEEEEcCCCCC-CCCCCCc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD---AKNVTILDQSPHQLAKA--KQKEPL----K---ECKIVEGDAEDL-PFPTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~---~~~v~gvD~s~~~~~~a--~~~~~~----~---~~~~~~~d~~~~-~~~~~~f 176 (337)
++.+|||.|||+|.++..+++..+ ..+++|+|+++.+++.| +.+... . ...+...|+... +...++|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 578999999999999999988764 35899999999999999 544322 1 124555565442 2345679
Q ss_pred cEEEecccccc-cC---------------------------C-HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh
Q 019684 177 DRYVSAGSIEY-WP---------------------------D-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227 (337)
Q Consensus 177 D~i~~~~~l~~-~~---------------------------~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 227 (337)
|+|+++--... .. + ...++..+.+.|+|||++.++.+.. ++...
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s---~Lf~s---- 473 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ---YLTAQ---- 473 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH---HHHCC----
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH---HhccC----
Confidence 99999543311 00 1 2347888999999999999886531 11100
Q ss_pred hccCCCHHHHHHHHHhCCCcEEEEEEcCc-ccccc
Q 019684 228 WMLFPKEEEYIEWFQKAGFKDVQLKRIGP-KWYRG 261 (337)
Q Consensus 228 ~~~~~~~~~~~~~l~~aGF~~v~~~~~~~-~~~~~ 261 (337)
-.....+++.|.+. +.+..+..++. .+|..
T Consensus 474 ---g~~~kkLRk~LLe~-~~I~aIIdLP~~~~F~~ 504 (878)
T 3s1s_A 474 ---GNESKAFREFLVGN-FGLEHIFLYPREGLFEE 504 (878)
T ss_dssp ---SHHHHHHHHHHTTT-TCEEEEEECCBCCSSCS
T ss_pred ---ChHHHHHHHHHHhC-CCeEEEEECCCccccCC
Confidence 00134566665544 34456666665 45544
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3e-06 Score=77.53 Aligned_cols=122 Identities=14% Similarity=0.043 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.+|.+|||+||.+|.|+..+++. +.+|++||+.+-. .... ..++++++++|+.......+.||+|+|..+.
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-~~l~---~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~--- 280 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-QSLM---DTGQVTWLREDGFKFRPTRSNISWMVCDMVE--- 280 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-HHHH---TTTCEEEECSCTTTCCCCSSCEEEEEECCSS---
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-hhhc---cCCCeEEEeCccccccCCCCCcCEEEEcCCC---
Confidence 48999999999999999999998 7899999986422 2222 2368999999998776667789999986543
Q ss_pred CCHHHHHHHHHHhccCC---CEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 189 PDPQRGIREAYRVLKLG---GKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 189 ~~~~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
++..++.-+.+.|..+ +.++......... ..... ...+.+.+.|+.+||..
T Consensus 281 -~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~-~~~l~-------~~~~~i~~~l~~~g~~~ 334 (375)
T 4auk_A 281 -KPAKVAALMAQWLVNGWCRETIFNLKLPMKKR-YEEVS-------HNLAYIQAQLDEHGINA 334 (375)
T ss_dssp -CHHHHHHHHHHHHHTTSCSEEEEEEECCSSSH-HHHHH-------HHHHHHHHHHHHTTCCE
T ss_pred -ChHHhHHHHHHHHhccccceEEEEEEecccch-HHHHH-------HHHHHHHHHHHhcCcch
Confidence 5666777777766665 4443332221110 00000 02356778999999973
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.9e-07 Score=71.90 Aligned_cols=85 Identities=20% Similarity=0.197 Sum_probs=59.5
Q ss_pred CCCEEEEEcCccc-HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCC-CCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT-DYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~-~~fD~i~~~~~l~~ 187 (337)
++.+|||||||+| ..+..|++.. +.+|+++|+++..++ +++.|+.+..... +.||+|++..--
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~------------~v~dDiF~P~~~~Y~~~DLIYsirPP-- 99 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG------------IVRDDITSPRMEIYRGAALIYSIRPP-- 99 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT------------EECCCSSSCCHHHHTTEEEEEEESCC--
T ss_pred CCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc------------eEEccCCCCcccccCCcCEEEEcCCC--
Confidence 4679999999999 6999999842 889999999886654 8889997733221 369999975533
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++.+..+.++.+.. |.-++|..
T Consensus 100 -~El~~~i~~lA~~v--~adliI~p 121 (153)
T 2k4m_A 100 -AEIHSSLMRVADAV--GARLIIKP 121 (153)
T ss_dssp -TTTHHHHHHHHHHH--TCEEEEEC
T ss_pred -HHHHHHHHHHHHHc--CCCEEEEc
Confidence 24444444444433 45666653
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=77.35 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=64.5
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CCC
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPT 173 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~~ 173 (337)
..+++.+.. .++..+||.+||.|..+..+++. +.+|+|+|.++.+++.+++ +...+++++++|+.++. ...
T Consensus 12 ~e~le~L~~-~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 12 QEALDLLAV-RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHHHHHHTC-CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHhhCC-CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHHHHcCC
Confidence 334444444 37889999999999999999998 6799999999999999998 65568999999997763 122
Q ss_pred CCccEEEec
Q 019684 174 DYADRYVSA 182 (337)
Q Consensus 174 ~~fD~i~~~ 182 (337)
+++|.|++.
T Consensus 88 ~~vDgIL~D 96 (285)
T 1wg8_A 88 ERVDGILAD 96 (285)
T ss_dssp SCEEEEEEE
T ss_pred CCcCEEEeC
Confidence 569999973
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.1e-06 Score=77.00 Aligned_cols=103 Identities=20% Similarity=0.149 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-----------CCeEEEEcCCCCC----CCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----------KECKIVEGDAEDL----PFPT 173 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~~~d~~~~----~~~~ 173 (337)
.++++||-||.|.|..++.+.+. +..+|+.+|+++.+++.+++.... ++++++.+|+... .-..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 35689999999999999999886 568999999999999999986431 3478888887432 1234
Q ss_pred CCccEEEecccccc-cCCH---------HHHHHHHHHhccCCCEEEEEc
Q 019684 174 DYADRYVSAGSIEY-WPDP---------QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 174 ~~fD~i~~~~~l~~-~~~~---------~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++||+|+.-..-.. ..++ ..+++.+.+.|+|||.++...
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 57999997532111 1111 367899999999999998753
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-06 Score=77.85 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---------CCCeEEEEcCCCCCC-CCCCCccE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LKECKIVEGDAEDLP-FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~-~~~~~fD~ 178 (337)
++|.+|||+++|.|.-+..+++..+...++++|+++.-++..++++. ..++.+...|...++ ...+.||.
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~ 226 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR 226 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence 47899999999999999999988666789999999998887776532 146788888886653 34567999
Q ss_pred EEec----c----cccccCC------H----------HHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 179 YVSA----G----SIEYWPD------P----------QRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 179 i~~~----~----~l~~~~~------~----------~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
|++- . ++..-++ + .++|.++.+.|||||+|+.++....
T Consensus 227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 9972 1 1111111 0 2688999999999999998877654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=5.8e-06 Score=71.34 Aligned_cols=104 Identities=16% Similarity=0.098 Sum_probs=64.4
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe---EEEEc-CCCCCCCCCCCccEEEec
Q 019684 107 LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC---KIVEG-DAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 107 ~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~-d~~~~~~~~~~fD~i~~~ 182 (337)
+.+++.+|||+||+.|.|+..+++..+...|.|.++.... ....-.....++ .|+++ |+.++. ...+|+|+|-
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSD 146 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCD 146 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEEC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeC
Confidence 4468999999999999999998887322344555554331 000000000233 45556 987643 4579999996
Q ss_pred ccccccCCHH-------HHHHHHHHhccCCC-EEEEEcCC
Q 019684 183 GSIEYWPDPQ-------RGIREAYRVLKLGG-KACIIGPV 214 (337)
Q Consensus 183 ~~l~~~~~~~-------~~l~~~~~~LkpgG-~l~i~~~~ 214 (337)
..-. ..+.. .++.-+.++|+||| .+++--..
T Consensus 147 MAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 147 IGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 6543 33321 24666779999999 88775443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.7e-06 Score=75.58 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=84.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-----CCCeEEEEeCCHH--------------------------HHHHHHhhCC---
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPH--------------------------QLAKAKQKEP--- 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~--------------------------~~~~a~~~~~--- 155 (337)
..+.|||+||..|..++.++... ++.+++++|..+. .++.++++..
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 46799999999999998887654 3688999996421 2444555421
Q ss_pred --CCCeEEEEcCCCC-CC-CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccC
Q 019684 156 --LKECKIVEGDAED-LP-FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231 (337)
Q Consensus 156 --~~~~~~~~~d~~~-~~-~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 231 (337)
..+++++.+|+.+ ++ .++++||+|+.-.-. .......++.+...|+|||.+++-+......
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G------------- 250 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDYMMCPP------------- 250 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSCTTCHH-------------
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCCCCCHH-------------
Confidence 3679999999943 44 445689999986532 1223468999999999999998766521000
Q ss_pred CCHHHHHHHHHhCCCc
Q 019684 232 PKEEEYIEWFQKAGFK 247 (337)
Q Consensus 232 ~~~~~~~~~l~~aGF~ 247 (337)
...-+.+.+++.|.+
T Consensus 251 -~~~Av~Ef~~~~~i~ 265 (282)
T 2wk1_A 251 -CKDAVDEYRAKFDIA 265 (282)
T ss_dssp -HHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHhcCCc
Confidence 134566677777765
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.2e-05 Score=68.99 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=71.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHH--hhCCCCCeEEEEc-CCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK--QKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~--~~~~~~~~~~~~~-d~~~~~~~~~~fD~i~~~~~l 185 (337)
.++.+|||+||++|.|+..++...+..+|+|+|+...-.+.-+ +.+..+.+.+..+ |+..++. ..+|.|+|.-.
T Consensus 93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig- 169 (321)
T 3lkz_A 93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG- 169 (321)
T ss_dssp CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC-
T ss_pred CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc-
Confidence 4778999999999999998888866667999999654211000 0111123778877 8766653 56999999766
Q ss_pred cccCCHH-------HHHHHHHHhccCC-CEEEEEc
Q 019684 186 EYWPDPQ-------RGIREAYRVLKLG-GKACIIG 212 (337)
Q Consensus 186 ~~~~~~~-------~~l~~~~~~Lkpg-G~l~i~~ 212 (337)
+.-+++. ++|+-+.+.|++| |-+++--
T Consensus 170 eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KV 204 (321)
T 3lkz_A 170 ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKV 204 (321)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEE
Confidence 6666653 3566667889999 8887743
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.4e-07 Score=103.19 Aligned_cols=142 Identities=21% Similarity=0.185 Sum_probs=69.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-----CCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-CCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~i~~~~ 183 (337)
+..+|||||.|+|..+..+.+... ..+++.+|+|+...+.++++...-++.....|..+. ++...+||+|++.+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 567999999999987665554432 247899999988877777553222233322243332 34456799999999
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHh---hhhh---hhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLS---RYFA---DVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
++|..++....++++++.|||||++++.+.... ..+. .++. .....+.+.++|.++|+++||..++..
T Consensus 1320 vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~-~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~~~ 1393 (2512)
T 2vz8_A 1320 ALATLGDPAVAVGNMAATLKEGGFLLLHTLLAG-HPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVALK 1393 (2512)
T ss_dssp C--------------------CCEEEEEEC---------------------------CTTTTSSTTTTEEEEEEE
T ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEecccc-ccccccccccccccccCCcccCHHHHHHHHHhCCCceeeec
Confidence 998888889999999999999999988764321 0000 0000 011233566778888999999987764
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.6e-05 Score=65.42 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHH--hhCCCCCeEEEEc-CCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK--QKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~--~~~~~~~~~~~~~-d~~~~~~~~~~fD~i~~~~~l 185 (337)
.++.+|||+||++|.|+..++...+..+|+|+|+...-.+.-+ +...-+.++|..+ |+..++- .++|.|+|.-.-
T Consensus 77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIge 154 (267)
T 3p8z_A 77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIGE 154 (267)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEEEECCCC
T ss_pred CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccccEEEEecCC
Confidence 4788999999999999998888876678999999654331100 1112256899998 9755443 569999986554
Q ss_pred cccCCHH-------HHHHHHHHhccCCCEEEEEc
Q 019684 186 EYWPDPQ-------RGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 186 ~~~~~~~-------~~l~~~~~~LkpgG~l~i~~ 212 (337)
.-+++. ++|+-+.+.|++ |-+++--
T Consensus 155 -Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 155 -SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp -CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred -CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence 444442 356666788998 7776643
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00017 Score=69.87 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=76.1
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-------------CCCeEEEEeCCHHHHHHHHhhCC---CCCeEE
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-------------DAKNVTILDQSPHQLAKAKQKEP---LKECKI 161 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-------------~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~ 161 (337)
.+.+++.+.. .++.+|+|.+||+|.++....+.. ....++|+|+++.+...|+.+.. .....+
T Consensus 206 v~lmv~l~~p-~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMDP-QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhcc-CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 3333333333 467899999999999988765432 12469999999999999986521 122356
Q ss_pred EEcCCCCCCC----CCCCccEEEecccccccC---------------CH-HHHHHHHHHhcc-------CCCEEEEEcC
Q 019684 162 VEGDAEDLPF----PTDYADRYVSAGSIEYWP---------------DP-QRGIREAYRVLK-------LGGKACIIGP 213 (337)
Q Consensus 162 ~~~d~~~~~~----~~~~fD~i~~~~~l~~~~---------------~~-~~~l~~~~~~Lk-------pgG~l~i~~~ 213 (337)
..+|....+. ...+||+|+++--+.--. +. ..++..+.+.|| |||++.++-+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 6777654432 234799999964432110 11 246788888887 7999988755
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.68 E-value=4e-05 Score=69.08 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=63.2
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--CC---
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--FP--- 172 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--~~--- 172 (337)
.++++.+.. .++..++|..||.|..+..+++.+ |..+|+|+|.++.+++.++ ++...+++++++++.++. ..
T Consensus 47 ~Evl~~L~i-~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 47 DEAVNGLNI-RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TIDDPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp HHHHHHTCC-CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHhhCC-CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhcCCcEEEEeCCHHHHHHHHHhcC
Confidence 334444444 378999999999999999999886 5789999999999999995 555578999999987653 11
Q ss_pred -CCCccEEEe
Q 019684 173 -TDYADRYVS 181 (337)
Q Consensus 173 -~~~fD~i~~ 181 (337)
.+++|.|+.
T Consensus 125 ~~~~vDgILf 134 (347)
T 3tka_A 125 LIGKIDGILL 134 (347)
T ss_dssp CTTCEEEEEE
T ss_pred CCCcccEEEE
Confidence 135899887
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.64 E-value=6.9e-05 Score=67.23 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=49.4
Q ss_pred CcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC
Q 019684 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (337)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 154 (337)
......+...++.... .++..|||++||+|..+..++.. +.+++|+|+++.+++.|++++
T Consensus 218 ~~~p~~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 218 APFPLELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERF 277 (297)
T ss_dssp CCSCHHHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH
Confidence 3445566666666554 47899999999999999998887 789999999999999999874
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00026 Score=64.42 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=97.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC------------------------CCCeEEEEcC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------------------LKECKIVEGD 165 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~------------------------~~~~~~~~~d 165 (337)
+...|+.+|||.......+....++.+++-+|. |+.++.-++.+. ..+..++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 457899999999999988887666788899998 777766554321 2567889999
Q ss_pred CCCCC--------C-CCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCC---chhHh----hhhhh-
Q 019684 166 AEDLP--------F-PTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP---TFWLS----RYFAD- 226 (337)
Q Consensus 166 ~~~~~--------~-~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~~----~~~~~- 226 (337)
+.+.. . ..+...++++-.++.+++.. .++++.+.+.. |+|.+++.+...+ ..... ..+..
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~~ 254 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKES 254 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhcc
Confidence 97631 1 22457889999999998754 46888888877 7887766654433 11111 11111
Q ss_pred h---h---ccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 227 V---W---MLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 227 ~---~---~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
. + ..+.+.++..+.|+++||+ ...++.
T Consensus 255 rg~~l~~~~~y~s~~~~~~rl~~~Gf~--~a~d~~ 287 (334)
T 1rjd_A 255 RNLEMPTLMTYNSKEKYASRWSAAPNV--IVNDMW 287 (334)
T ss_dssp HCCCCTTTTTTCSHHHHHGGGTTSSEE--EEEEHH
T ss_pred cCCcccccccCCCHHHHHHHHHHCCCC--cccCHH
Confidence 1 1 1346899999999999997 455554
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00022 Score=65.32 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=59.0
Q ss_pred HHHHHHhccccCCCC-----CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC
Q 019684 95 EDMRDDALEPADLSN-----RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL 169 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~-----~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~ 169 (337)
..+.+.+++.+.+.+ ++..|||||.|.|.++..|++.....+|+++|+++..+...++.....+++++.+|+.++
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 445555565555432 368999999999999999998643568999999999999998876456899999999654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0014 Score=58.51 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=79.0
Q ss_pred CCCEEEEEcCcccHHHHHHH----hhCCCC--eEEEEeCCH------------HHHHHHHhhCC---CCC--eEEEEcCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIV----KHVDAK--NVTILDQSP------------HQLAKAKQKEP---LKE--CKIVEGDA 166 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~----~~~~~~--~v~gvD~s~------------~~~~~a~~~~~---~~~--~~~~~~d~ 166 (337)
+.-+|||+|-|+|....... +..|.. +++.+|..+ ...+...++.. ..+ +++..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 34589999999998764332 233444 456666421 22222222221 123 56778898
Q ss_pred CC-CC-CCCCCccEEEecccccccCCH----HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHH
Q 019684 167 ED-LP-FPTDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240 (337)
Q Consensus 167 ~~-~~-~~~~~fD~i~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (337)
.+ ++ +.+..||+|+.-. +.--.+| ..++++++++++|||.+.- . .....++..
T Consensus 176 ~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Y------------------taag~VRR~ 234 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS--Y------------------SSSLSVRKS 234 (308)
T ss_dssp HHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--S------------------CCCHHHHHH
T ss_pred HHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE--E------------------eCcHHHHHH
Confidence 43 33 3445799999753 2222333 4899999999999999863 2 234567889
Q ss_pred HHhCCCcEEEEEEcCc
Q 019684 241 FQKAGFKDVQLKRIGP 256 (337)
Q Consensus 241 l~~aGF~~v~~~~~~~ 256 (337)
|+++||++....-.+.
T Consensus 235 L~~aGF~V~k~~G~g~ 250 (308)
T 3vyw_A 235 LLTLGFKVGSSREIGR 250 (308)
T ss_dssp HHHTTCEEEEEECC--
T ss_pred HHHCCCEEEecCCCCC
Confidence 9999999888776653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00069 Score=59.37 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=48.7
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
.....+.+.++.... .++..|||..||+|..+....+. +.+++|+|+++..++.+++++.
T Consensus 196 ~~p~~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 196 PKPRDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CCCHHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHH
Confidence 334556666655543 47899999999999999998877 7899999999999999998764
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0031 Score=55.40 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=72.5
Q ss_pred CCCCEEEEEcC------cccHHHHHHHhhCCC-CeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 109 NRNMLVVDVGG------GTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGc------G~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
+.+++|||+|+ -+|.+ .+.+..|. +.|+++|+.+-.. ..+ .++++|...... .++||+|+|
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s--------da~-~~IqGD~~~~~~-~~k~DLVIS 175 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS--------DAD-STLIGDCATVHT-ANKWDLIIS 175 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC--------SSS-EEEESCGGGEEE-SSCEEEEEE
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc--------CCC-eEEEcccccccc-CCCCCEEEe
Confidence 47899999996 56774 33444554 6999999965331 122 559999765333 467999999
Q ss_pred cccc---ccc--CC------HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 182 AGSI---EYW--PD------PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 182 ~~~l---~~~--~~------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
-..- .+. +. -+.++.=+.++|+|||.|++--+.... .+.+.++. + -|+.+.
T Consensus 176 DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg----------------~~~L~~lr-k-~F~~VK 237 (344)
T 3r24_A 176 DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW----------------NADLYKLM-G-HFSWWT 237 (344)
T ss_dssp CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC----------------CHHHHHHH-T-TEEEEE
T ss_pred cCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC----------------HHHHHHHH-h-hCCeEE
Confidence 4221 111 11 135677788999999999886433221 12344443 3 788887
Q ss_pred EEE
Q 019684 251 LKR 253 (337)
Q Consensus 251 ~~~ 253 (337)
...
T Consensus 238 ~fK 240 (344)
T 3r24_A 238 AFV 240 (344)
T ss_dssp EEE
T ss_pred EEC
Confidence 775
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0024 Score=56.16 Aligned_cols=122 Identities=12% Similarity=0.117 Sum_probs=89.7
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCC-CC---CCCCCccEEEecccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAED-LP---FPTDYADRYVSAGSI 185 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~-~~---~~~~~fD~i~~~~~l 185 (337)
+..+||+=+|||.+++.+... +.+++.+|.++...+..+++... .+++++..|... +. -+..+||+|++-=-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 466999999999999998884 68999999999999999998765 468899999632 21 223469999987666
Q ss_pred cccCCHHHHHHHHHH--hccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcE
Q 019684 186 EYWPDPQRGIREAYR--VLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 248 (337)
+.-.+..++++.+.+ .+.|+|.+++--+...... .+.+.+-|++.|...
T Consensus 170 e~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~--------------~~~~~~~l~~~~~~~ 220 (283)
T 2oo3_A 170 ERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAW--------------TEQFLRKMREISSKS 220 (283)
T ss_dssp CSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHH--------------HHHHHHHHHHHCSSE
T ss_pred CCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHH--------------HHHHHHHHHhcCCCe
Confidence 544456677777766 4568999998665544321 345666777777733
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0096 Score=53.46 Aligned_cols=141 Identities=14% Similarity=0.200 Sum_probs=93.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCCCC--------CCCCCcc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDLP--------FPTDYAD 177 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~--------~~~~~fD 177 (337)
..|+++|||-=..+..+.. .++.+++-+|. |..++..++.+. ..+..++.+|+.+-. +....-=
T Consensus 104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW-PTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC-CTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccC-CCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence 5699999997666554432 12478999995 999888877653 356788999997621 1112344
Q ss_pred EEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCc-hh---Hh----hhhhhh----------hccCCC-HHH
Q 019684 178 RYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPT-FW---LS----RYFADV----------WMLFPK-EEE 236 (337)
Q Consensus 178 ~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~-~~---~~----~~~~~~----------~~~~~~-~~~ 236 (337)
++++-.+++|+++. ..+++.+...+.||+.+++....... .. .. ..+... +..+.+ .++
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~ 261 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAV 261 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChHH
Confidence 77788899998764 47899999999999999887544321 11 11 111111 111235 789
Q ss_pred HHHHHHhCCCcEEEEEEcC
Q 019684 237 YIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 237 ~~~~l~~aGF~~v~~~~~~ 255 (337)
..+.|.++||+.+ .....
T Consensus 262 ~~~~f~~~G~~~~-~~~~~ 279 (310)
T 2uyo_A 262 VADWLNRHGWRAT-AQSAP 279 (310)
T ss_dssp HHHHHTTTTEEEE-EEEHH
T ss_pred HHHHHHHCcCccc-cCCHH
Confidence 9999999999988 54443
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.072 Score=48.20 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=95.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhh-CCCCeEEEEeCCHHHHHHHHhhC--------------------------CCCCeEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKE--------------------------PLKECKIV 162 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~--------------------------~~~~~~~~ 162 (337)
+...|+-+|||.=.....+... .++.+++=+|. |+.++.=++.+ ...+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4578999999988777777654 24678889998 65554322211 13567889
Q ss_pred EcCCCCCC----------CCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh-h--
Q 019684 163 EGDAEDLP----------FPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-V-- 227 (337)
Q Consensus 163 ~~d~~~~~----------~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~-- 227 (337)
..|+.+.. +....-=++++-.++.+++.. ..+++.+.+... +|.+++.++..+.....+.+.. .
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~fg~~M~~~l~~ 247 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDRFGQIMIENLRR 247 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCHHHHHHHHHHHH
Confidence 99986631 223344578888888888754 468888887765 5555555655443222221111 1
Q ss_pred -------hccCCCHHHHHHHHHhCCCcEEEEEEcCccc
Q 019684 228 -------WMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (337)
Q Consensus 228 -------~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 258 (337)
...+.+.++..+.|.++||+.++..++...|
T Consensus 248 ~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~ 285 (334)
T 3iei_A 248 RQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELY 285 (334)
T ss_dssp TTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHHHHH
T ss_pred hCCCCcccccCCCHHHHHHHHHHcCCCcceeecHHHHH
Confidence 1134678999999999999998888876444
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.012 Score=58.73 Aligned_cols=126 Identities=20% Similarity=0.268 Sum_probs=82.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-------C-----CCeEEEEeC---CHHHHHHHHhh--------------C------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQ---SPHQLAKAKQK--------------E------ 154 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~---s~~~~~~a~~~--------------~------ 154 (337)
+.-+|+|+|.|+|.....+.+.. | ..+++.+|. +.+.+..+-+. .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 44689999999999887765532 1 167999998 66666553321 0
Q ss_pred ------CCC--CeEEEEcCCCC-CC-CC---CCCccEEEeccccccc-CCH--HHHHHHHHHhccCCCEEEEEcCCCCch
Q 019684 155 ------PLK--ECKIVEGDAED-LP-FP---TDYADRYVSAGSIEYW-PDP--QRGIREAYRVLKLGGKACIIGPVYPTF 218 (337)
Q Consensus 155 ------~~~--~~~~~~~d~~~-~~-~~---~~~fD~i~~~~~l~~~-~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~ 218 (337)
... .+++..+|+.+ ++ +. +..+|+++.-..-..- ++. ..++..+.++++|||.+.-..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------ 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC------
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 011 35677888843 33 21 4679999975422111 221 579999999999999876322
Q ss_pred hHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 219 WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....+++.|.++||.+......+
T Consensus 212 --------------~~~~vr~~l~~aGf~~~~~~~~~ 234 (689)
T 3pvc_A 212 --------------AAGFVRRGLQQAGFNVTKVKGFG 234 (689)
T ss_dssp --------------CCHHHHHHHHHTTCEEEEEECSS
T ss_pred --------------CcHHHHHHHHhCCeEEEeccCCC
Confidence 22467789999999988776443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.023 Score=52.68 Aligned_cols=101 Identities=24% Similarity=0.268 Sum_probs=70.6
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-CC------CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~------~~~~~fD~i~ 180 (337)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++... +.+..+-.+ +. .....+|+|+
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF----EIADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----EEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC----cEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 4789999999975 8888899888643379999999999999986532 322211111 00 1123599998
Q ss_pred eccccc---------ccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIE---------YWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-...-. |.+++...++++.+.|++||++++...
T Consensus 260 d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred ECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence 654321 334555688999999999999988653
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=54.94 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-C-----C-CCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-P-----F-PTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~-----~-~~~~fD~i 179 (337)
.++++||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++.. .+.+..+-.+. . . ....+|+|
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lG----a~~i~~~~~~~~~~~~~~~~~g~g~Dvv 258 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAG----FETIDLRNSAPLRDQIDQILGKPEVDCG 258 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTT----CEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC----CcEEcCCCcchHHHHHHHHhCCCCCCEE
Confidence 4789999999986 88888888875 55 9999999999999988643 23332211121 0 1 12259999
Q ss_pred Eeccccccc--------CCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYW--------PDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+-...-... .++...++++.+.|++||++++...
T Consensus 259 id~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 259 VDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp EECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred EECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 865433210 0123578899999999999987654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=58.91 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=68.2
Q ss_pred ccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCc
Q 019684 104 PADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYA 176 (337)
Q Consensus 104 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~f 176 (337)
...+ +++++||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++.... .++..+-.++ ...++.+
T Consensus 185 ~~~~-~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~~~~~gg~ 259 (371)
T 1f8f_A 185 ALKV-TPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGAT---HVINSKTQDPVAAIKEITDGGV 259 (371)
T ss_dssp TTCC-CTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTSCE
T ss_pred ccCC-CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCC---EEecCCccCHHHHHHHhcCCCC
Confidence 3344 4789999999986 88888888875 55 799999999999999876431 1222111111 0112369
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+|+-... ....++.+.+.|+|||++++...
T Consensus 260 D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 260 NFALESTG------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp EEEEECSC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred cEEEECCC------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 99985432 13578889999999999988754
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.016 Score=57.74 Aligned_cols=125 Identities=21% Similarity=0.249 Sum_probs=81.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-------C-----CCeEEEEeC---CHHHHHHHHhh--------------CCC----
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQ---SPHQLAKAKQK--------------EPL---- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~---s~~~~~~a~~~--------------~~~---- 156 (337)
+.-+|||+|-|+|.......+.. | ..+++++|. +.+.+..+-+. ...
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34689999999999877664432 1 257899998 77777744331 110
Q ss_pred ----------CCeEEEEcCCCC-CC-CC---CCCccEEEecccccccCCH----HHHHHHHHHhccCCCEEEEEcCCCCc
Q 019684 157 ----------KECKIVEGDAED-LP-FP---TDYADRYVSAGSIEYWPDP----QRGIREAYRVLKLGGKACIIGPVYPT 217 (337)
Q Consensus 157 ----------~~~~~~~~d~~~-~~-~~---~~~fD~i~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~ 217 (337)
..+++..+|+.+ ++ +. +..||+++.-..- --.++ ..+++++.++++|||.+.-..
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~-p~~np~~w~~~~~~~l~~~~~~g~~~~t~~----- 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFA-PAKNPDMWTQNLFNAMARLARPGGTLATFT----- 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSC-GGGCGGGSCHHHHHHHHHHEEEEEEEEESC-----
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCC-CcCChhhhhHHHHHHHHHHhCCCCEEEecc-----
Confidence 124456677733 22 11 3679999974422 12233 479999999999999986432
Q ss_pred hhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 218 FWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....++..|.++||.+......+
T Consensus 220 ---------------~~~~vr~~L~~aGf~v~~~~~~g 242 (676)
T 3ps9_A 220 ---------------SAGFVRRGLQDAGFTMQKRKGFG 242 (676)
T ss_dssp ---------------CCHHHHHHHHHHTCEEEEEECST
T ss_pred ---------------CcHHHHHHHHhCCeEEEeccccc
Confidence 22457788999999987765443
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0033 Score=57.11 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~ 183 (337)
+++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++... . ..+..+-.+.. ...+.+|+|+-..
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~~i~~~~~~~~~~~~~~~g~~d~vid~~ 240 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGA-E--VAVNARDTDPAAWLQKEIGGAHGVLVTA 240 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCC-C--EEEeCCCcCHHHHHHHhCCCCCEEEEeC
Confidence 4789999999985 88999998886 6799999999999999987542 1 11211111110 0113588887542
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
. -...++.+.+.|+|+|++++....
T Consensus 241 g------~~~~~~~~~~~l~~~G~iv~~G~~ 265 (340)
T 3s2e_A 241 V------SPKAFSQAIGMVRRGGTIALNGLP 265 (340)
T ss_dssp C------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred C------CHHHHHHHHHHhccCCEEEEeCCC
Confidence 2 235788899999999999987543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.1 Score=47.03 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=82.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC--Ce-E-EEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC---CCCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDA--KN-V-TILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~--~~-v-~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~---~~~~fD~i~~~ 182 (337)
...+++|+-||.|.+...+.+. + .+ + .++|+++.+.+..+.|.... ++.+|+.++.. +...+|+++..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~a--G~~~~~v~~a~e~d~~a~~ty~~N~~~~---~~~~DI~~~~~~~i~~~~~Dil~gg 83 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERS--SININATFIPFDINEIANKIYSKNFKEE---VQVKNLDSISIKQIESLNCNTWFMS 83 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHS--SCCCCEEEEEECCCHHHHHHHHHHHCCC---CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred CCCEEEEECCChhHHHHHHHHc--CCCceEEEEEEECCHHHHHHHHHHCCCC---cccCChhhcCHHHhccCCCCEEEec
Confidence 4568999999999999998876 4 24 5 69999999999988886432 56788877642 22358999974
Q ss_pred cccccc-----------CCHH-HHHHHHHH-hccC---CCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 183 GSIEYW-----------PDPQ-RGIREAYR-VLKL---GGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 183 ~~l~~~-----------~~~~-~~l~~~~~-~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
.--..+ .|.. .++.++.+ +++. .-.+++.|....-.. . .+.+.+.+.|++.||
T Consensus 84 pPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~-~----------~~~~~i~~~l~~~GY 152 (327)
T 3qv2_A 84 PPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE-S----------LVFKEIYNILIKNQY 152 (327)
T ss_dssp CCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG-S----------HHHHHHHHHHHHTTC
T ss_pred CCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC-h----------HHHHHHHHHHHhCCC
Confidence 332222 3433 46666666 5532 123444443322110 0 134678889999999
Q ss_pred cEEEEEEcCc
Q 019684 247 KDVQLKRIGP 256 (337)
Q Consensus 247 ~~v~~~~~~~ 256 (337)
.+... .+..
T Consensus 153 ~v~~~-vl~a 161 (327)
T 3qv2_A 153 YIKDI-ICSP 161 (327)
T ss_dssp EEEEE-EECG
T ss_pred EEEEE-EEeH
Confidence 86444 3443
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.03 Score=51.21 Aligned_cols=97 Identities=21% Similarity=0.176 Sum_probs=68.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC--CCC------CCCCCccE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAE--DLP------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~--~~~------~~~~~fD~ 178 (337)
+++++||-+|+|. |..+..+++.. +++ |+++|.+++.++.+++. ...-+.+...+.. ++. .....+|+
T Consensus 178 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dv 255 (363)
T 3m6i_A 178 RLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAV 255 (363)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCE
Confidence 4789999999975 88888888886 555 99999999999999987 3233333321111 100 12346999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+-... -...+..+.+.|++||++++...
T Consensus 256 vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 256 ALECTG------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp EEECSC------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred EEECCC------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 985332 23467889999999999998754
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0074 Score=55.17 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcC---CCC----CC-CCCCCccE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGD---AED----LP-FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d---~~~----~~-~~~~~fD~ 178 (337)
.++++||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++... . ..+..+ ..+ +. ...+.+|+
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~~i~~~~~~g~D~ 245 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGA-D--LVLQISKESPQEIARKVEGQLGCKPEV 245 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTC-S--EEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-C--EEEcCcccccchHHHHHHHHhCCCCCE
Confidence 4789999999985 88888888876 55 99999999999999986533 1 122211 000 00 01145999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+-... ....+....+.|+|||++++...
T Consensus 246 vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 246 TIECTG------AEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp EEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEECCC------ChHHHHHHHHHhcCCCEEEEEec
Confidence 985432 13467888999999999988754
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0063 Score=56.03 Aligned_cols=96 Identities=20% Similarity=0.314 Sum_probs=67.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C---CCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P---FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~---~~~~~fD~i 179 (337)
+++++||-+|+|. |..+..+++..+..+|+++|.++...+.+++.... ..+..+-.++ . ...+.+|+|
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~i~~~~~~~~gg~Dvv 257 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT---ATVDPSAGDVVEAIAGPVGLVPGGVDVV 257 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS---EEECTTSSCHHHHHHSTTSSSTTCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC---EEECCCCcCHHHHHHhhhhccCCCCCEE
Confidence 4789999999975 88888888886434999999999999999876431 1111111110 0 223469999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+-... ....++.+.+.|++||++++...
T Consensus 258 id~~G------~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 258 IECAG------VAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp EECSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEEec
Confidence 85422 23578889999999999998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.016 Score=52.74 Aligned_cols=95 Identities=19% Similarity=0.274 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC-CCCCC------CC---CCCcc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-AEDLP------FP---TDYAD 177 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d-~~~~~------~~---~~~fD 177 (337)
+++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++... . ..+..+ -.+.. .. ...+|
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~~~~~~~~~~~~~~i~~~~~~~~g~g~D 242 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA-D--VTLVVDPAKEEESSIIERIRSAIGDLPN 242 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC-S--EEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCC-C--EEEcCcccccHHHHHHHHhccccCCCCC
Confidence 4789999999875 78888888875 6789999999999999986533 1 122211 01110 11 24599
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|+-... ....++...+.|+|+|++++...
T Consensus 243 ~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 243 VTIDCSG------NEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 9985432 13467888999999999988754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.016 Score=52.71 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
+++++||-+|+|. |..+..+++.. +++|+++|.+++.++.+++... .. ++ .|...+ .. .+|+|+-...-.
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~~--v~-~~~~~~--~~-~~D~vid~~g~~- 245 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGV-KH--FY-TDPKQC--KE-ELDFIISTIPTH- 245 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTC-SE--EE-SSGGGC--CS-CEEEEEECCCSC-
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCC-Ce--ec-CCHHHH--hc-CCCEEEECCCcH-
Confidence 4789999999985 88888888876 6799999999999999987532 21 22 332222 22 699998543221
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
..+..+.+.|+|+|++++.....
T Consensus 246 -----~~~~~~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 246 -----YDLKDYLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp -----CCHHHHHTTEEEEEEEEECCCCC
T ss_pred -----HHHHHHHHHHhcCCEEEEECCCC
Confidence 25677889999999999875433
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0069 Score=55.08 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----C-CCCCccEEEe
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----F-PTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~-~~~~fD~i~~ 181 (337)
.++++||-+|+|. |..+..+++...+.+|+++|.+++.++.+++.... .++..+ .+.. . ....+|+|+-
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~---~~i~~~-~~~~~~v~~~t~g~g~d~v~d 245 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD---AAVKSG-AGAADAIRELTGGQGATAVFD 245 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS---EEEECS-TTHHHHHHHHHGGGCEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC---EEEcCC-CcHHHHHHHHhCCCCCeEEEE
Confidence 4789999999975 88888888876678999999999999999875431 122211 1110 1 1236998885
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
... -...++.+.+.|++||++++....
T Consensus 246 ~~G------~~~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 246 FVG------AQSTIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp SSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred CCC------CHHHHHHHHHHHhcCCEEEEECCC
Confidence 322 234788999999999999987543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0074 Score=50.07 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=62.3
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~ 178 (337)
+++++||..|+ |.|..+..++... +.+|+++|.+++..+.+++... . .. .|..+.. .....+|+
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~--~-~~--~d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGV--E-YV--GDSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCC--S-EE--EETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC--C-EE--eeCCcHHHHHHHHHHhCCCCCeE
Confidence 37899999994 5677766666653 6799999999988887765321 1 11 1332211 11235999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
++.+.. ...++.+.+.|+|||++++...
T Consensus 111 vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 111 VLNSLA-------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred EEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence 986432 1467889999999999988754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0069 Score=55.26 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=68.7
Q ss_pred cccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----C-CCCCC
Q 019684 103 EPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----P-FPTDY 175 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~-~~~~~ 175 (337)
+...+ +++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++.... .++..+-.++ . .....
T Consensus 160 ~~~~~-~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~v~~~t~g~g 235 (352)
T 3fpc_A 160 ELANI-KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT---DIINYKNGDIVEQILKATDGKG 235 (352)
T ss_dssp HHTTC-CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC---EEECGGGSCHHHHHHHHTTTCC
T ss_pred HhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc---eEEcCCCcCHHHHHHHHcCCCC
Confidence 33444 4789999999985 88888888875333899999999999999876431 1221111111 0 12235
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+|+|+-...- ...++.+.+.|+|||++++....
T Consensus 236 ~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 236 VDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp EEEEEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CCEEEECCCC------hHHHHHHHHHHhcCCEEEEeccc
Confidence 9999853221 24678899999999999987543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.044 Score=50.49 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=54.6
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC--------CCCCccEEEec
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF--------PTDYADRYVSA 182 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~--------~~~~fD~i~~~ 182 (337)
.+|+|+-||.|.++..+... +.+ +.++|+++.+.+..+.|.. +..++.+|+.++.. ....+|+|+..
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~--~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP--RSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG 78 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT--TSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC--CCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence 57999999999999999887 665 5599999999999998864 56788899876531 23569999974
Q ss_pred c
Q 019684 183 G 183 (337)
Q Consensus 183 ~ 183 (337)
.
T Consensus 79 p 79 (376)
T 3g7u_A 79 P 79 (376)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.02 Score=53.42 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=45.1
Q ss_pred CCCCEEEEEcCcccHHHHHHH-hhCCC-CeEEEEeCCHHHHHHHHhhCCC-------CCeEEEEcC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIV-KHVDA-KNVTILDQSPHQLAKAKQKEPL-------KECKIVEGD 165 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~-~~~~~-~~v~gvD~s~~~~~~a~~~~~~-------~~~~~~~~d 165 (337)
+++..|+|||++.|.++..++ +..+. .+|+++|++|...+..+++... .+++++..-
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~a 290 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCG 290 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeE
Confidence 578999999999999999888 55543 7999999999999988876432 456655443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.019 Score=52.72 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC----CCCCCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD----AEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d----~~~~~~~~~~fD~i~~~~ 183 (337)
+++++||-+|+|. |..+..+++.. +++|+++|.+++.++.+++... . .++..+ ..++ . +.+|+|+-..
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~--~-~g~Dvvid~~ 265 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGA-D--EVVNSRNADEMAAH--L-KSFDFILNTV 265 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTC-S--EEEETTCHHHHHTT--T-TCEEEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC-c--EEeccccHHHHHHh--h-cCCCEEEECC
Confidence 4789999999985 88888888875 6789999999999998887532 1 122111 1111 1 4699998543
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.-. ..++.+.+.|+|+|+++....
T Consensus 266 g~~------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 266 AAP------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp SSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCH------HHHHHHHHHhccCCEEEEecc
Confidence 321 246678899999999988654
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.081 Score=48.36 Aligned_cols=92 Identities=16% Similarity=0.238 Sum_probs=65.6
Q ss_pred CCCEEEEEc-Cc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-C-----CCCCCCccEEEe
Q 019684 110 RNMLVVDVG-GG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-----PFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~-----~~~~~~fD~i~~ 181 (337)
++++||-+| +| .|..+..+++...+.+|+++|.+++.++.+++... . .++ |..+ + ....+.+|+|+-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa-d--~vi--~~~~~~~~~v~~~~~~g~Dvvid 245 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA-H--HVI--DHSKPLAAEVAALGLGAPAFVFS 245 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC-S--EEE--CTTSCHHHHHHTTCSCCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC-C--EEE--eCCCCHHHHHHHhcCCCceEEEE
Confidence 678999998 54 58899999886557899999999999999987532 1 111 1111 0 122346998885
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. .-...++.+.+.|+|+|++++..
T Consensus 246 ~~------g~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 246 TT------HTDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp CS------CHHHHHHHHHHHSCTTCEEEECS
T ss_pred CC------CchhhHHHHHHHhcCCCEEEEEC
Confidence 32 23357888999999999999874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.086 Score=48.12 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=68.5
Q ss_pred ccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCc
Q 019684 104 PADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYA 176 (337)
Q Consensus 104 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~f 176 (337)
...+ +++++||-+|+|. |..+..+++.. +++|+++|.+++.++.+++... . ..+..+..++. .....+
T Consensus 184 ~~~~-~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa--~-~vi~~~~~~~~~~v~~~~~g~g~ 258 (363)
T 3uog_A 184 KGHL-RAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGA--D-HGINRLEEDWVERVYALTGDRGA 258 (363)
T ss_dssp TTCC-CTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTC--S-EEEETTTSCHHHHHHHHHTTCCE
T ss_pred hcCC-CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCC--C-EEEcCCcccHHHHHHHHhCCCCc
Confidence 3444 4889999999885 88888888875 6799999999999999887643 1 12222211110 122369
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+|+-...- ..+..+.+.|+|||++++....
T Consensus 259 D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 259 DHILEIAGG-------AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp EEEEEETTS-------SCHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEECCCh-------HHHHHHHHHhhcCCEEEEEecC
Confidence 999865431 2467788999999999987543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.041 Score=49.62 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=48.1
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 156 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 156 (337)
....+.+.++.... .+++.|||.-||+|..+....+. +.+.+|+|+++...+.++++...
T Consensus 237 kp~~l~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 237 FPAKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp CCTHHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred CCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 33455555554432 47899999999999999987777 78999999999999999988653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.044 Score=50.93 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~~ 181 (337)
.++++||=+|+|. |..+..+++..+..+|+++|.++..++.+++.... .++..+-.++. .....+|+|+-
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~i~~~t~g~g~D~vid 288 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD---HVIDPTKENFVEAVLDYTNGLGAKLFLE 288 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS---EEECTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC---EEEcCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 4789999999975 78888888876333999999999999999876431 11211111110 12236999884
Q ss_pred cccccccCCHHHHHHHHHHhc----cCCCEEEEEcCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVL----KLGGKACIIGPV 214 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L----kpgG~l~i~~~~ 214 (337)
. .......+..+.+.| ++||++++....
T Consensus 289 ~-----~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 289 A-----TGVPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp C-----SSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred C-----CCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 3 333434555566666 999999987643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.017 Score=53.23 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC--CCCC-----CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD--AEDL-----PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d--~~~~-----~~~~~~fD~i~ 180 (337)
+++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++.... .++... -.++ ...++.+|+|+
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~i~~~~~gg~D~vi 268 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN---EFVNPKDHDKPIQEVIVDLTDGGVDYSF 268 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC---EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---EEEccccCchhHHHHHHHhcCCCCCEEE
Confidence 4789999999974 88888888875333899999999999999865321 112111 0111 01223699998
Q ss_pred ecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
-... -...++.+.+.|++| |++++...
T Consensus 269 d~~g------~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 269 ECIG------NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCC------CHHHHHHHHHHhhccCCEEEEEcc
Confidence 5422 235788899999997 99998754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.011 Score=53.85 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=65.1
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE----cCC-CCCCCCCCCccEEEec
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVE----GDA-EDLPFPTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~----~d~-~~~~~~~~~fD~i~~~ 182 (337)
++++||-+|+|. |..+..+++.. |+.+|+++|.|++.++.+++... . .++. .|. .++. ....+|+|+-.
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~-~g~g~D~vid~ 245 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA-D--YVSEMKDAESLINKLT-DGLGASIAIDL 245 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTC-S--EEECHHHHHHHHHHHH-TTCCEEEEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCC-C--EEeccccchHHHHHhh-cCCCccEEEEC
Confidence 689999999974 77888888774 36799999999999999987542 1 1111 111 1111 12369999854
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... ...++.+.+.|+|||++++...
T Consensus 246 ~g~------~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 246 VGT------EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp SCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCC------hHHHHHHHHHhhcCCEEEEeCC
Confidence 321 3478889999999999988653
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.035 Score=50.53 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=78.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCC---CeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC---CCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~---~~~~fD~i~~~~~l 185 (337)
.+|+|+.||.|.+...+... + ..|.++|+++.+++..+.|.. +..++.+|+.++.. ....+|+|+...--
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~--G~~~~~v~~~E~d~~a~~~~~~N~~--~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPC 78 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES--CIPAQVVAAIDVNTVANEVYKYNFP--HTQLLAKTIEGITLEEFDRLSFDMILMSPPC 78 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH--TCSEEEEEEECCCHHHHHHHHHHCT--TSCEECSCGGGCCHHHHHHHCCSEEEECCC-
T ss_pred CeEEEeCcCccHHHHHHHHC--CCCceEEEEEeCCHHHHHHHHHhcc--ccccccCCHHHccHhHcCcCCcCEEEEcCCC
Confidence 57999999999999999887 4 258899999999999999875 34577889877541 11258999985332
Q ss_pred ccc---------CCHH-HHHHHHHHh---cc--CCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 186 EYW---------PDPQ-RGIREAYRV---LK--LGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 186 ~~~---------~~~~-~~l~~~~~~---Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
..+ .|.. .++.++.++ ++ |. .+++ +....-. . -.+.+.+.+.|++.||.+..
T Consensus 79 q~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~-~~~~-ENV~~l~--~---------~~~~~~i~~~l~~~GY~v~~ 145 (343)
T 1g55_A 79 QPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILL-ENVKGFE--V---------SSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp -----------------CHHHHHHHHGGGCSSCCS-EEEE-EEETTGG--G---------SHHHHHHHHHHHHTTEEEEE
T ss_pred cchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC-EEEE-eCCcccc--C---------HHHHHHHHHHHHHCCCeeEE
Confidence 111 2222 244444444 44 54 3333 2221110 0 01246778889999997644
Q ss_pred EEEcCcc
Q 019684 251 LKRIGPK 257 (337)
Q Consensus 251 ~~~~~~~ 257 (337)
..+...
T Consensus 146 -~vl~a~ 151 (343)
T 1g55_A 146 -FLLSPT 151 (343)
T ss_dssp -EEECGG
T ss_pred -EEEEHH
Confidence 334433
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.022 Score=52.26 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CC-CCC-----CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEG-DA-EDL-----PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~-~~~-----~~~~~~fD~i 179 (337)
.++++||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++... . .++.. +. .++ ....+.+|+|
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~i~~~t~gg~Dvv 265 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGA-T--ECLNPKDYDKPIYEVICEKTNGGVDYA 265 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHTTC-S--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCC-c--EEEecccccchHHHHHHHHhCCCCCEE
Confidence 4789999999875 78888888875 55 89999999999999886532 1 12211 10 111 0112369999
Q ss_pred EecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
+-... -...++.+.+.|+++ |++++...
T Consensus 266 id~~g------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 266 VECAG------RIETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp EECSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EECCC------CHHHHHHHHHHHhcCCCEEEEEcc
Confidence 85332 135678899999999 99988753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.052 Score=49.13 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC-CCC--CCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-DLP--FPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~--~~~~~fD~i~~~~~ 184 (337)
+++++||=+|+|. |.++..+++...+.+|+++|.+++-++.+++.....-+.....|.. .+. .....+|.++....
T Consensus 162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~ 241 (348)
T 4eez_A 162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAV 241 (348)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCS
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEecc
Confidence 4789999999986 4566666666668999999999999998887643221221111211 000 11234666664321
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-...+....+.|+++|++++...
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 242 ------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp ------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred ------CcchhheeheeecCCceEEEEec
Confidence 24578889999999999988754
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.13 Score=46.53 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC------CCCccEEEe
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP------TDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~------~~~fD~i~~ 181 (337)
.++++||-+|+| .|..+..+++.. +.+|+++|.+++.++.+++... . .+ .|..+..+. .+.+|+|+.
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~---~~-~d~~~~~~~~~~~~~~~~~d~vid 236 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGA-D---LV-VNPLKEDAAKFMKEKVGGVHAAVV 236 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTC-S---EE-ECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCC-C---EE-ecCCCccHHHHHHHHhCCCCEEEE
Confidence 478999999986 477888888775 6799999999999998876432 1 11 233221110 035899885
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.... ...++.+.+.|+++|++++....
T Consensus 237 ~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 263 (339)
T 1rjw_A 237 TAVS------KPAFQSAYNSIRRGGACVLVGLP 263 (339)
T ss_dssp SSCC------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCC------HHHHHHHHHHhhcCCEEEEeccc
Confidence 4321 34678899999999999887543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.1 Score=46.84 Aligned_cols=92 Identities=18% Similarity=0.037 Sum_probs=63.6
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-CC-------CCCCCccE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LP-------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~-------~~~~~fD~ 178 (337)
.++++||-.|+ |.|..+..++... +++|+++|.+++.++.+++... .. . .|..+ .. ...+.+|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~--~~-~--~d~~~~~~~~~~~~~~~~~~~d~ 217 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGF--DA-A--FNYKTVNSLEEALKKASPDGYDC 217 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC--SE-E--EETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCC--cE-E--EecCCHHHHHHHHHHHhCCCCeE
Confidence 47899999998 5677777777764 6799999999998888854321 11 1 13322 11 11246999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
++.+..- ..++.+.+.|++||++++...
T Consensus 218 vi~~~g~-------~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 218 YFDNVGG-------EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp EEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred EEECCCh-------HHHHHHHHHHhcCCEEEEEec
Confidence 8865432 357888999999999988653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.60 E-value=0.029 Score=51.47 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CC-CCC-----CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEG-DA-EDL-----PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~-~~~-----~~~~~~fD~i 179 (337)
+++++||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++... . ..+.. +. .++ ...++.+|+|
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~~~~~~~g~D~v 265 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGA-T--ECVNPQDYKKPIQEVLTEMSNGGVDFS 265 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC-S--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCC-c--eEecccccchhHHHHHHHHhCCCCcEE
Confidence 4789999999875 88888888876 55 89999999999998876432 1 11211 10 111 0112369998
Q ss_pred EecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
+-...- ...++...+.|+++ |++++...
T Consensus 266 id~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 266 FEVIGR------LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp EECSCC------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred EECCCC------HHHHHHHHHHhhcCCcEEEEecc
Confidence 854321 35678899999999 99988753
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.032 Score=51.26 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CC-CCCC-----CCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEG-DA-EDLP-----FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~-~~~~-----~~~~~fD~i 179 (337)
+++++||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++... . .++.. +. .++. ...+.+|+|
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~~~~~~~g~D~v 266 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGA-T--DFVNPNDHSEPISQVLSKMTNGGVDFS 266 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC-C--EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCC-c--eEEeccccchhHHHHHHHHhCCCCCEE
Confidence 4789999999875 88888888876 55 89999999999999886432 1 11211 10 1110 112369998
Q ss_pred EecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
+-.... ...++.+.+.|+|| |++++...
T Consensus 267 id~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 267 LECVGN------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp EECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred EECCCC------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 853321 35678899999999 99988754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.13 Score=46.79 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=61.6
Q ss_pred CEEEEEcCcc-cHHH-HHHH-hhCCCCe-EEEEeCCHH---HHHHHHhhCCCCCeEEEEcCCCCCCCC-----CCCccEE
Q 019684 112 MLVVDVGGGT-GFTT-LGIV-KHVDAKN-VTILDQSPH---QLAKAKQKEPLKECKIVEGDAEDLPFP-----TDYADRY 179 (337)
Q Consensus 112 ~~VLDiGcG~-G~~~-~~l~-~~~~~~~-v~gvD~s~~---~~~~a~~~~~~~~~~~~~~d~~~~~~~-----~~~fD~i 179 (337)
++||-+|+|. |..+ ..++ +.. +.+ |+++|.+++ .++.+++.. .+.+ |..+..+. .+.+|+|
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lG----a~~v--~~~~~~~~~i~~~~gg~Dvv 246 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELD----ATYV--DSRQTPVEDVPDVYEQMDFI 246 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTT----CEEE--ETTTSCGGGHHHHSCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcC----Cccc--CCCccCHHHHHHhCCCCCEE
Confidence 8999999864 7788 8888 765 565 999999988 888887642 2333 33221111 1368998
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+-... . ...++++.+.|+|+|+++....
T Consensus 247 id~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 247 YEATG-----F-PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-----C-hHHHHHHHHHHhcCCEEEEEeC
Confidence 84322 1 3467889999999999988754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.027 Score=51.77 Aligned_cols=95 Identities=15% Similarity=0.239 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CC-CCCC-----CCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEG-DA-EDLP-----FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~-~~~~-----~~~~~fD~i 179 (337)
.++++||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++... . ..+.. +. .++. ...+.+|+|
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~v~~~~~~g~Dvv 269 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGA-T--DCLNPRELDKPVQDVITELTAGGVDYS 269 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC-S--EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCC-c--EEEccccccchHHHHHHHHhCCCccEE
Confidence 4789999999874 88888888876 55 89999999999999876532 1 11211 10 1110 112369998
Q ss_pred EecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
+-... -...++.+.+.|++| |++++...
T Consensus 270 id~~G------~~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 270 LDCAG------TAQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp EESSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EECCC------CHHHHHHHHHHhhcCCCEEEEECC
Confidence 84322 135678899999999 99988754
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.072 Score=47.55 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=63.1
Q ss_pred cccCCCCCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 103 EPADLSNRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
+...+ +++++||-+|+| .|..+..+++.. +++|++++ +++.++.+++... +.+..|.+++ .+.+|+|+-
T Consensus 136 ~~~~~-~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~lGa----~~v~~d~~~v---~~g~Dvv~d 205 (315)
T 3goh_A 136 EKIPL-TKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKRGV----RHLYREPSQV---TQKYFAIFD 205 (315)
T ss_dssp TTSCC-CSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHHTE----EEEESSGGGC---CSCEEEEEC
T ss_pred hhcCC-CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHcCC----CEEEcCHHHh---CCCccEEEE
Confidence 33444 488999999996 488888888875 67999999 9998898887532 2222242222 456999985
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
...-. .+.++.+.|+|+|+++...
T Consensus 206 ~~g~~-------~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 206 AVNSQ-------NAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp C--------------TTGGGEEEEEEEEEEC
T ss_pred CCCch-------hHHHHHHHhcCCCEEEEEe
Confidence 32211 2356789999999998874
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.071 Score=47.93 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=49.2
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCH---HHHHHHHhhCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP---HQLAKAKQKEP 155 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~---~~~~~a~~~~~ 155 (337)
.....+.+.++.... .+++.|||.-||+|..+...... +.+.+|+|+++ ...+.+++++.
T Consensus 226 ~kp~~l~~~~i~~~~--~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 226 QKPAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp CCCHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHhC--CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHH
Confidence 445666666665543 47899999999999999998888 78999999999 99999998865
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.1 Score=45.23 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=70.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhh-------CCCCeEEEEe-----CCH----------------------HHHHHH---Hh
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKH-------VDAKNVTILD-----QSP----------------------HQLAKA---KQ 152 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~-------~~~~~v~gvD-----~s~----------------------~~~~~a---~~ 152 (337)
-...|+|+||-.|..+..++.. .+..+|+++| +.+ +.++.. .+
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3568999999999988876542 2457899999 321 112211 11
Q ss_pred h---CC--CCCeEEEEcCCCC-CC-----CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 153 K---EP--LKECKIVEGDAED-LP-----FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 153 ~---~~--~~~~~~~~~d~~~-~~-----~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+ .. ..+++++.+++.+ +| .+..+||+|+.-.-. .......++.+...|+|||.+++-+...
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~~ 220 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELDN 220 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTTC
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 1 22 2679999999944 33 234579999986532 2233467899999999999999877643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.15 Score=45.92 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=64.2
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC---CC-----CCCCCccE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED---LP-----FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~---~~-----~~~~~fD~ 178 (337)
+++++||-.|+ |.|..+..+++.. +++|+++|.+++.++.+++..... ..+ |..+ +. ...+.+|+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~--~~~--d~~~~~~~~~~~~~~~~~~~d~ 228 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFD--DAF--NYKEESDLTAALKRCFPNGIDI 228 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCS--EEE--ETTSCSCSHHHHHHHCTTCEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCc--eEE--ecCCHHHHHHHHHHHhCCCCcE
Confidence 47899999997 5788888888775 679999999999998887433211 111 2221 10 11245999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
|+..... ..++.+.+.|++||++++..
T Consensus 229 vi~~~g~-------~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 229 YFENVGG-------KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred EEECCCH-------HHHHHHHHHHhcCCEEEEEc
Confidence 8865321 37888999999999998864
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.073 Score=48.08 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~~ 181 (337)
.++++||=.|+|. |.++..+++..+...++++|.+++-++.+++.... ..+..+-.+.+ .....+|+|+-
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~---~~i~~~~~~~~~~~~~~~~~~g~d~v~d 235 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM---QTFNSSEMSAPQMQSVLRELRFNQLILE 235 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHHGGGCSSEEEEE
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe---EEEeCCCCCHHHHHHhhcccCCcccccc
Confidence 4789999999975 66777788876556788999999999999876431 12211111110 11244787764
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
... -...++...+.|++||.+++.....
T Consensus 236 ~~G------~~~~~~~~~~~l~~~G~~v~~g~~~ 263 (346)
T 4a2c_A 236 TAG------VPQTVELAVEIAGPHAQLALVGTLH 263 (346)
T ss_dssp CSC------SHHHHHHHHHHCCTTCEEEECCCCS
T ss_pred ccc------ccchhhhhhheecCCeEEEEEeccC
Confidence 321 2357788999999999999876543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.041 Score=50.44 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEE-cCC-CCC-----CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVE-GDA-EDL-----PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~d~-~~~-----~~~~~~fD~i 179 (337)
+++++||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++... . .++. .+. .++ ...++.+|+|
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~v~~~~~~g~D~v 264 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGA-T--ECINPQDFSKPIQEVLIEMTDGGVDYS 264 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTC-S--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC-c--eEeccccccccHHHHHHHHhCCCCCEE
Confidence 4789999999875 78888888875 55 89999999999999886543 1 1121 110 111 0112369998
Q ss_pred EecccccccCCHHHHHHHHHHhccCC-CEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 213 (337)
+-.... ...++.+.+.|+|+ |++++...
T Consensus 265 id~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 265 FECIGN------VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp EECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred EECCCc------HHHHHHHHHhhccCCcEEEEEec
Confidence 854321 35678899999999 99988753
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.12 Score=46.70 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCc--ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCC-CCccE
Q 019684 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPT-DYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~-~~fD~ 178 (337)
.++++||-.|+| .|..+..+++...+.+|+++|.+++.++.+++... . .++ |..+.. ... +.+|+
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~--~-~~~--~~~~~~~~~~~~~~~~~~~~d~ 243 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA--D-YVI--NASMQDPLAEIRRITESKGVDA 243 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC--S-EEE--ETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC--C-EEe--cCCCccHHHHHHHHhcCCCceE
Confidence 478999999997 56677777776436799999999999988876532 1 112 221111 111 46999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
++....- ...++.+.+.|+|+|++++...
T Consensus 244 vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 244 VIDLNNS------EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp EEESCCC------HHHHTTGGGGEEEEEEEEECCS
T ss_pred EEECCCC------HHHHHHHHHHHhcCCEEEEECC
Confidence 8854331 3467788999999999988654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.025 Score=51.04 Aligned_cols=93 Identities=10% Similarity=0.029 Sum_probs=64.4
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCCCccEE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~i 179 (337)
+++++||-.|+ |.|..+..+++.. +++|+++|.+++.++.+.+..... ..+ |..+.. ...+.+|+|
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~--~~~--~~~~~~~~~~~~~~~~~~~d~v 222 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFD--GAI--DYKNEDLAAGLKRECPKGIDVF 222 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCS--EEE--ETTTSCHHHHHHHHCTTCEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCC--EEE--ECCCHHHHHHHHHhcCCCceEE
Confidence 47899999998 5688888888775 679999999999998883332211 112 221111 112469998
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+....- ..+..+.+.|++||++++...
T Consensus 223 i~~~g~-------~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 223 FDNVGG-------EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp EESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred EECCCc-------chHHHHHHHHhhCCEEEEEee
Confidence 864331 378889999999999988643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.03 Score=51.14 Aligned_cols=96 Identities=20% Similarity=0.158 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC-CC--CCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-DL--PFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~--~~~~~~fD~i~~~~~ 184 (337)
+++++||-+|+|. |..+..+++.. +++|+++|.+++.++.+++... . .++..+-. +. ... +.+|+|+-...
T Consensus 178 ~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~v~~~~~~~~~~~~~~-~~~D~vid~~g 252 (360)
T 1piw_A 178 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGA-D--HYIATLEEGDWGEKYF-DTFDLIVVCAS 252 (360)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTC-S--EEEEGGGTSCHHHHSC-SCEEEEEECCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCC-C--EEEcCcCchHHHHHhh-cCCCEEEECCC
Confidence 4789999999864 77888888765 6789999999998888887532 1 12211111 10 011 46999986543
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... ...++.+.+.|++||+++....
T Consensus 253 ~~~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 253 SLT----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CST----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCc----HHHHHHHHHHhcCCCEEEEecC
Confidence 300 1234557889999999988654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.027 Score=51.96 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC---CCC----CC--CCCCCccE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD---AED----LP--FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d---~~~----~~--~~~~~fD~ 178 (337)
+++++||-+|+| .|..+..+++..+..+|+++|.+++.++.+++... . .++..+ -.+ +. .....+|+
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~v~~~~~g~g~Dv 270 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA-D--LTLNRRETSVEERRKAIMDITHGRGADF 270 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC-c--EEEeccccCcchHHHHHHHHhCCCCCcE
Confidence 478999999977 48888888887632699999999999999986432 1 122211 001 00 11235999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+-.... ...++.+.+.|+|+|++++....
T Consensus 271 vid~~g~------~~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 271 ILEATGD------SRALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp EEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred EEECCCC------HHHHHHHHHHHhcCCEEEEEecC
Confidence 9854321 13678889999999999887543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.081 Score=47.36 Aligned_cols=92 Identities=14% Similarity=0.206 Sum_probs=63.6
Q ss_pred EEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-CCCCCCccEEEecccccccC
Q 019684 113 LVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 113 ~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~i~~~~~l~~~~ 189 (337)
+||=.|+ |.|..+..+++.. +++|+++|.+++..+.+++..... .+-..+.... ....+.+|+|+-.. .
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~~~~d~v~d~~-----g 220 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSLGANR--ILSRDEFAESRPLEKQLWAGAIDTV-----G 220 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTCSE--EEEGGGSSCCCSSCCCCEEEEEESS-----C
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCE--EEecCCHHHHHhhcCCCccEEEECC-----C
Confidence 4999996 5789999999886 679999999999999998764311 1111121111 12335699877532 2
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
. ..++++.+.|+|+|+++.....
T Consensus 221 ~--~~~~~~~~~l~~~G~iv~~G~~ 243 (324)
T 3nx4_A 221 D--KVLAKVLAQMNYGGCVAACGLA 243 (324)
T ss_dssp H--HHHHHHHHTEEEEEEEEECCCT
T ss_pred c--HHHHHHHHHHhcCCEEEEEecC
Confidence 2 3788999999999999987543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.029 Score=50.79 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=64.7
Q ss_pred cccCCCCCCCEEEEEcCc--ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCC
Q 019684 103 EPADLSNRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTD 174 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~ 174 (337)
+...+ +++++||-+|+| .|..+..+++.. +++|+++|.+++.++.+++.... ..+..+-.++. ....
T Consensus 138 ~~~~~-~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga~---~~~~~~~~~~~~~~~~~~~~~ 212 (340)
T 3gms_A 138 ETLNL-QRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGAA---YVIDTSTAPLYETVMELTNGI 212 (340)
T ss_dssp TTSCC-CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCS---EEEETTTSCHHHHHHHHTTTS
T ss_pred Hhccc-CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCCc---EEEeCCcccHHHHHHHHhCCC
Confidence 33444 478999999986 678888887765 67999999999988888875331 11211111110 1223
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+|+|+-...- . ...+..+.|+|||++++...
T Consensus 213 g~Dvvid~~g~------~-~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 213 GADAAIDSIGG------P-DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp CEEEEEESSCH------H-HHHHHHHTEEEEEEEEECCC
T ss_pred CCcEEEECCCC------h-hHHHHHHHhcCCCEEEEEee
Confidence 69999864332 1 22345589999999998754
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.22 Score=44.69 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=65.2
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~ 180 (337)
+++++||-+|+ |.|..+..+++.. +++|+++|.+++.++.+++... . ..+..+-.+.. .....+|+|+
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga--~-~~~~~~~~~~~~~~~~~~~~~g~D~vi 222 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGA--E-YLINASKEDILRQVLKFTNGKGVDASF 222 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC--S-EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC--c-EEEeCCCchHHHHHHHHhCCCCceEEE
Confidence 47899999994 5688888888875 6799999999999998887532 1 12221111110 1134699998
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-...- ..++.+.+.|+|||++++...
T Consensus 223 d~~g~-------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 223 DSVGK-------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp ECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred ECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence 65432 357788899999999998753
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=93.40 E-value=0.18 Score=45.39 Aligned_cols=126 Identities=13% Similarity=-0.026 Sum_probs=75.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC-CCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF-PTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~-~~~~fD~i~~~~~l~~ 187 (337)
.+.+|+|+.||.|.+...+... +.+ +.++|+++.+++..+.+..... .+|+.++.. .-..+|+|+...-...
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~----~~Di~~~~~~~~~~~D~l~~gpPCQ~ 83 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP----EGDITQVNEKTIPDHDILCAGFPCQA 83 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC----BSCGGGSCGGGSCCCSEEEEECCCTT
T ss_pred CCCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC----cCCHHHcCHhhCCCCCEEEECCCCCC
Confidence 3578999999999999998877 555 6679999999999998864322 578765431 1135899998422211
Q ss_pred ---------cCCHH-HH---HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 188 ---------WPDPQ-RG---IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 188 ---------~~~~~-~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..|.. .+ +-++.+.++|. .+ +.+....-..... -...+.+.+.|++.|+.+...
T Consensus 84 fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~-~~-~~ENV~gl~~~~~--------~~~~~~i~~~l~~~GY~v~~~ 150 (327)
T 2c7p_A 84 FSISGKQKGFEDSRGTLFFDIARIVREKKPK-VV-FMENVKNFASHDN--------GNTLEVVKNTMNELDYSFHAK 150 (327)
T ss_dssp TCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EE-EEEEEGGGGTGGG--------GHHHHHHHHHHHHTTBCCEEE
T ss_pred cchhcccCCCcchhhHHHHHHHHHHHhccCc-EE-EEeCcHHHHhccc--------cHHHHHHHHHHHhCCCEEEEE
Confidence 12222 12 33344556784 33 3332211110000 012467888899999975433
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.31 Score=44.02 Aligned_cols=92 Identities=13% Similarity=0.251 Sum_probs=64.6
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccEE
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~i 179 (337)
++++||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++... . ..+ |..+.. .....+|+|
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga-~--~~~--~~~~~~~~~~v~~~~~g~g~D~v 240 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGA-D--YVI--NPFEEDVVKEVMDITDGNGVDVF 240 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTC-S--EEE--CTTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-C--EEE--CCCCcCHHHHHHHHcCCCCCCEE
Confidence 788999999964 77888888875 56 89999999999998886532 1 112 221111 112359999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+..... ...++.+.+.|+++|+++....
T Consensus 241 id~~g~------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 241 LEFSGA------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp EECSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred EECCCC------HHHHHHHHHHHhcCCEEEEEcc
Confidence 864331 3567889999999999988754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.18 Score=45.58 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=64.6
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~ 180 (337)
+++++||-.|+ |.|..+..+++.. +++|++++.+++.++.+++... . .++..+ .++. .....+|+|+
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~v~~~~-~~~~~~v~~~~~~~g~Dvvi 232 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGA-D--IVLPLE-EGWAKAVREATGGAGVDMVV 232 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTC-S--EEEESS-TTHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC-c--EEecCc-hhHHHHHHHHhCCCCceEEE
Confidence 47899999997 5688888888875 6799999999999888887532 1 122222 2211 1223699998
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
-...- ..+..+.+.|++||++++..
T Consensus 233 d~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 233 DPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp ESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred ECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 65432 25778889999999998864
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.036 Score=50.34 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=65.0
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC---CCC-----CCCCCccE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE---DLP-----FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~---~~~-----~~~~~fD~ 178 (337)
.++++||-+|+ |.|..+..++... +.+|+++|.+++.++.+++... . ..+ |.. ++. ..++.+|+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g~--~-~~~--d~~~~~~~~~~~~~~~~~~~D~ 241 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIGG--E-VFI--DFTKEKDIVGAVLKATDGGAHG 241 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTTC--C-EEE--ETTTCSCHHHHHHHHHTSCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcCC--c-eEE--ecCccHhHHHHHHHHhCCCCCE
Confidence 47899999998 5778877777764 6799999999888888876422 1 111 332 110 01125899
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+..... ...++.+.+.|+++|++++....
T Consensus 242 vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~~ 271 (347)
T 2hcy_A 242 VINVSVS------EAAIEASTRYVRANGTTVLVGMP 271 (347)
T ss_dssp EEECSSC------HHHHHHHTTSEEEEEEEEECCCC
T ss_pred EEECCCc------HHHHHHHHHHHhcCCEEEEEeCC
Confidence 8865431 35788899999999999887543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.24 Score=44.66 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=65.2
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~ 178 (337)
+++++||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~ga-~--~~~--d~~~~~~~~~~~~~~~~~~~d~ 238 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKALGA-D--ETV--NYTHPDWPKEVRRLTGGKGADK 238 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC-S--EEE--ETTSTTHHHHHHHHTTTTCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCC-C--EEE--cCCcccHHHHHHHHhCCCCceE
Confidence 47899999998 5788888888875 6799999999999988876432 1 112 322211 11236999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+.... . ..++.+.+.|+++|++++...
T Consensus 239 vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 239 VVDHTG-A------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp EEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred EEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence 986554 1 256778899999999988653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.055 Score=49.48 Aligned_cols=94 Identities=18% Similarity=0.087 Sum_probs=65.2
Q ss_pred CCCCEEEEEc--CcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CCCCCccEEEe
Q 019684 109 NRNMLVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~i~~ 181 (337)
+++++||-+| +|.|..+..+++.. +++|+++|.+++.++.+++... . ..+..+-.++. ...+.+|+|+-
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga-~--~~~~~~~~~~~~~~~~~~~~g~D~vid 237 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGC-D--RPINYKTEPVGTVLKQEYPEGVDVVYE 237 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCC-c--EEEecCChhHHHHHHHhcCCCCCEEEE
Confidence 4789999999 45788888888875 6799999999999888886432 1 12211111110 11245999986
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
... . ..++.+.+.|+++|++++...
T Consensus 238 ~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 238 SVG-----G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp CSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred CCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence 533 1 478889999999999988653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.042 Score=49.40 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=65.1
Q ss_pred CCCCEEEEEc-C-cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 019684 109 NRNMLVVDVG-G-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiG-c-G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~ 180 (337)
+++++||-.| + |.|..+..+++.. +++|+++|.+++.++.+++... . ..+..+-.++. .....+|+|+
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga--~-~~~~~~~~~~~~~~~~~~~~~g~Dvvi 214 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALGA--W-ETIDYSHEDVAKRVLELTDGKKCPVVY 214 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTC--S-EEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC--C-EEEeCCCccHHHHHHHHhCCCCceEEE
Confidence 4789999998 3 5688888888775 6799999999999999887542 1 12211111110 1224699998
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-...- ..+..+.+.|++||++++...
T Consensus 215 d~~g~-------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 215 DGVGQ-------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp ESSCG-------GGHHHHHTTEEEEEEEEECCC
T ss_pred ECCCh-------HHHHHHHHHhcCCCEEEEEec
Confidence 64432 357788999999999998754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.11 E-value=2.1 Score=32.88 Aligned_cols=90 Identities=13% Similarity=0.124 Sum_probs=58.9
Q ss_pred CCEEEEEcCcc-cHHH-HHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEeccc
Q 019684 111 NMLVVDVGGGT-GFTT-LGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGS 184 (337)
Q Consensus 111 ~~~VLDiGcG~-G~~~-~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~ 184 (337)
..+|+=+|||. |... ..|.+. +.+|+++|.+++.++.+++ .++.++.+|..+.. ..-..+|+|++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~----~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-- 78 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE----RGVRAVLGNAANEEIMQLAHLECAKWLILT-- 78 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH----TTCEEEESCTTSHHHHHHTTGGGCSEEEEC--
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH----cCCCEEECCCCCHHHHHhcCcccCCEEEEE--
Confidence 36799999975 4333 333333 7899999999999988875 36678889986532 112458888753
Q ss_pred ccccCCHH--HHHHHHHHhccCCCEEEEE
Q 019684 185 IEYWPDPQ--RGIREAYRVLKLGGKACII 211 (337)
Q Consensus 185 l~~~~~~~--~~l~~~~~~LkpgG~l~i~ 211 (337)
.++.. ..+-...+.+.|+..++..
T Consensus 79 ---~~~~~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 79 ---IPNGYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp ---CSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ---CCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 33332 2344456777888877654
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.25 Score=44.76 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=64.1
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~ 178 (337)
+++++||-.|+ |.|..+..+++.. +++|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga--~-~~~--d~~~~~~~~~~~~~~~~~~~D~ 242 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGA--H-EVF--NHREVNYIDKIKKYVGEKGIDI 242 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC--S-EEE--ETTSTTHHHHHHHHHCTTCEEE
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcCC--C-EEE--eCCCchHHHHHHHHcCCCCcEE
Confidence 47899999997 5677777777775 6799999999998888775432 1 111 222211 11236999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+....- ..+....+.|+|+|++++...
T Consensus 243 vi~~~G~-------~~~~~~~~~l~~~G~iv~~g~ 270 (351)
T 1yb5_A 243 IIEMLAN-------VNLSKDLSLLSHGGRVIVVGS 270 (351)
T ss_dssp EEESCHH-------HHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCh-------HHHHHHHHhccCCCEEEEEec
Confidence 9865431 357788999999999988753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.073 Score=48.24 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=63.7
Q ss_pred CCCEEEEE-cCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-C-----CCCCCCccEEEe
Q 019684 110 RNMLVVDV-GGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-L-----PFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDi-GcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~-----~~~~~~fD~i~~ 181 (337)
++++||-+ |+| .|..+..+++.. +++|+++|.+++.++.+++.... ..+ |..+ + ....+.+|+|+-
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~---~vi--~~~~~~~~~~~~~~~~g~Dvv~d 223 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGAD---IVL--NHKESLLNQFKTQGIELVDYVFC 223 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTCS---EEE--CTTSCHHHHHHHHTCCCEEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCc---EEE--ECCccHHHHHHHhCCCCccEEEE
Confidence 68999999 454 588888888875 67999999999999999875421 111 1111 1 012346999885
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.. .-...+..+.+.|+++|+++...
T Consensus 224 ~~------g~~~~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 224 TF------NTDMYYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp SS------CHHHHHHHHHHHEEEEEEEEESS
T ss_pred CC------CchHHHHHHHHHhccCCEEEEEC
Confidence 32 23457788999999999997653
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=92.42 E-value=0.039 Score=49.03 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=62.0
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC-CCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA-EDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~i~~~~~l 185 (337)
+++++||-+|+ |.|..+..+++.. +++|+++|.+++.++.+++... . ..+..+- .++.-.-+.+|+|+. ..-
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~~~~~~~~~~~~~~~~~~d~vid-~g~ 198 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGA-E--EAATYAEVPERAKAWGGLDLVLE-VRG 198 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTC-S--EEEEGGGHHHHHHHTTSEEEEEE-CSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCC-C--EEEECCcchhHHHHhcCceEEEE-CCH
Confidence 47899999997 5688888888875 6799999999988888876422 1 1121110 010000045999986 321
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..++.+.+.|+++|+++...
T Consensus 199 -------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 199 -------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp -------TTHHHHHTTEEEEEEEEEC-
T ss_pred -------HHHHHHHHhhccCCEEEEEe
Confidence 25778899999999998764
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.33 Score=43.38 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=63.5
Q ss_pred CCCCEEEEEc--CcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccE
Q 019684 109 NRNMLVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~ 178 (337)
+++++||-.| +|.|..+..++... +.+|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~g~--~-~~~--~~~~~~~~~~~~~~~~~~~~D~ 212 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGA--W-QVI--NYREEDLVERLKEITGGKKVRV 212 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTC--S-EEE--ETTTSCHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC--C-EEE--ECCCccHHHHHHHHhCCCCceE
Confidence 4789999999 35677777777664 6799999999998888876432 1 111 221111 11235999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
++.... ...++.+.+.|++||++++...
T Consensus 213 vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 213 VYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp EEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred EEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 986543 2457888999999999988753
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.64 Score=42.08 Aligned_cols=92 Identities=12% Similarity=0.071 Sum_probs=63.3
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~ 178 (337)
.++++||-.|+ |.|..+..++... +++|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g~--~-~~~--~~~~~~~~~~~~~~~~~~~~d~ 234 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKLGA--A-AGF--NYKKEDFSEATLKFTKGAGVNL 234 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTC--S-EEE--ETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC--c-EEE--ecCChHHHHHHHHHhcCCCceE
Confidence 47899999983 5677777777774 6799999999999888865532 1 111 221111 11235999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
++....- ..+....+.|++||++++...
T Consensus 235 vi~~~G~-------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 235 ILDCIGG-------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEESSCG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCc-------hHHHHHHHhccCCCEEEEEec
Confidence 9865432 146778899999999988754
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.14 Score=45.84 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=61.7
Q ss_pred CCC-EEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-CCCCCCccEEEecccc
Q 019684 110 RNM-LVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~-~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~i~~~~~l 185 (337)
++. +||-+|+ |.|..+..+++.. +++|++++.+++.++.+++.....-+.....+.... ....+.+|+|+-...
T Consensus 148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g- 225 (328)
T 1xa0_A 148 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG- 225 (328)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST-
T ss_pred CCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCc-
Confidence 554 8999997 5788888888875 679999999988888887643211011111100000 122346999885432
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ..+....+.|++||++++...
T Consensus 226 ----~--~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 226 ----G--RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp ----T--TTHHHHHHTEEEEEEEEECSC
T ss_pred ----H--HHHHHHHHhhccCCEEEEEee
Confidence 1 247788899999999988753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.085 Score=47.98 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=64.7
Q ss_pred CCCCEEEEEc--CcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CCCCCccEEEe
Q 019684 109 NRNMLVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~i~~ 181 (337)
+++++||-+| +|.|..+..+++.. +++|+++|.+++.++.+++.... ..+..+-.+.. ...+.+|+|+.
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~---~~~~~~~~~~~~~~~~~~~~g~Dvvid 241 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERLGAK---RGINYRSEDFAAVIKAETGQGVDIILD 241 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHHSSCEEEEEE
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCC---EEEeCCchHHHHHHHHHhCCCceEEEE
Confidence 4789999995 34688888888875 67999999999999998875421 11211111110 11346999986
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...- ..+....+.|+++|++++...
T Consensus 242 ~~g~-------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 242 MIGA-------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp SCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred CCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence 5432 256778899999999988754
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.36 Score=42.75 Aligned_cols=69 Identities=9% Similarity=0.033 Sum_probs=53.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCe---EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC----CCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKN---VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP----TDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~----~~~fD~i~~~ 182 (337)
...+|+|+-||.|.+...+... +.+ |.++|+++...+..+.+.. +..+..+|+.++... .+.+|+++..
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a--G~~~~~v~a~E~d~~a~~ty~~N~~--~~~~~~~DI~~i~~~~i~~~~~~Dll~gg 90 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL--GIQVDRYIASEVCEDSITVGMVRHQ--GKIMYVGDVRSVTQKHIQEWGPFDLVIGG 90 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT--TBCEEEEEEECCCHHHHHHHHHHTT--TCEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred CCCEEEEeCcCccHHHHHHHHC--CCccceEEEEECCHHHHHHHHHhCC--CCceeCCChHHccHHHhcccCCcCEEEec
Confidence 5678999999999999988877 555 4899999999988887753 446788898776421 1359999983
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=91.75 E-value=0.7 Score=41.76 Aligned_cols=92 Identities=9% Similarity=-0.043 Sum_probs=63.4
Q ss_pred CCC--CEEEEEcC--cccHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCCCc
Q 019684 109 NRN--MLVVDVGG--GTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYA 176 (337)
Q Consensus 109 ~~~--~~VLDiGc--G~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~f 176 (337)
+++ ++||-.|+ |.|..+..++... +. +|+++|.+++.++.+++..... .. .|..+.. ...+.+
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g~~--~~--~d~~~~~~~~~~~~~~~~~~ 231 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELGFD--AA--INYKKDNVAEQLRESCPAGV 231 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCCS--EE--EETTTSCHHHHHHHHCTTCE
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCc--eE--EecCchHHHHHHHHhcCCCC
Confidence 377 99999997 5677777777764 66 9999999998888887633211 11 1322111 111258
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
|+++.... ...++.+.+.|++||++++..
T Consensus 232 d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 232 DVYFDNVG-------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp EEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred CEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence 99886543 257888999999999998864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.18 Score=46.01 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=61.5
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++++||-+|+|. |..+..+++.. +.+|+++|.+++.++.+.+..... .++.. +...+.-..+.+|+|+-......
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa~--~v~~~~~~~~~~~~~~~~D~vid~~g~~~ 263 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGAD--SFLVSRDQEQMQAAAGTLDGIIDTVSAVH 263 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCCS--EEEETTCHHHHHHTTTCEEEEEECCSSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCc--eEEeccCHHHHHHhhCCCCEEEECCCcHH
Confidence 789999999864 77777778775 679999999998888877443322 11211 10001000135999986543221
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.++...+.|+++|+++....
T Consensus 264 ------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 264 ------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ------CSHHHHHHEEEEEEEEECCC
T ss_pred ------HHHHHHHHHhcCCEEEEEcc
Confidence 24567789999999988754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.39 Score=43.69 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=61.3
Q ss_pred CCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCH---HHHHHHHhhCCCCCeEEEEcCCCCCCCC------CCCccEEE
Q 019684 111 NMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSP---HQLAKAKQKEPLKECKIVEGDAEDLPFP------TDYADRYV 180 (337)
Q Consensus 111 ~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~---~~~~~a~~~~~~~~~~~~~~d~~~~~~~------~~~fD~i~ 180 (337)
+++||-+|+|. |..+..+++.. +++|+++|.++ +.++.+++.. .+.+ | .+ .+. .+.+|+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~g----a~~v--~-~~-~~~~~~~~~~~~~d~vi 251 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEETK----TNYY--N-SS-NGYDKLKDSVGKFDVII 251 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHHT----CEEE--E-CT-TCSHHHHHHHCCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHhC----Ccee--c-hH-HHHHHHHHhCCCCCEEE
Confidence 89999999853 66667777664 67999999998 7778777643 2233 3 22 211 14599998
Q ss_pred ecccccccCCHHHHH-HHHHHhccCCCEEEEEcCC
Q 019684 181 SAGSIEYWPDPQRGI-REAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l-~~~~~~LkpgG~l~i~~~~ 214 (337)
...... ..+ +.+.+.|+++|++++....
T Consensus 252 d~~g~~------~~~~~~~~~~l~~~G~iv~~g~~ 280 (366)
T 2cdc_A 252 DATGAD------VNILGNVIPLLGRNGVLGLFGFS 280 (366)
T ss_dssp ECCCCC------THHHHHHGGGEEEEEEEEECSCC
T ss_pred ECCCCh------HHHHHHHHHHHhcCCEEEEEecC
Confidence 654321 245 7889999999999887543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=1.3 Score=44.02 Aligned_cols=145 Identities=15% Similarity=0.182 Sum_probs=91.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC--------CCeEEEEeCCHHHHHHHHhhCC--------------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEP-------------------------- 155 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~~-------------------------- 155 (337)
+...|+-+|||.=.....+....+ +.+++=+|. |+.++.=++.+.
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 456899999999888877766533 567778888 444433222111
Q ss_pred -CCCeEEEEcCCCCCC----------C-CCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCC---ch
Q 019684 156 -LKECKIVEGDAEDLP----------F-PTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYP---TF 218 (337)
Q Consensus 156 -~~~~~~~~~d~~~~~----------~-~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~---~~ 218 (337)
..+..++..|+.+.. + ....-=++++-.++.+++.. .++++.+.+ + |+|.+++.+...+ ..
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCC
Confidence 025778889997631 1 22334467778888888654 468888875 4 6777777654433 11
Q ss_pred hHhh-hhhhh---------hccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 219 WLSR-YFADV---------WMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 219 ~~~~-~~~~~---------~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
...+ +.... ...+.+.++..+.|.++||+.+...++...
T Consensus 264 ~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~~~~ 312 (695)
T 2zwa_A 264 PFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQL 312 (695)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEHHHH
T ss_pred hHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeHHHH
Confidence 1111 11111 123568999999999999998888777543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.55 Score=42.00 Aligned_cols=92 Identities=11% Similarity=0.085 Sum_probs=63.8
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~ 178 (337)
+++++||-.|+ |.|..+..++... +.+|+++|.+++.++.+++... . ..+ |..+.. .....+|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~g~--~-~~~--d~~~~~~~~~i~~~~~~~~~d~ 217 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKLGC--H-HTI--NYSTQDFAEVVREITGGKGVDV 217 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC--S-EEE--ETTTSCHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC--C-EEE--ECCCHHHHHHHHHHhCCCCCeE
Confidence 47899999995 6788887777775 6799999999988888876432 1 111 222111 11235999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
++....- ..++.+.+.|++||+++....
T Consensus 218 vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 218 VYDSIGK-------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp EEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred EEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence 9865432 357788999999999988753
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.19 Score=45.33 Aligned_cols=91 Identities=20% Similarity=0.301 Sum_probs=62.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCC-eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC-------CCCCccEEE
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF-------PTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~-------~~~~fD~i~ 180 (337)
++++||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++. . . ..+ |..+..+ ....+|+|+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a-~--~v~--~~~~~~~~~~~~~~~~~g~D~vi 236 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-A-D--RLV--NPLEEDLLEVVRRVTGSGVEVLL 236 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-C-S--EEE--CTTTSCHHHHHHHHHSSCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-H-H--hcc--CcCccCHHHHHHHhcCCCCCEEE
Confidence 688999999864 77888888875 56 899999999888877653 2 1 111 2221110 123599998
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-... ....++...+.|+++|++++...
T Consensus 237 d~~g------~~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 237 EFSG------NEAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp ECSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred ECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 5432 13567889999999999988754
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=91.36 E-value=0.7 Score=42.48 Aligned_cols=77 Identities=13% Similarity=0.228 Sum_probs=53.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-------CCCeEEEEeCCHHHHHHHHhhCCCC-CeEEEEcCCCCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKEPLK-ECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-------~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
..-.|+|+|.|+|.++..+.+.. ...+++.||+|+...+.=++++... ++.+. .++.++| ++ .-+|++
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~-~~l~~lp--~~-~~~viA 155 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH-DSFEDVP--EG-PAVILA 155 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE-SSGGGSC--CS-SEEEEE
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEe-CChhhcC--CC-CeEEEe
Confidence 34579999999999998886542 2358999999998887666665432 45544 3344554 22 457888
Q ss_pred cccccccCC
Q 019684 182 AGSIEYWPD 190 (337)
Q Consensus 182 ~~~l~~~~~ 190 (337)
+.++..+|-
T Consensus 156 NE~fDAlPv 164 (387)
T 1zkd_A 156 NEYFDVLPI 164 (387)
T ss_dssp ESSGGGSCC
T ss_pred ccccccCce
Confidence 888877763
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.3 Score=44.13 Aligned_cols=124 Identities=13% Similarity=0.118 Sum_probs=78.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCC---CeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---CCCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~~l 185 (337)
.+++|+-||.|.+...+.+. + -.+.++|+++.+.+.-+.|.. +..++.+|+.++. ++...+|+++...--
T Consensus 4 ~~~idLFaG~GG~~~G~~~a--G~~~~~v~a~e~d~~a~~ty~~N~~--~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPC 79 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES--GLDGEIVAAVDINTVANSVYKHNFP--ETNLLNRNIQQLTPQVIKKWNVDTILMSPPC 79 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH--TCSEEEEEEECCCHHHHHHHHHHCT--TSCEECCCGGGCCHHHHHHTTCCEEEECCCC
T ss_pred CEEEEECcCccHHHHHHHHc--CCCceEEEEEeCCHHHHHHHHHhCC--CCceeccccccCCHHHhccCCCCEEEecCCC
Confidence 47999999999999998877 4 346789999999999998875 3346778887654 222358999873221
Q ss_pred cc---------cCCHH-HHHHHHHHhc---c-CCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 186 EY---------WPDPQ-RGIREAYRVL---K-LGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 186 ~~---------~~~~~-~~l~~~~~~L---k-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
.. ..|.. .++.++.+++ + | .+++.+....-.. . ...+.+.+.|++.||.+...
T Consensus 80 Q~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~-~----------~~~~~i~~~l~~~GY~v~~~ 146 (333)
T 4h0n_A 80 QPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFEN-S----------TVRNLFIDKLKECNFIYQEF 146 (333)
T ss_dssp CCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGG-S----------HHHHHHHHHHHHTTEEEEEE
T ss_pred cchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhh-h----------hHHHHHHHHHHhCCCeEEEE
Confidence 11 22322 2444444444 4 5 3444443322110 0 02467888999999986544
Q ss_pred E
Q 019684 252 K 252 (337)
Q Consensus 252 ~ 252 (337)
.
T Consensus 147 v 147 (333)
T 4h0n_A 147 L 147 (333)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=91.17 E-value=0.16 Score=47.84 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=65.4
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----------------
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---------------- 170 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---------------- 170 (337)
+++++||=+|+ |.|..+..+++.. ++++++++.+++-++.+++.... .++...-.+..
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~lGa~---~vi~~~~~d~~~~~~~~~~~~~~~~~~ 302 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAMGAE---AIIDRNAEGYRFWKDENTQDPKEWKRF 302 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCC---EEEETTTTTCCSEEETTEECHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCc---EEEecCcCcccccccccccchHHHHHH
Confidence 47899999997 4688888888875 78999999999999999875431 11211111110
Q ss_pred -------CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 171 -------FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 171 -------~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.....+|+|+-... . ..+....+.|++||++++...
T Consensus 303 ~~~i~~~t~g~g~Dvvid~~G------~-~~~~~~~~~l~~~G~iv~~G~ 345 (456)
T 3krt_A 303 GKRIRELTGGEDIDIVFEHPG------R-ETFGASVFVTRKGGTITTCAS 345 (456)
T ss_dssp HHHHHHHHTSCCEEEEEECSC------H-HHHHHHHHHEEEEEEEEESCC
T ss_pred HHHHHHHhCCCCCcEEEEcCC------c-hhHHHHHHHhhCCcEEEEEec
Confidence 11246998885322 1 478889999999999998753
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.14 Score=45.91 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=62.9
Q ss_pred CCC-EEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-CCCCCCccEEEecccc
Q 019684 110 RNM-LVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~-~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~i~~~~~l 185 (337)
++. +||-+|+ |.|..+..+++.. +++|++++.+++.++.+++.....-+.....|.... ....+.+|+|+-...
T Consensus 149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g- 226 (330)
T 1tt7_A 149 PEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG- 226 (330)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC-
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCc-
Confidence 554 8999997 5688888888775 678999999988888887653211011101111111 122346998875432
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. ..+.+..+.|++||++++...
T Consensus 227 ----~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 227 ----G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp ----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred ----H--HHHHHHHHhhcCCCEEEEEec
Confidence 2 368889999999999988754
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.16 E-value=0.71 Score=43.21 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=65.2
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----------------
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL----------------- 169 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~----------------- 169 (337)
+++++||-.|+ |.|..+..+++.. ++++++++.+++.++.+++.....-+.....|..+.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAK 297 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHH
Confidence 48899999996 4688888888875 789999999999999987653311111111121110
Q ss_pred ---CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 170 ---PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 170 ---~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
......+|+|+-...- ..++...+.|++||++++...
T Consensus 298 ~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 298 LVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESCC
T ss_pred HHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEec
Confidence 0012459998864331 367888899999999998754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=0.2 Score=45.53 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=61.5
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
++++||-+|+| .|..+..+++.. +++|+++|.+++.++.+++...... ++.. +...+....+.+|+|+-...-.
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~g~D~vid~~g~~- 255 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGADD--YVIGSDQAKMSELADSLDYVIDTVPVH- 255 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCSC--EEETTCHHHHHHSTTTEEEEEECCCSC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCce--eeccccHHHHHHhcCCCCEEEECCCCh-
Confidence 78999999987 377777777775 6799999999988888874333222 1111 1000000013599998543321
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..++...+.|+|||+++....
T Consensus 256 -----~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 256 -----HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp -----CCSHHHHTTEEEEEEEEECSC
T ss_pred -----HHHHHHHHHhccCCEEEEeCC
Confidence 134567889999999988753
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=90.86 E-value=0.22 Score=45.57 Aligned_cols=93 Identities=15% Similarity=0.249 Sum_probs=62.6
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~i~~ 181 (337)
.++.+||=+|+ |.|..+..+++.. +++|+++. +++-++.+++... . .++...-.++ ...++.+|+|+-
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~lGa-~--~vi~~~~~~~~~~v~~~t~g~~d~v~d 237 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSRGA-E--EVFDYRAPNLAQTIRTYTKNNLRYALD 237 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHTTC-S--EEEETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHcCC-c--EEEECCCchHHHHHHHHccCCccEEEE
Confidence 47899999998 3789999999885 67999885 8888888876532 1 1222111111 012245999884
Q ss_pred cccccccCCHHHHHHHHHHhc-cCCCEEEEEc
Q 019684 182 AGSIEYWPDPQRGIREAYRVL-KLGGKACIIG 212 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~~ 212 (337)
.-. -...+..+.+.| ++||+++...
T Consensus 238 ~~g------~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 238 CIT------NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp SSC------SHHHHHHHHHHSCTTCEEEEESS
T ss_pred CCC------chHHHHHHHHHhhcCCCEEEEEe
Confidence 322 235677888888 6999998875
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.18 Score=45.52 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=65.9
Q ss_pred cccCCCCCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCC
Q 019684 103 EPADLSNRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTD 174 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~ 174 (337)
+...+ +++++||-+|+ |.|..+..+++.. +++|+++ .+++.++.+++... ..+. +-.+.. ....
T Consensus 144 ~~~~~-~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~lGa----~~i~-~~~~~~~~~~~~~~~~ 215 (343)
T 3gaz_A 144 DRAQV-QDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDLGA----TPID-ASREPEDYAAEHTAGQ 215 (343)
T ss_dssp TTTCC-CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHHTS----EEEE-TTSCHHHHHHHHHTTS
T ss_pred HhcCC-CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHcCC----CEec-cCCCHHHHHHHHhcCC
Confidence 33444 47899999993 4688888888875 6799999 88988888887542 2222 212111 1124
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+|+|+-... . ..+....+.|+++|+++....
T Consensus 216 g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 247 (343)
T 3gaz_A 216 GFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSCLG 247 (343)
T ss_dssp CEEEEEESSC-----T--HHHHHHHHHEEEEEEEEESCC
T ss_pred CceEEEECCC-----c--HHHHHHHHHHhcCCeEEEEcc
Confidence 6999885432 1 478888999999999987643
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.26 Score=44.01 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=60.6
Q ss_pred CCCCEEEEEc-Cc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-CCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVG-GG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~fD~i~~~~~l 185 (337)
+++++||=+| +| .|..+..+++.. +++|++++ ++...+.+++.... ..+..+-.+ +...-..+|+|+-...
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~lGa~---~~i~~~~~~~~~~~~~g~D~v~d~~g- 224 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKALGAE---QCINYHEEDFLLAISTPVDAVIDLVG- 224 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHHTCS---EEEETTTSCHHHHCCSCEEEEEESSC-
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHcCCC---EEEeCCCcchhhhhccCCCEEEECCC-
Confidence 4889999996 54 688998888886 67999998 55557888765431 122211111 1111135898885322
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-. .+....+.|+++|+++....
T Consensus 225 -----~~-~~~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 225 -----GD-VGIQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp -----HH-HHHHHGGGEEEEEEEEECCS
T ss_pred -----cH-HHHHHHHhccCCCEEEEeCC
Confidence 12 33788999999999988754
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.15 Score=46.72 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=61.0
Q ss_pred CCCCEEEEEc-C-cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 019684 109 NRNMLVVDVG-G-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiG-c-G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~ 183 (337)
.++++||-.| + |.|..+..+++.. +++|++++ +++..+.+++... . ..+..+-.+.. .....+|+|+-..
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~lGa-~--~v~~~~~~~~~~~~~~~~g~D~vid~~ 256 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRKLGA-D--DVIDYKSGSVEEQLKSLKPFDFILDNV 256 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHTTC-S--EEEETTSSCHHHHHHTSCCBSEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHHcCC-C--EEEECCchHHHHHHhhcCCCCEEEECC
Confidence 4789999999 3 4688888888875 67999998 6777777765432 1 11211111100 0113599988543
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. .....+....+.|++||+++....
T Consensus 257 g-----~~~~~~~~~~~~l~~~G~iv~~g~ 281 (375)
T 2vn8_A 257 G-----GSTETWAPDFLKKWSGATYVTLVT 281 (375)
T ss_dssp C-----TTHHHHGGGGBCSSSCCEEEESCC
T ss_pred C-----ChhhhhHHHHHhhcCCcEEEEeCC
Confidence 2 222355677889999999988754
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.35 E-value=0.75 Score=39.43 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=66.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC----------CCCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF----------PTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~----------~~~~f 176 (337)
.++++|=.|++.|. .+..++++ +.+|+.+|.+++.++...+... .++.++.+|+.+... .-+..
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEFG-PRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-GGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC-CcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 56889999987653 44455555 7899999999888776665432 468889999976421 01368
Q ss_pred cEEEecccccccC-----CHH--------------HHHHHHHHhccCCCEEEEEcC
Q 019684 177 DRYVSAGSIEYWP-----DPQ--------------RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~~-----~~~--------------~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+++.+....... +.+ .+.+.+...++.+|.++.+..
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 9988865544321 111 245566667777888887643
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=90.05 E-value=0.2 Score=44.43 Aligned_cols=91 Identities=24% Similarity=0.354 Sum_probs=54.1
Q ss_pred CeEEEEcCCCC-CC-CCCCCccEEEecccccccC--------------------CHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 158 ECKIVEGDAED-LP-FPTDYADRYVSAGSIEYWP--------------------DPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 158 ~~~~~~~d~~~-~~-~~~~~fD~i~~~~~l~~~~--------------------~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+++++++|+.+ +. +++++||+|++.--..... ....+++++.++|||||.+++.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 46789999855 32 4567899999953332111 12357889999999999998864321
Q ss_pred CchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 216 PTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
.... ... ..+..+.-...+..+++++||.....
T Consensus 101 ~~~~--~~~-g~~~~~~~~~~l~~~~~~~Gf~~~~~ 133 (297)
T 2zig_A 101 AVAR--RRF-GRHLVFPLHADIQVRCRKLGFDNLNP 133 (297)
T ss_dssp EEEC--C-----EEEECHHHHHHHHHHHTTCEEEEE
T ss_pred cccc--ccC-CcccccccHHHHHHHHHHcCCeeecc
Confidence 1000 000 00000111356778899999987654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.96 E-value=4.9 Score=30.12 Aligned_cols=91 Identities=15% Similarity=0.246 Sum_probs=52.8
Q ss_pred CCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEeccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGS 184 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~ 184 (337)
+.+|+=+|+|. ++..+++.+ .+.+|+++|.+++.++...+.. ++.++.+|..+.. ..-..+|+|+...-
T Consensus 4 ~m~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 4 GMYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---DALVINGDCTKIKTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp -CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---CcEEEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence 46899998864 333333221 2689999999998877666432 4556777764321 11235898886531
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEE
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i 210 (337)
-. .....+..+.+.+.++ .+++
T Consensus 79 ~~---~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 79 KE---EVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred Cc---hHHHHHHHHHHHcCCC-EEEE
Confidence 11 1123455566667775 4444
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.22 Score=45.82 Aligned_cols=101 Identities=21% Similarity=0.146 Sum_probs=58.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++++|+=+|+|. |..+...+... +.+|+++|.++..++.+.+.... .+.....+..++.-.-..+|+|+..-.....
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g~-~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~ 244 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFCG-RIHTRYSSAYELEGAVKRADLVIGAVLVPGA 244 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTT-SSEEEECCHHHHHHHHHHCSEEEECCCCTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcCC-eeEeccCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 578999999964 54444555554 57999999999988887764321 1211111111111001248999874322211
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEc
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+.-+.++..+.+||||.++...
T Consensus 245 ~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 245 KAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCcceecHHHHhcCCCCcEEEEEe
Confidence 112223466778899999987654
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=89.78 E-value=0.87 Score=40.65 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=78.3
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEeccccc---
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIE--- 186 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~--- 186 (337)
.+|||+=||.|.+..-+.+. |.+ +.++|+++.+.+.-+.+.. ..++.+|+.++... -..+|+++...--.
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~---~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS 75 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS---AKLIKGDISKISSDEFPKCDGIIGGPPSQSWS 75 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCC---SEEEESCGGGCCGGGSCCCSEEECCCCGGGTE
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC---CCcccCChhhCCHhhCCcccEEEecCCCCCcC
Confidence 37999999999999988776 565 4589999999998888864 35788999776421 23589988732111
Q ss_pred ------ccCCHH-HHHH---HHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 ------YWPDPQ-RGIR---EAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ------~~~~~~-~~l~---~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...|+. .++. ++.+.++|. +++.|....-.... .-...+.+.+.|++.||.+. ...+.
T Consensus 76 ~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~~--------~~~~~~~i~~~l~~~GY~v~-~~vln 143 (331)
T 3ubt_Y 76 EGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQR--------HNKAVQEFIQEFDNAGYDVH-IILLN 143 (331)
T ss_dssp ETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGCT--------TSHHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred CCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeeccccccc--------ccchhhhhhhhhccCCcEEE-EEecc
Confidence 123433 3333 344556784 33333322111000 00124567788999999753 33343
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.75 E-value=0.71 Score=41.34 Aligned_cols=88 Identities=13% Similarity=-0.025 Sum_probs=53.9
Q ss_pred CCeEEEEcCCCC-CC-CCCCCccEEEeccccccc--------------CCHHHHHHHHHHhccCCCEEEEEcCCC--Cch
Q 019684 157 KECKIVEGDAED-LP-FPTDYADRYVSAGSIEYW--------------PDPQRGIREAYRVLKLGGKACIIGPVY--PTF 218 (337)
Q Consensus 157 ~~~~~~~~d~~~-~~-~~~~~fD~i~~~~~l~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~ 218 (337)
.+..++++|..+ +. +++++||+|++.--.... ......++++.++|+|||.+++..... ...
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~ 92 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV 92 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC
Confidence 356788888743 33 557789999985322111 123578999999999999998864332 100
Q ss_pred hHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 219 WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
. .........+.++++++||......
T Consensus 93 ~--------~~~~~~~~~i~~~~~~~Gf~~~~~i 118 (323)
T 1boo_A 93 P--------ARSIYNFRVLIRMIDEVGFFLAEDF 118 (323)
T ss_dssp E--------EECCHHHHHHHHHHHTTCCEEEEEE
T ss_pred c--------ccccchHHHHHHHHHhCCCEEEEEE
Confidence 0 0000112345567889999866543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.88 E-value=0.3 Score=44.68 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=56.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++++|+=+|+|. |..+...+... +.+|+++|.++..++.+.+.... .+.....+..++.-.-..+|+|+..-.....
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~~g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~ 242 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDVFGG-RVITLTATEANIKKSVQHADLLIGAVLVPGA 242 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTT-SEEEEECCHHHHHHHHHHCSEEEECCC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhcCc-eEEEecCCHHHHHHHHhCCCEEEECCCCCcc
Confidence 468999999963 44444444443 67999999999888877654321 2222111111111001258999865433211
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEc
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+.-+.++..+.++|||.++...
T Consensus 243 ~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 243 KAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ---CCSCHHHHTTSCTTCEEEECC
T ss_pred ccchhHHHHHHHhhcCCCEEEEEe
Confidence 111123567788899999887654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.64 E-value=1.3 Score=38.73 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=69.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----------CCCCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----------FPTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----------~~~~~f 176 (337)
+++.+|=-|++.|. .+..|+++ +++|+.+|.+++.++.+.+... .++.++.+|+.+.. -.-+..
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~--Ga~V~i~~r~~~~l~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAE--GARVFITGRRKDVLDAAIAEIG-GGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHC-TTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHcC-CCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 67889999988773 55666666 8999999999998887765543 45678889986632 011568
Q ss_pred cEEEecccccccCC--------HH-----------HHHHHHHHhccCCCEEEEEcC
Q 019684 177 DRYVSAGSIEYWPD--------PQ-----------RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~~~--------~~-----------~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+++.+........ ++ ...+.+...|+.+|.++.+..
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS 160 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS 160 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence 99887655433211 11 356667778888888877643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.51 E-value=8.5 Score=31.91 Aligned_cols=138 Identities=10% Similarity=0.055 Sum_probs=72.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCe-EEEEcCCC-CCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKEC-KIVEGDAE-DLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~~~d~~-~~~~~~~~fD~i~~~~~l 185 (337)
.+++||=.|+ +|..+..+++.+ .+.+|++++-++..++.... .++ .++.+|+. .+.-.-+..|+|+.....
T Consensus 20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----RGASDIVVANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----TTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----CCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence 5788998886 344444333321 27899999998876655443 367 88999986 222112458999987665
Q ss_pred cccCCHHHH-------HHHHHHhcc--CCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 186 EYWPDPQRG-------IREAYRVLK--LGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 186 ~~~~~~~~~-------l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
....++... ...+.+.++ ..+++++............. ........+....++++++.|+...-+..
T Consensus 95 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~-~~~~~Y~~sK~~~e~~~~~~gi~~~~lrp 170 (236)
T 3e8x_A 95 GPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPDQGP-MNMRHYLVAKRLADDELKRSSLDYTIVRP 170 (236)
T ss_dssp CTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCGGGSC-GGGHHHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred CCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCh-hhhhhHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 544444321 122222222 23667665432211110000 00000011344566777888887554443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.29 E-value=1.8 Score=33.10 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=54.3
Q ss_pred CCEEEEEcCcc-cH-HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEeccc
Q 019684 111 NMLVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGS 184 (337)
Q Consensus 111 ~~~VLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~ 184 (337)
..+|+=+|||. |. .+..+.+. +.+|+++|.+++.++.+++ .+..++.+|..+.. ..-..+|+|+....
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~----~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLED----EGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH----TTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHH----CCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 46799999964 22 22333333 7899999999998887775 34678888886532 12245898886432
Q ss_pred ccccCCHH--HHHHHHHHhccCCCEEEEE
Q 019684 185 IEYWPDPQ--RGIREAYRVLKLGGKACII 211 (337)
Q Consensus 185 l~~~~~~~--~~l~~~~~~LkpgG~l~i~ 211 (337)
+.. ..+....+.+. ...++..
T Consensus 80 -----~~~~n~~~~~~a~~~~-~~~iia~ 102 (141)
T 3llv_A 80 -----DDEFNLKILKALRSVS-DVYAIVR 102 (141)
T ss_dssp -----CHHHHHHHHHHHHHHC-CCCEEEE
T ss_pred -----CHHHHHHHHHHHHHhC-CceEEEE
Confidence 332 23344445555 4555443
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.06 E-value=0.87 Score=42.11 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=60.4
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC-------------CCC-----
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-------------DLP----- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~-------------~~~----- 170 (337)
++.+|+=+|+|. |..+..++... +++|+++|.++..++.+.+.. .+++..+.. +++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~G----~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~ 263 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASLG----AKFIAVEDEEFKAAETAGGYAKEMSGEYQV 263 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHTT----CEECCCCC-----------------CHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcC----Cceeecccccccccccccchhhhcchhhhh
Confidence 568999999995 66666666665 679999999999888887632 223221110 010
Q ss_pred -----CC--CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 171 -----FP--TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 171 -----~~--~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+. -...|+|+..-.+.--+.+.-+-+++.+.+|||..++=.
T Consensus 264 ~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDv 311 (405)
T 4dio_A 264 KQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDL 311 (405)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEET
T ss_pred hhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEE
Confidence 00 035899986432222122223447889999999988754
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.88 E-value=6.9 Score=33.47 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=58.5
Q ss_pred CEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++||=.|+ |..+..+++.+ .+.+|++++-++...+.... .+++++.+|+.++. -..+|+|+.........
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~D~~d~~--~~~~d~vi~~a~~~~~~ 77 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA----SGAEPLLWPGEEPS--LDGVTHLLISTAPDSGG 77 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH----TTEEEEESSSSCCC--CTTCCEEEECCCCBTTB
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh----CCCeEEEecccccc--cCCCCEEEECCCccccc
Confidence 68999995 77766665543 26899999998876554443 56899999998866 44689999866554433
Q ss_pred CH--HHHHHHHHHhccCCCEEEEE
Q 019684 190 DP--QRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 190 ~~--~~~l~~~~~~LkpgG~l~i~ 211 (337)
++ ..+++.+.+.-..-.++++.
T Consensus 78 ~~~~~~l~~a~~~~~~~~~~~v~~ 101 (286)
T 3ius_A 78 DPVLAALGDQIAARAAQFRWVGYL 101 (286)
T ss_dssp CHHHHHHHHHHHHTGGGCSEEEEE
T ss_pred cHHHHHHHHHHHhhcCCceEEEEe
Confidence 33 22333333321222556554
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=87.86 E-value=0.26 Score=44.95 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=59.4
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++.+||=+|+|. |..+..++... +++|+++|.+++.++.+.+... ..+.....+..++.-.-..+|+|+..-.....
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhC-ceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 348999999963 55555555554 5699999999988887765432 12222211111110001248999875544322
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..+.-+.++..+.++|||.++....
T Consensus 244 ~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 244 RAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred CCCeecCHHHHhhCCCCCEEEEEec
Confidence 1111124556788999998876543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.54 E-value=2.6 Score=33.83 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----C-CCCCccEEEec
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----F-PTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~-~~~~fD~i~~~ 182 (337)
.+.+|+=+|||. |......+.. . +.+|+++|.+++.++.+++. ++..+.+|..+.. . .-..+|+|+..
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~-~~g~~V~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRA-RYGKISLGIEIREEAAQQHRSE----GRNVISGDATDPDFWERILDTGHVKLVLLA 112 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHH-HHCSCEEEEESCHHHHHHHHHT----TCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-ccCCeEEEEECCHHHHHHHHHC----CCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence 356899999864 3332222222 2 57899999999988877653 4556777775421 1 12458988863
Q ss_pred ccccccCCHH--HHHHHHHHhccCCCEEEEE
Q 019684 183 GSIEYWPDPQ--RGIREAYRVLKLGGKACII 211 (337)
Q Consensus 183 ~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~ 211 (337)
. ++.. ..+-...+.+.|++.++..
T Consensus 113 ~-----~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 113 M-----PHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp C-----SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred C-----CChHHHHHHHHHHHHHCCCCEEEEE
Confidence 2 2332 2333455666777777764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=86.64 E-value=0.29 Score=44.91 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=59.5
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC---------C------------
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA---------E------------ 167 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~---------~------------ 167 (337)
++.+|+=+|+|. |..+..++... +++|+++|.++..++.+.+. +.+++..+. .
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~l----Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~ 257 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRSV----GAQWLDLGIDAAGEGGYARELSEAERAQQQQ 257 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHHT----TCEECCCC-------------CHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCeEEeccccccccccchhhhhHHHHhhhHH
Confidence 568999999984 55555555554 67999999999988888763 223322110 0
Q ss_pred CCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 168 DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 168 ~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
.+.-.-...|+|+..-....-+.+.-+-+++.+.+|||+.++=.
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence 00000146899997532221112222347888999999887654
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=86.45 E-value=1.1 Score=42.44 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=44.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCe-EEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCC
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDL 169 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~ 169 (337)
..+++|+-||.|.+..-+... +.+ |.++|+++.+.+.-+.+... ++..++.+|+.++
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i 146 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDI 146 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhh
Confidence 468999999999999998876 555 77899999999988888632 3455677888543
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.68 E-value=7.3 Score=33.24 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=64.7
Q ss_pred CCCEEEEEcCccc---HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CC-----CCCc
Q 019684 110 RNMLVVDVGGGTG---FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP-----TDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~-----~~~f 176 (337)
.+++||=.|++.| ..+..+++. +.+|+.++.+++.++...+... .++.++.+|+.+.. +. -+..
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVAALE-AEAIAVVADVSDPKAVEAVFAEALEEFGRL 81 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc-CceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678888887655 234445555 7899999999887776665543 56888899987632 11 1357
Q ss_pred cEEEecccccccC-----CH---H-----------HHHHHHHHhccCCCEEEEEcCC
Q 019684 177 DRYVSAGSIEYWP-----DP---Q-----------RGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 177 D~i~~~~~l~~~~-----~~---~-----------~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+++.+....... +. + .+.+.+...++.+|.++.+...
T Consensus 82 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~ 138 (263)
T 2a4k_A 82 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV 138 (263)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 9999876543321 11 1 2345555556447888877543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=85.52 E-value=3.3 Score=38.36 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=61.0
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~ 184 (337)
...+|+=+|+|. |......... .+..|+++|.+++.++.+++ .++.++.+|+.+.. ..-...|+|++..
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~-~g~~vvvId~d~~~v~~~~~----~g~~vi~GDat~~~~L~~agi~~A~~viv~~- 76 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLS-SGVKMVVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGAAKAEVLINAI- 76 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEECCHHHHHHHHH----TTCCCEESCTTCHHHHHHTTTTTCSEEEECC-
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHh----CCCeEEEcCCCCHHHHHhcCCCccCEEEECC-
Confidence 346799999874 3333332323 27899999999999998875 35667889987632 2234588887632
Q ss_pred ccccCCHH--HHHHHHHHhccCCCEEEEE
Q 019684 185 IEYWPDPQ--RGIREAYRVLKLGGKACII 211 (337)
Q Consensus 185 l~~~~~~~--~~l~~~~~~LkpgG~l~i~ 211 (337)
++.. ..+....+.+.|...++..
T Consensus 77 ----~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 77 ----DDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp ----SSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ----CChHHHHHHHHHHHHhCCCCeEEEE
Confidence 3433 3556667778888887764
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=85.27 E-value=3.2 Score=39.40 Aligned_cols=90 Identities=19% Similarity=0.095 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.++++|+=+|+|. |......++.. +.+|+++|.++...+.+.+. +.++ .++.+. . ...|+|+....-.+
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~----Ga~~--~~l~e~-l--~~aDvVi~atgt~~ 341 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMME----GFDV--VTVEEA-I--GDADIVVTATGNKD 341 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----TCEE--CCHHHH-G--GGCSEEEECSSSSC
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCEE--ecHHHH-H--hCCCEEEECCCCHH
Confidence 3789999999974 55555555554 67999999999888777653 2222 222221 1 35899997543333
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+-+ .+..+.+||||+++....
T Consensus 342 ~i~-----~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 342 IIM-----LEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp SBC-----HHHHHHSCTTCEEEECSS
T ss_pred HHH-----HHHHHhcCCCcEEEEeCC
Confidence 221 356778999999987654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=85.18 E-value=0.64 Score=42.74 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=57.4
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC-------------C-------
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE-------------D------- 168 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~-------------~------- 168 (337)
++.+|+=+|+|. |..+..++... +.+|+++|.++...+.+++.. .++...|.. .
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~~G----a~~~~i~~~~~~~~~~~~~~~~~~s~~~~~ 245 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLG----GKFITVDDEAMKTAETAGGYAKEMGEEFRK 245 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTT----CEECCC-----------------------C
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC----CeEEeecccccccccccccchhhcCHHHHh
Confidence 678999999984 56666666665 578999999988777776521 122200100 0
Q ss_pred -----CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 169 -----LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 169 -----~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+.-.-..+|+|+.......-+.+.-+.++..+.+||||.++-..
T Consensus 246 ~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 246 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred hhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 10001348999954322111121112356778899999987654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=84.42 E-value=7.3 Score=33.08 Aligned_cols=102 Identities=8% Similarity=0.064 Sum_probs=64.1
Q ss_pred CCCEEEEEcCc--ccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHh---hCCCCCeEEEEcCCCCCC-----CC----
Q 019684 110 RNMLVVDVGGG--TGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKECKIVEGDAEDLP-----FP---- 172 (337)
Q Consensus 110 ~~~~VLDiGcG--~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~---~~~~~~~~~~~~d~~~~~-----~~---- 172 (337)
.+++||=.|++ .|. ++..+++. +.+|+.++.++...+.+.+ .....++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 57889999976 332 45556666 8899999887654443333 233236889999997643 10
Q ss_pred -CCCccEEEecccccc----c-----CCHH--------------HHHHHHHHhccCCCEEEEEcC
Q 019684 173 -TDYADRYVSAGSIEY----W-----PDPQ--------------RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 173 -~~~fD~i~~~~~l~~----~-----~~~~--------------~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+..|+++.+..+.. . .+.+ .+++.+...++++|.++++..
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 136898887655432 1 1111 245666777788898887643
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=84.30 E-value=7.8 Score=34.27 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=59.1
Q ss_pred CCEEEEEcCcc--cHHHHHHHhhCCCC--eEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 111 NMLVVDVGGGT--GFTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 111 ~~~VLDiGcG~--G~~~~~l~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
..+|.=||+|. +.++..+++. +. +|+++|.+++.++.+.+... +.-...|..+. .-...|+|+..--..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~~~G~---~~~~~~~~~~~--~~~~aDvVilavp~~ 105 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDLGI---IDEGTTSIAKV--EDFSPDFVMLSSPVR 105 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHTTS---CSEEESCTTGG--GGGCCSEEEECSCGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHHHCCC---cchhcCCHHHH--hhccCCEEEEeCCHH
Confidence 36899999885 3455556655 55 99999999998888875422 11122333320 113479998654332
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
....+++++...++||..++-..
T Consensus 106 ---~~~~vl~~l~~~l~~~~iv~d~~ 128 (314)
T 3ggo_A 106 ---TFREIAKKLSYILSEDATVTDQG 128 (314)
T ss_dssp ---GHHHHHHHHHHHSCTTCEEEECC
T ss_pred ---HHHHHHHHHhhccCCCcEEEECC
Confidence 24578889999999987665443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=84.22 E-value=6.7 Score=34.13 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=64.4
Q ss_pred CCCEEEEEcCccc-----HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCC-----C-----CC
Q 019684 110 RNMLVVDVGGGTG-----FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLP-----F-----PT 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G-----~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~-----~-----~~ 173 (337)
.+++||=.|++.| ..+..+++. +.+|+.++.++...+.+.+... ..++.++.+|+.+.. + .-
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW 107 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 5788999997633 345556666 7899999998654444333211 135788899997632 0 01
Q ss_pred CCccEEEecccccc-------c--CCHH--------------HHHHHHHHhccCCCEEEEEcC
Q 019684 174 DYADRYVSAGSIEY-------W--PDPQ--------------RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 174 ~~fD~i~~~~~l~~-------~--~~~~--------------~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+..|+++.+..+.. + .+.+ .+.+.+.+.++.+|.++.+..
T Consensus 108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 46899998765542 0 1111 356677777888898887643
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=84.05 E-value=0.56 Score=43.45 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=58.0
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCC---------------------
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE--------------------- 167 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~--------------------- 167 (337)
++.+|+=+|+|. |..+..++..+ +.+|+++|.++..++.+++. +.++...|..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~l----Ga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 245 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----GAEFLELDFKEEAGSGDGYAKVMSDAFIKAE 245 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHHT----TCEECCC--------CCHHHHHHSHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc----CCEEEEecccccccccccchhhccHHHHHHH
Confidence 578999999985 66666666665 57999999999888777543 2223211110
Q ss_pred --CCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 168 --DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 168 --~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.+.-.-...|+|+....+.--+.+.-+-++..+.++|||.++-..
T Consensus 246 ~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 246 MELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 010000247999875322111111112256778899999987654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.86 E-value=7.8 Score=32.50 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----C-CCCCccEE
Q 019684 109 NRNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----F-PTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~-~~~~fD~i 179 (337)
.++++||=.|++.|. ++..+++. +.+|+.++.++..++...+... .++.+..+|+.+.. + ..+..|++
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~id~l 88 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKL--GSKVIISGSNEEKLKSLGNALK-DNYTIEVCNLANKEECSNLISKTSNLDIL 88 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHC-SSEEEEECCTTSHHHHHHHHHTCSCCSEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHhc-cCccEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence 367889988876552 34445555 7899999999988777665543 46788888986532 1 11468999
Q ss_pred Eeccccc
Q 019684 180 VSAGSIE 186 (337)
Q Consensus 180 ~~~~~l~ 186 (337)
+.+....
T Consensus 89 i~~Ag~~ 95 (249)
T 3f9i_A 89 VCNAGIT 95 (249)
T ss_dssp EECCC--
T ss_pred EECCCCC
Confidence 8866543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=83.84 E-value=3.8 Score=37.18 Aligned_cols=121 Identities=10% Similarity=0.014 Sum_probs=71.0
Q ss_pred CCCEEEEEcCcc-c-HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
...+|.=||+|. | .++..+++. +.+|+++|.+++.++.+.+. ++.. ..+..+.--.....|+|+..---.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~a~~~DvVi~~vp~~- 92 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE----GIAG-ARSIEEFCAKLVKPRVVWLMVPAA- 92 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT----TCBC-CSSHHHHHHHSCSSCEEEECSCGG-
T ss_pred cCCEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC----CCEE-eCCHHHHHhcCCCCCEEEEeCCHH-
Confidence 357899999884 2 344555555 78999999999888777643 2111 111111100012358888643222
Q ss_pred cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 188 WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 188 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
..+.++.++...|++|..++-.....+. +...+.+.+++.|...++.-..+
T Consensus 93 --~v~~vl~~l~~~l~~g~iiId~st~~~~---------------~~~~~~~~l~~~g~~~vdapVsG 143 (358)
T 4e21_A 93 --VVDSMLQRMTPLLAANDIVIDGGNSHYQ---------------DDIRRADQMRAQGITYVDVGTSG 143 (358)
T ss_dssp --GHHHHHHHHGGGCCTTCEEEECSSCCHH---------------HHHHHHHHHHTTTCEEEEEEEEC
T ss_pred --HHHHHHHHHHhhCCCCCEEEeCCCCChH---------------HHHHHHHHHHHCCCEEEeCCCCC
Confidence 4567888888889887766543332211 23445566777888777665443
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.70 E-value=3.3 Score=35.82 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CC-----CCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP-----TDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~-----~~~f 176 (337)
.+++||=.|++.|. .+..+++. +.+|+.+|.+++.++.+.+.. ..++.++.+|+.+.. +. -+..
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 104 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADE--GCHVLCADIDGDAADAAATKI-GCGAAACRVDVSDEQQIIAMVDACVAAFGGV 104 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH-CSSCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc-CCcceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56788888877653 44555555 889999999988777665544 246788999997642 00 1368
Q ss_pred cEEEecccccc
Q 019684 177 DRYVSAGSIEY 187 (337)
Q Consensus 177 D~i~~~~~l~~ 187 (337)
|+++.+....+
T Consensus 105 D~lvnnAg~~~ 115 (277)
T 3gvc_A 105 DKLVANAGVVH 115 (277)
T ss_dssp CEEEECCCCCC
T ss_pred CEEEECCCCCC
Confidence 99998765543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=83.56 E-value=4 Score=34.74 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=50.9
Q ss_pred CCCEEEEEcCccc---HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CC-----CCCc
Q 019684 110 RNMLVVDVGGGTG---FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FP-----TDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~-----~~~f 176 (337)
.+++||=.|++.| ..+..++++ +.+|+.+|.+++.++...+... .++.++.+|+.+.. +. -+..
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 83 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVRE--GATVAIADIDIERARQAAAEIG-PAAYAVQMDVTRQDSIDAAIAATVEHAGGL 83 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHC-TTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC-CCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 4678998887655 244455555 7899999999887766655442 46788999997632 10 1368
Q ss_pred cEEEeccccc
Q 019684 177 DRYVSAGSIE 186 (337)
Q Consensus 177 D~i~~~~~l~ 186 (337)
|+++.+....
T Consensus 84 d~lv~~Ag~~ 93 (259)
T 4e6p_A 84 DILVNNAALF 93 (259)
T ss_dssp CEEEECCCCC
T ss_pred CEEEECCCcC
Confidence 9999876553
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=83.25 E-value=11 Score=31.16 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=47.5
Q ss_pred EEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCCCccEEEec
Q 019684 113 LVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADRYVSA 182 (337)
Q Consensus 113 ~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~i~~~ 182 (337)
+||=.|++.|. .+..+++. +.+|+.+|.+++.++.+.+.. ..++.++.+|+.+.. ...+.+|+++.+
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~ 79 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAE--GKATYLTGRSESKLSTVTNCL-SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHS 79 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTC-SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEEC
T ss_pred EEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH-hhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEe
Confidence 57777776552 33444555 789999999998888777655 256778889986532 112346998876
Q ss_pred cccc
Q 019684 183 GSIE 186 (337)
Q Consensus 183 ~~l~ 186 (337)
....
T Consensus 80 Ag~~ 83 (230)
T 3guy_A 80 AGSG 83 (230)
T ss_dssp CCCC
T ss_pred CCcC
Confidence 5543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.83 E-value=5.9 Score=33.77 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=62.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCC-----CC-----
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP-----FP----- 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~-----~~----- 172 (337)
.+++||=.|++.|. .+..+++. +.+|+++|.++...+...+... ..++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 46788888876542 34445555 7899999998876655433321 235788899987632 10
Q ss_pred CCCccEEEecccccccCCHHH-----------HHHHHHHhccC-----CCEEEEEcC
Q 019684 173 TDYADRYVSAGSIEYWPDPQR-----------GIREAYRVLKL-----GGKACIIGP 213 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~~-----------~l~~~~~~Lkp-----gG~l~i~~~ 213 (337)
-+..|+++.+.......++++ ..+.+.+.++. +|.++.+..
T Consensus 84 ~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS 140 (267)
T 2gdz_A 84 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS 140 (267)
T ss_dssp HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred cCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence 135799998766554445442 23445555543 577777643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.70 E-value=9.2 Score=32.80 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=64.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCC------------HHHHHHHHhhC--CCCCeEEEEcCCCCCC--
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQS------------PHQLAKAKQKE--PLKECKIVEGDAEDLP-- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s------------~~~~~~a~~~~--~~~~~~~~~~d~~~~~-- 170 (337)
.+++||=.|++.|. .+..|++. +.+|+.+|.+ ...++.+.+.. ...++.++.+|+.+..
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEE--GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 56889999987653 44555555 7899999987 55544443321 1256888999997632
Q ss_pred ---CC-----CCCccEEEecccccccC---C---HH-----------HHHHHHHHhccCCCEEEEEcC
Q 019684 171 ---FP-----TDYADRYVSAGSIEYWP---D---PQ-----------RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 171 ---~~-----~~~fD~i~~~~~l~~~~---~---~~-----------~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+. -+..|+++.+....... + ++ .+.+.+...++.+|.++.+..
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 10 13689999866553321 1 11 345666777778899887644
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=81.70 E-value=13 Score=32.38 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=53.7
Q ss_pred CCEEEEEcCcc-c-HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 111 NMLVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 111 ~~~VLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
..+|.=||+|. | .++..+++. +.+|++.|.+++.++.+.+.. ......|..+.- ...|+|+.. +
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~g----~~~~~~~~~e~~---~~aDvvi~~-----v 72 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLAEG----ACGAAASAREFA---GVVDALVIL-----V 72 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT----CSEEESSSTTTT---TTCSEEEEC-----C
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHcC----CccccCCHHHHH---hcCCEEEEE-----C
Confidence 46799999885 2 344555555 789999999999888777542 222234443321 347888863 4
Q ss_pred CCH---HHHH---HHHHHhccCCCEEEEE
Q 019684 189 PDP---QRGI---REAYRVLKLGGKACII 211 (337)
Q Consensus 189 ~~~---~~~l---~~~~~~LkpgG~l~i~ 211 (337)
++. +.++ +++...++||..++-.
T Consensus 73 p~~~~~~~v~~~~~~l~~~l~~g~ivv~~ 101 (303)
T 3g0o_A 73 VNAAQVRQVLFGEDGVAHLMKPGSAVMVS 101 (303)
T ss_dssp SSHHHHHHHHC--CCCGGGSCTTCEEEEC
T ss_pred CCHHHHHHHHhChhhHHhhCCCCCEEEec
Confidence 443 2343 5556778887766543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=81.20 E-value=6 Score=30.67 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~ 183 (337)
.++.+|+=+|||. |......+.. .+.+|+++|.+++.++.+++ ..+..++.+|..+.. ..-..+|+|+...
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~-~g~~V~vid~~~~~~~~~~~---~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASS-SGHSVVVVDKNEYAFHRLNS---EFSGFTVVGDAAEFETLKECGMEKADMVFAFT 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCGGGGGGSCT---TCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHh---cCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence 3678999999874 4333333333 26799999999876544331 234566667764311 1123588888643
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.- +.....+..+.+.+.|...++...
T Consensus 93 ~~---~~~~~~~~~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 93 ND---DSTNFFISMNARYMFNVENVIARV 118 (155)
T ss_dssp SC---HHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred CC---cHHHHHHHHHHHHHCCCCeEEEEE
Confidence 21 111234444555555656665543
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=81.14 E-value=23 Score=29.60 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=60.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC--CCCe-EEEEeCCH--HHHHHHHhhCCCCCeEEEEcCCCCC-C-----CC-----C
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV--DAKN-VTILDQSP--HQLAKAKQKEPLKECKIVEGDAEDL-P-----FP-----T 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~--~~~~-v~gvD~s~--~~~~~a~~~~~~~~~~~~~~d~~~~-~-----~~-----~ 173 (337)
.+++||=.|++ |.++..+++.+ .+.+ |+.++.++ ..++...+.....++.++.+|+.+. . +. -
T Consensus 4 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 4 TNKNVIFVAAL-GGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence 46789988875 45544444432 2665 88888765 4444444433334678899999764 2 01 1
Q ss_pred CCccEEEecccccccCCHH-----------HHHHHHHHhccC-----CCEEEEEcC
Q 019684 174 DYADRYVSAGSIEYWPDPQ-----------RGIREAYRVLKL-----GGKACIIGP 213 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~-----------~~l~~~~~~Lkp-----gG~l~i~~~ 213 (337)
+..|+++.+.......+.+ .+.+.+.+.++. +|.++.+..
T Consensus 83 g~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS 138 (254)
T 1sby_A 83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS 138 (254)
T ss_dssp SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred CCCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence 3589999876654444443 234455555532 577777643
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=80.99 E-value=0.89 Score=42.35 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=32.2
Q ss_pred CCEEEEEcCcccHHHHHHHhhC---C--CCeEEEEeCCHHHHHHHHhh
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHV---D--AKNVTILDQSPHQLAKAKQK 153 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~---~--~~~v~gvD~s~~~~~~a~~~ 153 (337)
..+|+|+|.|+|.++..+.+.. . ..+++.||+|+...+.-+++
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~ 185 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRET 185 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHH
Confidence 4689999999999988876542 1 24899999998765544443
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.24 E-value=1.4 Score=39.60 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=56.0
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCCccEEEe
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~i~~ 181 (337)
+++++||=.|+ +.|..+..+++..++.+|++++ ++...+.++ ... . .++. +-.++ ....+.+|+|+-
T Consensus 141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga-~--~~~~-~~~~~~~~~~~~~~~g~Dvv~d 214 (349)
T 4a27_A 141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSV-T--HLFD-RNADYVQEVKRISAEGVDIVLD 214 (349)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGS-S--EEEE-TTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCC-c--EEEc-CCccHHHHHHHhcCCCceEEEE
Confidence 48899999998 4588888888876668999998 566666665 211 1 1222 11111 012346999985
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...-. .+....+.|++||++++...
T Consensus 215 ~~g~~-------~~~~~~~~l~~~G~~v~~G~ 239 (349)
T 4a27_A 215 CLCGD-------NTGKGLSLLKPLGTYILYGS 239 (349)
T ss_dssp ECC--------------CTTEEEEEEEEEEC-
T ss_pred CCCch-------hHHHHHHHhhcCCEEEEECC
Confidence 43211 23678899999999998753
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=80.10 E-value=6.6 Score=33.37 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-cccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCC-----CC-----
Q 019684 110 RNMLVVDVGG-GTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLP-----FP----- 172 (337)
Q Consensus 110 ~~~~VLDiGc-G~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~-----~~----- 172 (337)
.+++||=.|+ |.|. ++..++++ +.+|+.+|.++..++...+.. ...++.++.+|+.+.. +.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 5678998887 5543 44556666 789999999988776655442 2246889999997632 00
Q ss_pred CCCccEEEeccccc
Q 019684 173 TDYADRYVSAGSIE 186 (337)
Q Consensus 173 ~~~fD~i~~~~~l~ 186 (337)
.+..|+++.+..+.
T Consensus 99 ~g~id~li~~Ag~~ 112 (266)
T 3o38_A 99 AGRLDVLVNNAGLG 112 (266)
T ss_dssp HSCCCEEEECCCCC
T ss_pred hCCCcEEEECCCcC
Confidence 13689999876653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 337 | ||||
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 1e-14 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-13 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-13 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 6e-13 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-12 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-12 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 4e-12 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 7e-11 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 8e-11 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 6e-10 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 6e-10 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 2e-09 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-08 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 2e-08 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-08 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 4e-08 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 7e-08 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 7e-08 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 2e-07 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 7e-07 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 1e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-06 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 4e-06 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 4e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 4e-06 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 5e-06 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 6e-06 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 7e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 2e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-05 | |
| d1vlma_ | 208 | c.66.1.41 (A:) Possible histamine N-methyltransfer | 6e-05 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 8e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 1e-04 | |
| d1i4wa_ | 322 | c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake | 1e-04 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 5e-04 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 7e-04 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 7e-04 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 0.001 |
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 70.7 bits (172), Expect = 1e-14
Identities = 28/179 (15%), Positives = 63/179 (35%), Gaps = 3/179 (1%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKA 150
++ +D + + + +VD G G G+ L ++ + T +D LA+A
Sbjct: 9 YYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA 68
Query: 151 KQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209
++ L + + D D + + + P+ +++ +K GGK
Sbjct: 69 RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128
Query: 210 IIGPVYPTFWLSRYFADVW-MLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGL 267
P + + S F + + F+ ++ + IG K + G+
Sbjct: 129 CFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGV 187
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.6 bits (167), Expect = 2e-13
Identities = 24/216 (11%), Positives = 54/216 (25%), Gaps = 39/216 (18%)
Query: 68 QHKKEAFWFYRFLSIVYDHVINP----------------GHWTEDMRDDALEPADLSNRN 111
K + + FL IVY I+P G + D + L +
Sbjct: 159 IDKIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQL-KKG 217
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------------KEPLKE 158
+D+G G G + +
Sbjct: 218 DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277
Query: 159 CKIVEGDAEDLPFPTDYADRY--VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP 216
++ D + + + + + D + + + + K+G K + +
Sbjct: 278 EFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRS 337
Query: 217 -----TFWLSRYFADVW--MLFPKEEEYIEWFQKAG 245
F+ + + +E+ + W G
Sbjct: 338 LTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGG 373
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 66.5 bits (161), Expect = 2e-13
Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 14/164 (8%)
Query: 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP---HQLAKAKQKEPLKE 158
++ A+ V+D+G G G T L +V + +D + + Q++ ++
Sbjct: 9 IKTAEC-RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVEN 65
Query: 159 CKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF 218
+ +G AE LPFP D D + ++ D ++ +RE RVLK G+ ++ P
Sbjct: 66 VRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED 125
Query: 219 WLSRYFADVWML--------FPKEEEYIEWFQKAGFKDVQLKRI 254
+ F + E+ F +++
Sbjct: 126 PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 169
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 65.5 bits (159), Expect = 6e-13
Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 23/181 (12%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
++ + + + + +VDVGGGTG T I + + D+ P +
Sbjct: 62 SDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS 120
Query: 152 QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIREAYRVLKLGG 206
V GD AD + + W D + +EA G
Sbjct: 121 GSN---NLTYVGGDMF---TSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRG 174
Query: 207 KACIIGPVYPT------FWLSRYFADVWMLFPK-----EEEYIEWFQKAGFKDVQLKRIG 255
K II V + DV M EEE+ + F +AGF+ ++ +
Sbjct: 175 KVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLT 234
Query: 256 P 256
Sbjct: 235 G 235
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.9 bits (154), Expect = 3e-12
Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 30/199 (15%)
Query: 76 FYRFLSIVYDH-VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
F RFL+ +H + + + + + + ++ +GGG G L I+ V A
Sbjct: 7 FRRFLNHSTEHQCMQ--EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQA 64
Query: 135 K------NVTILDQSPHQLAKAK------------QKEPLKECKIVEGDAEDLPFPTDYA 176
+ N +++ S Q+AK K + KE
Sbjct: 65 QYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKW 124
Query: 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKE-- 234
D + Y D ++ + +L K II + W + + FP++
Sbjct: 125 DFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW-DKLWKKYGSRFPQDDL 183
Query: 235 ------EEYIEWFQKAGFK 247
++ + G K
Sbjct: 184 CQYITSDDLTQMLDNLGLK 202
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 63.5 bits (153), Expect = 3e-12
Identities = 35/251 (13%), Positives = 66/251 (26%), Gaps = 15/251 (5%)
Query: 78 RFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNV 137
R +I +TE+ + ++D+G G+G +
Sbjct: 2 RIFTISESEHRIHNPFTEEKYATLGRVLRMK-PGTRILDLGSGSGEMLCTWARDHGITGT 60
Query: 138 TILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--PFPTDYADRYVSAGSIEYWPDPQRGI 195
I S ++ E L + V D + D G+
Sbjct: 61 GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAE 120
Query: 196 REAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEE-----EYIEWFQKAGFKDVQ 250
+ LK GG I P + + A + + + F G+ V+
Sbjct: 121 ELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 180
Query: 251 LKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDLSKPVNPFVLLLRFVLG 310
+ G R+ ++ A+ D +AE P + +
Sbjct: 181 MVLADQ---EGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAP----KRYVTYARE 233
Query: 311 ALAATYFVLVP 321
F L+
Sbjct: 234 CFGWGVFALIA 244
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 62.7 bits (151), Expect = 4e-12
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 14/164 (8%)
Query: 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI 161
++ A L N V+DV G G V K V D + L A+ +
Sbjct: 8 MQIAALKG-NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQ 64
Query: 162 VEGDAEDLPFPTD---YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF 218
VE D + ++P+P + EAYRVLK GG+ ++ P
Sbjct: 65 VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN 124
Query: 219 WLSRYFADVWML--------FPKEEEYIEWFQKAGFKDVQLKRI 254
F + K+ ++++ ++AGF+ +L
Sbjct: 125 DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 168
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (145), Expect = 7e-11
Identities = 31/201 (15%), Positives = 66/201 (32%), Gaps = 27/201 (13%)
Query: 65 RFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFT 124
+ ++ + F VY + D+ ++ + + L VD+G G G
Sbjct: 113 HSVTDPEKLNNYEPFSPEVYGET------SFDLVAQMIDEIKM-TDDDLFVDLGSGVGQV 165
Query: 125 TLGIVKHVDAKNVTILDQSPHQLAKAKQK------------EPLKECKIVEGDAEDLPFP 172
L + + K+ ++++ A+ + E + GD +
Sbjct: 166 VLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR 225
Query: 173 TDYADRYV-SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT--FWLSRYFADVWM 229
A+ V + + P+ ++E + +K GG+ P P SR +D+
Sbjct: 226 ERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGT 285
Query: 230 LFPKEE-----EYIEWFQKAG 245
+ E + W K
Sbjct: 286 IMRVVELSPLKGSVSWTGKPV 306
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 59.0 bits (142), Expect = 8e-11
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 17/164 (10%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDL 169
+ ++ +G G T + D V ++ +P + + + + GDA
Sbjct: 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP 134
Query: 170 PFPTDYADRYVSAGSIEYWPD-PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
+ ++ P+ + I+ A LK GG + +
Sbjct: 135 QEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYG---------MIAIKARSIDV 185
Query: 229 MLFPKE--EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMG 270
PKE +E E + GFK V I P + + H + +G
Sbjct: 186 TKDPKEIFKEQKEILEAGGFKIVDEVDIEP-FEKD---HVMFVG 225
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 56.7 bits (136), Expect = 6e-10
Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 21/173 (12%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
LE +VDVGGG+G I+ D P + +
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI---E 118
Query: 152 QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKAC 209
PL + V GD D + W D + + ++ L GK
Sbjct: 119 NAPPLSGIEHVGGDMFA---SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 175
Query: 210 IIGPVYP-------TFWLSRYFADVWMLFPK-----EEEYIEWFQKAGFKDVQ 250
I+ + P L ++ + E++Y + + +GF Q
Sbjct: 176 IVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 55.6 bits (133), Expect = 6e-10
Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 29/184 (15%)
Query: 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
PG ++R + A+ +N + VDVG GTG + + + V +D++P ++
Sbjct: 14 PGPTAMEVRCLIMCLAEPG-KNDVAVDVGCGTGG--VTLELAGRVRRVYAIDRNPEAIST 70
Query: 150 AKQKEPL----KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLG 205
+ ++EGDA + D V GS + R LK G
Sbjct: 71 TEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEIL---RIIKDKLKPG 127
Query: 206 GKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRH 265
G+ + + T + E +E + GF DV + + RG
Sbjct: 128 GRIIVTAILLET----------------KFEAMECLRDLGF-DVNITELN--IARGRALD 168
Query: 266 GLIM 269
M
Sbjct: 169 RGTM 172
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 55.0 bits (131), Expect = 2e-09
Identities = 27/177 (15%), Positives = 48/177 (27%), Gaps = 14/177 (7%)
Query: 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA---K 149
+ + + D S V+DVGGG G I T+++ + +
Sbjct: 65 DEDLAYEAPADAYDWSAVRH-VLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRR 123
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209
+ EGD T D +R R L+ GG+
Sbjct: 124 FADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLL 183
Query: 210 IIGPVYPTF-----WLSRYFADVWMLFPK-----EEEYIEWFQKAGFKDVQLKRIGP 256
++ + S + F +E ++ AG + G
Sbjct: 184 VLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGS 240
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.0 bits (124), Expect = 1e-08
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 10/148 (6%)
Query: 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDAEDL 169
+ V+ +G +G T + VD + ++ S K + + DA
Sbjct: 57 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKP 116
Query: 170 PFPTDYADR-YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
+ ++ + I + A LK G+ I+ A+
Sbjct: 117 WKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK----ARSIDSTAEPE 172
Query: 229 MLFPKEEEYIEWFQKAGFKDVQLKRIGP 256
+F + +E FK V+ + P
Sbjct: 173 EVFKSVLKEME----GDFKIVKHGSLMP 196
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 52.1 bits (124), Expect = 2e-08
Identities = 31/176 (17%), Positives = 48/176 (27%), Gaps = 18/176 (10%)
Query: 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 151
+ LE +VDVGGGTG IV D +
Sbjct: 63 DHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV----IE 118
Query: 152 QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211
+ V GD P A + ++ Y L GK +
Sbjct: 119 DAPSYPGVEHVGGDMFV-SIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVA 177
Query: 212 GPVYPTFW------LSRYFADVWMLFPK-------EEEYIEWFQKAGFKDVQLKRI 254
+ P DV ML ++E+ + + AGF+ ++
Sbjct: 178 ECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCN 233
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.9 bits (123), Expect = 3e-08
Identities = 24/201 (11%), Positives = 56/201 (27%), Gaps = 16/201 (7%)
Query: 75 WFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDA 134
+ + V+ I L + V+DV GTG ++ +V+ +
Sbjct: 21 YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS 80
Query: 135 KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAE---------DLPFPTDYADRYVSAGSI 185
+ A ++ KE + E D+P + S
Sbjct: 81 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140
Query: 186 EYWPDPQRG-------IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYI 238
+ PD + ++ +++ GG I Y + ++ K +
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTK 200
Query: 239 EWFQKAGFKDVQLKRIGPKWY 259
+ + + + +
Sbjct: 201 DITTSVLTVNNKAHMVTLDYT 221
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 51.2 bits (121), Expect = 4e-08
Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 13/176 (7%)
Query: 91 GHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP-HQLAK 149
+ D D + V+DVGGG G I + + T+L+ + A+
Sbjct: 62 ACDQDVAFDAPAAAYDWT-NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTAR 120
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGK 207
+ K+ ++ + + AD + + + WPD R + L+ GG+
Sbjct: 121 SYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGR 180
Query: 208 ACIIGPVYP---TFWLSRYFADVWML------FPKEEEYIEWFQKAGFKDVQLKRI 254
I +F D+ ML E++ AG +++++
Sbjct: 181 ILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQL 236
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 7e-08
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 12/148 (8%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---------EPLKECKIVEG 164
V++VG G + + + I++ + + + + V
Sbjct: 57 VLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP 115
Query: 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF 224
D F D Y + + A+R+LK GG + +
Sbjct: 116 TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKY 175
Query: 225 ADVWMLFPKEEEYIEWFQKAGFKDVQLK 252
+D+ ++F E + +AGF+ ++
Sbjct: 176 SDITIMFE--ETQVPALLEAGFRRENIR 201
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 50.3 bits (119), Expect = 7e-08
Identities = 25/195 (12%), Positives = 48/195 (24%), Gaps = 44/195 (22%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECKIVE 163
+ R V+D+G G G L + +D + + A+ + + +
Sbjct: 22 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80
Query: 164 GDAEDLPFPTDYADRYV-SAGSIEYWPDPQRGIR----EAYRVLKLGGKACIIGPVYP-- 216
D+ + S S Y + R L+ GG + P
Sbjct: 81 QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI 140
Query: 217 --------------------------------TFWLSRYFADVWMLFPKEEEYIEWFQKA 244
F L + F ++ F++
Sbjct: 141 LERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRL 200
Query: 245 GFKDVQLKRIGPKWY 259
G V+ K +
Sbjct: 201 GLSLVERKGFIDFYE 215
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 2e-07
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)
Query: 133 DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEY----W 188
+ Q + +A+ K L AD VSA +E
Sbjct: 115 LIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL 174
Query: 189 PDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKD 248
QR + +L+ GG +IG + +++ A + ++ EEE E ++G+K
Sbjct: 175 ASFQRALDHITTLLRPGGHLLLIGALEESWY-LAGEARLTVVPVSEEEVREALVRSGYKV 233
Query: 249 VQLK 252
L+
Sbjct: 234 RDLR 237
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 47.9 bits (112), Expect = 7e-07
Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 27/213 (12%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPA---------------DLSNRNMLVVDVGGG 120
FY + I+ G + E + D + A + R +D+G G
Sbjct: 20 FYF--HVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAG 77
Query: 121 TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR-- 178
G +V+ + L+ +P Q + ++ D
Sbjct: 78 YGGAARFLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSY 136
Query: 179 --YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW-----MLF 231
S + + PD + +E RVLK G I P+ +
Sbjct: 137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDM 196
Query: 232 PKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRR 264
Y ++ G ++ +
Sbjct: 197 GSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSK 229
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 46.5 bits (109), Expect = 1e-06
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 25/178 (14%)
Query: 114 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
+D+G G G +L + + + + + + + + +
Sbjct: 34 TLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD 93
Query: 174 DYADRYVSAGSIEYWPDPQRG--IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLF 231
D +S + + I R K GG I+ + + + F
Sbjct: 94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF------PCTVGF 147
Query: 232 P---KEEEYIEWFQKAGFKDVQ-------LKRIGPKWYRGVRRHGLIMGCSVTGVKPA 279
P KE E ++ G+ ++ L R R R ++ K A
Sbjct: 148 PFAFKEGELRRYY--EGWDMLKYNEDVGELHRTDENGNRIKLRF-----ATMLARKTA 198
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 6/169 (3%)
Query: 76 FYRFLSIVYDHVINPGHWTEDMRDDALEPADLSN-RNMLVVDVGGGTGFTTLGIVKHVDA 134
Y + +YD +I + D +E +N +D+ GTG T +
Sbjct: 2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN 61
Query: 135 KNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDP--- 191
L Q A+ K + + ++ D +L + S Y D
Sbjct: 62 TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDL 121
Query: 192 QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240
++ + LK GG + + LS+ + + +E + W
Sbjct: 122 KKYFKAVSNHLKEGGVFIFD--INSYYKLSQVLGNNDFNYDDDEVFYYW 168
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 46.1 bits (108), Expect = 2e-06
Identities = 28/170 (16%), Positives = 46/170 (27%), Gaps = 14/170 (8%)
Query: 86 HVINPGHWTEDMRD-DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP 144
++ GH+ A L ++ V+D+G G G+ T + LD S
Sbjct: 59 AFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK 118
Query: 145 HQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKL 204
+ + + LPF D + + E RV+K
Sbjct: 119 VA--IKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKP 169
Query: 205 GGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254
GG P + + Q GF Q +
Sbjct: 170 GGWVITATPGPRHLMELK---GLIYNEVHLHAPHAE-QLEGFTLQQSAEL 215
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 45.4 bits (106), Expect = 4e-06
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 5/149 (3%)
Query: 108 SNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECKIVEGDA 166
+ +D G G G T ++ + +L+ H L +AK++ + K +
Sbjct: 91 GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASM 149
Query: 167 EDLPFPTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYF 224
E P + D V + Y D + + + L G
Sbjct: 150 ETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDK 209
Query: 225 ADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253
D + + Y F ++G + V+
Sbjct: 210 EDSSLTRS-DIHYKRLFNESGVRVVKEAF 237
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 45.5 bits (107), Expect = 4e-06
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 19/143 (13%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAE 167
++D G G+G + + V + V ++ A+ L + ++E
Sbjct: 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE--SNLTKWGLIERVTI 159
Query: 168 DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227
+ ++ D PDP I + + LK GG+ + P
Sbjct: 160 KVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT------------- 206
Query: 228 WMLFPKEEEYIEWFQKAGFKDVQ 250
+ +E ++ Q+ F ++
Sbjct: 207 ---TNQVQETLKKLQELPFIRIE 226
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.1 bits (105), Expect = 4e-06
Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 9/185 (4%)
Query: 76 FYRFLSIVYD----HVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKH 131
Y L+ YD I D ++ + V+D+ GTG TL + +
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKRE-VRRVLDLACGTGIPTLELAER 62
Query: 132 VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP-- 189
L + ++A+ K KE + + ++GD ++ F ++ + +I Y+
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE 122
Query: 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249
D ++ + LK GG P + F+ R VW EE+ + + V
Sbjct: 123 DLRKLFSKVAEALKPGGVFITDFPCW--FYGGRDGPVVWNEQKGEEKLVIMDWREVEPAV 180
Query: 250 QLKRI 254
Q R
Sbjct: 181 QKLRF 185
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 45.1 bits (106), Expect = 5e-06
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 13/135 (9%)
Query: 90 PGHWTEDMRDDA--LEPADLS--------NRNMLVVDVGGGTGFTTLGIVKHVDAK-NVT 138
P ++ +R + + D S M +++VG G+G + I+ ++ K +T
Sbjct: 55 PMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLT 114
Query: 139 ILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREA 198
++++ L KA L E + D+ + I PDP +++
Sbjct: 115 VVERDEDNLKKAMDN--LSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKI 172
Query: 199 YRVLKLGGKACIIGP 213
++K G A P
Sbjct: 173 ASMMKPGSVATFYLP 187
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 44.5 bits (104), Expect = 6e-06
Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 21/165 (12%)
Query: 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL 169
R ++++G G T + +H ++T ++ S A + + LK+ +
Sbjct: 20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEE--AISHAQGRLKDGITYIHSRFED 75
Query: 170 PFPTDYADRYVSAGSIEYWPDPQRGIRE-AYRVLKLGGKACIIGPVYPTFWLSRYFADVW 228
D V +E+ DP ++ L GG+ ++ P
Sbjct: 76 AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGI 135
Query: 229 MLFPKE----------------EEYIEWFQKAGFKDVQLKRIGPK 257
+ + +AG + I K
Sbjct: 136 ISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFK 180
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (105), Expect = 7e-06
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 9/140 (6%)
Query: 74 FWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD 133
F Y I + ++ T R+ ++ DL ++ +V+DVG GTG ++ KH
Sbjct: 4 FDSYDHYGIHEE-MLQDTVRTLSYRNAIIQNKDLF-KDKIVLDVGCGTGILSMFAAKHG- 60
Query: 134 AKNVTILDQSPHQLA---KAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGS---IEY 187
AK+V +D S + + ++ G ED+ P D +S + Y
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 188 WPDPQRGIREAYRVLKLGGK 207
+ L GG
Sbjct: 121 ESMMDTVLYARDHYLVEGGL 140
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 112 MLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK------EPLKECKIVEG 164
V++ G G+G TL +++ V V +Q A++ +P ++V
Sbjct: 98 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157
Query: 165 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213
D D P DR + P + R+L GG +
Sbjct: 158 DLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLMVYVA 201
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 10/184 (5%)
Query: 74 FWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD 133
F Y I + ++ TE RD + ++ +V+DVG GTG ++ K
Sbjct: 1 FSSYGHYGIHEE-MLKDKIRTESYRD-FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG- 57
Query: 134 AKNVTILDQSPHQLA---KAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
AK V +DQS + + +++G E++ P + D +S +
Sbjct: 58 AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLF 117
Query: 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250
Y K K + P T L + W GFK
Sbjct: 118 ESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKH----ADRIAFWDDVYGFKMSC 173
Query: 251 LKRI 254
+K+
Sbjct: 174 MKKA 177
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Score = 41.3 bits (95), Expect = 6e-05
Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 20/182 (10%)
Query: 93 WTEDMRDDALEPADLSNR---NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
W R L V++G GTG V K ++ S
Sbjct: 16 WFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRF------AVPLKIKIGVEPSERM--- 66
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209
+ + +++G AE+LP + D + +I + DP+R ++EAYR+LK GG
Sbjct: 67 -AEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI 125
Query: 210 IIGPVYPTFW-------LSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGV 262
+ +F + F EE ++ +KAGF++ ++ + K +
Sbjct: 126 VGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSEL 185
Query: 263 RR 264
Sbjct: 186 SE 187
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.3 bits (96), Expect = 8e-05
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 18/138 (13%)
Query: 84 YDHVINPGHWTEDMRD--------DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAK 135
Y H G E ++D +++ ++ +V+DVG GTG + K A+
Sbjct: 2 YAHF---GIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG-AR 57
Query: 136 NVTILDQSPHQLAK---AKQKEPLKECKIVEGDAEDLPFPTDYADR---YVSAGSIEYWP 189
V ++ S K + I++G E++ P + D + Y
Sbjct: 58 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 117
Query: 190 DPQRGIREAYRVLKLGGK 207
+ + L G
Sbjct: 118 MLNTVLHARDKWLAPDGL 135
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECKIVEGDAE 167
N V++ G G+G +L + K V ++ V + AK+ E
Sbjct: 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE 156
Query: 168 DLPFPTDYADRYVSAGSIEYW-----------PDPQRGIREAYRVLKLGGKACIIGP 213
+ P D+ + +S + + +P + Y LK GG +
Sbjct: 157 EWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV 213
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.2 bits (96), Expect = 1e-04
Identities = 12/89 (13%), Positives = 26/89 (29%)
Query: 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI 161
L + V+D+ G G + + ++L++ K +I
Sbjct: 35 LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQI 94
Query: 162 VEGDAEDLPFPTDYADRYVSAGSIEYWPD 190
++ D D ++ D D
Sbjct: 95 LKRDPYDWSTYSNLIDEERIFVPEVQSSD 123
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 38.6 bits (88), Expect = 5e-04
Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 37/213 (17%)
Query: 74 FWFYRFLSIVYDHVIN---PGHWTEDMRDDALEPADLSNR-NMLVVDVGGGTGFTTLGIV 129
F F ++ V+ +I PG+ ++ A+ + V D+G G TL
Sbjct: 1 FIFDENVAEVFPDMIQRSVPGY--SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSAR 58
Query: 130 KHVDAKNV--TILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFPTDYADRYVSAG 183
++++ NV +D S + + +Q +I+ D +
Sbjct: 59 RNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118
Query: 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPK---------- 233
D + + Y L G + + K
Sbjct: 119 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEV 178
Query: 234 ---------------EEEYIEWFQKAGFKDVQL 251
E + + GF V+L
Sbjct: 179 SQKRTALENVMRTDSIETHKVRLKNVGFSQVEL 211
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 38.2 bits (87), Expect = 7e-04
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 12/172 (6%)
Query: 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED 168
+ V+D+ G G + + + + + + A+ K + + GDA
Sbjct: 36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK 95
Query: 169 LPFPTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226
L F D + SI ++ + + +E RVLK GK + +
Sbjct: 96 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESL 155
Query: 227 VWM-------LFPKEEE---YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLI 268
V + P +EE IE+ + V+ G + +
Sbjct: 156 VVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFT 207
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 38.3 bits (88), Expect = 7e-04
Identities = 27/166 (16%), Positives = 45/166 (27%), Gaps = 22/166 (13%)
Query: 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 149
H T + AL V+D+G G+G + K +D P L +
Sbjct: 102 GHHETTRLALKALARHLRPGDK--VLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQ 157
Query: 150 AKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209
A+ + + + A Y L GG+A
Sbjct: 158 AEANAKRNGVRPRFLEGSLEAALPFGPFDLLVA--NLYAELHAALAPRYREALVPGGRAL 215
Query: 210 IIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255
+ G +L + E AGF+ ++ G
Sbjct: 216 LTG----------------ILKDRAPLVREAMAGAGFRPLEEAAEG 245
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 37.8 bits (86), Expect = 0.001
Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 23/215 (10%)
Query: 70 KKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIV 129
K ++ FY ++ YD + W R + V+D+GGGTG
Sbjct: 2 KLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGK----WS 57
Query: 130 KHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189
+ + ++ P + +E + + + + + Y
Sbjct: 58 LFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117
Query: 190 DPQRGIREAYRVLKLGGKACIIGPVYPTF-----------WLSRYFADVWMLFPKEEEYI 238
+ + E RVL G + TF ++R+
Sbjct: 118 NKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSF 177
Query: 239 EWFQ--------KAGFKDVQLKRIGPKWYRGVRRH 265
+ GF+ V ++ IG Y R
Sbjct: 178 NSYAFKPEDLDSLEGFETVDIRGIGVMEYPDERIS 212
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.93 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.92 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.91 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.91 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.87 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.87 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.86 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.85 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.85 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.85 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.84 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.84 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.83 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.83 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.83 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.82 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.82 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.81 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.79 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.78 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.77 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.77 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.76 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.76 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.76 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.75 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.75 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.75 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.72 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.72 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.71 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.7 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.69 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.69 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.67 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.65 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.64 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.63 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.62 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.61 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.6 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.59 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.58 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.57 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.57 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.56 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.53 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.53 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.48 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.47 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.46 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.46 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.4 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.39 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.36 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.33 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.27 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.24 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.21 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.19 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.14 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.13 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.08 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.07 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.05 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.0 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.96 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.94 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.9 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.87 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.84 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.79 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.76 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.74 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.74 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.71 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.69 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.68 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.65 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.63 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.62 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.61 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.55 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.55 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.54 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.52 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.46 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.46 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.45 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.4 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.28 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.25 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.17 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.08 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.92 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.92 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.76 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.5 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.43 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.43 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.43 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.34 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.24 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.18 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.16 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.13 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.1 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.04 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.92 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.85 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.85 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.83 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.52 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.41 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.38 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.28 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.17 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.09 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.76 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.56 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.33 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.3 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.21 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.2 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.9 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.85 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.72 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.71 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.51 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.48 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.14 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.36 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.25 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 93.14 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.09 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.03 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 92.46 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 91.79 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 91.55 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.49 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 90.21 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 90.12 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 89.83 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.78 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 88.93 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.59 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.35 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 88.19 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 88.14 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.89 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 87.19 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 86.85 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 86.74 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 86.19 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 86.1 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 85.6 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.62 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.24 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 84.14 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 83.05 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 82.31 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 81.11 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 80.84 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 80.27 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 80.02 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.93 E-value=2.1e-25 Score=192.90 Aligned_cols=150 Identities=25% Similarity=0.360 Sum_probs=122.5
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCCCCCCCccE
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADR 178 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~fD~ 178 (337)
++.+.+ +++++|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++. ..++++|+++|++++|+++++||+
T Consensus 8 l~~~~l-~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~ 84 (231)
T d1vl5a_ 8 MQIAAL-KGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHI 84 (231)
T ss_dssp HHHHTC-CSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEE
T ss_pred HHhcCC-CCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccccc
Confidence 444555 37899999999999999999988 679999999999999998763 346799999999999999999999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchh-Hhhhh-------hhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFW-LSRYF-------ADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
|++..+++|++|+.++++++.++|||||++++.+...+... ..... ...+..+++.+++.++|+++||++++
T Consensus 85 v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 164 (231)
T d1vl5a_ 85 VTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE 164 (231)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEE
T ss_pred ccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999865543221 11111 11122457889999999999999887
Q ss_pred EEEc
Q 019684 251 LKRI 254 (337)
Q Consensus 251 ~~~~ 254 (337)
+...
T Consensus 165 ~~~~ 168 (231)
T d1vl5a_ 165 LHCF 168 (231)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=1.1e-24 Score=189.07 Aligned_cols=151 Identities=21% Similarity=0.325 Sum_probs=123.9
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCcc
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYAD 177 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD 177 (337)
+++.+++ +++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.. ..++.++++|++++|+++++||
T Consensus 8 l~~~~~~-~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 84 (234)
T d1xxla_ 8 MIKTAEC-RAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFD 84 (234)
T ss_dssp HHHHHTC-CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEE
T ss_pred HHHHhCC-CCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccc
Confidence 4455555 48999999999999999999998 5799999999999999987743 2579999999999999999999
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCc-hhHhhhhh-------hhhccCCCHHHHHHHHHhCCCcEE
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPT-FWLSRYFA-------DVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+|++..+++|++|+..+++++.++|||||++++.+...+. .....+.. ..+....+..++.++++++||.+.
T Consensus 85 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~ 164 (234)
T d1xxla_ 85 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 164 (234)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred eeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCcee
Confidence 9999999999999999999999999999999997654432 22222211 122234678899999999999887
Q ss_pred EEEEc
Q 019684 250 QLKRI 254 (337)
Q Consensus 250 ~~~~~ 254 (337)
++...
T Consensus 165 ~~~~~ 169 (234)
T d1xxla_ 165 DIQKW 169 (234)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=7.3e-24 Score=180.29 Aligned_cols=136 Identities=25% Similarity=0.336 Sum_probs=113.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||||||+|.++..+. +++|+|+|+.+++.++++ ++.++++|++++++++++||+|++..+++|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~ 105 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----GVFVLKGTAENLPLKDESFDFALMVTTICFVD 105 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----cccccccccccccccccccccccccccccccc
Confidence 56689999999999987763 468999999999999974 68999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh-------hhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD-------VWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
|+..+++++.++|+|||.+++.++............. ....+++.+++.++|+++||+++++....
T Consensus 106 d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~~ 178 (208)
T d1vlma_ 106 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL 178 (208)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEEEe
Confidence 9999999999999999999999876654432221111 11235789999999999999998877643
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.91 E-value=1.1e-23 Score=187.70 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=125.6
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCC
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTD 174 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~ 174 (337)
..+.....+ +++.+|||||||+|.++..+++.+ +++|+|+|+|+.+++.|+++.. ..+++++++|++++|++++
T Consensus 57 ~~l~~~~~l-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~ 134 (282)
T d2o57a1 57 SELAMTGVL-QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDN 134 (282)
T ss_dssp HHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHhcCC-CCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccccccc
Confidence 333333444 488999999999999999999874 6899999999999999997632 3679999999999999999
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCch----hHhhhhhhh-hccCCCHHHHHHHHHhCCCcEE
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF----WLSRYFADV-WMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~v 249 (337)
+||+|++..+++|++++..+++++.++|||||++++.++..... ......... ...+.+.+++.++++++||+++
T Consensus 135 sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i 214 (282)
T d2o57a1 135 SYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTL 214 (282)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEE
T ss_pred ccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceE
Confidence 99999999999999999999999999999999999986543321 111111111 1235688999999999999999
Q ss_pred EEEEcCc
Q 019684 250 QLKRIGP 256 (337)
Q Consensus 250 ~~~~~~~ 256 (337)
.+.....
T Consensus 215 ~~~d~~~ 221 (282)
T d2o57a1 215 RTFSRPD 221 (282)
T ss_dssp EEEECHH
T ss_pred EEEECcH
Confidence 9887653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=3e-23 Score=181.07 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=128.2
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAE 167 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~~ 167 (337)
+.++.....+...+.+. ++++|||||||+|.++..+++.. +++|+|+|+|+.|++.|+++. ..++++|+++|+.
T Consensus 16 p~~~~~~~~l~~~~~l~-pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~ 93 (245)
T d1nkva_ 16 PFTEEKYATLGRVLRMK-PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA 93 (245)
T ss_dssp SCCHHHHHHHHHHTCCC-TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred CCCHHHHHHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh
Confidence 44666666667777764 89999999999999999999875 589999999999999998763 3356999999998
Q ss_pred CCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhh-----hhhccCCCHHHHHHHHH
Q 019684 168 DLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFA-----DVWMLFPKEEEYIEWFQ 242 (337)
Q Consensus 168 ~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~ 242 (337)
++ +.+++||+|++..+++|++|+..++++++++|||||++++.++............ ..+..+.+..++.+.++
T Consensus 94 ~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
T d1nkva_ 94 GY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFD 172 (245)
T ss_dssp TC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHH
T ss_pred hc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHH
Confidence 87 4678899999999999999999999999999999999999865322211111111 12223568899999999
Q ss_pred hCCCcEEEEEEcC
Q 019684 243 KAGFKDVQLKRIG 255 (337)
Q Consensus 243 ~aGF~~v~~~~~~ 255 (337)
++||+++......
T Consensus 173 ~aG~~~v~~~~~~ 185 (245)
T d1nkva_ 173 DLGYDVVEMVLAD 185 (245)
T ss_dssp TTTBCCCEEEECC
T ss_pred HcCCEEEEEEeCC
Confidence 9999988776654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.9e-22 Score=173.28 Aligned_cols=144 Identities=15% Similarity=0.054 Sum_probs=116.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++... .+++|+++|++++++++++||+|++..++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 467899999999999999887664 46899999999999999988653 35799999999998888999999999999
Q ss_pred cccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 186 EYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 186 ~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
+|+++++ +++++++++|||||.+++.+.......... .......++.+++.++++++||++++.....
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~ 207 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD--DVDSSVCRDLDVVRRIICSAGLSLLAEERQE 207 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE--TTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccc--cCCceeeCCHHHHHHHHHHcCCEEEEEEEeC
Confidence 9998764 799999999999999999865443211100 1111223578999999999999999887643
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.87 E-value=5.9e-22 Score=170.61 Aligned_cols=141 Identities=17% Similarity=0.142 Sum_probs=115.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++.. .++.++.+|+++.++ +++||+|++..+++|++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~-~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK-DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID 95 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC-SCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc-ccccccccccccccc-ccccccccccceeEecC
Confidence 5678999999999999999887 6799999999999999998865 579999999988765 56899999999999999
Q ss_pred CHHHHHHHHH-HhccCCCEEEEEcCCCCchhHhh----------------hhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 190 DPQRGIREAY-RVLKLGGKACIIGPVYPTFWLSR----------------YFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 190 ~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
|+..++.++. ++|+|||.+++..++........ .....+...++.+++.++++++||++++..
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 9999999998 79999999999876544322110 001112245789999999999999988866
Q ss_pred Ec
Q 019684 253 RI 254 (337)
Q Consensus 253 ~~ 254 (337)
.+
T Consensus 176 ~~ 177 (225)
T d2p7ia1 176 GI 177 (225)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.86 E-value=1e-21 Score=169.07 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=110.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~ 182 (337)
+++.+|||||||+|..+..+++.. |+.+|+|+|+|+.|++.|+++.. ..++.+..+|+.+.+ .+.+|+|++.
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~ 115 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILN 115 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEe
Confidence 478899999999999999998763 78999999999999999998632 245777788877655 4569999999
Q ss_pred ccccccC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhH-hhhhh------------------------hhhccCCCHH
Q 019684 183 GSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWL-SRYFA------------------------DVWMLFPKEE 235 (337)
Q Consensus 183 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~------------------------~~~~~~~~~~ 235 (337)
.+++|++ ++.+++++++++|||||.+++.+........ ..... ......++.+
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 195 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE 195 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence 9999985 6779999999999999999998765432110 00000 0111346889
Q ss_pred HHHHHHHhCCCcEEEEE
Q 019684 236 EYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~~ 252 (337)
++.++|+++||+.+++.
T Consensus 196 ~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 196 THKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCceEEe
Confidence 99999999999998874
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.85 E-value=3.1e-21 Score=171.54 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=114.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
.++.+|||||||+|.++..+++.+| +.+|+|+|+|+.+++.|+++... .+++|+++|+.++++++ +||+|++..++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~l 104 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAFL 104 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESCG
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccC-CceEEEEehhh
Confidence 4678999999999999999998876 57999999999999999987543 36899999999888754 69999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCCCCch------------------hHhhhhhhhhc-cC---CCHHHHHHHHHh
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPVYPTF------------------WLSRYFADVWM-LF---PKEEEYIEWFQK 243 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------------------~~~~~~~~~~~-~~---~~~~~~~~~l~~ 243 (337)
+|++|+..+++++.++|||||++++.++..... .....+..... .. .-..++..+|++
T Consensus 105 ~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~e 184 (281)
T d2gh1a1 105 LHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSE 184 (281)
T ss_dssp GGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999987542110 01111111111 11 112467889999
Q ss_pred CCCcEEEEEEcC
Q 019684 244 AGFKDVQLKRIG 255 (337)
Q Consensus 244 aGF~~v~~~~~~ 255 (337)
+||+++++....
T Consensus 185 aGf~~i~~~~~~ 196 (281)
T d2gh1a1 185 LGVKNIECRVSD 196 (281)
T ss_dssp TTCEEEEEEECC
T ss_pred cCCeEEEEEEec
Confidence 999999887653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=1.1e-21 Score=170.30 Aligned_cols=135 Identities=27% Similarity=0.395 Sum_probs=106.7
Q ss_pred hHHHhhhhhHhhhcccCCCcc--hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 019684 73 AFWFYRFLSIVYDHVINPGHW--TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 150 (337)
Q Consensus 73 ~~~~y~~~~~~y~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a 150 (337)
.+.||+.+++.|+.......+ ...+....+... .+++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|
T Consensus 5 ~~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a 80 (246)
T d2avna1 5 SWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEY--LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVA 80 (246)
T ss_dssp HHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHH--CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh--cCCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccc
Confidence 456788888888765442211 122222222222 236789999999999999999987 78999999999999999
Q ss_pred HhhCCCCCeEEEEcCCCCCCCCCCCccEEEec-ccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 151 KQKEPLKECKIVEGDAEDLPFPTDYADRYVSA-GSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 151 ~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~-~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+++... .++.+|++++++++++||+|++. .+++|++|+.++++++.++|||||.+++..+.
T Consensus 81 ~~~~~~---~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 81 REKGVK---NVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp HHHTCS---CEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cccccc---ccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 988542 36789999999999999999985 68999999999999999999999999987653
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.85 E-value=2.5e-21 Score=169.54 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=118.3
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCccE
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADR 178 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD~ 178 (337)
.+++.+.. .++.+|||+|||+|.++..++... ..+|+++|+|+.|++.|+++... ++++|+++|++++++++++||+
T Consensus 84 ~fl~~l~~-~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T d1xtpa_ 84 NFIASLPG-HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHhhCCC-CCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence 34444443 367899999999999999887663 45899999999999999988654 4589999999999888899999
Q ss_pred EEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 179 YVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 179 i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
|++..+++|++|++ ++++++.++|||||++++.+......... ........+++.+.+.++++++||++++...
T Consensus 162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~-~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL-VDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE-EETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcce-ecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 99999999998865 78999999999999999986543321000 0000111245889999999999999988765
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.84 E-value=4.9e-21 Score=166.90 Aligned_cols=132 Identities=21% Similarity=0.160 Sum_probs=100.4
Q ss_pred hhhhhHhhhcccCCCcchHHHHHHhccccC-CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC
Q 019684 77 YRFLSIVYDHVINPGHWTEDMRDDALEPAD-LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 155 (337)
Q Consensus 77 y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 155 (337)
|+.+++.|+..+............+..... ...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++..
T Consensus 3 y~~~A~~YD~l~~~~~~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~ 80 (246)
T d1y8ca_ 3 YNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFR 80 (246)
T ss_dssp HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhcccccc
Confidence 666788888766654222333333222221 1135689999999999999999998 7799999999999999998643
Q ss_pred --CCCeEEEEcCCCCCCCCCCCccEEEec-ccccccCCH---HHHHHHHHHhccCCCEEEEE
Q 019684 156 --LKECKIVEGDAEDLPFPTDYADRYVSA-GSIEYWPDP---QRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 156 --~~~~~~~~~d~~~~~~~~~~fD~i~~~-~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~ 211 (337)
..+++++++|+.++++. ++||+|+|. ++++|+.++ .+++++++++|||||.+++.
T Consensus 81 ~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 81 SQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCccceeeccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 34699999999887764 579999985 678887654 46999999999999999874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.84 E-value=2.6e-20 Score=163.02 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=116.1
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCc
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f 176 (337)
++...++. +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. ..+++++.+|+.+. .+ .+|
T Consensus 72 ~~~~~d~~-~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~-~~~ 147 (253)
T d1tw3a2 72 PAAAYDWT-NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP-RKA 147 (253)
T ss_dssp HHHHSCCT-TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-SCE
T ss_pred HHhhcCCc-cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-cc-cch
Confidence 34444443 668999999999999999999999999999998 678888876532 35799999998652 22 469
Q ss_pred cEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCchh----Hhhhh-----hhhhccCCCHHHHHHHHHhCC
Q 019684 177 DRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTFW----LSRYF-----ADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~l~~aG 245 (337)
|+|++.+++||+++.+ ++|++++++|||||++++.+....... ....+ ....-..++.+++.++|+++|
T Consensus 148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AG 227 (253)
T d1tw3a2 148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAG 227 (253)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTT
T ss_pred hheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCC
Confidence 9999999999998774 789999999999999999875432211 11111 111113468999999999999
Q ss_pred CcEEEEEEcC
Q 019684 246 FKDVQLKRIG 255 (337)
Q Consensus 246 F~~v~~~~~~ 255 (337)
|+++++..+.
T Consensus 228 f~~~~v~~~~ 237 (253)
T d1tw3a2 228 LVVEEVRQLP 237 (253)
T ss_dssp EEEEEEEEEE
T ss_pred CeEEEEEECC
Confidence 9999988765
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=1.1e-20 Score=167.90 Aligned_cols=161 Identities=22% Similarity=0.213 Sum_probs=124.4
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~ 172 (337)
..+.+++.+.+. +|.+|||||||.|.++..+++.+ +++|+|+++|+++++.++++.. ...+.+...|.. +.
T Consensus 49 k~~~~~~~l~l~-~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~ 123 (291)
T d1kpia_ 49 KRKLALDKLNLE-PGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EF 123 (291)
T ss_dssp HHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GC
T ss_pred HHHHHHHhcCCC-CCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---cc
Confidence 355566777764 89999999999999999999886 5899999999999999887632 245777777753 44
Q ss_pred CCCccEEEecccccccCC---------HHHHHHHHHHhccCCCEEEEEcCCCCchhHh---------------hhhhhh-
Q 019684 173 TDYADRYVSAGSIEYWPD---------PQRGIREAYRVLKLGGKACIIGPVYPTFWLS---------------RYFADV- 227 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~---------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------~~~~~~- 227 (337)
+++||.|+|..+++|+.+ .+.+++++.++|||||++++.....+..... .++...
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyi 203 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 203 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHh
Confidence 678999999999999976 4789999999999999999976654432111 011111
Q ss_pred --hccCCCHHHHHHHHHhCCCcEEEEEEcCccccccc
Q 019684 228 --WMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGV 262 (337)
Q Consensus 228 --~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~ 262 (337)
.-.+++..++...++++||++++...++.++.+..
T Consensus 204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL 240 (291)
T d1kpia_ 204 FPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTL 240 (291)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHH
T ss_pred cCCCCCCCHHHHHhhhcccccccceeeeccccHHHHH
Confidence 11356889999999999999999999987655443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=3.4e-21 Score=168.11 Aligned_cols=99 Identities=24% Similarity=0.301 Sum_probs=86.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEec-cccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSA-GSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~-~~l~ 186 (337)
+.++|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++... .++++.++|++++++++ +||+|++. .+++
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~-~fD~I~~~~~~~~ 117 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN-EFDAVTMFFSTIM 117 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS-CEEEEEECSSGGG
T ss_pred CCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhccccc-ccchHhhhhhhhh
Confidence 6689999999999999999997 78999999999999999987542 36899999999998775 79999986 5667
Q ss_pred ccC--CHHHHHHHHHHhccCCCEEEEE
Q 019684 187 YWP--DPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 187 ~~~--~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
|+. +..++|++++++|||||++++.
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 763 4568999999999999999885
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=7.4e-20 Score=162.06 Aligned_cols=160 Identities=22% Similarity=0.208 Sum_probs=124.4
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~ 172 (337)
..+.+++.+.+ ++|.+|||||||.|..++.+++.+ +++|+|+++|+++++.|+++.. ..++++..+|..+++
T Consensus 50 k~~~~~~~l~l-~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 125 (285)
T d1kpga_ 50 KIDLALGKLGL-QPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 125 (285)
T ss_dssp HHHHHHTTTTC-CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHcCC-CCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--
Confidence 34566777776 489999999999999999999987 6899999999999999987632 256889999987764
Q ss_pred CCCccEEEecccccccC--CHHHHHHHHHHhccCCCEEEEEcCCCCchh------------Hh---hhhhhh---hccCC
Q 019684 173 TDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFW------------LS---RYFADV---WMLFP 232 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------------~~---~~~~~~---~~~~~ 232 (337)
++||.|++..+++|+. +...+++++.++|||||++++.+....... .. .++... .-..+
T Consensus 126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP 204 (285)
T d1kpga_ 126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 204 (285)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence 6799999999999995 558999999999999999998654321110 00 011111 01246
Q ss_pred CHHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 233 KEEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 233 ~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
+..++.++++++||+++++..++..+.+.
T Consensus 205 sl~~~~~~~e~agf~v~~~~~~~~hYarT 233 (285)
T d1kpga_ 205 SIPMVQECASANGFTVTRVQSLQPHYAKT 233 (285)
T ss_dssp CHHHHHHHHHTTTCEEEEEEECHHHHHHH
T ss_pred ChhhHHHHHHHhchhhcccccchhhHHHH
Confidence 88999999999999999999987654433
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=1.8e-20 Score=165.97 Aligned_cols=158 Identities=22% Similarity=0.270 Sum_probs=120.8
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPFP 172 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~ 172 (337)
..+.+++.+.+. ++.+|||||||+|.++..+++.. +++|+|+|+|+++++.|+++... .++.+...|..++
T Consensus 40 k~~~~~~~l~l~-~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--- 114 (280)
T d2fk8a1 40 KVDLNLDKLDLK-PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--- 114 (280)
T ss_dssp HHHHHHTTSCCC-TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---
T ss_pred HHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---
Confidence 345566777664 89999999999999999988875 67999999999999999987432 3467777776654
Q ss_pred CCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHh---------------hhhhhh---hccCC
Q 019684 173 TDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLS---------------RYFADV---WMLFP 232 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------~~~~~~---~~~~~ 232 (337)
+++||.|++..+++|+.+. ..+++++.++|||||++++.+......... .+.... .-..+
T Consensus 115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP 194 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 194 (280)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc
Confidence 3679999999999999654 789999999999999999875433221100 111111 01357
Q ss_pred CHHHHHHHHHhCCCcEEEEEEcCcccc
Q 019684 233 KEEEYIEWFQKAGFKDVQLKRIGPKWY 259 (337)
Q Consensus 233 ~~~~~~~~l~~aGF~~v~~~~~~~~~~ 259 (337)
+.+++.+.++++||+++++..++.++.
T Consensus 195 S~~~l~~~~e~aGf~v~~~~~~~~hYa 221 (280)
T d2fk8a1 195 STEMMVEHGEKAGFTVPEPLSLRPHYI 221 (280)
T ss_dssp CHHHHHHHHHHTTCBCCCCEECHHHHH
T ss_pred chHhhhhhHHhhccccceeeecccCHH
Confidence 899999999999999999998875543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=3.9e-20 Score=158.39 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++..+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.. ..++.++.+|+.++++++++||+|++..+++
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 36789999999999999999987 7899999999999999997642 2457889999999999999999999999999
Q ss_pred ccC--CHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 187 YWP--DPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 187 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|++ +..++++++.++|||||++++....
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 997 5568999999999999999887543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.81 E-value=3.4e-19 Score=155.98 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=116.3
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCCCCCCCCCCCc
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~f 176 (337)
+++..++. +..+|||||||+|.++..+++.+|+.+++++|+ +++++.++++. ...++.++.+|+.+ +.+. +|
T Consensus 73 ~~~~~d~~-~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~-~~ 148 (256)
T d1qzza2 73 PADAYDWS-AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TA 148 (256)
T ss_dssp HHHTSCCT-TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CE
T ss_pred HHhcCCCc-cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cccc-cc
Confidence 34444443 668999999999999999999999999999998 78888887653 23569999999865 3333 59
Q ss_pred cEEEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCch-----hHhhhhh-----hhhccCCCHHHHHHHHHhC
Q 019684 177 DRYVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPTF-----WLSRYFA-----DVWMLFPKEEEYIEWFQKA 244 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~l~~a 244 (337)
|+|++.+++|++++.+ ++|++++++|||||+++|.+...... .....+. ...-..+|.++|.++|+++
T Consensus 149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~A 228 (256)
T d1qzza2 149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA 228 (256)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHC
Confidence 9999999999998764 68999999999999999987643211 1111111 0011236899999999999
Q ss_pred CCcEEEEEEcCc
Q 019684 245 GFKDVQLKRIGP 256 (337)
Q Consensus 245 GF~~v~~~~~~~ 256 (337)
||+++++...+.
T Consensus 229 Gf~~~~~~~~~~ 240 (256)
T d1qzza2 229 GLALASERTSGS 240 (256)
T ss_dssp TEEEEEEEEECC
T ss_pred CCceeEEEEeCC
Confidence 999999988763
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.79 E-value=1.2e-18 Score=146.70 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=102.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|||||||+|..+..++++ +.+|+|+|+|+.+++.++++.. -.++.+...|+.++++ +++||+|++..+++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMM 106 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred CCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeee
Confidence 3469999999999999999998 7899999999999999886642 2568999999988765 56799999999999
Q ss_pred ccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 187 YWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 187 ~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
|+++. .++++++.++|+|||++++............ .......+..++.+.+ +||+++...
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~---~~~~~~~~~~el~~~~--~~~~i~~~~ 169 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCT---VGFPFAFKEGELRRYY--EGWDMLKYN 169 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC------------CCCCBCTTHHHHHT--TTSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCC---CCCCCccCHHHHHHHh--CCCeEEEee
Confidence 99755 4799999999999999998765432211111 0111234556777777 589887654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.78 E-value=1.1e-18 Score=149.91 Aligned_cols=146 Identities=18% Similarity=0.129 Sum_probs=114.5
Q ss_pred cccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCC-CCCCCCccEEE
Q 019684 103 EPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDL-PFPTDYADRYV 180 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~-~~~~~~fD~i~ 180 (337)
+.+++ +++.+|||+|||+|..+..+++..|+..|+|+|+|+.|++.+++++.. +++.++..|.... ++.+..+|+++
T Consensus 68 ~~l~i-kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 68 KVMPI-KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCCCC-CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred HhCCC-CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEE
Confidence 34445 489999999999999999999998889999999999999999988654 6788888888654 35566788888
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
+...+++..+...++.++.+.|||||.+++............. . ...++..+.|+++||++++..++.+
T Consensus 147 i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~-~------~~~~e~~~~L~~aGF~ive~idL~p 215 (230)
T d1g8sa_ 147 IYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP-K------EIFKEQKEILEAGGFKIVDEVDIEP 215 (230)
T ss_dssp EEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH-H------HHHHHHHHHHHHHTEEEEEEEECTT
T ss_pred eeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH-H------HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888888888899999999999999999887432110000000 0 0135678899999999999988764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=6.9e-20 Score=160.26 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=107.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCe-----------------------------
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC----------------------------- 159 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------------------- 159 (337)
.++.+|||||||+|.++..++.. ...+|+|+|+|+.+++.|++++.....
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 36789999999999998777766 245799999999999999976432111
Q ss_pred ----EEEEcCC----CCCCCCCCCccEEEecccccccC----CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhh
Q 019684 160 ----KIVEGDA----EDLPFPTDYADRYVSAGSIEYWP----DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADV 227 (337)
Q Consensus 160 ----~~~~~d~----~~~~~~~~~fD~i~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 227 (337)
.....+. ...++.+++||+|++.++++|+. +...+++++.++|||||++++.+........ ......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~-~~~~~~ 207 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM-VGKREF 207 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-ETTEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce-eccccc
Confidence 1122222 22356778999999999999995 4557999999999999999998765432110 111111
Q ss_pred hccCCCHHHHHHHHHhCCCcEEEEEEcCccc
Q 019684 228 WMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (337)
Q Consensus 228 ~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 258 (337)
...+++.+++.++|++|||+++++......+
T Consensus 208 ~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~ 238 (257)
T d2a14a1 208 SCVALEKGEVEQAVLDAGFDIEQLLHSPQSY 238 (257)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEECCCC
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEEEecccc
Confidence 2245789999999999999999987765443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.77 E-value=3.3e-19 Score=155.76 Aligned_cols=147 Identities=17% Similarity=0.097 Sum_probs=110.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCC-CCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF-PTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~-~~~~fD~i~~~~ 183 (337)
+++.+|||||||+|..+..+++. +..+|+|+|+|+.|++.|+++.. ..++.|.++|+...++ .+++||+|++..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 47899999999999999998887 34689999999999999997642 2368999999976654 467899999999
Q ss_pred cccccCC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhh----------------------------------hhh
Q 019684 184 SIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSR----------------------------------YFA 225 (337)
Q Consensus 184 ~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------------------------~~~ 225 (337)
++||+.+ ...+++++.++|||||++++..+......... ...
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 181 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 181 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEEcccccc
Confidence 9999843 24799999999999999988644321100000 000
Q ss_pred hhhccCCCHHHHHHHHHhCCCcEEEEEEcCc
Q 019684 226 DVWMLFPKEEEYIEWFQKAGFKDVQLKRIGP 256 (337)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 256 (337)
+....+.+.+.+.++++++||+.++...+..
T Consensus 182 ~~~E~l~~~~~l~~~~~~~g~~lv~~~~f~~ 212 (252)
T d1ri5a_ 182 NCIEYFVDFTRMVDGFKRLGLSLVERKGFID 212 (252)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEHHH
T ss_pred cCcccccCHHHHHHHHHHcCCEEEEEecHHH
Confidence 0011234578999999999999998877653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.4e-18 Score=145.82 Aligned_cols=136 Identities=13% Similarity=-0.018 Sum_probs=106.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--------------------CCeEEEEcCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECKIVEGDAED 168 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------~~~~~~~~d~~~ 168 (337)
+++.+|||+|||+|..+..|++. |.+|+|+|+|+.+++.++++... .++++.++|+.+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 37889999999999999999998 89999999999999999876431 368899999977
Q ss_pred CC-CCCCCccEEEecccccccC--CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC
Q 019684 169 LP-FPTDYADRYVSAGSIEYWP--DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 169 ~~-~~~~~fD~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 245 (337)
++ ...+.||+|+...+++|++ +....++++.++|||||++++........... ......+.+++.+++.. +
T Consensus 122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~-----gpp~~~~~~el~~lf~~-~ 195 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP-----GPPFYVPHAEIERLFGK-I 195 (229)
T ss_dssp GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC-----CSSCCCCHHHHHHHHTT-T
T ss_pred ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC-----CCCCCCCHHHHHHHhcC-C
Confidence 64 5667899999999999995 44689999999999999988875543321100 00124578899999965 6
Q ss_pred CcEEEEE
Q 019684 246 FKDVQLK 252 (337)
Q Consensus 246 F~~v~~~ 252 (337)
|.+..++
T Consensus 196 ~~i~~le 202 (229)
T d2bzga1 196 CNIRCLE 202 (229)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 7664443
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=7.2e-19 Score=154.24 Aligned_cols=169 Identities=20% Similarity=0.229 Sum_probs=137.9
Q ss_pred chHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeC
Q 019684 63 QPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 142 (337)
Q Consensus 63 ~~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~ 142 (337)
...+.+|..+..+||+....+...+++|++.++.+++..+.... ..+.+|||+|||+|..++.++...|..+|+++|+
T Consensus 63 ~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDi 140 (274)
T d2b3ta1 63 DGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDR 140 (274)
T ss_dssp TTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECS
T ss_pred cCcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhc--ccccceeeeehhhhHHHHHHHhhCCcceeeeccc
Confidence 45678999999999999999999999999999999998877654 3578999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCC---CCCeEEEEcCCCCCCCCCCCccEEEeccc-------------ccccCC------------HHHH
Q 019684 143 SPHQLAKAKQKEP---LKECKIVEGDAEDLPFPTDYADRYVSAGS-------------IEYWPD------------PQRG 194 (337)
Q Consensus 143 s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~i~~~~~-------------l~~~~~------------~~~~ 194 (337)
|+.+++.|++|+. ..++.++++|+.+ +..+++||+|+++-- +.|.+. ..++
T Consensus 141 s~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i 219 (274)
T d2b3ta1 141 MPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHI 219 (274)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHH
T ss_pred hhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHH
Confidence 9999999998853 2469999999866 455678999999522 222221 2368
Q ss_pred HHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 195 IREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 195 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
+.++.++|+|||.+++.-.. ...+.+.++++++||..+++
T Consensus 220 ~~~a~~~L~~~G~l~lEig~-----------------~q~~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 220 IEQSRNALVSGGFLLLEHGW-----------------QQGEAVRQAFILAGYHDVET 259 (274)
T ss_dssp HHHHGGGEEEEEEEEEECCS-----------------SCHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHhcCCCCEEEEEECc-----------------hHHHHHHHHHHHCCCCeEEE
Confidence 89999999999999885321 13467889999999986554
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.3e-18 Score=152.56 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=109.1
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhh----CCC--CeEEEEeCCHHHHHHHHhhCCC----CCeE--EEEcCCCC
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKH----VDA--KNVTILDQSPHQLAKAKQKEPL----KECK--IVEGDAED 168 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~----~~~--~~v~gvD~s~~~~~~a~~~~~~----~~~~--~~~~d~~~ 168 (337)
++......++..+|||||||+|.++..++.. +++ .+++|+|+|+.|++.++++... .++. +...++++
T Consensus 31 ~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 110 (280)
T d1jqea_ 31 IIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSE 110 (280)
T ss_dssp HTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHH
T ss_pred HHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 3443333334558999999999998777653 333 4689999999999999987432 2333 34443322
Q ss_pred ------CCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhh--h-----hhhhccCCCHH
Q 019684 169 ------LPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRY--F-----ADVWMLFPKEE 235 (337)
Q Consensus 169 ------~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~-----~~~~~~~~~~~ 235 (337)
.+..+++||+|++.++++|++|+..++++++++|+|||.+++........+...+ + ...+..+.+.+
T Consensus 111 ~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 190 (280)
T d1jqea_ 111 YQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSD 190 (280)
T ss_dssp HHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHH
T ss_pred hcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHH
Confidence 2456789999999999999999999999999999999999988765544332211 1 11122457889
Q ss_pred HHHHHHHhCCCcEEEEE
Q 019684 236 EYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 236 ~~~~~l~~aGF~~v~~~ 252 (337)
++.++|++.||..+...
T Consensus 191 ~~~~~L~~~G~~~~~~~ 207 (280)
T d1jqea_ 191 DLTQMLDNLGLKYECYD 207 (280)
T ss_dssp HHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHCCCceEEEe
Confidence 99999999999865443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.75 E-value=1.2e-18 Score=145.71 Aligned_cols=138 Identities=9% Similarity=-0.029 Sum_probs=105.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---------------CCeEEEEcCCCCCC-CC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------------KECKIVEGDAEDLP-FP 172 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------------~~~~~~~~d~~~~~-~~ 172 (337)
+++.+|||+|||+|..+..|+++ |.+|+|+|+|+.|++.|+++... .+++++.+|+.+++ ..
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 48899999999999999999998 89999999999999999987542 23578889998776 34
Q ss_pred CCCccEEEecccccccCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEE
Q 019684 173 TDYADRYVSAGSIEYWPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQ 250 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 250 (337)
...||+|++..+++|+++ ....++++.++|||||++++........... ......+.+++.++++ .+|++..
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~-----~p~~~~~~~el~~l~~-~~~~i~~ 170 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE-----GPPFSVPQTWLHRVMS-GNWEVTK 170 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS-----SCCCCCCHHHHHHTSC-SSEEEEE
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCC-----CccccCCHHHHHHHhC-CCcEEEE
Confidence 467999999999999975 4689999999999999988765433221110 0012346777877764 6777655
Q ss_pred EEEc
Q 019684 251 LKRI 254 (337)
Q Consensus 251 ~~~~ 254 (337)
+...
T Consensus 171 ~~~~ 174 (201)
T d1pjza_ 171 VGGQ 174 (201)
T ss_dssp EEES
T ss_pred EEEe
Confidence 5544
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3.8e-18 Score=150.27 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
.++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.|+++. +++.++++|+.++|+++++||+|++.++++|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSBCTTCEEEEEEESCCCC-
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc--ccccceeeehhhccCCCCCEEEEeecCCHHH-
Confidence 4678999999999999999999988999999999999999999875 5789999999999999999999999988876
Q ss_pred CCHHHHHHHHHHhccCCCEEEEEcCCCCc
Q 019684 189 PDPQRGIREAYRVLKLGGKACIIGPVYPT 217 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 217 (337)
++++.|+|||||++++..+....
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred ------HHHHHHHhCCCcEEEEEeeCCcc
Confidence 47899999999999999876543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.4e-18 Score=152.65 Aligned_cols=144 Identities=20% Similarity=0.175 Sum_probs=104.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCC-------------------------------
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE------------------------------- 158 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------------------------- 158 (337)
++.+|||||||+|.+....+... ..+|+|+|+|+.|++.+++......
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 67899999999998875555442 4589999999999999987543211
Q ss_pred --eEEEEcCCCC------CCCCCCCccEEEecccccccC----CHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh
Q 019684 159 --CKIVEGDAED------LPFPTDYADRYVSAGSIEYWP----DPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226 (337)
Q Consensus 159 --~~~~~~d~~~------~~~~~~~fD~i~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 226 (337)
......|+.. .+...++||+|++.++++|+. +..++++++.++|||||.|++.+......... ....
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~-~~~~ 211 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA-GEAR 211 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE-TTEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccccc-CCcc
Confidence 1234456632 224456899999999999985 35689999999999999999986543321110 0011
Q ss_pred hhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 227 VWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 227 ~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
......+.+++.++|+++||++++.+...
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v~~~~~~~ 240 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKVRDLRTYI 240 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 12245799999999999999998876553
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=5.3e-18 Score=147.45 Aligned_cols=125 Identities=22% Similarity=0.225 Sum_probs=100.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
.++++|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|+.. .+++++++|+.+ .+++++||+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence 47899999999999999988876 68999999999999999987543 346788888765 35567899999875444
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
....+++++.++|||||++++++.... ..+.+.+.++++||++++....+
T Consensus 196 ---~l~~l~~~~~~~LkpGG~lilSgil~~----------------~~~~v~~~~~~~Gf~~~~~~~~~ 245 (254)
T d2nxca1 196 ---LHAALAPRYREALVPGGRALLTGILKD----------------RAPLVREAMAGAGFRPLEEAAEG 245 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHHTTCEEEEEEEET
T ss_pred ---cHHHHHHHHHHhcCCCcEEEEEecchh----------------hHHHHHHHHHHCCCEEEEEEEEC
Confidence 345788999999999999998754211 35678899999999998877654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.1e-18 Score=150.23 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=106.1
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCC--
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAED-- 168 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~-- 168 (337)
|...+.+.+..... .++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++... .++.++..|+..
T Consensus 38 w~~~~~~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 114 (229)
T d1zx0a1 38 WETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 114 (229)
T ss_dssp GGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHHHhhc--cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccc
Confidence 44444443333332 378899999999999999998873 46899999999999999988643 346777777643
Q ss_pred CCCCCCCccEEE-----ecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhcc--CCCHHHHHHHH
Q 019684 169 LPFPTDYADRYV-----SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWML--FPKEEEYIEWF 241 (337)
Q Consensus 169 ~~~~~~~fD~i~-----~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 241 (337)
.++++++||.|+ +...++|+.++..++++++|+|||||+|++.+.... .......+.. ....+.+...|
T Consensus 115 ~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l 190 (229)
T d1zx0a1 115 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW----GELMKSKYSDITIMFEETQVPAL 190 (229)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH----HHHTTTTCSCHHHHHHHHTHHHH
T ss_pred cccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCc----chhhhhhhhhcchhhhhHHHHHH
Confidence 346678888887 577888888999999999999999999987532111 1110000000 00134566788
Q ss_pred HhCCCcEEEEE
Q 019684 242 QKAGFKDVQLK 252 (337)
Q Consensus 242 ~~aGF~~v~~~ 252 (337)
.++||+..++.
T Consensus 191 ~~agF~~~~i~ 201 (229)
T d1zx0a1 191 LEAGFRRENIR 201 (229)
T ss_dssp HHTTCCGGGEE
T ss_pred HHCCCeeEEEE
Confidence 89999755443
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=1.2e-17 Score=138.93 Aligned_cols=136 Identities=26% Similarity=0.325 Sum_probs=110.6
Q ss_pred CCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcC
Q 019684 90 PGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGD 165 (337)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d 165 (337)
|++..++++..++..+... ++++|||+|||+|.++..+++. ..+|+++|+++.+++.|++++. ..+++++++|
T Consensus 14 ~~~t~~eir~~il~~l~~~-~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gd 90 (186)
T d1l3ia_ 14 PGPTAMEVRCLIMCLAEPG-KNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90 (186)
T ss_dssp CCCCCHHHHHHHHHHHCCC-TTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC
T ss_pred CCCChHHHHHHHHHhcCCC-CCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECc
Confidence 4566788888888887764 8999999999999999999887 5799999999999999998743 2579999999
Q ss_pred CCCCCCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCC
Q 019684 166 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAG 245 (337)
Q Consensus 166 ~~~~~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 245 (337)
+.+.+.....||.|++....+ +...+++.+.+.|||||++++...... +...+.+.+++.|
T Consensus 91 a~~~~~~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~~e----------------~~~~~~~~l~~~~ 151 (186)
T d1l3ia_ 91 APEALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILLE----------------TKFEAMECLRDLG 151 (186)
T ss_dssp HHHHHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH----------------HHHHHHHHHHHTT
T ss_pred hhhcccccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEeeccc----------------cHHHHHHHHHHcC
Confidence 987777778899999887654 456799999999999999988654221 2344667888888
Q ss_pred Cc
Q 019684 246 FK 247 (337)
Q Consensus 246 F~ 247 (337)
|.
T Consensus 152 ~~ 153 (186)
T d1l3ia_ 152 FD 153 (186)
T ss_dssp CC
T ss_pred CC
Confidence 85
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=1.9e-17 Score=144.17 Aligned_cols=137 Identities=19% Similarity=0.236 Sum_probs=110.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC------CCCeEEEEcCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP------LKECKIVEGDAEDL 169 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~ 169 (337)
-...++..+.+. +|++|||+|||+|.++..|++.. |..+|+++|+++++++.|+++.. ..++.++++|+.+.
T Consensus 84 D~s~Ii~~l~i~-PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 84 DAAQIVHEGDIF-PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHhCCC-CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 344455566664 89999999999999999999884 67899999999999999998632 36899999999888
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHH-HhCCCcE
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWF-QKAGFKD 248 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGF~~ 248 (337)
++++++||.|++ +++++..++.++.++|||||++++..++... .+...+.| ++.||..
T Consensus 163 ~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q----------------v~~~~~~l~~~~~f~~ 221 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ----------------LSRIVEALRAKQCWTE 221 (264)
T ss_dssp CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHH----------------HHHHHHHHHHHSSBCC
T ss_pred cccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccCh----------------HHHHHHHHHHcCCeec
Confidence 888999999985 6899999999999999999999988765432 23334445 4678988
Q ss_pred EEEEEcC
Q 019684 249 VQLKRIG 255 (337)
Q Consensus 249 v~~~~~~ 255 (337)
++..++-
T Consensus 222 i~~~E~l 228 (264)
T d1i9ga_ 222 PRAWETL 228 (264)
T ss_dssp CEEECCC
T ss_pred ceEEEEE
Confidence 7766554
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.69 E-value=2.7e-17 Score=139.12 Aligned_cols=141 Identities=16% Similarity=0.028 Sum_probs=102.1
Q ss_pred cCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCCCCccEEE-ec
Q 019684 105 ADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYADRYV-SA 182 (337)
Q Consensus 105 ~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~fD~i~-~~ 182 (337)
+++ +++.+|||+|||+|..+..+++..|..+|+|+|+|+.+++.+++++. ..|+.++..|+...+.....+|.+. +.
T Consensus 52 l~l-kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LKL-RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CCC-CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCC-CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 444 58999999999999999999999888899999999999999987753 3689999999987654444444442 22
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcCCCC---chhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcc
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYP---TFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPK 257 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 257 (337)
..+.|..+...+++++.++|||||++++...... ....... .......+ ++||++++...+.+.
T Consensus 131 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~----------~~~~~~~l-~~gf~i~E~i~L~P~ 197 (209)
T d1nt2a_ 131 QDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEV----------FKSVLKEM-EGDFKIVKHGSLMPY 197 (209)
T ss_dssp ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHH----------HHHHHHHH-HTTSEEEEEEECTTT
T ss_pred ecccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHH----------HHHHHHHH-HcCCEEEEEEccCCC
Confidence 4566777788999999999999999988742100 0000000 11222333 479999998887643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.69 E-value=4e-17 Score=141.18 Aligned_cols=131 Identities=18% Similarity=0.306 Sum_probs=104.6
Q ss_pred hccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCC
Q 019684 101 ALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 101 ~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~ 175 (337)
++..+.+. +|++|||+|||+|.++..+++.. |..+|+++|.++++++.|+++.. ..++++..+|+.+. ++++.
T Consensus 77 Ii~~l~i~-pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~ 154 (250)
T d1yb2a1 77 IIMRCGLR-PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM 154 (250)
T ss_dssp ----CCCC-TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred HHHHcCCC-CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence 35555554 89999999999999999999874 67899999999999999998743 35799999999774 45678
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
||.|++ +++++..+++++.++|||||++++..++... .+...+.|+++||..+++.++
T Consensus 155 fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Q----------------v~~~~~~l~~~gf~~i~~~E~ 212 (250)
T d1yb2a1 155 YDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQ----------------SEKTVLSLSASGMHHLETVEL 212 (250)
T ss_dssp EEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHH----------------HHHHHHHSGGGTEEEEEEEEE
T ss_pred eeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCcCh----------------HHHHHHHHHHCCCceeEEEEE
Confidence 999985 5788999999999999999999987664211 244567788899998877654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.67 E-value=7e-17 Score=139.67 Aligned_cols=149 Identities=21% Similarity=0.233 Sum_probs=110.4
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccE
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR 178 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 178 (337)
..+++..+......+|||||||+|.++..+++++|+.+++..|+ |..++. .....+++++.+|+.+ +.+ ..|+
T Consensus 70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~---~~~~~ri~~~~gd~~~-~~p--~~D~ 142 (244)
T d1fp1d2 70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN---APPLSGIEHVGGDMFA-SVP--QGDA 142 (244)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT---CCCCTTEEEEECCTTT-CCC--CEEE
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc---cCCCCCeEEecCCccc-ccc--cceE
Confidence 33444444334668999999999999999999999999999999 555432 2334689999999865 333 3599
Q ss_pred EEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCc----hhH---hhhhh-----hhhccCCCHHHHHHHHHhC
Q 019684 179 YVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPT----FWL---SRYFA-----DVWMLFPKEEEYIEWFQKA 244 (337)
Q Consensus 179 i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~----~~~---~~~~~-----~~~~~~~~~~~~~~~l~~a 244 (337)
+++.+++|+++|.+ ++|+++++.|+|||+++|.+...+. ... ...+. ...-.-+|.++|.++|++|
T Consensus 143 ~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~A 222 (244)
T d1fp1d2 143 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLS 222 (244)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred EEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHc
Confidence 99999999998865 7899999999999999998754321 111 11111 0111235799999999999
Q ss_pred CCcEEEEEEc
Q 019684 245 GFKDVQLKRI 254 (337)
Q Consensus 245 GF~~v~~~~~ 254 (337)
||+.+++...
T Consensus 223 GF~~v~v~~~ 232 (244)
T d1fp1d2 223 GFSKFQVACR 232 (244)
T ss_dssp TCSEEEEEEE
T ss_pred CCCceEEEec
Confidence 9999988654
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=1.7e-16 Score=138.83 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=108.4
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPF 171 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~ 171 (337)
-...++..+.+. ++.+|||+|||+|.++..+++.. |+++|+++|+++++++.|+++.. ..++.+...|+.. .+
T Consensus 91 d~~~Ii~~l~i~-pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~ 168 (266)
T d1o54a_ 91 DSSFIAMMLDVK-EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GF 168 (266)
T ss_dssp HHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CC
T ss_pred HHHHHHHhhCCC-CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cc
Confidence 344456666664 89999999999999999999875 67899999999999999998743 2457788888644 34
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
....||.|+ .+++++..+++++.++|||||++++..++.. ..++..+.|+++||.++++
T Consensus 169 ~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~----------------Qv~~~~~~l~~~gF~~i~~ 227 (266)
T d1o54a_ 169 DEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTTN----------------QVQETLKKLQELPFIRIEV 227 (266)
T ss_dssp SCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHSSEEEEEE
T ss_pred cccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCccc----------------HHHHHHHHHHHCCceeEEE
Confidence 556789876 4789999999999999999999998766422 1345677889999998887
Q ss_pred EEcC
Q 019684 252 KRIG 255 (337)
Q Consensus 252 ~~~~ 255 (337)
.++-
T Consensus 228 ~E~l 231 (266)
T d1o54a_ 228 WESL 231 (266)
T ss_dssp ECCC
T ss_pred EEEE
Confidence 7653
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=7.8e-16 Score=128.72 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-----CCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECKIVEGDAEDLPFPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~i~~~~ 183 (337)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++. ...++++..+|+.+ ++++++||+|++..
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~ 127 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP 127 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC
T ss_pred CCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcc
Confidence 37899999999999999999987 569999999999999999763 23458999999976 56678899999998
Q ss_pred cccccCCH-HHHHHHHHHhccCCCEEEEEc
Q 019684 184 SIEYWPDP-QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 184 ~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++++..+. +.+++++.++|||||.+++..
T Consensus 128 p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 128 PIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp CSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 88776654 678999999999999998754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=1.6e-15 Score=127.42 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=89.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~--~~~~~fD~i~~~~~ 184 (337)
+...|||||||+|.++..+++.+|+..++|+|+++.++..|.++. ...|+.++.+|+..+. ++++++|.|++.+.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 345899999999999999999999999999999999999887653 3368999999997765 77889999999888
Q ss_pred ccccCCH--------HHHHHHHHHhccCCCEEEEEc
Q 019684 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 212 (337)
..+.... ..+++++.++|||||.|.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7766543 379999999999999999875
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.62 E-value=1.1e-15 Score=132.02 Aligned_cols=139 Identities=26% Similarity=0.344 Sum_probs=107.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
...+|||||||+|.++..+++++|+.+++..|+ |..++.+. ...+++++.+|+.+. .+ .+|++++.+++|+++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~ 152 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS---GSNNLTYVGGDMFTS-IP--NADAVLLKYILHNWT 152 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---CBTTEEEEECCTTTC-CC--CCSEEEEESCGGGSC
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc---ccCceEEEecCcccC-CC--CCcEEEEEeecccCC
Confidence 457899999999999999999999999999999 55554432 346899999999652 22 489999999999999
Q ss_pred CHH--HHHHHHHHhccCC---CEEEEEcCCCCch----h--Hhhhhhhhhc-----cCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 190 DPQ--RGIREAYRVLKLG---GKACIIGPVYPTF----W--LSRYFADVWM-----LFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 190 ~~~--~~l~~~~~~Lkpg---G~l~i~~~~~~~~----~--~~~~~~~~~~-----~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
|.+ ++|+++++.|+|| |++++.+...+.. . ......+..+ .-+|.++|.++|++|||+++++..
T Consensus 153 d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~ 232 (244)
T d1fp2a2 153 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 232 (244)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEEE
Confidence 875 7999999999998 7888876543211 1 1111111111 235899999999999999999877
Q ss_pred cC
Q 019684 254 IG 255 (337)
Q Consensus 254 ~~ 255 (337)
..
T Consensus 233 ~~ 234 (244)
T d1fp2a2 233 LT 234 (244)
T ss_dssp EE
T ss_pred CC
Confidence 65
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=1.3e-15 Score=129.10 Aligned_cols=110 Identities=21% Similarity=0.243 Sum_probs=91.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP 170 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~ 170 (337)
..+...+++.+.+. ++++|||||||+|.++..+++.. +..+|+++|+++.+++.|+++.. ..++.++++|..+.+
T Consensus 61 P~~~a~~l~~l~l~-~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~ 139 (213)
T d1dl5a1 61 PSLMALFMEWVGLD-KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV 139 (213)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred chhhHHHHHhhhcc-ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence 34555566666664 89999999999999999998875 46799999999999999998743 367889999998777
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
..+++||+|++..+++++++ ++.+.|||||++++.
T Consensus 140 ~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEE
T ss_pred ccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEE
Confidence 77788999999999998874 467889999999874
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.1e-15 Score=137.95 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=98.6
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC------------CCCCe
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------PLKEC 159 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~------------~~~~~ 159 (337)
.........+++.+.+. ++++|||||||+|..+..++...+..+++|||+|+.+++.|+++. ...++
T Consensus 134 e~~~~~~~~~~~~~~l~-~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i 212 (328)
T d1nw3a_ 134 ETSFDLVAQMIDEIKMT-DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212 (328)
T ss_dssp CCCHHHHHHHHHHSCCC-TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred hhHHHHHHHHHHHcCCC-CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence 34555667777777764 889999999999999999999887789999999999999988642 23579
Q ss_pred EEEEcCCCCCCCCCCCc--cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 160 KIVEGDAEDLPFPTDYA--DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 160 ~~~~~d~~~~~~~~~~f--D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+|+++|+.+.++.+..+ |+|++ +.+.|.++....+.++.+.|||||+++.....
T Consensus 213 ~~~~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 213 TLERGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp EEEECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred EEEECcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 99999999888766555 55555 55667888889999999999999999886543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.59 E-value=1.2e-15 Score=132.04 Aligned_cols=150 Identities=23% Similarity=0.248 Sum_probs=108.6
Q ss_pred HHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccE
Q 019684 99 DDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADR 178 (337)
Q Consensus 99 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 178 (337)
..++...+......+|||||||+|.++..+++.+|+.+++++|+.+ .++.+ ....+++++.+|+.+ +.+. .|+
T Consensus 70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~---~~~~r~~~~~~d~~~-~~P~--ad~ 142 (243)
T d1kyza2 70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA---PSYPGVEHVGGDMFV-SIPK--ADA 142 (243)
T ss_dssp HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC---CCCTTEEEEECCTTT-CCCC--CSC
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc---ccCCceEEecccccc-cCCC--cce
Confidence 3444444443356799999999999999999999999999999943 33322 233679999999955 3332 578
Q ss_pred EEecccccccCCHH--HHHHHHHHhccCCCEEEEEcCCCCc------hhHhhhhhhhhc-------cCCCHHHHHHHHHh
Q 019684 179 YVSAGSIEYWPDPQ--RGIREAYRVLKLGGKACIIGPVYPT------FWLSRYFADVWM-------LFPKEEEYIEWFQK 243 (337)
Q Consensus 179 i~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~~~~~~~~-------~~~~~~~~~~~l~~ 243 (337)
++..+++|++++.+ .+|+++++.|+|||++++.+...+. ........+... .-++.+++.++|++
T Consensus 143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~ 222 (243)
T d1kyza2 143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKG 222 (243)
T ss_dssp EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHH
T ss_pred EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHH
Confidence 88999999998754 7999999999999999998654221 111111111111 22578999999999
Q ss_pred CCCcEEEEEEcC
Q 019684 244 AGFKDVQLKRIG 255 (337)
Q Consensus 244 aGF~~v~~~~~~ 255 (337)
|||+++++....
T Consensus 223 AGf~~vkv~~~~ 234 (243)
T d1kyza2 223 AGFQGFKVHCNA 234 (243)
T ss_dssp HCCSCEEEEEEE
T ss_pred cCCCcEEEEEeC
Confidence 999999887543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.3e-15 Score=134.84 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=102.9
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC--------------CCCeEEE
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------------LKECKIV 162 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~--------------~~~~~~~ 162 (337)
...++..+.+. +|++|||+|||+|.++..|++.. |..+|+++|+++++++.|+++.. ..|+++.
T Consensus 87 ~~~Il~~l~i~-pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 87 INMILSMMDIN-PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHTCC-TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHHhCCC-CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 34445556664 89999999999999999999874 67899999999999999997642 2579999
Q ss_pred EcCCCCCC--CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHH
Q 019684 163 EGDAEDLP--FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEW 240 (337)
Q Consensus 163 ~~d~~~~~--~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (337)
.+|+.+.. +.+..||.|++ .++++..++.++.++|||||++++..++... .....+.
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Q----------------v~~~~~~ 224 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNITQ----------------VIELLDG 224 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSHHH----------------HHHHHHH
T ss_pred ecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCHHH----------------HHHHHHH
Confidence 99997653 45678999985 5788888999999999999999987664321 2334556
Q ss_pred HHh--CCCcEEEEEEcC
Q 019684 241 FQK--AGFKDVQLKRIG 255 (337)
Q Consensus 241 l~~--aGF~~v~~~~~~ 255 (337)
|++ .||..+++.++.
T Consensus 225 l~~~~~~f~~i~~~E~~ 241 (324)
T d2b25a1 225 IRTCELALSCEKISEVI 241 (324)
T ss_dssp HHHHTCCEEEEEEECCC
T ss_pred HHHcCCCceeeEEEEEE
Confidence 664 478888877664
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=1.6e-14 Score=123.11 Aligned_cols=141 Identities=16% Similarity=0.042 Sum_probs=102.4
Q ss_pred ccccCCCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCC---CCCCCCc
Q 019684 102 LEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDL---PFPTDYA 176 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~---~~~~~~f 176 (337)
++.+.+ ++|++|||+|||+|..+..+++.. |..+|+|+|+|+.+++.+++++.. .++..+..|+... +.....+
T Consensus 66 l~~l~i-~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 66 LKNFPI-KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCC-CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred cccccc-CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccce
Confidence 344455 489999999999999999999986 578999999999999999988643 5688888888543 2344568
Q ss_pred cEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC--Cch-hHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 177 DRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY--PTF-WLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 177 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
|+|++ .+.+..+...+++++.+.|||||.+++..... ... ..... ..+.. -+.+.||++++...
T Consensus 145 D~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v----------~~~v~-~l~~~gf~iie~i~ 211 (227)
T d1g8aa_ 145 DVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQV----------FREVE-RELSEYFEVIERLN 211 (227)
T ss_dssp EEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHH----------HHHHH-HHHHTTSEEEEEEE
T ss_pred EEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHH----------HHHHH-HHHHcCCEEEEEEc
Confidence 88876 35556677889999999999999998863211 000 00000 12233 34567999999888
Q ss_pred cCc
Q 019684 254 IGP 256 (337)
Q Consensus 254 ~~~ 256 (337)
+.+
T Consensus 212 L~p 214 (227)
T d1g8aa_ 212 LEP 214 (227)
T ss_dssp CTT
T ss_pred CCC
Confidence 764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=1.5e-15 Score=135.06 Aligned_cols=101 Identities=24% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-------CCeEEEEcCCCCCC---CCCCCccEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------KECKIVEGDAEDLP---FPTDYADRY 179 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~~~~~~d~~~~~---~~~~~fD~i 179 (337)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++... ....+...|+..+. ...++||.|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 5689999999999999999998 78999999999999999876321 12344555543211 124579999
Q ss_pred Eec-ccccccCC-------HHHHHHHHHHhccCCCEEEEEc
Q 019684 180 VSA-GSIEYWPD-------PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 180 ~~~-~~l~~~~~-------~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
++. .+++|+++ ...++++++++|||||+|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 975 58889865 3479999999999999999853
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.56 E-value=1.3e-14 Score=121.84 Aligned_cols=104 Identities=23% Similarity=0.192 Sum_probs=86.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLP--FPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~--~~~~~fD~i~~~~~ 184 (337)
....|||||||+|.++..+++.+|+..++|+|+++.++..|.++. ...|+.++.+|+.++. +++.++|.|++.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 346899999999999999999999999999999999999887653 2368999999997764 67889999987665
Q ss_pred ccccCCH--------HHHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDP--------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-.+.... ..+++.+.++|||||.|.+.+.
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 4433322 4799999999999999988653
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1e-14 Score=124.34 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCC--------CCCeEEEEcCCCCCCCCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDLPFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~i 179 (337)
+++.+|||||||+|..+..+++.. +..+|+++|+++++++.|+++.. ..++.++.+|....+..+++||+|
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I 154 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 154 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence 489999999999999999888864 46799999999999999987643 256889999998877778899999
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
++..+++++++ ++.+.|||||++++.
T Consensus 155 ~~~~~~~~ip~------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 155 HVGAAAPVVPQ------ALIDQLKPGGRLILP 180 (224)
T ss_dssp EECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred hhhcchhhcCH------HHHhhcCCCcEEEEE
Confidence 99999998774 578999999999885
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.53 E-value=2.8e-14 Score=121.17 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=87.9
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~ 175 (337)
+...+++.+.+ +++.+|||||||+|..+..+++. ..+|+++|+++.+++.|+++.. ..|+.++.+|........++
T Consensus 58 ~~a~ml~~L~l-~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~p 134 (224)
T d1vbfa_ 58 LGIFMLDELDL-HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (224)
T ss_dssp HHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred hHHHHHHHhhh-cccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhh
Confidence 44445566666 48999999999999999999988 6799999999999999998743 46899999998665555678
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
||.|++..+++++++ .+.+.|||||+|++.
T Consensus 135 fD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 135 YDRVVVWATAPTLLC------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEEESSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred HHHHHhhcchhhhhH------HHHHhcCCCCEEEEE
Confidence 999999999888774 467889999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.1e-13 Score=123.96 Aligned_cols=122 Identities=21% Similarity=0.239 Sum_probs=90.1
Q ss_pred ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHH---hhCCCCCeEEEE
Q 019684 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKECKIVE 163 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~---~~~~~~~~~~~~ 163 (337)
++.....++.+.+.+.+..... ++++|||||||+|.++..+++. +..+|+++|.|+.+....+ ++....++.++.
T Consensus 13 ml~D~~r~~~y~~ai~~~~~~~-~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~ 90 (311)
T d2fyta1 13 MLKDKIRTESYRDFIYQNPHIF-KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIK 90 (311)
T ss_dssp HHTCHHHHHHHHHHHHHCGGGT-TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HhCCHHHHHHHHHHHHhccccC-CcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEE
Confidence 3333333444444444443433 7899999999999999988887 3468999999998764333 233346799999
Q ss_pred cCCCCCCCCCCCccEEEecccccccCC---HHHHHHHHHHhccCCCEEEE
Q 019684 164 GDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 164 ~d~~~~~~~~~~fD~i~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i 210 (337)
+|+++++.++++||+|++..+.++... ...++....++|||||+++-
T Consensus 91 ~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 91 GKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 999999888889999999766665543 45778888899999999863
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=7.7e-14 Score=125.87 Aligned_cols=98 Identities=26% Similarity=0.277 Sum_probs=80.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhh----CCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
++++|||||||+|.++..+++. +..+|+++|.|+ ++..|+++ ....+++++.+|+.++++++++||+|++..+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 6899999999999999988876 346899999986 44555543 33467999999999999988999999996655
Q ss_pred ccc---CCHHHHHHHHHHhccCCCEEE
Q 019684 186 EYW---PDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 186 ~~~---~~~~~~l~~~~~~LkpgG~l~ 209 (337)
+++ .....++..+.++|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 544 556789999999999999985
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=8.9e-14 Score=124.77 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=80.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHH---hhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~---~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++++|||||||+|.++..+++. +..+|+|+|.|+.+....+ ++....++.++.+|+.+++++.++||+|++..+.+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 6899999999999999988886 3468999999986533222 23334679999999999998888999999876655
Q ss_pred cc---CCHHHHHHHHHHhccCCCEEE
Q 019684 187 YW---PDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 187 ~~---~~~~~~l~~~~~~LkpgG~l~ 209 (337)
++ ...+.++..+.++|||||.++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 54 456789999999999999986
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=6.2e-14 Score=122.12 Aligned_cols=164 Identities=18% Similarity=0.075 Sum_probs=122.0
Q ss_pred hHHhhhhhhhHHHhhhhhHhhhcccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCC
Q 019684 64 PRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 143 (337)
Q Consensus 64 ~~~~~~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 143 (337)
..+.+|..+..+||+....+...+++|++.++.+.+..+...... +..+|||+|||+|..+..++.. |..+|+++|+|
T Consensus 65 ~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~-~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis 142 (271)
T d1nv8a_ 65 GYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY-GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVS 142 (271)
T ss_dssp TCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH-TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESC
T ss_pred CCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccc-cccEEEEeeeeeehhhhhhhhc-ccceeeechhh
Confidence 456889999999999999999999999999999999888765432 4568999999999999998865 88999999999
Q ss_pred HHHHHHHHhhCCC----CCeEEEEcCCCCC-CCCCCCccEEEecc-----------cccccCCH--------HHHHHH-H
Q 019684 144 PHQLAKAKQKEPL----KECKIVEGDAEDL-PFPTDYADRYVSAG-----------SIEYWPDP--------QRGIRE-A 198 (337)
Q Consensus 144 ~~~~~~a~~~~~~----~~~~~~~~d~~~~-~~~~~~fD~i~~~~-----------~l~~~~~~--------~~~l~~-~ 198 (337)
+.+++.|++|+.. .++.+..+|..+. +...++||+|+++- ...|-|.. -.++++ +
T Consensus 143 ~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~ 222 (271)
T d1nv8a_ 143 SKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFF 222 (271)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHH
Confidence 9999999988532 3567788888653 33346899999951 11111111 022322 4
Q ss_pred HHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 199 YRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 199 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
.+.|+|||++++.-... ..+.+.+++++.||
T Consensus 223 ~~~L~~~G~l~~Eig~~-----------------Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 223 GRYDTSGKIVLMEIGED-----------------QVEELKKIVSDTVF 253 (271)
T ss_dssp HHCCCTTCEEEEECCTT-----------------CHHHHTTTSTTCEE
T ss_pred HHhcCCCCEEEEEECHH-----------------HHHHHHHHHHhCCE
Confidence 57899999988764321 23556667777787
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=1.5e-13 Score=126.04 Aligned_cols=121 Identities=10% Similarity=0.075 Sum_probs=91.4
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------------CCe
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------KEC 159 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~~~ 159 (337)
+....+...+++.+.+. ++++|||||||+|..+..++..++..+|+|||+|+.+++.|+++... ..+
T Consensus 199 El~~~~i~~Il~~l~Lk-pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~ 277 (406)
T d1u2za_ 199 ELLPNFLSDVYQQCQLK-KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277 (406)
T ss_dssp CBCHHHHHHHHHHTTCC-TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred cCCHHHHHHHHHHhCCC-CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 44556777888888774 89999999999999999999988777999999999999999875421 123
Q ss_pred EE-EEcCCCCCCCC---CCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 160 KI-VEGDAEDLPFP---TDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 160 ~~-~~~d~~~~~~~---~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.+ ..++..+.+.. -..+|+|++.+ ++|.++....+.++.+.|||||+++..+..
T Consensus 278 ~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 278 EFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred eeeeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 33 33444332211 13467888654 557788889999999999999999887643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.39 E-value=4.1e-13 Score=113.15 Aligned_cols=109 Identities=26% Similarity=0.335 Sum_probs=90.2
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPF 171 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~ 171 (337)
..+...+++.+.+. ++.+|||||||+|..+..++... +.+|+++|.++.+++.|++++ ...|+.++++|..+...
T Consensus 64 P~~~a~ml~~L~l~-~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~ 141 (215)
T d1jg1a_ 64 PHMVAIMLEIANLK-PGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP 141 (215)
T ss_dssp HHHHHHHHHHHTCC-TTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred hhhHHHHHHhhccC-ccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc
Confidence 34455556666664 89999999999999999998875 568999999999999999874 34789999999977666
Q ss_pred CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 172 PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 172 ~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
..+.||.|++...+.++++ .+.+.|+|||++++.
T Consensus 142 ~~~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 142 PKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp GGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred ccCcceeEEeecccccCCH------HHHHhcCCCCEEEEE
Confidence 6788999999999988774 367789999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.36 E-value=1.1e-12 Score=111.34 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC------CCCeEEEEeCCHHHHHHHHhhCC--------CCCeEEEEcCCCCCCCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV------DAKNVTILDQSPHQLAKAKQKEP--------LKECKIVEGDAEDLPFPTD 174 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~------~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~ 174 (337)
+++.+|||||||+|..+..+++.. ++.+|+++|.++++++.|+++.. ..|+.+..+|..+...+.+
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~ 158 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA 158 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence 488999999999999998887753 24589999999999999987642 2579999999977666677
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+||.|++...+.++++ .+.+.|||||++++.
T Consensus 159 ~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 159 PYNAIHVGAAAPDTPT------ELINQLASGGRLIVP 189 (223)
T ss_dssp SEEEEEECSCBSSCCH------HHHHTEEEEEEEEEE
T ss_pred ceeeEEEEeechhchH------HHHHhcCCCcEEEEE
Confidence 8999999999988774 478899999999874
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-11 Score=106.37 Aligned_cols=165 Identities=11% Similarity=-0.067 Sum_probs=108.1
Q ss_pred HHHhhhhhHhhhcccCCCcchH----HHHHHhccccC-CCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHH
Q 019684 74 FWFYRFLSIVYDHVINPGHWTE----DMRDDALEPAD-LSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 148 (337)
Q Consensus 74 ~~~y~~~~~~y~~~~~~~~~~~----~~~~~~l~~~~-~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~ 148 (337)
.+||+....+....+.|+..++ .+...++.... ...+..+|||+|||+|..+..++.+.|+++++|+|+|+.+++
T Consensus 20 ~~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~ 99 (250)
T d2h00a1 20 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFN 99 (250)
T ss_dssp HHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred HHHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHH
Confidence 4677777777888899875543 23333332221 113456999999999999999999989999999999999999
Q ss_pred HHHhhCCC----CCeEEEEcCCCCC------CCCCCCccEEEecccccccCCH---------------------------
Q 019684 149 KAKQKEPL----KECKIVEGDAEDL------PFPTDYADRYVSAGSIEYWPDP--------------------------- 191 (337)
Q Consensus 149 ~a~~~~~~----~~~~~~~~d~~~~------~~~~~~fD~i~~~~~l~~~~~~--------------------------- 191 (337)
.|+++... .++.++..+.... ...+++||+|+|+--+....+.
T Consensus 100 ~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~ 179 (250)
T d2h00a1 100 YAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA 179 (250)
T ss_dssp HHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHH
T ss_pred HHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCcccccccc
Confidence 99988532 4577776654321 1235679999997555432211
Q ss_pred --------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEc
Q 019684 192 --------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRI 254 (337)
Q Consensus 192 --------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 254 (337)
.+++++....++..|++...-. ...+.+.+.+.|++.||..+++.++
T Consensus 180 ~gGe~~F~~~ii~es~~~~~~~g~~t~~ig----------------~~~~l~~i~~~L~~~g~~~i~~ie~ 234 (250)
T d2h00a1 180 EGGELEFVKRIIHDSLQLKKRLRWYSCMLG----------------KKCSLAPLKEELRIQGVPKVTYTEF 234 (250)
T ss_dssp HHTHHHHHHHHHHHHHHHGGGBSCEEEEES----------------STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ccchhhHHHHHHHHHHHHhhcCcEEEEEec----------------chhhHHHHHHHHHHcCCCeEEEEEe
Confidence 1233334444444444432111 1235678899999999998877766
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.27 E-value=9.9e-12 Score=107.75 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=95.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.++.+|||+|||+|.+++.++.. +.++|+++|+|+.+++.+++++. .++++++++|+.++.. .+.||.|++..
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~- 182 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY- 182 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC-
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECC-
Confidence 47899999999999999999987 45799999999999999998753 2458999999987654 45799998752
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
.+....++.++.+.|+|||++.+.+....... .-...+.+.+..+..||.+..+
T Consensus 183 ---p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~----------~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 183 ---VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLM----------PREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp ---CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT----------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred ---CCchHHHHHHHHhhcCCCCEEEEEeccccccc----------hhhHHHHHHHHHHHcCCceEEE
Confidence 23345678889999999999976543211110 0123566778889999986543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=4.4e-12 Score=104.84 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=91.0
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCC-----
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLP----- 170 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~----- 170 (337)
.+++++.+.. .++..|||++||+|..+..+++.+|+++|+|+|.++.+++.|+++... .++.++++++.++.
T Consensus 12 l~evi~~l~~-~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 12 VREVIEFLKP-EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHHCC-CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhhCC-CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 3344444444 478999999999999999999999999999999999999999988653 56899999886542
Q ss_pred CCCCCccEEEeccccc---------ccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 171 FPTDYADRYVSAGSIE---------YWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+..++||.|+....+. .+......+..+.++|+|||.+++.+..
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 4457899998754442 1222347899999999999999987654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=1.6e-11 Score=109.76 Aligned_cols=133 Identities=20% Similarity=0.097 Sum_probs=93.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC---CCeEEEEcCCCCC----CCCCCCccEEEec
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIVEGDAEDL----PFPTDYADRYVSA 182 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~----~~~~~~fD~i~~~ 182 (337)
++++|||++||+|.++..++.. +.+|+++|+|+.+++.+++++.. .+++++++|+.+. +...++||+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 6899999999999999998865 78999999999999999987432 4689999998552 3445689999984
Q ss_pred ccccc---------cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 183 GSIEY---------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 183 ~~l~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
---.. ..+..+++..+.++|+|||.|++.+....-. ...+ .+.+.+.+.++|-+...+..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~-~~~f----------~~~v~~a~~~a~~~~~~~~~ 291 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-EPLF----------YAMVAEAAQDAHRLLRVVEK 291 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHH----------HHHHHHHHHHTTCCEEEEEE
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccC-HHHH----------HHHHHHHHHHcCCCEEEEEe
Confidence 32111 1223468899999999999998876543211 0000 12344566777866544444
Q ss_pred cC
Q 019684 254 IG 255 (337)
Q Consensus 254 ~~ 255 (337)
.+
T Consensus 292 ~~ 293 (318)
T d1wxxa2 292 RG 293 (318)
T ss_dssp EC
T ss_pred cC
Confidence 44
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=9.3e-12 Score=111.61 Aligned_cols=106 Identities=20% Similarity=0.068 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCC----CCCCCCccEEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDL----PFPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~----~~~~~~fD~i~ 180 (337)
.++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++|+.. .+++++++|+.+. +..+.+||+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 47899999999999999998877 345899999999999999987532 4578999998542 23457899999
Q ss_pred eccccccc---------CCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 181 SAGSIEYW---------PDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 181 ~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+.--...- .+..+++..+.++|+|||.|++.+...
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 84322111 123468889999999999999876543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.14 E-value=6.3e-11 Score=97.95 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=59.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~ 184 (337)
.|++|||+|||+|.+++.++.. +..+|+|+|+++.+++.|++|.. ++.++++|+.+++ ++||+|+++--
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~~--~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG--GVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT--TSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHccc--cccEEEEehhhcC---CcceEEEeCcc
Confidence 5899999999999999887776 34689999999999999999874 6889999997764 67999998743
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.13 E-value=7.7e-11 Score=97.58 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=74.8
Q ss_pred CCCEEEEEcCcccHH----HHHHHhhC----CCCeEEEEeCCHHHHHHHHhhC---------------------CC----
Q 019684 110 RNMLVVDVGGGTGFT----TLGIVKHV----DAKNVTILDQSPHQLAKAKQKE---------------------PL---- 156 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~----~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~---------------------~~---- 156 (337)
+.-+|+++|||+|.- +..+.+.. ...+++|+|+|+.+++.|++.. ..
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 456999999999974 33333321 2358999999999999998421 00
Q ss_pred ---------CCeEEEEcCCCCC-CCCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEE
Q 019684 157 ---------KECKIVEGDAEDL-PFPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 157 ---------~~~~~~~~d~~~~-~~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~ 211 (337)
..+.+...+.... +...+.||+|+|.+++.++++. +++++++++.|+|||+|++-
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1244555555332 3345679999999999999876 58999999999999998875
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.08 E-value=4.4e-11 Score=95.24 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=76.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCC-CCCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAED-LPFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~-~~~~~~~fD~i~~~~~ 184 (337)
++.+|||+|||+|.+++.++.+ +..+|+++|.++.+++.++++... .+++++++|+.. +....++||+|++.--
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHh-CcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 6899999999999999988877 335999999999999999987432 458999999855 3445678999997432
Q ss_pred ccccCCHHHHHHHHH--HhccCCCEEEEEc
Q 019684 185 IEYWPDPQRGIREAY--RVLKLGGKACIIG 212 (337)
Q Consensus 185 l~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 212 (337)
.. .......+..+. +.|+|||.+++..
T Consensus 93 y~-~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YA-KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SH-HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hc-cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 11 122235566554 4699999998864
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.07 E-value=1.2e-10 Score=102.47 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCC----CCCCCCccEE
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL----PFPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~----~~~~~~fD~i 179 (337)
.++.+|||++||+|.+++.++.. +++|++||.|+.+++.|++|.. ..+++|+++|+.+. ....++||+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 36889999999999999998876 7899999999999999998742 23589999998542 1234679999
Q ss_pred Eec---cc------ccccC-CHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 180 VSA---GS------IEYWP-DPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 180 ~~~---~~------l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
++. +. ...+. +...+++.+.++|+|||.+++.+.+
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 983 11 11111 2345777888999999987666543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.05 E-value=2.3e-10 Score=101.74 Aligned_cols=104 Identities=14% Similarity=0.023 Sum_probs=80.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCCC----CCCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAEDL----PFPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~----~~~~~~fD~i~ 180 (337)
++.+|||++||+|.+++.++.. +..+|+++|+|+.+++.+++|.. ..+++++++|+.+. ....++||+|+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 6899999999999999987765 34589999999999999998742 24689999998542 22346799999
Q ss_pred eccc---------ccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 181 SAGS---------IEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 181 ~~~~---------l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+.-- .....+..++++.+.++|+|||.|++....
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 8311 111123457899999999999999987654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.00 E-value=6.2e-10 Score=92.55 Aligned_cols=121 Identities=15% Similarity=0.164 Sum_probs=81.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CCeEEEEcCCCCCCCCCCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECKIVEGDAEDLPFPTDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~ 187 (337)
.|.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.+++++.. .+.+++.+|+.++ +++||+|+++--...
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGS 121 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSS
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcccc
Confidence 6789999999999999987776 446999999999999999998654 3478888888665 357999998755433
Q ss_pred cCC--HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEE
Q 019684 188 WPD--PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLK 252 (337)
Q Consensus 188 ~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 252 (337)
... ....+.. .+.+++.++........ ..+-+..+..+.|+.+....
T Consensus 122 ~~~~~d~~~l~~---~~~~~~~v~~ih~~~~~---------------~~~~i~~~~~~~g~~i~~~~ 170 (201)
T d1wy7a1 122 QRKHADRPFLLK---AFEISDVVYSIHLAKPE---------------VRRFIEKFSWEHGFVVTHRL 170 (201)
T ss_dssp SSTTTTHHHHHH---HHHHCSEEEEEEECCHH---------------HHHHHHHHHHHTTEEEEEEE
T ss_pred ccccccHHHHHH---HHhhcccchhcccchHH---------------HHHHHHHHHhhcCceEEEEE
Confidence 221 1233333 33445555443221111 12235567788898765543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.96 E-value=2.8e-10 Score=92.22 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=69.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCC--CeEEEEcCCCC----CCCCCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIVEGDAED----LPFPTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~d~~~----~~~~~~~fD~i~~~~ 183 (337)
++.+|||+|||+|.+++.++.+ +++++++|.|+.+++.+++++... +.++...+... .....++||+|++.-
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 6889999999999999998887 789999999999999999875421 22344444321 123456799999853
Q ss_pred cccccCCHHHHHHHHH--HhccCCCEEEEEc
Q 019684 184 SIEYWPDPQRGIREAY--RVLKLGGKACIIG 212 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 212 (337)
-.. . +....+.++. ..|+|||.+++..
T Consensus 119 PY~-~-~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 119 PYA-M-DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CTT-S-CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ccc-c-CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 322 1 2233444443 4799999988764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=3.4e-10 Score=95.08 Aligned_cols=118 Identities=15% Similarity=0.255 Sum_probs=83.8
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDA 166 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~ 166 (337)
+....+...++... +..+|||||||+|..+..+++.++ +.+++++|.++.+.+.|+++.. ..+++++.+|.
T Consensus 42 ~~~G~lL~~lv~~~----kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~ 117 (214)
T d2cl5a1 42 DAKGQIMDAVIREY----SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS 117 (214)
T ss_dssp HHHHHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred HHHHHHHHHHHHhh----CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccc
Confidence 33444544444443 568999999999999999998764 6899999999999999987642 25699999998
Q ss_pred CC-CC-----CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 167 ED-LP-----FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 167 ~~-~~-----~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
.+ ++ +..++||+|+....-... .....+.+..++|+|||.+++-+..
T Consensus 118 ~e~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Ddvl 170 (214)
T d2cl5a1 118 QDLIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADNVI 170 (214)
T ss_dssp HHHGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred cccccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeCcC
Confidence 54 22 334679999975321111 1123567778899999987664433
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.3e-09 Score=89.23 Aligned_cols=101 Identities=11% Similarity=0.021 Sum_probs=78.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCC-CCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAED-LPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~-~~~~~~~fD~i~~~~~l 185 (337)
.+.+|||++||+|.++...+.+ +..+|+.||.++.+++.++++. ...++.++..|+.+ +...+.+||+|++.--.
T Consensus 43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 5789999999999999998887 3458999999999999999874 23568888888754 33446789999986443
Q ss_pred cccCCHHHHHHHHHH--hccCCCEEEEEc
Q 019684 186 EYWPDPQRGIREAYR--VLKLGGKACIIG 212 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~--~LkpgG~l~i~~ 212 (337)
. ......++..+.+ .|+|+|.+++..
T Consensus 122 ~-~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 R-RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp S-TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred c-cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2 2345667777765 599999998863
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=2e-09 Score=90.47 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=82.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCCCC-CC-----CCCCCccE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAED-LP-----FPTDYADR 178 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~~~-~~-----~~~~~fD~ 178 (337)
+.++|||||||+|..+..+++..+ +.+++.+|.+++..+.|+++. ...+++++.+|+.+ ++ ...++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 578999999999999999999875 689999999999999999774 23569999999843 22 23567999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
|+...-- .+....++.+.+.|+|||.+++-+...
T Consensus 139 ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 139 AVVDADK---ENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 9975322 345678899999999999999876543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.84 E-value=4.7e-09 Score=85.68 Aligned_cols=119 Identities=9% Similarity=0.014 Sum_probs=86.6
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAE 167 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~ 167 (337)
+.+..+++.+++.+...-.+.+|||++||+|.++...+.+ +..+|+++|.++.+++.++++.. ..+++++++|+.
T Consensus 23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~ 101 (182)
T d2fhpa1 23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN 101 (182)
T ss_dssp CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch
Confidence 4445555555554433336899999999999999998887 34579999999999999998742 246899999985
Q ss_pred CC----CCCCCCccEEEecccccccCCHHHHHHHHHH--hccCCCEEEEEc
Q 019684 168 DL----PFPTDYADRYVSAGSIEYWPDPQRGIREAYR--VLKLGGKACIIG 212 (337)
Q Consensus 168 ~~----~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~--~LkpgG~l~i~~ 212 (337)
+. .....+||+|++.--. ...+....+..+.. .|+|+|.+++..
T Consensus 102 ~~l~~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 102 RALEQFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhhhhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 42 1234579999975432 23455677888765 699999988753
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.79 E-value=5e-09 Score=92.67 Aligned_cols=103 Identities=20% Similarity=0.147 Sum_probs=80.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC--------CCCCeEEEEcCCCC-CCCCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECKIVEGDAED-LPFPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~~~d~~~-~~~~~~~fD~i~ 180 (337)
..++||.||+|.|..+..+.+..+..+|+.+|+++.+++.|++.. ..++++++.+|+.+ +...+++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 568999999999999999988867789999999999999999764 24679999999854 223456799999
Q ss_pred eccccccc-CC------HHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYW-PD------PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~-~~------~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+...=.+. .. -.++++.+.+.|+|||.+++..
T Consensus 157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 64321111 11 1479999999999999998753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.76 E-value=2.1e-08 Score=84.93 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=74.5
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCC
Q 019684 95 EDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPT 173 (337)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~ 173 (337)
..+.+.+++.+.+. ++++|||||||+|.++..+++. +.+|+++|+++.+++.++++.. .++++++.+|+.+.+++.
T Consensus 7 ~~i~~~iv~~~~~~-~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 7 KHNIDKIMTNIRLN-EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHHTTCCCC-TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHHhcCCC-CCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 44666777777764 8899999999999999999998 6799999999999999998764 478999999998877655
Q ss_pred CCccEEEecccccccCCHHHHHHHHH
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAY 199 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~ 199 (337)
.....|+ .+.-.++..+ ++..+.
T Consensus 84 ~~~~~vv-~NLPYnIss~--il~~ll 106 (235)
T d1qama_ 84 NQSYKIF-GNIPYNISTD--IIRKIV 106 (235)
T ss_dssp SCCCEEE-EECCGGGHHH--HHHHHH
T ss_pred cccceee-eeehhhhhHH--HHHHHH
Confidence 4333444 3434444432 444443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.74 E-value=2.9e-08 Score=88.55 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=103.7
Q ss_pred ccCCCcchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC-----CCCeEEEEeCCHHHHHHHHhhCC--CCCe
Q 019684 87 VINPGHWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKEP--LKEC 159 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~--~~~~ 159 (337)
.+.|++....+...+...... .++.+|||.|||+|.++..+.+.. +..+++|+|+++.++..|+.+.. ..+.
T Consensus 95 ~~TP~~i~~~m~~l~~~~~~~-~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~ 173 (328)
T d2f8la1 95 QMTPDSIGFIVAYLLEKVIQK-KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM 173 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHHTT-CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC
T ss_pred EECcHHHHHHHHHHHHHHhCC-CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhh
Confidence 344544444343332222222 367899999999999998876532 34589999999999999986632 2456
Q ss_pred EEEEcCCCCCCCCCCCccEEEecccccccCC------------------HHHHHHHHHHhccCCCEEEEEcCCCCchhHh
Q 019684 160 KIVEGDAEDLPFPTDYADRYVSAGSIEYWPD------------------PQRGIREAYRVLKLGGKACIIGPVYPTFWLS 221 (337)
Q Consensus 160 ~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 221 (337)
.+..+|.... ....+||+|+++--+..... ...++..+.+.|+|||+++++.+.. ++.
T Consensus 174 ~~~~~d~~~~-~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~---~l~ 249 (328)
T d2f8la1 174 TLLHQDGLAN-LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA---MFG 249 (328)
T ss_dssp EEEESCTTSC-CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG---GGG
T ss_pred hhhccccccc-cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc---ccc
Confidence 6777776543 23467999999754432211 1247999999999999988875531 111
Q ss_pred hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 222 RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
-.+...+++.|.+.+ .+..+..++...+.+
T Consensus 250 ---------~~~~~~lR~~L~~~~-~i~~ii~lp~~~F~~ 279 (328)
T d2f8la1 250 ---------TSDFAKVDKFIKKNG-HIEGIIKLPETLFKS 279 (328)
T ss_dssp ---------STTHHHHHHHHHHHE-EEEEEEECCGGGSCC
T ss_pred ---------CchhHHHHHHHHhCC-cEEEEEECCccccCC
Confidence 123456777766653 666777777766654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.74 E-value=8.1e-09 Score=89.80 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------------CCCCeEEEEcCCCCCCCCCCC
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------------PLKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------------~~~~~~~~~~d~~~~~~~~~~ 175 (337)
++..+||.||+|.|..+..+.+. +..+|+.+|+++.+++.|++.. ..++++++.+|+...--.+++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 36789999999999999998875 5679999999999999998753 236789999998542223567
Q ss_pred ccEEEecccccccCC----HHHHHHHHHHhccCCCEEEEEc
Q 019684 176 ADRYVSAGSIEYWPD----PQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 176 fD~i~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
||+|++...-..-+. -.++++.+.+.|+|||.+++..
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 999997433221111 1479999999999999998754
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.71 E-value=8.7e-09 Score=86.86 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=82.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCC-CC------CCCCCcc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAED-LP------FPTDYAD 177 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~------~~~~~fD 177 (337)
+.++||||||++|..+..+++..| +++++.+|.+++..+.|+++.. ..+++++.+|+.+ ++ ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 568999999999999999998876 6899999999999999997642 2469999999843 22 1246799
Q ss_pred EEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 178 RYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 178 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+|+...- -......++.+.+.|+|||.+++-+..
T Consensus 139 ~iFiDa~---k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 139 FIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp EEEECSC---STTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred EEEeccc---hhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 9997532 245678899999999999999987553
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.69 E-value=2.6e-08 Score=87.01 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=81.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
..++||-||.|.|..+..+.+..+..+|+.+|+++.+++.+++.. ..++++++.+|+.. +.-.+++||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 568999999999999999998866789999999999999998754 34789999999843 3334567999997
Q ss_pred cccccc-cCC----HHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEY-WPD----PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~-~~~----~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...-.. .+. -.++++.+.+.|+|||.+++...
T Consensus 169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 532221 111 24799999999999999988754
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=9.9e-08 Score=78.93 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=81.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHH---HhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA---KQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIE 186 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a---~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~ 186 (337)
++.+|+|+|||.|.-++.++-..|..+++.+|.+..-+... .+.+.-.|+++++..+++.. .+.+||+|++..+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh--
Confidence 45799999999999999999988999999999998655444 44555578999999998864 3457999998764
Q ss_pred ccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 187 YWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 187 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.+...+++-+...+++||.+++.-
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 457789999999999999998864
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.65 E-value=4.5e-08 Score=84.80 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
+.++||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.. ..++++++.+|+.. +...+++||+|++
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 568999999999999999998766789999999999999998764 34689999999843 2334567999997
Q ss_pred cccccccCC----HHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...-..-.. -.++++.+.+.|+|||.++....
T Consensus 155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 532211111 24799999999999999988643
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.63 E-value=2.7e-07 Score=77.79 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=109.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHH---HHHhhCCCCCeEEEEcCCCCCCC---CCCCccEEEecc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA---KAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAG 183 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~---~a~~~~~~~~~~~~~~d~~~~~~---~~~~fD~i~~~~ 183 (337)
...+|+|||+|.|.-++.++-..|+.+++.+|.+..-.. .+.+.+.-.++.++...++++.. ..++||+|++..
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 467999999999999999999889999999999985544 44455555788888888765432 235799999975
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcccccccc
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVR 263 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~ 263 (337)
+.....++.-+...+++||.+++.-...... ..++....++..|++...+..+.-......+
T Consensus 150 ----va~l~~ll~~~~~~l~~~g~~i~~KG~~~~~--------------El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r 211 (239)
T d1xdza_ 150 ----VARLSVLSELCLPLVKKNGLFVALKAASAEE--------------ELNAGKKAITTLGGELENIHSFKLPIEESDR 211 (239)
T ss_dssp ----CSCHHHHHHHHGGGEEEEEEEEEEECC-CHH--------------HHHHHHHHHHHTTEEEEEEEEEECTTTCCEE
T ss_pred ----hhCHHHHHHHHhhhcccCCEEEEECCCChHH--------------HHHHHHHHHHHcCCEEEEEEEEeCCCCCCCE
Confidence 4467889999999999999998864321111 1244556788899998877666432222211
Q ss_pred cccceeeeeeeeccCCCCCCCCccCchhh
Q 019684 264 RHGLIMGCSVTGVKPASGDSPLQLGPKAE 292 (337)
Q Consensus 264 ~~~~~~~~~v~~~kp~~~~~~~~~g~~~~ 292 (337)
.+ ..+.-.++....-|-..|...+
T Consensus 212 ---~l--v~i~K~~~~p~~yPR~~g~p~k 235 (239)
T d1xdza_ 212 ---NI--MVIRKIKNTPKKYPRKPGTPNK 235 (239)
T ss_dssp ---EE--EEEEECSCCCTTCSCSTTHHHH
T ss_pred ---EE--EEEEECCCCCCCCCCCCCCCCC
Confidence 11 1244555665555555554433
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=3.8e-08 Score=85.63 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=92.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
..++||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.. ..++++++.+|+.. +.-..++||+|++
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 568999999999999999998766789999999999999998764 34789999999843 2234567999998
Q ss_pred cccccccCC----HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
-..-..-+. -.++++.+.+.|+|||.+++........ . . ....+.+.+++. |..+......
T Consensus 158 D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~-~-~----------~~~~~~~tl~~~-F~~v~~y~~~ 222 (285)
T d2o07a1 158 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH-L-D----------LIKEMRQFCQSL-FPVVAYAYCT 222 (285)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC-H-H----------HHHHHHHHHHHH-CSEEEEEEEE
T ss_pred cCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhh-H-H----------HHHHHHHHHHhc-CCeeeEEeee
Confidence 532111111 1268999999999999998864321110 0 0 123344556555 8777765543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.61 E-value=4.1e-08 Score=86.12 Aligned_cols=104 Identities=22% Similarity=0.186 Sum_probs=79.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-------CCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
..++||-||.|.|..+..+.+..+..+|+.+|+++.+++.+++... .++++++.+|+.. +....++||+|++
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 5689999999999999999987666799999999999999998653 3678999999844 2234567999998
Q ss_pred cccccccCC----HHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPD----PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...-..-+. -..+++.+.+.|+|||.++....
T Consensus 186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 533221111 13689999999999999998754
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.55 E-value=1.1e-07 Score=83.04 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=82.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC-------CCCCeEEEEcCCCC-C-CCCCCCccEEE
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECKIVEGDAED-L-PFPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~-~-~~~~~~fD~i~ 180 (337)
+.++||-||.|.|..+..+.+..+..+++.+|+++++++.+++.. ..++++++.+|+.. + ...+++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 568999999999999999998866679999999999999998754 24779999999743 2 23356899999
Q ss_pred ecccccccCC----HHHHHHHHHHhccCCCEEEEEcCC
Q 019684 181 SAGSIEYWPD----PQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 181 ~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
....-..-+. -.++++.+.+.|+|||.+++....
T Consensus 160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 7432211111 147999999999999999987543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=8.4e-08 Score=77.81 Aligned_cols=110 Identities=25% Similarity=0.308 Sum_probs=84.3
Q ss_pred HhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CCCC
Q 019684 100 DALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTD 174 (337)
Q Consensus 100 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~~~ 174 (337)
++++.+.. .++..++|..+|.|.++..+.+. +.+|+|+|.++.+++.+++.. ..++.+++.++.++. ...+
T Consensus 9 Evl~~l~~-~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~-~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 9 EALDLLAV-RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH-LPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp HHHHHHTC-CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC-CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HHHHhcCC-CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc-ccceeEeehHHHHHHHHHHHcCCC
Confidence 33444433 48899999999999999999997 679999999999999998764 468999998876542 3346
Q ss_pred CccEEEecccccc--cCC-------HHHHHHHHHHhccCCCEEEEEcC
Q 019684 175 YADRYVSAGSIEY--WPD-------PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 175 ~fD~i~~~~~l~~--~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+|.|+....+.. +.+ ....|......|+|||.+++...
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 7999998543322 222 23578889999999999998865
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.54 E-value=4.9e-09 Score=89.48 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=70.1
Q ss_pred HHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCCCCCCCc
Q 019684 98 RDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLPFPTDYA 176 (337)
Q Consensus 98 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~f 176 (337)
.+.+++.+... ++++|||||||+|.++..+++. +.+|+++|+++.+++.++++.. ..+++++.+|+.+.+++...+
T Consensus 18 i~kIv~~~~~~-~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 18 LNQIIKQLNLK-ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCCCC-SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcCCC-CCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 34445555543 7889999999999999999998 6799999999999988887754 467999999999888777767
Q ss_pred cEEEecccccccCC
Q 019684 177 DRYVSAGSIEYWPD 190 (337)
Q Consensus 177 D~i~~~~~l~~~~~ 190 (337)
+.|+++-- .|+..
T Consensus 95 ~~vv~NLP-Y~Ist 107 (245)
T d1yuba_ 95 YKIVGNIP-YHLST 107 (245)
T ss_dssp EEEEEECC-SSSCH
T ss_pred eeEeeeee-hhhhH
Confidence 76665544 45654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.52 E-value=8.4e-08 Score=80.20 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=75.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDY 175 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~ 175 (337)
+.+.+++.+.. +++.+|||.|||+|.++..+.+..+ ...++|+|+++..+..++ ....+.+|..... ....
T Consensus 7 i~~~m~~l~~~-~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~------~~~~~~~~~~~~~-~~~~ 78 (223)
T d2ih2a1 7 VVDFMVSLAEA-PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP------WAEGILADFLLWE-PGEA 78 (223)
T ss_dssp HHHHHHHHCCC-CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT------TEEEEESCGGGCC-CSSC
T ss_pred HHHHHHHhcCC-CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc------cceeeeeehhccc-cccc
Confidence 33334444443 3788999999999999988876643 467999999987654332 3567778875543 3456
Q ss_pred ccEEEecccccccCC-----------------------------HHHHHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSAGSIEYWPD-----------------------------PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~~~l~~~~~-----------------------------~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
||+|+++--...... ...++..+.+.|+|||++.++.+
T Consensus 79 fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 79 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 999998654432110 12567889999999999988765
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.46 E-value=2.1e-07 Score=75.64 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=74.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-----CCCeEEEEcCCCC---CCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIVEGDAED---LPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~---~~~~~~~fD~i~~ 181 (337)
.+.+|||+.||||.++.+.+.+ +..+|+.||.+...++..+++.. .....+...|+.+ ......+||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 5789999999999999999988 34689999999999999987732 2345666666522 2233457999998
Q ss_pred cccccccCCHHHHHHHHHH--hccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYR--VLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 213 (337)
.--.. ......++..+.. .|+++|.+++...
T Consensus 122 DPPY~-~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 122 DPPFH-FNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred chhHh-hhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 54432 2334567777765 6999999988643
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=3.3e-07 Score=74.14 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=73.8
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCcc
Q 019684 107 LSNRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYAD 177 (337)
Q Consensus 107 ~~~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD 177 (337)
+.+++.+|||+||++|.|+..+.+.. +...++++|+.+. ..-+++.++.+|+.+.. ...++||
T Consensus 19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~--------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM--------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC--------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc--------cccCCceEeecccccchhhhhhhhhccCccee
Confidence 34588999999999999999988764 3478999998651 12357899999986532 2346799
Q ss_pred EEEecccccccCCH-----------HHHHHHHHHhccCCCEEEEEcC
Q 019684 178 RYVSAGSIEYWPDP-----------QRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 178 ~i~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|++-.......+. ...+.-+.++|++||.+++--.
T Consensus 91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 99997665543332 1567778899999999988543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=4.4e-06 Score=74.88 Aligned_cols=138 Identities=19% Similarity=0.195 Sum_probs=93.4
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCC-
Q 019684 94 TEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDL- 169 (337)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~- 169 (337)
.+.+.+.+++.+.. .++.+|||+-||+|.++..+++. ..+|+|+|.++.+++.|++++. -.|++|+.+|.++.
T Consensus 197 ~e~l~~~v~~~~~~-~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~ 273 (358)
T d1uwva2 197 NQKMVARALEWLDV-QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 273 (358)
T ss_dssp HHHHHHHHHHHHTC-CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred hhHHHHHHHHhhcc-CCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhh
Confidence 34455555555544 36789999999999999999987 6899999999999999998743 35789999998652
Q ss_pred C---CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCC
Q 019684 170 P---FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGF 246 (337)
Q Consensus 170 ~---~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 246 (337)
. .....+|+|+..--=.-. .++++.+.+. +|.-.++++.. +.. + ..++ ..|.+.||
T Consensus 274 ~~~~~~~~~~d~vilDPPR~G~---~~~~~~l~~~-~~~~ivYVSCn--p~T-l-------------aRDl-~~l~~~gy 332 (358)
T d1uwva2 274 TKQPWAKNGFDKVLLDPARAGA---AGVMQQIIKL-EPIRIVYVSCN--PAT-L-------------ARDS-EALLKAGY 332 (358)
T ss_dssp SSSGGGTTCCSEEEECCCTTCC---HHHHHHHHHH-CCSEEEEEESC--HHH-H-------------HHHH-HHHHHTTC
T ss_pred hhhhhhhccCceEEeCCCCccH---HHHHHHHHHc-CCCEEEEEeCC--HHH-H-------------HHHH-HHHHHCCC
Confidence 2 234669999863111111 2466666653 66666666532 111 1 1122 24567899
Q ss_pred cEEEEEEcC
Q 019684 247 KDVQLKRIG 255 (337)
Q Consensus 247 ~~v~~~~~~ 255 (337)
++.++..+.
T Consensus 333 ~l~~i~~~D 341 (358)
T d1uwva2 333 TIARLAMLD 341 (358)
T ss_dssp EEEEEEEEC
T ss_pred eEeEEEEEe
Confidence 999888875
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.40 E-value=1.2e-06 Score=77.14 Aligned_cols=130 Identities=14% Similarity=0.097 Sum_probs=94.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCCCCCCCccEEEe---
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFPTDYADRYVS--- 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~fD~i~~--- 181 (337)
.+|.+|||+++|.|.=+..++.... ...++++|.++.-+...+++. ...++.....|...++..+..||.|++
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccc
Confidence 4789999999999999888887653 578999999999888877653 335677777777666666678999997
Q ss_pred ---cccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHH
Q 019684 182 ---AGSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (337)
Q Consensus 182 ---~~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (337)
..++..-++. .+++.++.+.|||||+++.++...... .+.+.+...|+
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e-------------ENE~VV~~~L~ 261 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE-------------ENEFVIQWALD 261 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-------------GTHHHHHHHHH
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH-------------hHHHHHHHHHh
Confidence 2222222221 168999999999999998887764432 14566777888
Q ss_pred hCCCcEEEE
Q 019684 243 KAGFKDVQL 251 (337)
Q Consensus 243 ~aGF~~v~~ 251 (337)
+.+|+.+.+
T Consensus 262 ~~~~~~~~~ 270 (313)
T d1ixka_ 262 NFDVELLPL 270 (313)
T ss_dssp HSSEEEECC
T ss_pred cCCCEEeec
Confidence 888776544
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.28 E-value=6.4e-07 Score=75.28 Aligned_cols=100 Identities=13% Similarity=0.008 Sum_probs=68.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhh----CCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~ 181 (337)
++.+|||||++.|..+..++.. .+.++++++|+++........ ...+++++++|..+.. +....+|.|+.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfI 157 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--DMENITLHQGDCSDLTTFEHLREMAHPLIFI 157 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--GCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--cccceeeeecccccHHHHHHHHhcCCCEEEE
Confidence 5689999999999887766643 246899999997654332222 2367999999985532 33456888887
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-.. |+.......+ ++...|+|||++++.+.
T Consensus 158 D~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 158 DNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp ESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred cCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 543 3322222223 46689999999998875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=5.5e-06 Score=71.78 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=88.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCC-CCCCCccEEEe---
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLP-FPTDYADRYVS--- 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~-~~~~~fD~i~~--- 181 (337)
.++.+|||+++|.|.=+..+++.....+++++|+++.-+...+++. ...++.....|..... ...+.||.|++
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 4789999999999999999998866789999999998887777653 2234444444433221 33467999998
Q ss_pred ---cccccccCCH----------------HHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHH
Q 019684 182 ---AGSIEYWPDP----------------QRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQ 242 (337)
Q Consensus 182 ---~~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (337)
..++..-++. .++|+++.+.|||||+|+.++....... +.+.+...|+
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~E-------------NE~vv~~~l~ 247 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEE-------------NSLQIKAFLQ 247 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGG-------------THHHHHHHHH
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhh-------------CHHHHHHHHH
Confidence 2333322331 2689999999999999998877654321 4455666677
Q ss_pred h-CCCcE
Q 019684 243 K-AGFKD 248 (337)
Q Consensus 243 ~-aGF~~ 248 (337)
+ .+|+.
T Consensus 248 ~~~~~~~ 254 (284)
T d1sqga2 248 RTADAEL 254 (284)
T ss_dssp HCTTCEE
T ss_pred hCCCcEE
Confidence 6 35654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=3.3e-06 Score=72.70 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=64.6
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCCCCCCC
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDAEDLPF 171 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~ 171 (337)
.+.+.+++.+... +++.|||||+|+|.++..+++. +.+|+++|+++.+++..++.... .+++++.+|+....+
T Consensus 8 ~i~~kIv~~~~~~-~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 8 LIINSIIDKAALR-PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHHTCCC-TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHhCCC-CCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 3555566666553 7889999999999999999998 67999999999999999876433 479999999977654
Q ss_pred CCCCccEEEec
Q 019684 172 PTDYADRYVSA 182 (337)
Q Consensus 172 ~~~~fD~i~~~ 182 (337)
+. ++.|+++
T Consensus 85 ~~--~~~vV~N 93 (278)
T d1zq9a1 85 PF--FDTCVAN 93 (278)
T ss_dssp CC--CSEEEEE
T ss_pred hh--hhhhhcc
Confidence 33 4566654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=2.3e-06 Score=72.76 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=58.6
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC-CCCeEEEEcCCCCCC
Q 019684 96 DMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIVEGDAEDLP 170 (337)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~ 170 (337)
.+.+.+++.+.. .+++.|||||||+|.++..+++. +.+|+++|+++.+++..+++.. ..+++++.+|+.+.+
T Consensus 8 ~~~~~Iv~~~~~-~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 8 FVIDSIVSAINP-QKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCC-CTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCC-CCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc
Confidence 344555555554 37889999999999999999988 6799999999999999987643 367999999997754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=8.7e-05 Score=64.25 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCeEEEEeCCHHHHHHHHhhC---CCCCeEEEEcCCCCCCCC---CCCccEEEe
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECKIVEGDAEDLPFP---TDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~---~~~fD~i~~ 181 (337)
.++.+|||+++|+|.-+..++... +..+++++|+++.-++..++++ .-.++.+...|...+... .+.||.|+.
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 478999999999999998888763 4579999999999888887653 346788888888654322 256999998
Q ss_pred c------ccccccCC-----------H-------HHHHHHHHHhccCCCEEEEEcCCCC
Q 019684 182 A------GSIEYWPD-----------P-------QRGIREAYRVLKLGGKACIIGPVYP 216 (337)
Q Consensus 182 ~------~~l~~~~~-----------~-------~~~l~~~~~~LkpgG~l~i~~~~~~ 216 (337)
. .++...++ . .+++..+. .|+|||.|+.++....
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 2 11111111 0 13455555 4799999888876644
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=3.9e-06 Score=75.46 Aligned_cols=100 Identities=21% Similarity=0.149 Sum_probs=77.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC------------------CCeEEEEcCCCCCC-
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------------KECKIVEGDAEDLP- 170 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------------~~~~~~~~d~~~~~- 170 (337)
++.+|||..||+|..++..+.+.+..+|+..|+|+..++.+++|... ..+.+.+.|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 56899999999999999888876777999999999999999987421 12445566653222
Q ss_pred CCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 171 FPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 171 ~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.....||+|... -+..+..++..+.+.++.||.|.++..
T Consensus 125 ~~~~~fDvIDiD----PfGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLD----PFGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEEC----CSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCC----CCCCcHHHHHHHHHHhccCCEEEEEec
Confidence 223569999854 355677899999999999999999844
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.92 E-value=9.7e-06 Score=74.33 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=95.8
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCC-------------CCeEEEEeCCHHHHHHHHhhC-----CCCC
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKE-----PLKE 158 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~-----~~~~ 158 (337)
+++.++..+.. .++.+|+|.+||+|.++..+.+... ...+.|+|+++.+...|+.+. ...+
T Consensus 150 Iv~~mv~ll~~-~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 150 LIQAMVDCINP-QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHHHHCC-CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred hhHhhheeccC-cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence 34444444433 3678999999999999988766431 135999999999999988652 1233
Q ss_pred eEEEEcCCCCCCCCCCCccEEEecccccccC----------------C-HHHHHHHHHHhccCCCEEEEEcCCCCchhHh
Q 019684 159 CKIVEGDAEDLPFPTDYADRYVSAGSIEYWP----------------D-PQRGIREAYRVLKLGGKACIIGPVYPTFWLS 221 (337)
Q Consensus 159 ~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~----------------~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 221 (337)
......|....+ ...+||+|+++--+.... + ...++..+.+.|+|||++.++-+.. .+.
T Consensus 229 ~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~---~L~ 304 (425)
T d2okca1 229 SPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN---VLF 304 (425)
T ss_dssp CSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH---HHH
T ss_pred ceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH---Hhh
Confidence 456677775432 346799999964432110 1 1258999999999999988875421 110
Q ss_pred hhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 222 RYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
. -.....+++.|-+.+ .+..+..++...+..
T Consensus 305 ~--------~~~~~~iR~~Ll~~~-~i~aIi~LP~~~F~~ 335 (425)
T d2okca1 305 E--------AGAGETIRKRLLQDF-NLHTILRLPTGIFYA 335 (425)
T ss_dssp C--------STHHHHHHHHHHHHE-EEEEEEECCSSSSSS
T ss_pred h--------hhhHHHHHHHHHHhc-chhHhhcCCcccccC
Confidence 0 001345666666543 455666776666544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.76 E-value=2.8e-05 Score=64.82 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC--CC-eEEEEc-CCCCCCCCCCCccEEEeccc
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KE-CKIVEG-DAEDLPFPTDYADRYVSAGS 184 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~-~~~~~~-d~~~~~~~~~~fD~i~~~~~ 184 (337)
.+..+|+|+|||.|.|+..++...+...+.|+|+--...+ ....... .+ +++... |+.. .+++..|.|+|..+
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm~ 141 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDIG 141 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECCC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccccccccchhhhhHHh--cCCCcCCEEEeeCC
Confidence 4778999999999999999998865678888888422110 0000000 12 344433 3333 34567999999865
Q ss_pred ccccCCHH-------HHHHHHHHhccCCCEEEEEcC
Q 019684 185 IEYWPDPQ-------RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 185 l~~~~~~~-------~~l~~~~~~LkpgG~l~i~~~ 213 (337)
- +-+++. ++++-+.+.|+|||.+++--.
T Consensus 142 e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 142 E-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp C-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred C-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 3 344442 567777899999999877533
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.50 E-value=0.00043 Score=61.11 Aligned_cols=146 Identities=15% Similarity=0.100 Sum_probs=92.4
Q ss_pred CCCEEEEEcCcccHHHHHHHh----------------hCCCCeEEEEeCCHHHHHHHHhhCCC-----CC--eEEEEcCC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVK----------------HVDAKNVTILDQSPHQLAKAKQKEPL-----KE--CKIVEGDA 166 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~----------------~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~--~~~~~~d~ 166 (337)
..-+|.|+||.+|..+..+.. ..|..+|..-|+-..-....=+.+.. .+ +.-+.+.+
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 346799999999987742211 12567888888765444333333211 12 33456777
Q ss_pred CCCCCCCCCccEEEecccccccCC---------------------------------HHHHHHHHHHhccCCCEEEEEcC
Q 019684 167 EDLPFPTDYADRYVSAGSIEYWPD---------------------------------PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 167 ~~~~~~~~~fD~i~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..--|++++.|++++.+++|++.. ...+|+.=.+-|+|||+++++..
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 665688999999999999998742 12578888889999999998743
Q ss_pred CCCc------------hhHhhhhhhh----------------hccCCCHHHHHHHHHhCC-CcEEEEEEcC
Q 019684 214 VYPT------------FWLSRYFADV----------------WMLFPKEEEYIEWFQKAG-FKDVQLKRIG 255 (337)
Q Consensus 214 ~~~~------------~~~~~~~~~~----------------~~~~~~~~~~~~~l~~aG-F~~v~~~~~~ 255 (337)
..+. ..+...+.+. ...+.+.++++..+++.| |++.+.+.+.
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~ 281 (359)
T d1m6ex_ 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE 281 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEE
T ss_pred ccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeee
Confidence 2211 0111111111 113478999999998866 6766665544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.43 E-value=5.9e-05 Score=59.68 Aligned_cols=97 Identities=19% Similarity=0.096 Sum_probs=66.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEc-CCCCC-CCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEG-DAEDL-PFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-d~~~~-~~~~~~fD~i~~~~~l 185 (337)
+++++||-+|+| .|.++..+++.. +++|+++|.+++.++.+++.... .++.. +-.+. ....+.||+|+....-
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~---~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGAD---HYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCS---EEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCc---EEeeccchHHHHHhhhcccceEEEEecC
Confidence 489999999998 678888888774 78999999999999999987532 22221 11111 1123469988864332
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+-. .+....+.|+|+|++++...
T Consensus 102 ~~~~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 102 LTDI----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp STTC----CTTTGGGGEEEEEEEEECCC
T ss_pred Cccc----hHHHHHHHhhccceEEEecc
Confidence 2211 24457899999999998754
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=6.6e-05 Score=70.46 Aligned_cols=152 Identities=13% Similarity=0.023 Sum_probs=89.9
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhC----C--------------CCeEEEEeCCHHHHHHHHhhCCCC-
Q 019684 97 MRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHV----D--------------AKNVTILDQSPHQLAKAKQKEPLK- 157 (337)
Q Consensus 97 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~----~--------------~~~v~gvD~s~~~~~~a~~~~~~~- 157 (337)
+++.++..+.. .++.+|+|.+||+|.++..+.+.. . ...++|+|+++.+...|+.+..-.
T Consensus 152 Iv~~mv~ll~~-~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 152 LIKTIIHLLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hhHhhhhcccC-ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 33333443333 367899999999999998765532 1 126899999999999988653111
Q ss_pred -------CeEEEEcCCCCC-CCCCCCccEEEeccccccc-------------CC-HHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 158 -------ECKIVEGDAEDL-PFPTDYADRYVSAGSIEYW-------------PD-PQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 158 -------~~~~~~~d~~~~-~~~~~~fD~i~~~~~l~~~-------------~~-~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
+..+...+.... .....+||+|+++--+..- .+ .-.++..+.+.|+|||++.++.+..
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence 112334443221 1234579999995433211 11 1258999999999999998875421
Q ss_pred CchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcCcccccc
Q 019684 216 PTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRG 261 (337)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 261 (337)
.+.. -.....+++.|-+.+ .+..+..++...|.+
T Consensus 311 ---~Lf~--------~~~~~~iR~~Ll~~~-~i~aII~LP~~~F~~ 344 (524)
T d2ar0a1 311 ---VLFE--------GGKGTDIRRDLMDKC-HLHTILRLPTGIFYA 344 (524)
T ss_dssp ---HHHC--------CTHHHHHHHHHHHHE-EEEEEEECCSSCSSS
T ss_pred ---Hhhh--------hhhhHHHHHHHHHcC-CceEEEECCCCcCCC
Confidence 1100 001234555555443 455666676655544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.43 E-value=0.0007 Score=53.15 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---------CCCCCccE
Q 019684 109 NRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---------~~~~~fD~ 178 (337)
+++++||-+||| .|.++..+++.. +++|+++|.++.-++.+++... ...+...+..+.. ...+.+|+
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga--~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~ 101 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA--DVTLVVDPAKEEESSIIERIRSAIGDLPNV 101 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC--SEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCC--cEEEeccccccccchhhhhhhcccccCCce
Confidence 478999999998 577888888775 6899999999999999997643 2222222111110 11245898
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+-.. .-...++.+.+.++|+|++++....
T Consensus 102 vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 102 TIDCS------GNEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EEECS------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eeecC------CChHHHHHHHHHHhcCCceEEEecC
Confidence 87432 2346788899999999999987643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.34 E-value=0.00064 Score=54.92 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=73.0
Q ss_pred cccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCC
Q 019684 103 EPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTD 174 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~ 174 (337)
+...+ +++++||-+|||. |..+..+++..+..+|+++|.++.-++.|++... +.......... ....
T Consensus 19 ~~a~v-~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga----~~~~~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 19 VTAGV-GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF----EIADLSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp HHTTC-CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----EEEETTSSSCHHHHHHHHHSSS
T ss_pred HHhCC-CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc----cEEEeCCCcCHHHHHHHHhCCC
Confidence 33444 4899999999998 7777888877767799999999999999997632 22222111110 1234
Q ss_pred CccEEEeccccc------c---cCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 175 YADRYVSAGSIE------Y---WPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 175 ~fD~i~~~~~l~------~---~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+|+++-..... + .......++.+.+.++|||++.+...
T Consensus 94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 589888543211 1 11234789999999999999998864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.24 E-value=0.00012 Score=58.60 Aligned_cols=96 Identities=23% Similarity=0.257 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC--------C-CCCCCccE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL--------P-FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~--------~-~~~~~fD~ 178 (337)
++|++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++.... .++...-.+. . .....+|+
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~~i~~~~~~~g~Dv 103 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD---LTLNRRETSVEERRKAIMDITHGRGADF 103 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccccce---EEEeccccchHHHHHHHHHhhCCCCceE
Confidence 4789999999984 88888888886434899999999999999876431 1221111110 0 11235999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+-...- ...++...+.|+|||++++...
T Consensus 104 vid~vG~------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 104 ILEATGD------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp EEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EeecCCc------hhHHHHHHHHhcCCCEEEEEee
Confidence 8843211 2467888999999999988753
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=0.00039 Score=60.81 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=57.2
Q ss_pred HHHHHHhccccCCC-----CCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC
Q 019684 95 EDMRDDALEPADLS-----NRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED 168 (337)
Q Consensus 95 ~~~~~~~l~~~~~~-----~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 168 (337)
+.+.+.+++.+.+. ..+..|||||+|.|.++..+.+.....+|+++|+++...+..++.....+++++.+|+..
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 34445554443322 256789999999999999998863235899999999999999988777789999999864
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.16 E-value=0.00037 Score=55.30 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=71.9
Q ss_pred cccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCC
Q 019684 103 EPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTD 174 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~ 174 (337)
+...+ +++++||=+|||. |..+..+++..+..+|+.+|.++.-++.+++.... .++...-.+.. ...+
T Consensus 22 ~~a~v-~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 22 NTAKV-TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT---DCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp TTSCC-CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHHHTS
T ss_pred HhhCC-CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC---cccCCccchhhhhhhHhhhhcC
Confidence 33444 4889999999997 88999999987656899999999999999986431 12211111101 1234
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccCC-CEEEEEcCCC
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKLG-GKACIIGPVY 215 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~~ 215 (337)
.+|+++-.. .-...+.+..+.++|| |++++.....
T Consensus 98 G~d~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG~~~ 133 (174)
T d1e3ia2 98 GVDYSLDCA------GTAQTLKAAVDCTVLGWGSCTVVGAKV 133 (174)
T ss_dssp CBSEEEESS------CCHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred CCcEEEEec------ccchHHHHHHHHhhcCCeEEEecCCCC
Confidence 589887422 2346789999999997 9999886543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.13 E-value=0.00011 Score=58.39 Aligned_cols=101 Identities=23% Similarity=0.224 Sum_probs=69.6
Q ss_pred cccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCC
Q 019684 103 EPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDY 175 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~ 175 (337)
+...+ +++++||=+|||. |..+..+++..+..+|+++|.++.-++.+++.... .++..+-+++. .....
T Consensus 21 ~~a~~-~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~---~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 21 ELADI-EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT---DILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp HHTTC-CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS---EEECGGGSCHHHHHHHHTTTSC
T ss_pred HHhCC-CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc---ccccccchhHHHHHHHHhhccC
Confidence 33444 4789999999996 88888888886445899999999999999876431 22211111110 12245
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
+|+|+-.-.. ...+++..+.++|+|++++...
T Consensus 97 ~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 97 VDRVIMAGGG------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred cceEEEccCC------HHHHHHHHHHHhcCCEEEEEee
Confidence 9998753322 2467888999999999998754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00044 Score=54.53 Aligned_cols=97 Identities=21% Similarity=0.238 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADRY 179 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~i 179 (337)
+++++||=+|||. |..+..+++..+..+|+++|.++.-++.|++.... .++..+-++.. .....+|+|
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~---~~~~~~~~~~~~~~~~~~~~~g~g~Dvv 101 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD---LVLQISKESPQEIARKVEGQLGCKPEVT 101 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS---EEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc---ccccccccccccccccccccCCCCceEE
Confidence 4789999999986 66667777776545899999999999999876331 12222211110 012358988
Q ss_pred EecccccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 180 VSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 180 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+-.. .-...++...+.+++||++++....
T Consensus 102 id~~------G~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 102 IECT------GAEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp EECS------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred Eecc------CCchhHHHHHHHhcCCCEEEEEecC
Confidence 7532 2245788999999999999997654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.04 E-value=0.0015 Score=51.44 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=69.7
Q ss_pred ccccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-----CCCCCC
Q 019684 102 LEPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-----PFPTDY 175 (337)
Q Consensus 102 l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~ 175 (337)
++.... +++++||=+|||. |..+..+++..+...++++|.++.-++.+++... ..++..+-++. ...++.
T Consensus 21 ~~~~~~-~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga---~~~i~~~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 21 INALKV-TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA---THVINSKTQDPVAAIKEITDGG 96 (174)
T ss_dssp HTTTCC-CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC---SEEEETTTSCHHHHHHHHTTSC
T ss_pred HHhhCC-CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC---eEEEeCCCcCHHHHHHHHcCCC
Confidence 333444 4899999999985 5566777777666678899999999999987643 12333222221 123456
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
||+|+-.. .-...++.+.+.++|+|++++...
T Consensus 97 ~D~vid~~------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 97 VNFALEST------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEEEECS------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred CcEEEEcC------CcHHHHHHHHhcccCceEEEEEee
Confidence 99888432 224677889999999999998753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.92 E-value=0.0004 Score=54.87 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~i~~~ 182 (337)
+++++||-+|+|. |..+..+++.....+++++|.+++-++.+++.... .++..+-+... .....+|+|+-.
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~---~~i~~~~~~~~~~~~~~~~~g~d~vid~ 107 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD---HVVDARRDPVKQVMELTRGRGVNVAMDF 107 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS---EEEETTSCHHHHHHHHTTTCCEEEEEES
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc---eeecCcccHHHHHHHhhCCCCceEEEEe
Confidence 4789999999985 56667777766667899999999999999876431 23322211110 123458988843
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.. -...++...+.|++||++++...
T Consensus 108 ~g------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 108 VG------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp SC------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred cC------cchHHHHHHHHHhCCCEEEEEeC
Confidence 22 23568889999999999998764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.85 E-value=0.00055 Score=53.55 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CCCCCccEEEec
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVSA 182 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~i~~~ 182 (337)
+++++||=+|+|. |..+..+++.. +.+|+++|.++..++.+++.... .++..+-++.. ...+.+|.|.+.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGAS---LTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred CCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCcc---ccccccchhHHHHHHHhhcCCccccccc
Confidence 4789999999985 77777788876 68999999999999999876431 22322211110 112323343322
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
. . ...++...+.|+|||++++...
T Consensus 102 ~------~-~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 102 V------S-NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp S------C-HHHHHHHHTTEEEEEEEEECCC
T ss_pred c------c-chHHHHHHHHhcCCcEEEEEEe
Confidence 1 1 3567889999999999998754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.85 E-value=0.00053 Score=53.90 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=66.8
Q ss_pred CCCCEEEEEcC-c-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 019684 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~ 180 (337)
+++++||=+|| | .|..+..+++..+..+|+++|.++.-++.+++.... .++..+-.+.. ...+.||+|+
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~~d~vi 102 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD---YVINASMQDPLAEIRRITESKGVDAVI 102 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc---eeeccCCcCHHHHHHHHhhcccchhhh
Confidence 47899999997 3 567777777766567999999999999999876431 22322222210 1234599888
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
-.. .-...++.+.+.++|||++++...
T Consensus 103 d~~------g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 103 DLN------NSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp ESC------CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred ccc------ccchHHHhhhhhcccCCEEEEecc
Confidence 532 234567778999999999998754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0013 Score=51.46 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=67.4
Q ss_pred ccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 019684 104 PADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAED-LPFPTDYADRYVS 181 (337)
Q Consensus 104 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~fD~i~~ 181 (337)
...+ +++++||=+|||. |.++..+++.. +++++++|.+++-.+.+++.... .++...-.+ .....+.+|+++-
T Consensus 25 ~~~~-~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad---~~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 25 HWQA-GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGAD---EVVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp HTTC-CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCS---EEEETTCHHHHHTTTTCEEEEEE
T ss_pred HhCC-CCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCc---EEEECchhhHHHHhcCCCceeee
Confidence 3344 4899999999984 78888888875 78889999999988888876431 222211111 1122346998875
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...-. ..++...+.++|+|++++...
T Consensus 100 ~~g~~------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 100 TVAAP------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred eeecc------hhHHHHHHHHhcCCEEEEecc
Confidence 43221 246678899999999998754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.0012 Score=51.95 Aligned_cols=92 Identities=12% Similarity=0.197 Sum_probs=66.6
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCCCCccE
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPTDYADR 178 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~~~fD~ 178 (337)
+++++||-.|+ |.|..+..+++.. ++++++++-+++..+.+++... . .++ |..+.. ...+.+|+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga-~--~vi--~~~~~~~~~~i~~~t~~~g~d~ 100 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGA-H--EVF--NHREVNYIDKIKKYVGEKGIDI 100 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEE--ETTSTTHHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCc-c--ccc--ccccccHHHHhhhhhccCCceE
Confidence 48899999996 5788888888885 6899999999998898887543 1 122 222211 22456999
Q ss_pred EEecccccccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 179 YVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 179 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
|+.... ...+++..+.|+|+|+++....
T Consensus 101 v~d~~g-------~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 101 IIEMLA-------NVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp EEESCH-------HHHHHHHHHHEEEEEEEEECCC
T ss_pred Eeeccc-------HHHHHHHHhccCCCCEEEEEec
Confidence 886421 2468889999999999998743
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.41 E-value=0.00072 Score=52.79 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=72.7
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEeccccccc
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYW 188 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~ 188 (337)
++.+|+=||+|. |..+...+... +++|+.+|.+++.++..+.... .+++....+-+.+...-...|+|+..-.+.--
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~-~~~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc-ccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 568999999995 77788888776 7999999999999988876543 34555544432222112358999987766555
Q ss_pred CCHHHHHHHHHHhccCCCEEEE
Q 019684 189 PDPQRGIREAYRVLKLGGKACI 210 (337)
Q Consensus 189 ~~~~~~l~~~~~~LkpgG~l~i 210 (337)
+.|.-+-+++.+.+|||..++=
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEE
T ss_pred ccCeeecHHHHhhcCCCcEEEE
Confidence 5566677889999999998863
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.38 E-value=0.0017 Score=54.17 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=58.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC---C---------CCCeEEEEcCCCC-CCCCCCCcc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P---------LKECKIVEGDAED-LPFPTDYAD 177 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~---~---------~~~~~~~~~d~~~-~~~~~~~fD 177 (337)
..+|||.-||.|..+..++.. +++|+++|-++.+....++.. . ..+++++.+|..+ +.-...+||
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 358999999999999999998 789999999997655544321 1 1368999999743 333345799
Q ss_pred EEEecccccccC
Q 019684 178 RYVSAGSIEYWP 189 (337)
Q Consensus 178 ~i~~~~~l~~~~ 189 (337)
+|+.--++.+-.
T Consensus 167 vIYlDPMFp~~~ 178 (250)
T d2oyra1 167 VVYLDPMFPHKQ 178 (250)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEECCCCcccc
Confidence 999987776543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.28 E-value=0.0039 Score=49.01 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=64.4
Q ss_pred cccCCCCCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCC
Q 019684 103 EPADLSNRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTD 174 (337)
Q Consensus 103 ~~~~~~~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~ 174 (337)
+.... +++++||=+|||. |..+..+++..+..+|+++|.++.-++.+++.... .++...-.+.. ..++
T Consensus 21 ~~a~~-~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~---~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 21 NTAKV-TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT---ECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp TTTCC-CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHHTTS
T ss_pred HhhCC-CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc---EEEcCCCchhHHHHHHHHhcCC
Confidence 33444 4899999999985 56666677776567899999999999999976432 12211111111 1234
Q ss_pred CccEEEecccccccCCHHHHHHHHHHhccC-CCEEEEEcC
Q 019684 175 YADRYVSAGSIEYWPDPQRGIREAYRVLKL-GGKACIIGP 213 (337)
Q Consensus 175 ~fD~i~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~ 213 (337)
.+|+|+-.- . ....+.+....+++ +|.+++...
T Consensus 97 G~d~vid~~-----g-~~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 97 GVDYAVECA-----G-RIETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp CBSEEEECS-----C-CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCcEEEEcC-----C-CchHHHHHHHHHHHhcCceEEEEE
Confidence 588887432 2 23455666666654 699988754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.17 E-value=0.0022 Score=49.88 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~~ 181 (337)
+++++||=.|+|+ |..+..+++. .+.+|+++|.++.-++.+++... +.+.....+.. ...+ +|.++.
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga----~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 99 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGA----DLVVNPLKEDAAKFMKEKVGG-VHAAVV 99 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTC----SEEECTTTSCHHHHHHHHHSS-EEEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCc----ceecccccchhhhhcccccCC-CceEEe
Confidence 4789999999986 5566666666 46799999999999999987532 22222221111 1223 444442
Q ss_pred cccccccCCHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 182 AGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
..+ . ...+....+.|+|||++++.....
T Consensus 100 ~~~-----~-~~~~~~a~~~l~~~G~i~~~g~~~ 127 (168)
T d1rjwa2 100 TAV-----S-KPAFQSAYNSIRRGGACVLVGLPP 127 (168)
T ss_dssp SSC-----C-HHHHHHHHHHEEEEEEEEECCCCS
T ss_pred ecC-----C-HHHHHHHHHHhccCCceEeccccc
Confidence 211 2 467899999999999999875443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.09 E-value=0.0042 Score=48.97 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEEe
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYVS 181 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~~ 181 (337)
+++++||=+|||. |..+..+++..+..+|+++|.+++-++.|++.....-+.. .|..... .....+|+++-
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~--~~~~~~~~~~~~~~~g~G~d~vi~ 105 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISP--KDSTKPISEVLSEMTGNNVGYTFE 105 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECG--GGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECc--cccchHHHHHHHHhccccceEEEE
Confidence 4899999999985 6777777887766899999999999999998754221111 1111110 12345888774
Q ss_pred cccccccCCHHHHHHHHHHhc-cCCCEEEEEcC
Q 019684 182 AGSIEYWPDPQRGIREAYRVL-KLGGKACIIGP 213 (337)
Q Consensus 182 ~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~~~ 213 (337)
. .... ..+.+....+ +++|++++...
T Consensus 106 ~-----~g~~-~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 106 V-----IGHL-ETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp C-----SCCH-HHHHHHHTTSCTTTCEEEECSC
T ss_pred e-----CCch-HHHHHHHHHhhcCCeEEEEEEc
Confidence 2 2223 3444444444 56699988754
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.76 E-value=0.0073 Score=51.68 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=49.6
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 156 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 156 (337)
.....+.+.++.... ++++.|||.-||+|..+...... +-+.+|+|++++.++.|+++...
T Consensus 234 ~kP~~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 234 RFPAKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CCCTHHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred cCchHHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHh
Confidence 344456666665543 58899999999999999987777 88999999999999999987653
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.56 E-value=0.011 Score=46.46 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=66.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEE----------EEcCCCCCC--C-----
Q 019684 110 RNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI----------VEGDAEDLP--F----- 171 (337)
Q Consensus 110 ~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----------~~~d~~~~~--~----- 171 (337)
++.+||=||+|. |..+...+... +++|+.+|.++..++..++.... .+++ ..+.+.++. +
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~-~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGK-FITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCE-ECCC-----------------------CCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcc-eEEEeccccccccccccchhhcCHHHHHHHH
Confidence 468999999995 77777777776 78999999999999999876431 1110 000111110 0
Q ss_pred -----CCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEE
Q 019684 172 -----PTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKAC 209 (337)
Q Consensus 172 -----~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 209 (337)
.-...|+|+..-.+.--+.|.-+-+++.+.+|||..++
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 01358999987776655666667788999999999886
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.33 E-value=0.015 Score=48.00 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=47.8
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC
Q 019684 93 WTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (337)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 154 (337)
.-..+.+.++.... .+|+.|||.=||+|..+....+. +-+.+|+|++++.++.|++++
T Consensus 197 kP~~L~~~lI~~~s--~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 197 KPRDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp CCHHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhC--CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH
Confidence 44556666665553 48899999999999999987777 789999999999999999764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.30 E-value=0.012 Score=45.93 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=65.9
Q ss_pred ccCCCCCCCEEEEEcCc-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCCC
Q 019684 104 PADLSNRNMLVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDY 175 (337)
Q Consensus 104 ~~~~~~~~~~VLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~ 175 (337)
...+ +++++||=.||| .|.++..+++......|+++|.++.-++.+++..... ++..+-.+.+ ...+.
T Consensus 23 ~~~~-~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~---~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 23 TAKL-EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE---CINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp TTCC-CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHTTSC
T ss_pred hhCC-CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE---EEeCCchhhHHHHHHHHHcCCC
Confidence 3344 489999999987 4667777777766678999999999999999875321 2211111111 12345
Q ss_pred ccEEEecccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 176 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 176 fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
+|+|+-.- -....++.+...+++||.+++.
T Consensus 99 ~D~vid~~------G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 99 VDYSFECI------GNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp BSEEEECS------CCHHHHHHHHHTBCTTTCEEEE
T ss_pred CcEeeecC------CCHHHHHHHHHhhcCCceeEEE
Confidence 99988532 2346788899999999877655
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.21 E-value=0.17 Score=42.82 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=84.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----C--CCCeEEEEcCCCCCC--------CCCCCcc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----P--LKECKIVEGDAEDLP--------FPTDYAD 177 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~--~~~~~~~~~d~~~~~--------~~~~~fD 177 (337)
..|+.+|||--.-...+ ...++.+++=+|. |++++.-++.+ . ..+..++..|+.+.+ +..+.-=
T Consensus 91 ~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 45677999986665544 2235678888997 77776554432 1 234677888886422 1122334
Q ss_pred EEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCCCchhHhh----hhh---------------hhhccCCCHHH
Q 019684 178 RYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVYPTFWLSR----YFA---------------DVWMLFPKEEE 236 (337)
Q Consensus 178 ~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----~~~---------------~~~~~~~~~~~ 236 (337)
++++-.++.+++.. .++++.+.+...||+.+++............ ... ..+....+..+
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAV 248 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCchhh
Confidence 66677788888654 5799999999999999988643322111000 000 00111223457
Q ss_pred HHHHHHhCCCcEEEE
Q 019684 237 YIEWFQKAGFKDVQL 251 (337)
Q Consensus 237 ~~~~l~~aGF~~v~~ 251 (337)
..++|+..||+....
T Consensus 249 ~~~~l~~~Gw~~~~~ 263 (297)
T d2uyoa1 249 VADWLNRHGWRATAQ 263 (297)
T ss_dssp HHHHHTTTTEEEEEE
T ss_pred HHHHHHhCCCEEEEe
Confidence 889999999986654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.20 E-value=0.013 Score=45.99 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=66.4
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCC-CCCCCCccEEEecccc
Q 019684 109 NRNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDL-PFPTDYADRYVSAGSI 185 (337)
Q Consensus 109 ~~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~i~~~~~l 185 (337)
+++++||=-|. |.|.+++.+++.. +++|+++.-|++-.+.+++.....-+.....+.+.. ....+.+|+|+-.-.-
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg 108 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG 108 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCc
Confidence 36888998885 5788999999885 899999999999999998764422122111111111 2234679988753221
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
..+.+..+.|+|||+++.....
T Consensus 109 -------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 109 -------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp -------TTHHHHHHTEEEEEEEEECSCC
T ss_pred -------hhHHHHHHHhCCCceEEEeecc
Confidence 2578899999999999987654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.90 E-value=0.0089 Score=46.97 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=64.5
Q ss_pred CCCCEEEEEc--CcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 019684 109 NRNMLVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~ 180 (337)
+++++||=.| .|.|..+..+++.. ++++++++-+++..+.+++... . ..+...-.++. .....||+|+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga-~--~vi~~~~~~~~~~v~~~t~~~g~d~v~ 99 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGV-E--YVGDSRSVDFADEILELTDGYGVDVVL 99 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCC-S--EEEETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccc-c--ccccCCccCHHHHHHHHhCCCCEEEEE
Confidence 4789999877 35688888888875 6899999888888888886532 1 12221111110 1235699999
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
.... . ..++++.+.|+|+|+++...
T Consensus 100 d~~g-----~--~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 100 NSLA-----G--EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp ECCC-----T--HHHHHHHHTEEEEEEEEECS
T ss_pred eccc-----c--hHHHHHHHHhcCCCEEEEEc
Confidence 6432 2 46788899999999998864
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.85 E-value=0.11 Score=40.03 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEE-cCCCCCC------CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVE-GDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~d~~~~~------~~~~~fD~i~ 180 (337)
+++++||=+|+|. |..+..+++.....+|+++|.+++-.+.+++.... ..+. .+..+.. ...+.+|+|+
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~G~D~vi 103 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT---ECVNPQDYKKPIQEVLTEMSNGGVDFSF 103 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe---eEEecCCchhHHHHHHHHHhcCCCCEEE
Confidence 4899999999964 55666777777678999999999999999886432 1221 1211110 2234699988
Q ss_pred ecccccccCCHHHHHHHHHHhccCC-CEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 212 (337)
-.... ...++.....+++| |.+++..
T Consensus 104 d~~G~------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 104 EVIGR------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp ECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred ecCCc------hhHHHHHHHHHhcCCcceEEec
Confidence 54332 35667778888887 5555543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.012 Score=46.08 Aligned_cols=93 Identities=10% Similarity=0.039 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCc--ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 019684 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~ 180 (337)
+++++||=.|+| .|..+..+++.. +++|+++|.|++-.+.+++.... ..+..+-+++. -....+|+|+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~---~vi~~~~~d~~~~v~~~t~g~g~d~v~ 102 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAW---QVINYREEDLVERLKEITGGKKVRVVY 102 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCe---EEEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 478999998665 578888888874 78999999999999999977532 12221111110 1245689887
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
-...- ..+......++|+|++++..
T Consensus 103 d~~g~-------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 103 DSVGR-------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp ECSCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred eCccH-------HHHHHHHHHHhcCCeeeecc
Confidence 54322 25678899999999987764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.71 E-value=0.025 Score=47.23 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=48.7
Q ss_pred cchHHHHHHhccccCCCCCCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC
Q 019684 92 HWTEDMRDDALEPADLSNRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 154 (337)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 154 (337)
..-..+.+.++.... .+++.|||.=||+|..+...... +-+.+|+|+++...+.|+++.
T Consensus 191 ~kP~~L~~~~I~~~s--~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri 249 (279)
T d1eg2a_ 191 QKPAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQL 249 (279)
T ss_dssp CCCHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhc--CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHH
Confidence 344556666666543 48999999999999999988887 789999999999999999774
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.51 E-value=0.0054 Score=47.97 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCCCEEEEEcC-c-ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 019684 109 NRNMLVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP---FPTDYADRYVSAG 183 (337)
Q Consensus 109 ~~~~~VLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~i~~~~ 183 (337)
+++++||=.|. | .|..+..+++.. +++|++++.+++..+.+++..... .+ |..+.. -..+.+|+|+-..
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa~~---~i--~~~~~~~~~~~~~g~D~v~d~~ 99 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEE---AA--TYAEVPERAKAWGGLDLVLEVR 99 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSE---EE--EGGGHHHHHHHTTSEEEEEECS
T ss_pred CCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccccccce---ee--ehhhhhhhhhcccccccccccc
Confidence 48899999884 4 478888888885 689999999999888888754321 11 221111 1224599988532
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. + .+.+..+.|+|+|+++...
T Consensus 100 --G--~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 100 --G--K----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp --C--T----THHHHHTTEEEEEEEEEC-
T ss_pred --c--h----hHHHHHHHHhcCCcEEEEe
Confidence 1 1 3567889999999998764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.48 E-value=0.11 Score=39.74 Aligned_cols=93 Identities=13% Similarity=0.023 Sum_probs=60.6
Q ss_pred EEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCC
Q 019684 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 113 ~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~ 190 (337)
+|+=||||. |.++..+.+.....+|+|+|.+++.++.+++... +.....+... ..+...|+|+...-.. .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~---~~~~~~~~~~--~~~~~~dlIila~p~~---~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---IDEGTTSIAK--VEDFSPDFVMLSSPVR---T 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---CSEEESCGGG--GGGTCCSEEEECSCHH---H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc---chhhhhhhhh--hhccccccccccCCch---h
Confidence 588899985 4466677666445799999999999999987532 1112222221 1233579888643221 3
Q ss_pred HHHHHHHHHHhccCCCEEEEEcC
Q 019684 191 PQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 191 ~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
...++.++...++++..+.-...
T Consensus 75 ~~~vl~~l~~~~~~~~ii~d~~s 97 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVTDQGS 97 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEEECCS
T ss_pred hhhhhhhhhcccccccccccccc
Confidence 35788999999998876654433
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.14 E-value=0.04 Score=42.68 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-------CCCCCccEEE
Q 019684 109 NRNMLVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~i~ 180 (337)
+++++||=+|+|. |..+..++......+|+++|.+++-++.+++.... .++..+-++.. ...+.+|+|+
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd---~~in~~~~~~~~~~~~~~~~~~G~d~vi 103 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT---DFVNPNDHSEPISQVLSKMTNGGVDFSL 103 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC---EEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc---EEEcCCCcchhHHHHHHhhccCCcceee
Confidence 4899999999987 45555566666677999999999999999986432 22221111111 1124588887
Q ss_pred ecccccccCCHHHHHHHHHHhccCC-CEEEEE
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLG-GKACII 211 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 211 (337)
-... ....+......+++| |.+++.
T Consensus 104 d~~G------~~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 104 ECVG------NVGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp ECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred eecC------CHHHHHHHHHHhhCCCcceeEE
Confidence 4332 234566777777666 555444
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.36 E-value=0.2 Score=38.11 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=57.6
Q ss_pred CEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
++|.=||+|. +.++..+.+. +.+|+++|.+++.++.+++... +.....+.+.+ ...|+|+..--. .
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~---~~~~~~~~~~~----~~~DiIilavp~---~ 68 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL---VDEAGQDLSLL----QTAKIIFLCTPI---Q 68 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS---CSEEESCGGGG----TTCSEEEECSCH---H
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhc---cceeeeecccc----cccccccccCcH---h
Confidence 3677888883 4566666666 7899999999999998887532 11122222221 358998863321 2
Q ss_pred CHHHHHHHHHHhccCCCEEEEE
Q 019684 190 DPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
...++++++...++++-.++-.
T Consensus 69 ~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 69 LILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HHHHHHHHHGGGSCTTCEEEEC
T ss_pred hhhhhhhhhhhhcccccceeec
Confidence 2357889998888888866544
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.25 E-value=0.033 Score=43.59 Aligned_cols=93 Identities=18% Similarity=0.019 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCc--ccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 019684 109 NRNMLVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 109 ~~~~~VLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~ 180 (337)
+++++||=.|++ .|..+..+++.. +++|++++-+++..+.+++.... ..+..+-++.. ...+.+|+|+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga~---~vi~~~~~~~~~~~~~~~~~~Gvd~v~ 103 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFD---AAFNYKTVNSLEEALKKASPDGYDCYF 103 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCS---EEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhhh---hhcccccccHHHHHHHHhhcCCCceeE
Confidence 489999987874 577888888885 78999999999999888876431 12222212110 1234599987
Q ss_pred ecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 181 SAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 181 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
-. +. .+.+++..+.|+|||.+++..
T Consensus 104 D~-----vG--~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 104 DN-----VG--GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp ES-----SC--HHHHHHHGGGEEEEEEEEECC
T ss_pred Ee-----cC--chhhhhhhhhccCCCeEEeec
Confidence 42 22 357889999999999999864
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.27 Score=41.73 Aligned_cols=129 Identities=13% Similarity=0.126 Sum_probs=77.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCC--e-EEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC---CCCCccEEEeccc
Q 019684 111 NMLVVDVGGGTGFTTLGIVKHVDAK--N-VTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF---PTDYADRYVSAGS 184 (337)
Q Consensus 111 ~~~VLDiGcG~G~~~~~l~~~~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~---~~~~fD~i~~~~~ 184 (337)
+.+|+|+-||.|.+...+... +. + +.++|+++.+.+..+.+.. +..++.+|+.++.. +...+|+++...-
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a--G~~~~~~~a~E~~~~a~~~~~~n~~--~~~~~~~di~~~~~~~~~~~~~Dll~ggpP 77 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES--CIPAQVVAAIDVNTVANEVYKYNFP--HTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH--TCSEEEEEEECCCHHHHHHHHHHCT--TSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CCEEEEcCcCccHHHHHHHHc--CCCCeEEEEEECCHHHHHHHHHHCC--CCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence 368999999999998888766 43 4 5689999999998888764 45567788876542 2235899987432
Q ss_pred cccc---------CCHH-HHHHHHHHhc-----cCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEE
Q 019684 185 IEYW---------PDPQ-RGIREAYRVL-----KLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDV 249 (337)
Q Consensus 185 l~~~---------~~~~-~~l~~~~~~L-----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 249 (337)
-..+ .|.. .++-++.+++ ||. +++.|....-.. . ...+.+.+.|++.|+.+.
T Consensus 78 Cq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~~-~----------~~~~~i~~~l~~~GY~v~ 144 (343)
T d1g55a_ 78 CQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEV-S----------STRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp ------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGG-S----------HHHHHHHHHHHHTTEEEE
T ss_pred cccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCccc-c----------hhhHHHHhhhhccccccc
Confidence 2222 2222 3445555554 453 333333222110 0 123567889999999864
Q ss_pred EEEEcCcc
Q 019684 250 QLKRIGPK 257 (337)
Q Consensus 250 ~~~~~~~~ 257 (337)
...+...
T Consensus 145 -~~vlna~ 151 (343)
T d1g55a_ 145 -EFLLSPT 151 (343)
T ss_dssp -EEEECGG
T ss_pred -eeeeecc
Confidence 3444433
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.09 E-value=0.045 Score=42.35 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=65.6
Q ss_pred CCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCC--CCC-CCCCCCccEEEeccc
Q 019684 110 RNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDA--EDL-PFPTDYADRYVSAGS 184 (337)
Q Consensus 110 ~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~--~~~-~~~~~~fD~i~~~~~ 184 (337)
++.+||=-|+ |.|.++..+++.. +++|+++.-|++-.+.+++.....-+. ..|. +.. ....+.+|+|+-.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGad~vi~--~~~~~~~~~~~~~~~gvd~vid~-- 97 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVIS--REDVYDGTLKALSKQQWQGAVDP-- 97 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEE--HHHHCSSCCCSSCCCCEEEEEES--
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcccceEe--ccchhchhhhcccCCCceEEEec--
Confidence 5667887773 5788999999986 789999999998888888775422111 1111 111 1234569987743
Q ss_pred ccccCCHHHHHHHHHHhccCCCEEEEEcCC
Q 019684 185 IEYWPDPQRGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 185 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
+- ...+.+..+.|+|+|++++....
T Consensus 98 ---vg--g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 98 ---VG--GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp ---CC--THHHHHHHTTEEEEEEEEECCCS
T ss_pred ---Cc--HHHHHHHHHHhccCceEEEeecc
Confidence 22 24778899999999999987544
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.03 E-value=0.16 Score=44.32 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-------CCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCccEEEe
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVS 181 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~-------~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD~i~~ 181 (337)
+..+|+|+|+|+|.++..+.... ...+++.+|.|+...+.-+++... .++.+ ..++++++. ..-+|++
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w-~~~~~~~~~---~~g~iia 154 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHW-HDSFEDVPE---GPAVILA 154 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEE-ESSGGGSCC---SSEEEEE
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccccccee-ccChhhccc---CCeEEEe
Confidence 44689999999999998876643 235789999999987777766553 23443 344444431 1356777
Q ss_pred cccccccC
Q 019684 182 AGSIEYWP 189 (337)
Q Consensus 182 ~~~l~~~~ 189 (337)
+.++..+|
T Consensus 155 NE~fDAlP 162 (365)
T d1zkda1 155 NEYFDVLP 162 (365)
T ss_dssp ESSGGGSC
T ss_pred cccCcccc
Confidence 76666665
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=92.46 E-value=2.5 Score=35.18 Aligned_cols=126 Identities=12% Similarity=-0.057 Sum_probs=76.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeE-EEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEecccccc
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNV-TILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSAGSIEY 187 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~~~l~~ 187 (337)
.+.+|||+-||.|.+...+.+. +.++ .++|+++.+++..+.|.... .++|+.++... -..+|+++...--..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~~----~~~Di~~~~~~~~~~~Dll~ggpPCq~ 83 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK----PEGDITQVNEKTIPDHDILCAGFPCQA 83 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC----CBSCGGGSCGGGSCCCSEEEEECCCTT
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCCC----CcCchhcCchhhcceeeeeecccccch
Confidence 5789999999999999998776 6665 45899999999988876422 24777665422 235899987322111
Q ss_pred ---------cCCHH----HHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEE
Q 019684 188 ---------WPDPQ----RGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQL 251 (337)
Q Consensus 188 ---------~~~~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 251 (337)
..|.. ..+-++.+.++|. ++++. ....-... . .....+.+.+.|++.|+.+...
T Consensus 84 fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~-~~~lE-NV~~~~~~-~-------~~~~~~~i~~~l~~lGY~~~~~ 150 (327)
T d2c7pa1 84 FSISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFME-NVKNFASH-D-------NGNTLEVVKNTMNELDYSFHAK 150 (327)
T ss_dssp TCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEE-EEGGGGTG-G-------GGHHHHHHHHHHHHTTBCCEEE
T ss_pred hhhhhhhcCCcccchhHHHHHHHHHhccCCc-EEecc-cchhhhhh-c-------cchhhHHhhhHHHhcCCcceee
Confidence 11221 2333445567774 33333 22111000 0 0112467788999999976544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.79 E-value=1.5 Score=31.51 Aligned_cols=88 Identities=14% Similarity=0.208 Sum_probs=56.5
Q ss_pred CEEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecccc
Q 019684 112 MLVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSI 185 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~l 185 (337)
++|+=+|+| .++..+++.+ .+.+|+.+|.+++.++.+.+.. +..++.+|..+.. ..-+..|.+++.
T Consensus 1 M~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~--- 72 (132)
T d1lssa_ 1 MYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---DALVINGDCTKIKTLEDAGIEDADMYIAV--- 72 (132)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEEC---
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh---hhhhccCcccchhhhhhcChhhhhhhccc---
Confidence 357777774 4555544432 2789999999999998887653 5678899987632 222458888863
Q ss_pred cccCCHH--HHHHHHHHhccCCCEEE
Q 019684 186 EYWPDPQ--RGIREAYRVLKLGGKAC 209 (337)
Q Consensus 186 ~~~~~~~--~~l~~~~~~LkpgG~l~ 209 (337)
.++.+ .......+.+.+.-.+.
T Consensus 73 --t~~d~~N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 73 --TGKEEVNLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp --CSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred --CCcHHHHHHHHHHHHHcCCceEEE
Confidence 22332 34455666777775544
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=91.55 E-value=0.45 Score=39.84 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=51.6
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCeEE-EEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCC-CCCccEEEec
Q 019684 112 MLVVDVGGGTGFTTLGIVKHVDAKNVT-ILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFP-TDYADRYVSA 182 (337)
Q Consensus 112 ~~VLDiGcG~G~~~~~l~~~~~~~~v~-gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~-~~~fD~i~~~ 182 (337)
.+|||+-||.|.+..-+.+. |.+++ ++|+++.+.+..+.|.. ...+.+|+.++... -...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~~---~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS---AKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHCC---SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC---CCCccCChhhCCHhHcccccEEeec
Confidence 37999999999999988877 66655 89999999998888763 35678899876432 2358999874
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.2 Score=38.80 Aligned_cols=93 Identities=14% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCCEEEEEcC--cccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcC-C-CCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGD-A-EDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d-~-~~~~~~~~~fD~i~~~~~l 185 (337)
++.+||=.|. |.|..++.+++.. +++|+++.-+++..+.+++.... .++.-+ . ..-......+|.|+-
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGad---~vi~~~~~~~~~~l~~~~~~~vvD---- 102 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGAS---RVLPRDEFAESRPLEKQVWAGAID---- 102 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTEE---EEEEGGGSSSCCSSCCCCEEEEEE----
T ss_pred CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhccc---cccccccHHHHHHHHhhcCCeeEE----
Confidence 4557776553 4678889999886 78999999999998888865431 122211 1 111234456787752
Q ss_pred cccCCHHHHHHHHHHhccCCCEEEEEcC
Q 019684 186 EYWPDPQRGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 186 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 213 (337)
.+- ...+.+..+.|+++|+++....
T Consensus 103 -~Vg--g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 103 -TVG--DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp -SSC--HHHHHHHHHTEEEEEEEEECCC
T ss_pred -Ecc--hHHHHHHHHHhccccceEeecc
Confidence 222 2478899999999999998754
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=90.21 E-value=0.49 Score=36.24 Aligned_cols=124 Identities=11% Similarity=0.004 Sum_probs=71.3
Q ss_pred EEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccccccCC
Q 019684 113 LVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPD 190 (337)
Q Consensus 113 ~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~~ 190 (337)
.|==||+|. ..++..|.+. +.+|++.|.+++..+...++..............++...-...|.++.. +..-..
T Consensus 4 nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~--~~~~~~ 79 (176)
T d2pgda2 4 DIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILL--VKAGQA 79 (176)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEEC--SCTTHH
T ss_pred cEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEe--cCchHH
Confidence 355677764 3455566665 7899999999998887766533221111111111111111235666542 112222
Q ss_pred HHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhhccCCCHHHHHHHHHhCCCcEEEEEEcC
Q 019684 191 PQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIG 255 (337)
Q Consensus 191 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 255 (337)
...++..+...+++|-.++-.....+. +..++.+.+++.|...++.-..+
T Consensus 80 v~~v~~~l~~~~~~g~iiid~sT~~~~---------------~~~~~~~~~~~~g~~~ldapvsG 129 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGDIIIDGGNSEYR---------------DTMRRCRDLKDKGILFVGSGVSG 129 (176)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHH---------------HHHHHHHHHHHTTCEEEEEEEES
T ss_pred HHHHHHHHHhccccCcEEEecCcchhH---------------HHHHHHHHHHhcCCceecccccc
Confidence 346788889999988766544433222 23456678888899988876654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=1.9 Score=34.69 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=55.4
Q ss_pred CCCEEEEEcCccc---HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 019684 110 RNMLVVDVGGGTG---FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP------FPTDYADRYV 180 (337)
Q Consensus 110 ~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------~~~~~fD~i~ 180 (337)
+|+++|=.|++.| ..+..++++ +.+|+.+|.+++.++...+... ++..+..|+.+.. -.-++.|+++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~g~iDilV 81 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVRECP--GIEPVCVDLGDWEATERALGSVGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHST--TCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHHHHhCCceEEE
Confidence 6899999998887 455666666 8999999999998887776653 5778888986531 1225799998
Q ss_pred eccccccc
Q 019684 181 SAGSIEYW 188 (337)
Q Consensus 181 ~~~~l~~~ 188 (337)
.+....+.
T Consensus 82 nnAg~~~~ 89 (244)
T d1pr9a_ 82 NNAAVALL 89 (244)
T ss_dssp ECCCCCCC
T ss_pred eccccccc
Confidence 76555443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.76 Score=37.53 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=53.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC----CCCCeEEEEcCCCCCC----------CC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECKIVEGDAEDLP----------FP 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~----------~~ 172 (337)
+++.||=.|++.|. .+..|+++ |.+|+.+|.+++.++.+.+.. ...++.++.+|+.+.. -.
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 57899999998874 45555665 899999999998877765432 2235778899996532 11
Q ss_pred CCCccEEEecccccc
Q 019684 173 TDYADRYVSAGSIEY 187 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~ 187 (337)
-+..|+++.+....+
T Consensus 87 ~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 87 HSGVDICINNAGLAR 101 (257)
T ss_dssp HCCCSEEEECCCCCC
T ss_pred cCCCCEEEecccccC
Confidence 256899887655443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.78 E-value=1.2 Score=31.94 Aligned_cols=89 Identities=11% Similarity=-0.031 Sum_probs=52.4
Q ss_pred EEEEEcCcccHHHHHHHhhC--CCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCCC----CCCCccEEEeccccc
Q 019684 113 LVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPF----PTDYADRYVSAGSIE 186 (337)
Q Consensus 113 ~VLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~----~~~~fD~i~~~~~l~ 186 (337)
+++=+|+| .++..+++.+ .+.+|+.+|.+++.++.++.. ....+.+|..+... .-...|.+++...
T Consensus 2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~-- 73 (134)
T d2hmva1 2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----ATHAVIANATEENELLSLGIRNFEYVIVAIG-- 73 (134)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----CSEEEECCTTCTTHHHHHTGGGCSEEEECCC--
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----CCcceeeecccchhhhccCCccccEEEEEcC--
Confidence 34555665 4444444332 278999999999999887643 34677889866431 1134676664321
Q ss_pred ccCC-HHHHHHHHHHhccCCCEEEEE
Q 019684 187 YWPD-PQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 187 ~~~~-~~~~l~~~~~~LkpgG~l~i~ 211 (337)
.+ ....+-...+.+.|...++..
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 74 --ANIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp --SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred --chHHhHHHHHHHHHHcCCCcEEee
Confidence 22 223444555556666776654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.93 E-value=1.4 Score=33.86 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=59.3
Q ss_pred CCEEEEEc--CcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----CCCCCccEEEecc
Q 019684 111 NMLVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----FPTDYADRYVSAG 183 (337)
Q Consensus 111 ~~~VLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~i~~~~ 183 (337)
+++||=-| .|.|.++..+++..+...|++++-+++......+..... ..+...-++.. ..++.+|+|+-.-
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad--~vi~~~~~~~~~~~~~~~~~GvDvv~D~v 108 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD--AAVNYKTGNVAEQLREACPGGVDVYFDNV 108 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS--EEEETTSSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce--EEeeccchhHHHHHHHHhccCceEEEecC
Confidence 37899877 568999999999875557888887776665554333212 11211111110 1234599998433
Q ss_pred cccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 184 SIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 184 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
. ...++...+.|+|+|+++...
T Consensus 109 G-------g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 109 G-------GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp C-------HHHHHHHHTTEEEEEEEEEC-
T ss_pred C-------chhHHHHhhhccccccEEEec
Confidence 2 347889999999999998764
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.59 E-value=2.5 Score=33.78 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=70.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-C---------CCCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-F---------PTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~---------~~~~f 176 (337)
+++.+|=.|++.|. .+..|+++ +++|+.++.+.+.++...+... .++.++++|+.+.. . .-+..
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVAALE-AEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHcC-CceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57889999988763 45556666 8999999999998887776654 56788889986532 0 11569
Q ss_pred cEEEecccccccCCH-----H--------------HHHHHHHHhccCCCEEEEEcCC
Q 019684 177 DRYVSAGSIEYWPDP-----Q--------------RGIREAYRVLKLGGKACIIGPV 214 (337)
Q Consensus 177 D~i~~~~~l~~~~~~-----~--------------~~l~~~~~~LkpgG~l~i~~~~ 214 (337)
|+++.+....+.... + .+.+.+...++.++.+.+....
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~ 137 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV 137 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence 998886655444321 1 3456667778888887776544
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.35 E-value=0.73 Score=37.55 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=66.6
Q ss_pred CCCEEEEEcCccc---HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----------CCCCCc
Q 019684 110 RNMLVVDVGGGTG---FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----------FPTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----------~~~~~f 176 (337)
+++++|=-|++.| ..+..|+++ +++|+.+|.+++.++...+... .+..++.+|+.+.. -.-+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 81 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAELG-ERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHC-TTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhC-CCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 5788888887766 345556666 8999999999988877766543 45677888886532 012568
Q ss_pred cEEEecccccccCC--------HH-----------HHHHHHHHhcc-CCCEEEEEcC
Q 019684 177 DRYVSAGSIEYWPD--------PQ-----------RGIREAYRVLK-LGGKACIIGP 213 (337)
Q Consensus 177 D~i~~~~~l~~~~~--------~~-----------~~l~~~~~~Lk-pgG~l~i~~~ 213 (337)
|+++.+.......+ ++ ...+.+...|+ .+|.++.+..
T Consensus 82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS 138 (253)
T d1hxha_ 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMAS 138 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccc
Confidence 99888655443211 11 34556666665 4788877643
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.19 E-value=2.3 Score=35.90 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=88.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhC------------------------CCCCeEEEEcC
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------------------PLKECKIVEGD 165 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~------------------------~~~~~~~~~~d 165 (337)
+...|+-+|||.-.....+....++.+++=+|. |+.++.=++.. ...+-..+.+|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 456899999999887777777777778888888 44443222110 11346778888
Q ss_pred CCCCC---------CCCCCccEEEecccccccCCH--HHHHHHHHHhccCCCEEEEEcCCC---CchhHhhh----hhh-
Q 019684 166 AEDLP---------FPTDYADRYVSAGSIEYWPDP--QRGIREAYRVLKLGGKACIIGPVY---PTFWLSRY----FAD- 226 (337)
Q Consensus 166 ~~~~~---------~~~~~fD~i~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~~~----~~~- 226 (337)
+.++. +..+.--++++-.++.+++.. .++++.+.+... +|.+++.++.. +...+.+. +..
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~p~D~FG~~M~~nl~~~ 253 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQPNDRFGAIMQSNLKES 253 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCCCCChHHHHHHHHHHHh
Confidence 87642 112223478888999988654 468888888775 56666666542 21111111 111
Q ss_pred ------hhccCCCHHHHHHHHHhCCCcEEEEEEcCccc
Q 019684 227 ------VWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKW 258 (337)
Q Consensus 227 ------~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 258 (337)
....+.+.+...+-+ .||..+...++...|
T Consensus 254 r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm~~~~ 289 (328)
T d1rjda_ 254 RNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDMWEIF 289 (328)
T ss_dssp HCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEHHHHH
T ss_pred cCCCCCccccCCCHHHHHHHH--hcCCccchhhHHHHH
Confidence 112346666666555 488888887776443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.14 E-value=1.6 Score=33.60 Aligned_cols=134 Identities=12% Similarity=0.078 Sum_probs=79.8
Q ss_pred CEEEEEcCcc--cHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--------CC------------CeEEEEcCCCCC
Q 019684 112 MLVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LK------------ECKIVEGDAEDL 169 (337)
Q Consensus 112 ~~VLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--------~~------------~~~~~~~d~~~~ 169 (337)
.+|-=||+|+ ..++..++.. |.+|+.+|.+++.++.+.++.. .. ++. ...+..++
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~ 81 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIR-PTLSYGDF 81 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEE-EESSSTTG
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceee-cccccccc
Confidence 5688899986 2334455555 8999999999999887765321 11 122 12232222
Q ss_pred CCCCCCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhhhh----ccC--------------
Q 019684 170 PFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFADVW----MLF-------------- 231 (337)
Q Consensus 170 ~~~~~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~----~~~-------------- 231 (337)
...|+|+- .+.+.+.-.+++++++.+.++|+-.|.-.+.......+.......- .+|
T Consensus 82 ----~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~ 156 (186)
T d1wdka3 82 ----GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIR 156 (186)
T ss_dssp ----GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEE
T ss_pred ----cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECC
Confidence 23677774 4444444456899999999999888876555443322221111000 011
Q ss_pred ---C---CHHHHHHHHHhCCCcEEEEEE
Q 019684 232 ---P---KEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 232 ---~---~~~~~~~~l~~aGF~~v~~~~ 253 (337)
. +.+...++++..|...+.+.+
T Consensus 157 ~~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 157 GEKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 1 245677888999999887754
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.89 E-value=0.83 Score=32.83 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=59.8
Q ss_pred CcccHHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----CCCCCccEEEecccccccCCHH--
Q 019684 119 GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----FPTDYADRYVSAGSIEYWPDPQ-- 192 (337)
Q Consensus 119 cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----~~~~~fD~i~~~~~l~~~~~~~-- 192 (337)
||.|..+..+++.+.+..++.+|.++...+.... .++.++.+|..+.. ..-.+.+.+++.. ++..
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~d~~n 76 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ESDSET 76 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SSHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----cCccccccccCCHHHHHHhhhhcCcEEEEec-----cchhhh
Confidence 4567788888888777889999999998887764 46789999986532 2224577777532 2332
Q ss_pred HHHHHHHHhccCCCEEEEEcC
Q 019684 193 RGIREAYRVLKLGGKACIIGP 213 (337)
Q Consensus 193 ~~l~~~~~~LkpgG~l~i~~~ 213 (337)
..+....+.+.|...++....
T Consensus 77 ~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 77 IHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp HHHHHHHHHHCSSSCEEEECS
T ss_pred HHHHHHHHHHCCCceEEEEEc
Confidence 345556677888887766543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=87.19 E-value=1.1 Score=36.07 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=65.7
Q ss_pred CCCEEEEEcCccc---HHHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC----------CCCCCc
Q 019684 110 RNMLVVDVGGGTG---FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP----------FPTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----------~~~~~f 176 (337)
+++++|=-|++.| ..+..+++. +++|+.+|.+++.++...+... .+..++..|+.+.. -.-+..
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISDYLG-ANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHG-GGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhC-CCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 5778888887776 345556666 8999999999988877765543 45678888986531 112579
Q ss_pred cEEEecccccccCCH-----H--------------HHHHHHHHhc--cCCCEEEEEc
Q 019684 177 DRYVSAGSIEYWPDP-----Q--------------RGIREAYRVL--KLGGKACIIG 212 (337)
Q Consensus 177 D~i~~~~~l~~~~~~-----~--------------~~l~~~~~~L--kpgG~l~i~~ 212 (337)
|+++.+....+.... + .+.+.+.+.| +.+|.++.+.
T Consensus 80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is 136 (243)
T d1q7ba_ 80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIG 136 (243)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence 998876544433221 1 3455566665 3468887764
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.85 E-value=1 Score=36.56 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=57.7
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC----CCCeEEEEcCCCCCC----------CC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECKIVEGDAEDLP----------FP 172 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~----------~~ 172 (337)
+|+.+|=-|++.|. .+..++++ +++|+.+|.+++.++.+.+... ..++.++.+|+.+.. -.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 47888888987763 44555555 8999999999988777665432 235888999997632 01
Q ss_pred CCCccEEEecccccccCCHH
Q 019684 173 TDYADRYVSAGSIEYWPDPQ 192 (337)
Q Consensus 173 ~~~fD~i~~~~~l~~~~~~~ 192 (337)
-+..|+++.+.......+++
T Consensus 80 ~G~iDilVnnAg~~~~~~~~ 99 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNWE 99 (254)
T ss_dssp HSCCCEEEECCCCCCSSSHH
T ss_pred cCCcCeecccccccccccch
Confidence 25799999888777776654
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=86.74 E-value=0.3 Score=37.98 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=55.8
Q ss_pred CCCCEEEEE--cC-cccHHHHHHHhhCCCCeEEEEe----CCHHHHHHHHhhCCCCCeEEEEcCCCCCC--------CCC
Q 019684 109 NRNMLVVDV--GG-GTGFTTLGIVKHVDAKNVTILD----QSPHQLAKAKQKEPLKECKIVEGDAEDLP--------FPT 173 (337)
Q Consensus 109 ~~~~~VLDi--Gc-G~G~~~~~l~~~~~~~~v~gvD----~s~~~~~~a~~~~~~~~~~~~~~d~~~~~--------~~~ 173 (337)
+++.+||=+ |. |.|..+..+++.. +++|+++- -+++..+.+++.....-+..-..|..+.. ...
T Consensus 27 ~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g 105 (189)
T d1gu7a2 27 TPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSG 105 (189)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhcc
Confidence 477778877 32 3577888888886 78888863 33445555665533211111111221110 013
Q ss_pred CCccEEEecccccccCCHHHHHHHHHHhccCCCEEEEEc
Q 019684 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+.+|+|+-. +. ...+....+.|+|+|+++...
T Consensus 106 ~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 106 GEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp CCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred CCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence 458888732 22 235677889999999998865
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.19 E-value=0.26 Score=40.51 Aligned_cols=86 Identities=17% Similarity=-0.033 Sum_probs=51.1
Q ss_pred EEEEcCCCCC--CCCCCCccEEEeccc----ccc-------cCCHHHHHHHHHHhccCCCEEEEEcCCCCchhHhhhhhh
Q 019684 160 KIVEGDAEDL--PFPTDYADRYVSAGS----IEY-------WPDPQRGIREAYRVLKLGGKACIIGPVYPTFWLSRYFAD 226 (337)
Q Consensus 160 ~~~~~d~~~~--~~~~~~fD~i~~~~~----l~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 226 (337)
.|+++|..+. .++++++|+|+..-- ... .......+.++.|+|||+|.+++.........
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~------- 78 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGE------- 78 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCC-------
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcccccc-------
Confidence 4666776432 356788999888321 111 11135688999999999999988643211100
Q ss_pred hhccCCCHHHHHHHHHhCCCcEEEEEE
Q 019684 227 VWMLFPKEEEYIEWFQKAGFKDVQLKR 253 (337)
Q Consensus 227 ~~~~~~~~~~~~~~l~~aGF~~v~~~~ 253 (337)
.........+..++++.||.......
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~i~ 104 (279)
T d1eg2a_ 79 -AGSGDLISIISHMRQNSKMLLANLII 104 (279)
T ss_dssp -TTBCCHHHHHHHHHHHCCCEEEEEEE
T ss_pred -ccccchhhHHHHHHhccCceeeeeee
Confidence 00011234456788899998766543
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=86.10 E-value=0.55 Score=41.17 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=37.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC--CCeEEEEeCCHHHHHHHHhh
Q 019684 109 NRNMLVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQK 153 (337)
Q Consensus 109 ~~~~~VLDiGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~ 153 (337)
.++..++|||+-.|.++..++...+ ..+|+++|+++...+..+++
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkN 257 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNV 257 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHH
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHH
Confidence 4678999999999999887776543 36899999999998888765
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=85.60 E-value=0.53 Score=38.45 Aligned_cols=103 Identities=11% Similarity=-0.018 Sum_probs=65.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----C------------------------------------CCeEEEEeCCHHHHHH
Q 019684 110 RNMLVVDVGGGTGFTTLGIVKHV----D------------------------------------AKNVTILDQSPHQLAK 149 (337)
Q Consensus 110 ~~~~VLDiGcG~G~~~~~l~~~~----~------------------------------------~~~v~gvD~s~~~~~~ 149 (337)
.+..++|.-||+|.+.+..+-.. | ..+++|.|+++.+++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 45679999999999998765421 0 1346788888888887
Q ss_pred HH---hhC----CCCCeEEEEcCCCCCC-----CCCCCccEEEecccccccC-----C----HHHHHHHHHHhccCCCEE
Q 019684 150 AK---QKE----PLKECKIVEGDAEDLP-----FPTDYADRYVSAGSIEYWP-----D----PQRGIREAYRVLKLGGKA 208 (337)
Q Consensus 150 a~---~~~----~~~~~~~~~~d~~~~~-----~~~~~fD~i~~~~~l~~~~-----~----~~~~l~~~~~~LkpgG~l 208 (337)
|+ +|+ ....+.+...|+.+.. ......++|+++--...-- . ...+...+.+++.....+
T Consensus 130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~ 209 (249)
T d1o9ga_ 130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 209 (249)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEE
Confidence 74 332 1245888999985532 1234578999963332211 1 235666677778655666
Q ss_pred EEEc
Q 019684 209 CIIG 212 (337)
Q Consensus 209 ~i~~ 212 (337)
+++.
T Consensus 210 ~it~ 213 (249)
T d1o9ga_ 210 AVTD 213 (249)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6653
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=84.62 E-value=2.7 Score=33.97 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=53.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCC--------C---CC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP--------F---PT 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~--------~---~~ 173 (337)
+++++|=-|++.|. .+..|+++ +++|+.+|.+++.++.+.+... ..++.++.+|+.+.. . ..
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 68899999988763 45666666 8999999999988877765432 245778889986531 0 12
Q ss_pred CCccEEEeccccccc
Q 019684 174 DYADRYVSAGSIEYW 188 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~ 188 (337)
+..|+++.+....+.
T Consensus 85 ~~idilvnnAG~~~~ 99 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIY 99 (259)
T ss_dssp TCCCEEEECCCCCCC
T ss_pred CCceEEEECCceecc
Confidence 368999886555433
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.24 E-value=2.1 Score=34.60 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC--CCCeEEEEcCCCCCC----------CCCC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIVEGDAEDLP----------FPTD 174 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~----------~~~~ 174 (337)
.++.+|=.|++.|. .+..|++. +.+|+.+|.+++.++.+.+... ..++.++.+|+.+.. -.-+
T Consensus 9 enKvalITGas~GIG~a~a~~la~~--Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 56788888877662 33444444 7899999999988877765532 245788999997632 1125
Q ss_pred CccEEEecccccc
Q 019684 175 YADRYVSAGSIEY 187 (337)
Q Consensus 175 ~fD~i~~~~~l~~ 187 (337)
..|+++.+.....
T Consensus 87 ~iDilvnnag~~~ 99 (251)
T d2c07a1 87 NVDILVNNAGITR 99 (251)
T ss_dssp CCCEEEECCCCCC
T ss_pred Cceeeeecccccc
Confidence 7998887655443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.14 E-value=2.2 Score=34.48 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=65.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCC---CCCeEEEEcCCCCCC-----C-----CC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIVEGDAEDLP-----F-----PT 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~-----~-----~~ 173 (337)
+++++|=-|++.|. .+..|++. +++|+.+|.+++.++.+.+... ..++.++.+|+.+.. + .-
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999988773 55666666 8999999999887765543321 245778889996532 0 11
Q ss_pred CCccEEEecccccccCC-----H---H-----------HHHHHHHHhcc--CCCEEEEEc
Q 019684 174 DYADRYVSAGSIEYWPD-----P---Q-----------RGIREAYRVLK--LGGKACIIG 212 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~-----~---~-----------~~l~~~~~~Lk--pgG~l~i~~ 212 (337)
+..|+++.+....+... . + .+.+.+...|+ .+|.++...
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~ 141 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG 141 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence 56999998655443321 1 1 35666667774 357777664
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=83.05 E-value=1.9 Score=35.15 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=53.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC-CCeEEEEcCCCCCC-----C-----CCCC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIVEGDAEDLP-----F-----PTDY 175 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~-----~-----~~~~ 175 (337)
+++.+|=.|++.|. .+..|+++ +++|+.+|.+++.++.+.+.... .++.++.+|+.+.. + .-+.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 67899999988774 44555666 89999999999988877765433 45788889986532 0 1256
Q ss_pred ccEEEecccc
Q 019684 176 ADRYVSAGSI 185 (337)
Q Consensus 176 fD~i~~~~~l 185 (337)
.|+++.+...
T Consensus 83 iD~lVnnAG~ 92 (268)
T d2bgka1 83 LDIMFGNVGV 92 (268)
T ss_dssp CCEEEECCCC
T ss_pred cceecccccc
Confidence 8999976544
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=82.31 E-value=2.1 Score=34.53 Aligned_cols=97 Identities=19% Similarity=0.149 Sum_probs=63.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCCCCeEEEEcCCCCCC-----C-----CCCCc
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLP-----F-----PTDYA 176 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-----~-----~~~~f 176 (337)
+|+++|=-|++.|. .+..|+++ +++|+.+|.+++..+.+++. +..++..|+.+.. + .-++.
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 77 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKEVAEAI----GGAFFQVDLEDERERVRFVEEAAYALGRV 77 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTHHHHHHHH----TCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc----CCeEEEEeCCCHHHHHHHHHHHHHhcCCC
Confidence 67899999977763 45556666 89999999998877766643 3467888986632 0 11568
Q ss_pred cEEEecccccccCC--------HH-----------HHHHHHHHhccC--CCEEEEEc
Q 019684 177 DRYVSAGSIEYWPD--------PQ-----------RGIREAYRVLKL--GGKACIIG 212 (337)
Q Consensus 177 D~i~~~~~l~~~~~--------~~-----------~~l~~~~~~Lkp--gG~l~i~~ 212 (337)
|+++.+........ ++ .+.+.+...|+. +|.++...
T Consensus 78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is 134 (248)
T d2d1ya1 78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA 134 (248)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccc
Confidence 98887644432211 11 355666666644 57777664
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=81.11 E-value=8.6 Score=28.42 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=57.1
Q ss_pred CEEEEEcCcccH--HHHHHHhhCCCCeEEEEeCCHHHHHHHHhhCCC----CCeEEEEcCC---CCCCCCCCCccEEEec
Q 019684 112 MLVVDVGGGTGF--TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIVEGDA---EDLPFPTDYADRYVSA 182 (337)
Q Consensus 112 ~~VLDiGcG~G~--~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~---~~~~~~~~~fD~i~~~ 182 (337)
++|-=||+|.-. ++..|++. +.+|+.+|.++..++..++.... +......... .++.-.-...|+|+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 578889998643 44445555 78999999999988887764311 1111111000 0110001358988864
Q ss_pred ccccccCCHHHHHHHHHHhccCCCEEEEE
Q 019684 183 GSIEYWPDPQRGIREAYRVLKLGGKACII 211 (337)
Q Consensus 183 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 211 (337)
-- ......+++++...|+++-.+++.
T Consensus 80 v~---~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 80 VP---AIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp SC---GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred Ec---hhHHHHHHHHhhhccCCCCEEEEe
Confidence 21 223467999999999998866543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.84 E-value=2.5 Score=34.38 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=66.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHhhCCCCeEEEEeCC-HHHHHHHHhhC--CCCCeEEEEcCCCCCC----------CCC
Q 019684 110 RNMLVVDVGGGTGF---TTLGIVKHVDAKNVTILDQS-PHQLAKAKQKE--PLKECKIVEGDAEDLP----------FPT 173 (337)
Q Consensus 110 ~~~~VLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s-~~~~~~a~~~~--~~~~~~~~~~d~~~~~----------~~~ 173 (337)
+|+++|=-|++.|. .+..|+++ +++|+.+|.+ ++.++...+.. ...++.++.+|+.+.. -..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 57899999988773 56667776 8999999886 44444443321 1245788889986631 112
Q ss_pred CCccEEEecccccccCCH-------------------HHHHHHHHHhccCCCEEEEEc
Q 019684 174 DYADRYVSAGSIEYWPDP-------------------QRGIREAYRVLKLGGKACIIG 212 (337)
Q Consensus 174 ~~fD~i~~~~~l~~~~~~-------------------~~~l~~~~~~LkpgG~l~i~~ 212 (337)
+..|+++.+......... -.+.+.+...|+.+|.+++..
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 568988876555433221 145777888888888887764
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=80.27 E-value=2.9 Score=28.29 Aligned_cols=68 Identities=21% Similarity=0.169 Sum_probs=42.6
Q ss_pred CCCEEEEEcC-ccc--HHHHHHHhhCCCCeEEEEeCCH-HHHHHHHhhCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 019684 110 RNMLVVDVGG-GTG--FTTLGIVKHVDAKNVTILDQSP-HQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSI 185 (337)
Q Consensus 110 ~~~~VLDiGc-G~G--~~~~~l~~~~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~i~~~~~l 185 (337)
..++|.=||. |+| .+|..+.+. +.+|+|.|... ...+...+ .++.+..+...+. . ...|+|+.+..+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~----~Gi~v~~g~~~~~-i--~~~d~vV~S~AI 77 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQ----AGAKIYIGHAEEH-I--EGASVVVVSSAI 77 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHH----TTCEEEESCCGGG-G--TTCSEEEECTTS
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHH----CCCeEEECCcccc-C--CCCCEEEECCCc
Confidence 5578888874 344 556777777 89999999863 23333332 3566666554331 2 347998887766
Q ss_pred c
Q 019684 186 E 186 (337)
Q Consensus 186 ~ 186 (337)
.
T Consensus 78 ~ 78 (96)
T d1p3da1 78 K 78 (96)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.02 E-value=4.7 Score=30.38 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=53.2
Q ss_pred EEEEEcCcc-cHHHHHHHhhCCCCeEEEE-eCCHHHHHHHHhhCCC-CCeEEEEcCCCCCCCCCCCccEEEecccccccC
Q 019684 113 LVVDVGGGT-GFTTLGIVKHVDAKNVTIL-DQSPHQLAKAKQKEPL-KECKIVEGDAEDLPFPTDYADRYVSAGSIEYWP 189 (337)
Q Consensus 113 ~VLDiGcG~-G~~~~~l~~~~~~~~v~gv-D~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~~~~~~fD~i~~~~~l~~~~ 189 (337)
+|.=||||. |..-.......++.+++++ |.+++-.+...+.... .... ...|.+++ +.+...|+|+...--
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~l-l~~~~iD~v~I~tp~---- 76 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTK-IHGSYESL-LEDPEIDALYVPLPT---- 76 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCE-EESSHHHH-HHCTTCCEEEECCCG----
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccccccee-ecCcHHHh-hhccccceeeecccc----
Confidence 577899985 5443334445578899975 9988766655544322 2233 23454442 223458998853211
Q ss_pred CHHHHHHHHHHhccCCCEEEEEcCCC
Q 019684 190 DPQRGIREAYRVLKLGGKACIIGPVY 215 (337)
Q Consensus 190 ~~~~~l~~~~~~LkpgG~l~i~~~~~ 215 (337)
..-++-+...|+.|=-+++.-|..
T Consensus 77 --~~h~~~~~~~l~~g~~v~~EKP~~ 100 (184)
T d1ydwa1 77 --SLHVEWAIKAAEKGKHILLEKPVA 100 (184)
T ss_dssp --GGHHHHHHHHHTTTCEEEECSSCS
T ss_pred --hhhcchhhhhhhccceeecccccc
Confidence 122344666677665565554543
|